<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:28:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600007" ref_strand="+" ref_description="SGN-E600007 [53009]">
      <seq>ctgaacacaaaagcatcaaattaagcaatcttcacaataacccaagcaaggtgacaaagcaattaactcaagccatggaggttgttggcacttgtggaaaaggaactctttcttctggagagacttcaaacaaacctagtattacatcaatttatgatgatgtagttgtcggctttgagaaacatgcagaaattataatgaataaattgatccgaggaactaaggagcgggatgttatcaccgtctatgggatgcccggactaggtaaaacaactttggcaagaaaggtatacaacaatccctctattgttaattactttgatgttaaagcatggtgtactgtgtcgcaagcatataataggcggacgttattggttgaaattttcaaacaagctacaaataataagatcataatcgaagaggacgatgatgtagctgacatgttgcgcaaggttctaataggcaagagatacctcatcgtgttagatgacatttgggatgtcaaggcatgggaagatttgggaatatgtttccctcaaggtgaatgtggaagcagagcaatggtcacaacacgaattgaacaggtgattaagcatcttcagcaccacagtgatccatattctcttagctttctaacgtccgaagagagttgggaattattggagaagaagatatttcgaggagagagtggtcccccggatctactggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8279" stop="12692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8579" g_stop="8614" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8615" i_stop="11712" i_length="3098">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.676" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11713" g_stop="12392" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="713" r_length="677" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E600007" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8579" e_stop="8614"/>
          <exon e_start="11713" e_stop="12392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTCAAAAGCATCAAATTAAGAAATATTGGTGTCCTGTTCTCTGCTCTTAATAACCCAAGGTCAGATTTCTAAATTTTATTTTTCATACATTTTATTCTATTTAATTGACATCATTATTAAGTAATGTCTTTTAATCAGATAATACTATAAACATTTCATCTTTCTACAATGATCTGATTTTTTTTTCAATCCGGATCAACTCAAAGTTTCTCTCTTAAATAATTTCAAACTTGTTTCAAGTCTTTTGATATTTTATAGACTTGAAATGATTCACATTTTGTGATATATAGAATTTTAAATTTTGACTTCAAAGCTCTTATGTTGGTAGTAAATTTTAGTTGAAAATAAATGACAAAAATGAATTAAAAAATTAAGATTATACAAGAGAATAATAAAATAATAGAAAATAAACCTATATGTATAATAATGATTTAAACATGCATATTGAAGAGAATGAAAAAAGAAAGAGGGAGAAGATGAAAAGAATAAAGCGGCTGGTGGACTTGGGGTGGGATGGGGAAACAACAGATTTGAGCTTTAAAGAAATTGACTTGTTAATGAATCATTAATGAAGGTGTTTAAATTTAAGATAATTATTTAATATCATATTTAAGGAATTTGTGTATCTAATTAAATTTTTTAAAATATATGGTATAAATATTAGAAGTGATAATATTTGTAATTGTTTTAAACTAGAGGTAAATAATATATATATAATTAGAGGCGGTTCTAGGATTTGCTGATTGGGGGTGTCATACCATTTAAGTAAGATAATATGATCAGTTATTTTAATTTTGGGTTACAATTCGGGTTATTGATTTTTTTTATAAACAAATCGATCAAATATGCATGTTAGTAATATTTTATTTTAGATATTTTGTGATTAGATATAACTAAAGAATTCAATTTTCATTCTCTTTTTGAAATTAGATGTCTTATTCGTTGAAATTTTGAGGAAAAAAGAAGATTTTTCACATTAATATTTGAGCTTGTATAAATCATTAAATATTAACATAATATATTCATATTCCATTAGCTTTCTGTGTTGTTGAAGATATTTAATAAAGAAAGAATGAAAATTATAGTTTCAGACTAGTCTTCTTACTCAGCAAAAACGTCGGTGAAGATAGAAATAACCTTGGAATTTAAAAAAACTCTAATAATAATATTCATCATTTTTAAAAACTATTTTTTAAATGTATTCTTAATAATATTTATTTGATGTTCATAATTCAAAGGGAAAATGTATAAGTACGCCCTTAACCTACGCCTGAAATCTTAGATTCACACTTATACTATGCTAAGGTCCTATTATCACTTGAACTTATTTTATTAATAATTTTCTACCCCTTTTTGTCCTACGTGGCATTAGTTTGAAAAAAAAAATGTCAACACACGTTGGGCCCAAAAGATAGTGTCACATAGGTCAAAAAGGGGTAGAAAATTATTTATAAAATAAGTTCAGGGTGTATAGTATAGTATAAGTGTGTCTCTAAAATTTTGGACATAGGTTGAGGAGGTACTTGTGCATTATCCCTAATTCAAAACTCATTAATTGATAAAAATAAACACGTTACTCTTATGAGACAAATAATTAGTGCAAGAGAAATTAAAAAAAACTAAAAGATAATTATAAAAAGGGGCCAATTTGAATCAATAAAGAATAGTTAATAAATAAGAATGAATGGACAAAGAAAAAATTAAGCCCTTTACACACTAATGAAAAAAGAAAAGAAAAGAAACAAACATTTTAAAAAGGTGGGGTTGGTATATATGTATATATATACAACGTTTTTTCCGAGATCAGTGGATGTCGTAGCACCCCCACCTCTCCACGTAGATCCGTCCCTGTATATAATATTGATGTATGTGTAGTTAGGTAGTTTTTCTTAAACAAAGGTGCAAATATTCTTTAAGAAGATTCTAGCTCACTACGACATAATCTACATAGACCCAACAATATCACTATTAACTTGTCCCATCTAGAATACAACAGTCCAACAACGTCGTATATTCAAGCAACTGTGGGTTAGTTGTAGAGTTCAAAACTCCACAAAAAGAATACCTTTCTTTATCATATAATTACCCTATTTTATATAGTTAATATAATTGAACACTTGGAATATTCTTCTTTGTGTCAACTATCTCTTTCATTACACTAACTTTACTACAATATTTTTCCACACTTCTCATATTGTTTTCACAAAAGAAGAAACATCATTATTTATAAATGAAAAAGTCTTCCATATAACCAATGGGTAGAACTAGAGATTGTAGTGCGATAGATATGACTTAAGTTATACGCAGGGCGACTCAACATAATTTAAAGTCTAAAATGAAATTTTACATAGAGACCTAAAATTATGAAAAATAAAAGAATATTTATAATTTTCTTTGTTCAACATTTTCCGGTCATTGATTCATATTTTTGACTTTTTATTATTCTAACTATTAAAGATTTGAAGAATGTAGTGTAGAAGGAATTAAAAAAGATAGGTAATGTGAGTGTTAACGAAGAAAATACAATATATATATATATATATATATTTTTTTTTTATTATAATTAATTATTTCTTTTATAAAAAATTAAATATAATTTTTTATTTTTAAAAAAATTGAGGCCCAAAAAATTGAGTGCCTAAGGCATTGGCCTAAAATTTTTTAGCCAAGAATAGGCACCGGTTATACAAAACTAATGGTAATATGACCTACAAGAAGCTAATGACTATGACAGTTACAAAACTAATAGGAATCTTGATAACGATTTATTTACTCCGTCCGGAATTGTTTGTCATGTTATGCTTTTCGAAAGTCAATTTAATGAATTTTTTCAAGTTAAATAAGATCTCATTAATTTGATATTTTCAACAAAAAATTTATATATTCTAAAATTATATGAAAGTATTATAAATTGCAATTTTTAGCATATTAATGTGATGAAAAAAATATATCTTAGTCAAAATTTTTATAATTTGACTTTAAAAATAGAAACCATAACAAATAATTCTGGACGGATAGAGTATACCCAGCAATGTGTTGTTTGTAGAAGATCATGCTGGATTCTTGTAACATCAAATGCATTTCACTGGAAAAGAAAATGTGACGAATGGCCAATTTTGGTGATAACAGATTATACGTTAAAGGTGACAAAACAATTAACTCAAGCCATGGATGTTGTTGAGACTTGTGGAAAAGGAACTCTTTCTTCTGGAGAGCCTTCAAACAAACCTAGTACTGCATCAATCTATGATGATGATGAAGTTGTGGGCTTTGAGAAAGATGCAGAAATTATAATGAAGAAATTGATACGAGGAACAAAGGAGCGGGATCTTATCTCAATCTATGGAATGCCCGGACTTGGTAAAACAACTTTGGCAAGGAAGGTGTACAACAATCCCTCTATTGTTAATTATTTTGAAGTTAAAGCATGGTGTGCTGTGTCACAAGCATATAATAGGAGTACGTTATTGGTTGAGATTTTCAAACAAGCTACAAATGATAAGATCAAAATCAAAGAGGACGATGATGTAGCTGACATGTTACGCAAGGTTCTAATAGGCAAGAGATACCTCATCGTATTAGATGACATTTGGGAAGTCGAGGCATGGGAAGATTTGGGAATATGTTTCCCTCAAGGTGAATGTGGAAGCAGAGTAATGGTCACAACACGAATTGAACAAGTGGCTAAGCATCTTCAGCACCACAGTCATCCTTATTCTCTTAGCTTTCTCTCATCCAAAAAGAGTTGGGAATTATTGGAGAAGAAGGTATTTCGAGGAGAGAGTTGTCCCCCCGATCTACTGGAAGCA</genome_strand>
        <mrna_strand>CTGAACACAAAAGCATCAAATTAAGCAATCTTCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCCAAGCAAGGTGACAAAGCAATTAACTCAAGCCATGGAGGTTGTTGGCACTTGTGGAAAAGGAACTCTTTCTTCTGGAGAGACTTCAAACAAACCTAGTATTACATCAATTTATGATGATG-T--AGTTGTCGGCTTTGAGAAACATGCAGAAATTATAATGAATAAATTGATCCGAGGAACTAAGGAGCGGGATGTTATCACCGTCTATGGGATGCCCGGACTAGGTAAAACAACTTTGGCAAGAAAGGTATACAACAATCCCTCTATTGTTAATTACTTTGATGTTAAAGCATGGTGTACTGTGTCGCAAGCATATAATAGGCGGACGTTATTGGTTGAAATTTTCAAACAAGCTACAAATAATAAGATCATAATCGAAGAGGACGATGATGTAGCTGACATGTTGCGCAAGGTTCTAATAGGCAAGAGATACCTCATCGTGTTAGATGACATTTGGGATGTCAAGGCATGGGAAGATTTGGGAATATGTTTCCCTCAAGGTGAATGTGGAAGCAGAGCAATGGTCACAACACGAATTGAACAGGTGATTAAGCATCTTCAGCACCACAGTGATCCATATTCTCTTAGCTTTCTAACGTCCGAAGAGAGTTGGGAATTATTGGAGAAGAAGATATTTCGAGGAGAGAGTGGTCCCCCGGATCTACTGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378187" ref_strand="+" ref_description="SGN-E378187 [TUS-33-A14]">
      <seq>gaactagactgcaatttttttgagctttcgaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaagaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgagattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78210" stop="83048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78515" g_stop="78764" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="257" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78765" i_stop="81840" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81841" g_stop="81955" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="372" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81956" i_stop="82545" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82546" g_stop="82760" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="587" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E378187" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78515" e_stop="78764"/>
          <exon e_start="81841" e_stop="81955"/>
          <exon e_start="82546" e_stop="82760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTCGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAGAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGAGATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298705" ref_strand="+" ref_description="SGN-E298705 [cLET-44-N1]">
      <seq>agagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttatgacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttggattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78210" stop="83048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78515" g_stop="78764" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78765" i_stop="81840" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81841" g_stop="81955" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="379" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81956" i_stop="82545" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82546" g_stop="82760" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="594" r_length="215" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E298705" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78515" e_stop="78764"/>
          <exon e_start="81841" e_stop="81955"/>
          <exon e_start="82546" e_stop="82760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTATGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGGATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373573" ref_strand="+" ref_description="SGN-E373573 [TUS-33-A14]">
      <seq>agagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78210" stop="83048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78515" g_stop="78764" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78765" i_stop="81840" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81841" g_stop="81955" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="379" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81956" i_stop="82545" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82546" g_stop="82760" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="594" r_length="215" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E373573" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78515" e_stop="78764"/>
          <exon e_start="81841" e_stop="81955"/>
          <exon e_start="82546" e_stop="82760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373572" ref_strand="+" ref_description="SGN-E373572 [TUS-33-A14](-)">
      <seq>gagagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaaccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78210" stop="83048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78515" g_stop="78764" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="265" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78765" i_stop="81840" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81841" g_stop="81955" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="380" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81956" i_stop="82545" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82546" g_stop="82747" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="582" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E373572" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78515" e_stop="78764"/>
          <exon e_start="81841" e_stop="81955"/>
          <exon e_start="82546" e_stop="82747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTG</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559883" ref_strand="+" ref_description="SGN-E559883 [19450]">
      <seq>ggagctttgaaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaaattcaaagacgcaaggcttaaagtcacaagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaacggtgaattccaaagacaatgaagcagatgattctcttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacaagtatctttacgcaattctttgatcctgaaggaatagcaaatgcacaaaaatctctcggcttaggacaggaagaaaaagtgcgtaaggtccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78229" stop="82917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78528" g_stop="78764" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78765" i_stop="81840" i_length="3076">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81841" g_stop="81955" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="352" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81956" i_stop="82545" i_length="590">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82546" g_stop="82617" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E559883" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78528" e_stop="78764"/>
          <exon e_start="81841" e_stop="81955"/>
          <exon e_start="82546" e_stop="82617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCT</genome_strand>
        <mrna_strand>GGAGCTTTGAAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAATTCAAAGACGCAAGGCTTAAAGTCACAAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACGGTGAATTCCAAAGACAATGAAGCAGATGATTCTCTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACAAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGAAGGAATAGCAAATGCACAAAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTGCGTAAGGTCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277220" ref_strand="+" ref_description="SGN-E277220 [cLEL-3-E1]">
      <seq>tttttaatgataaaattgtggattttcacacattcctaatatctcagtaactgcctcatgattctccacaagaacaagacaattatattcttaactaaatatagaaaaatacccacaaaaacatattaaggcagagctcagttcactacacataaatggtagtaattagtagaagtaaatcaatttccttccattacattaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="+" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83401" stop="84202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83696" g_stop="83902" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="+" ref_id="SGN-E277220" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83696" e_stop="83902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGATAAAATTGTAGAATGTCACACATTCCTAATATATCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATCAAAGAGT</genome_strand>
        <mrna_strand>TTTTTAATGATAAAATTGTGGATTTTCACACATTCCTAATATCTCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATTAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277116" ref_strand="-" ref_description="SGN-E277116 [cLEL-3-C11]">
      <seq>ttttggaatgcatttcatccaactgaaccagtaaacgtcttgtttgaaagaaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatatttagttaagaatataattgtcttgttcttgtggagaatcatgaggcagttactgaggtattaggaatgtgtgacattcccccattttatcattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84310" stop="83401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84010" g_stop="83704" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="326"/>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E277116" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277116" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84010" e_stop="83704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTTATC</genome_strand>
        <mrna_strand>TTTTGGAATGCATTTCATCCAACTGAACCAGTAAACGTCTTGTTTGAAAGAAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGAGGTATTAGGAATGTGTGACATTCCCCCATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375990" ref_strand="+" ref_description="SGN-E375990 [TUS-40-M4](-)">
      <seq>ggtgtattccaagtatttttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaatttttttacattgacattaggaatatgtttcaagattttcttgctaattccagacactatggatttagtgaagtaaattttggatgttgtggagtagggagaaataaagggcaaataacatgtttaccattccaaaccccatgttttaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgttttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgcccctttttgatgtaatggaaggaaattgatttacttttactaattactaccatttatgtgtagtgaactgagctttgccttaatatgtttttgtgggtatttttttatatttagttaagaatataattgttttgtttttgtggagaatcatgaggcagttactgatatattaggaatgtgtgacattttccaattttttcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84681" stop="83401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84381" g_stop="84187" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="84115" i_length="72">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84114" g_stop="83707" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="603" r_length="408" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="642"/>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E375990" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84381" e_stop="84187"/>
          <exon e_start="84114" e_stop="83707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTT</genome_strand>
        <mrna_strand>GGTGTATTCCAAGTATTTTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTTTTACATTGACATTAGGAATATGTTTCAAGATTTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATTTTGGATGTTGTGGAGTAGGGAGAAATAAAGGGCAAATAACATGTTTACCATTCCAAACCCCATGTTTTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTTTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCCCTTTTTGATGTAATGGAAGGAAATTGATTTACTTTTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTTTGCCTTAATATGTTTTTGTGGGTATTTTTTTATATTTAGTTAAGAATATAATTGTTTTGTTTTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTTTCCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221548" ref_strand="+" ref_description="SGN-E221548 [cLEL-10-K24](-)">
      <seq>aaaatcttcttgctaattccagacactatggatttagtgaagtaaatcttggatgttgtggagtagggagaaatagagggcaaataacatgtttaccattccaaaccccatgttctaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatatttagttaagaatataattgtcttgttcttgtggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84432" stop="83457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84216" g_stop="84187" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="84115" i_length="72">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84114" g_stop="83758" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="387" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E221548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84216" e_stop="84187"/>
          <exon e_start="84114" e_stop="83758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGA</genome_strand>
        <mrna_strand>AAAATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACCCCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221961" ref_strand="+" ref_description="SGN-E221961 [cLEL-10-K24](-)">
      <seq>aagatcttcttgctaattccagacactatggatttagtgaagtaaatcttggatgttgtggagtagggagaaatagagggcaaataacatgtttaccattccaaacaccatgttctaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatatttagttaagaatataattgtcttgttcttgtggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84516" stop="83457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84216" g_stop="84187" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="84115" i_length="72">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84114" g_stop="83758" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="387" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E221961" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84216" e_stop="84187"/>
          <exon e_start="84114" e_stop="83758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGA</genome_strand>
        <mrna_strand>AAGATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319712" ref_strand="+" ref_description="SGN-E319712 [cTOB-12-I11]">
      <seq>ttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgagattggtggagtaggactaagggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattaggaatatgtttcaagatcttcttgctaattccagacactatgggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84907" stop="83491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84607" g_stop="84522" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84436" g_stop="84187" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="336" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84186" i_stop="84024" i_length="163">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84023" g_stop="83791" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="569" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E319712" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84607" e_stop="84522"/>
          <exon e_start="84436" e_stop="84187"/>
          <exon e_start="84023" e_stop="83791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTA</genome_strand>
        <mrna_strand>TTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGAGATTGGTGGAGTAGGACTAAGGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG...................................................................................................................................................................GGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321774" ref_strand="+" ref_description="SGN-E321774 [cTOB-25-B21]">
      <seq>aaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattaggaatatgtttcaagatcttcttgctaattccagacactatggatttagtgaagtaaatcttggatgttgtggagtagggagaaatagagggcaaataacatgtttaccattccaaacaccatgttctaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaatactaccatttatgtgtagtgaactgagctctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85020" stop="83523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84720" g_stop="84522" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84436" g_stop="84187" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="449" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84186" i_stop="84115" i_length="72">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84114" g_stop="83823" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="740" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E321774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84720" e_stop="84522"/>
          <exon e_start="84436" e_stop="84187"/>
          <exon e_start="84114" e_stop="83823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTT</genome_strand>
        <mrna_strand>AAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAA-TACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689258" ref_strand="+" ref_description="SGN-E689258 [t3_tus_80_M08]">
      <seq>gtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattaggaatatgtttcaagatcttcttgctaattccagacactatggatttagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86406" stop="83877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86106" g_stop="85905" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="324" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="555" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84187" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="805" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84186" i_stop="84115" i_length="72">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84114" g_stop="84106" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="814" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E689258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86106" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84187"/>
          <exon e_start="84114" e_stop="84106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTG</genome_strand>
        <mrna_strand>GTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314125" ref_strand="+" ref_description="SGN-E314125 [cTOA-21-A13]">
      <seq>taatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattangaatnnatgtttcagatcttcttgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86405" stop="83924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86105" g_stop="85905" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="323" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="554" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84203" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="789" r_length="235" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E314125" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86105" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGT-TTCAAGATCTTCTTGCT</genome_strand>
        <mrna_strand>TAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTANGAATNNATGTTTCAGATCTTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687962" ref_strand="+" ref_description="SGN-E687962 [T3_tus_81_N09]">
      <seq>aataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccctaccaatgttagatcaatgctcaccagccctaataaccatttccctgggctcaaattttcttactttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86496" stop="83933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86196" g_stop="85905" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="645" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84233" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="849" r_length="204" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E687962" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86196" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGAC</genome_strand>
        <mrna_strand>AATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCCTACCAATGTTAGATCAATGCTCACCAGCCCTAATAACCATTTCCCTGGGCTCAAATTTTCTTACTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689222" ref_strand="+" ref_description="SGN-E689222 [t3_tus_80_K03]">
      <seq>attttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctagagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86503" stop="83978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86203" g_stop="85905" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="421" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="650" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84278" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="809" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E689222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86203" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACC</genome_strand>
        <mrna_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTAGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAG--CACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687746" ref_strand="+" ref_description="SGN-E687746 [T3_tus_79_M08]">
      <seq>ttaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttatctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcataagaaatgaatcaacttgttccttccatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86405" stop="84004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86106" g_stop="85905" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="324" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="555" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84303" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="690" r_length="135" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E687746" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86106" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTT-CTTCCATTCCA</genome_strand>
        <mrna_strand>TTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTATCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCATAAGAAATGAATCAACTTGTTCCTTCCATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343585" ref_strand="+" ref_description="SGN-E343585 [cTOF-20-E22]">
      <seq>ataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86495" stop="84092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86195" g_stop="85905" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="413" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="644" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84392" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="689" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E343585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86195" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTA</genome_strand>
        <mrna_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375991" ref_strand="+" ref_description="SGN-E375991 [TUS-40-M4]">
      <seq>attttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86503" stop="84103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86203" g_stop="85905" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="421" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="652" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84403" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="686" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E375991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86203" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGA</genome_strand>
        <mrna_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341969" ref_strand="+" ref_description="SGN-E341969 [cTOF-10-G17]">
      <seq>tccattttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86506" stop="84211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86206" g_stop="85905" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="424" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="655" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84416" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="676" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E341969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86206" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCA</genome_strand>
        <mrna_strand>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327917" ref_strand="+" ref_description="SGN-E327917 [cTOC-22-M18]">
      <seq>ataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgccctattataatacaaaaaatccatataatccctcagaatatgctactctcttgacacacagtataaatcaacactttatagatatacaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86495" stop="84211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86195" g_stop="85905" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="413" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="643" r_length="230" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="0.82"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84421" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="658" r_length="15" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E327917" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86195" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTAT-AATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTG</genome_strand>
        <mrna_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCCTATTATAATACAAAAAATCCATATAATCCCTCAGAATATGCTACTCTCTTGACAC-ACAGTATAAATCAACACTTTAT-.....................................................................................AGA-TATACAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315202" ref_strand="+" ref_description="SGN-E315202 [cTOA-24-H8]">
      <seq>cattttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatccacaacttataagattatacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86504" stop="84214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86204" g_stop="85905" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84522" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="653" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84436" g_stop="84424" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="666" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E315202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86204" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84522"/>
          <exon e_start="84436" e_stop="84424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATC</genome_strand>
        <mrna_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCCACAACTTATA.....................................................................................AGATTATACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324234" ref_strand="+" ref_description="SGN-E324234 [cTOC-4-K11]">
      <seq>cattttacaataaaataaaataaaatatggcttgtaattttaagctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtaaggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86504" stop="84256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86204" g_stop="85905" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85694" g_stop="85573" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84752" g_stop="84556" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="619" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E324234" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86204" e_stop="85905"/>
          <exon e_start="85694" e_stop="85573"/>
          <exon e_start="84752" e_stop="84556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTAC</genome_strand>
        <mrna_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAAGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318440" ref_strand="+" ref_description="SGN-E318440 [cTOB-10-M16]">
      <seq>acaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtggtttttgatgtttatattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaatagattttaatggtggccctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0118O07-DDtFq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0118O07.2" temp_strand="-" temp_description="C06HBa0118O07.2  AC211049.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0118O07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86498" stop="85644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86198" g_stop="85944" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0118O07.2" gen_strand="-" ref_id="SGN-E318440" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0118O07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86198" e_stop="85944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTG</genome_strand>
        <mrna_strand>ACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGGTTTTTGATGTTTATATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATAGATTTTAATGGTGGCCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8579" PGL_stop="12392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8579" e_stop="8614"/>
            <exon e_start="11713" e_stop="12392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.676" e_score="0.778"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.778">
            <gDNA_exon_boundary e_start="8579" e_stop="8614" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.676">
            <gDNA_intron_boundary i_start="8615" i_stop="11712" i_length="3098"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="11713" e_stop="12392" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8579" stop="8614"/>
              <exon start="11713" stop="12392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAACTCAAAAGCATCAAATTAAGAAATATTGGTG : ATTATACGTTAAAGGTGACAAAACAATTAACTCAAGCCATGGATGTTGTTGAGACTTGTGGAAAAGGAACTCTTTCTTCTGGAGAGCCTTCAAACAAACCTAGTACTGCATCAATCTATGATGATGATGAAGTTGTGGGCTTTGAGAAAGATGCAGAAATTATAATGAAGAAATTGATACGAGGAACAAAGGAGCGGGATCTTATCTCAATCTATGGAATGCCCGGACTTGGTAAAACAACTTTGGCAAGGAAGGTGTACAACAATCCCTCTATTGTTAATTATTTTGAAGTTAAAGCATGGTGTGCTGTGTCACAAGCATATAATAGGAGTACGTTATTGGTTGAGATTTTCAAACAAGCTACAAATGATAAGATCAAAATCAAAGAGGACGATGATGTAGCTGACATGTTACGCAAGGTTCTAATAGGCAAGAGATACCTCATCGTATTAGATGACATTTGGGAAGTCGAGGCATGGGAAGATTTGGGAATATGTTTCCCTCAAGGTGAATGTGGAAGCAGAGTAATGGTCACAACACGAATTGAACAAGTGGCTAAGCATCTTCAGCACCACAGTCATCCTTATTCTCTTAGCTTTCTCTCATCCAAAAAGAGTTGGGAATTATTGGAGAAGAAGGTATTTCGAGGAGAGAGTTGTCCCCCCGATCTACTGGAAGCA</gDNA_template>
            <first_frame> L  N  S  K  A  S  N  *  E  I  L  V  :  I  I  R  *  R  *  Q  N  N  *  L  K  P  W  M  L  L  R  L  V  E  K  E  L  F  L  L  E  S  L  Q  T  N  L  V  L  H  Q  S  M  M  M  M  K  L  W  A  L  R  K  M  Q  K  L  *  *  R  N  *  Y  E  E  Q  R  S  G  I  L  S  Q  S  M  E  C  P  D  L  V  K  Q  L  W  Q  G  R  C  T  T  I  P  L  L  L  I  I  L  K  L  K  H  G  V  L  C  H  K  H  I  I  G  V  R  Y  W  L  R  F  S  N  K  L  Q  M  I  R  S  K  S  K  R  T  M  M  *  L  T  C  Y  A  R  F  *  *  A  R  D  T  S  S  Y  *  M  T  F  G  K  S  R  H  G  K  I  W  E  Y  V  S  L  K  V  N  V  E  A  E  *  W  S  Q  H  E  L  N  K  W  L  S  I  F  S  T  T  V  I  L  I  L  L  A  F  S  H  P  K  R  V  G  N  Y  W  R  R  R  Y  F  E  E  R  V  V  P  P  I  Y  W  K   </first_frame>
            <second_frame>  *  T  Q  K  H  Q  I  K  K  Y  W  * :   L  Y  V  K  G  D  K  T  I  N  S  S  H  G  C  C  *  D  L  W  K  R  N  S  F  F  W  R  A  F  K  Q  T  *  Y  C  I  N  L  *  *  *  *  S  C  G  L  *  E  R  C  R  N  Y  N  E  E  I  D  T  R  N  K  G  A  G  S  Y  L  N  L  W  N  A  R  T  W  *  N  N  F  G  K  E  G  V  Q  Q  S  L  Y  C  *  L  F  *  S  *  S  M  V  C  C  V  T  S  I  *  *  E  Y  V  I  G  *  D  F  Q  T  S  Y  K  *  *  D  Q  N  Q  R  G  R  *  C  S  *  H  V  T  Q  G  S  N  R  Q  E  I  P  H  R  I  R  *  H  L  G  S  R  G  M  G  R  F  G  N  M  F  P  S  R  *  M  W  K  Q  S  N  G  H  N  T  N  *  T  S  G  *  A  S  S  A  P  Q  S  S  L  F  S  *  L  S  L  I  Q  K  E  L  G  I  I  G  E  E  G  I  S  R  R  E  L  S  P  R  S  T  G  S  </second_frame>
            <third_frame>   K  L  K  S  I  K  L  R  N  I  G   : D  Y  T  L  K  V  T  K  Q  L  T  Q  A  M  D  V  V  E  T  C  G  K  G  T  L  S  S  G  E  P  S  N  K  P  S  T  A  S  I  Y  D  D  D  E  V  V  G  F  E  K  D  A  E  I  I  M  K  K  L  I  R  G  T  K  E  R  D  L  I  S  I  Y  G  M  P  G  L  G  K  T  T  L  A  R  K  V  Y  N  N  P  S  I  V  N  Y  F  E  V  K  A  W  C  A  V  S  Q  A  Y  N  R  S  T  L  L  V  E  I  F  K  Q  A  T  N  D  K  I  K  I  K  E  D  D  D  V  A  D  M  L  R  K  V  L  I  G  K  R  Y  L  I  V  L  D  D  I  W  E  V  E  A  W  E  D  L  G  I  C  F  P  Q  G  E  C  G  S  R  V  M  V  T  T  R  I  E  Q  V  A  K  H  L  Q  H  H  S  H  P  Y  S  L  S  F  L  S  S  K  K  S  W  E  L  L  E  K  K  V  F  R  G  E  S  C  P  P  D  L  L  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0118O07.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8581" stop="8614"/>
                    <exon start="11713" stop="12392"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKSIKLRNIGDYTLKVTKQLTQAMDVVETCGKGTLSSGEPSNKPSTASIYDDDEVVGFEKDAEIIMKKLIRGTKERDLISIYGMPGLGKTTLARKVYNNPSIVNYFEVKAWCAVSQAYNRSTLLVEIFKQATNDKIKIKEDDDVADMLRKVLIGKRYLIVLDDIWEVEAWEDLGICFPQGECGSRVMVTTRIEQVAKHLQHHSHPYSLSFLSSKKSWELLEKKVFRGESCPPDLLEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="78515" PGL_stop="82760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78515" e_stop="78764"/>
            <exon e_start="81841" e_stop="81955"/>
            <exon e_start="82546" e_stop="82760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78515" e_stop="78764" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="78765" i_stop="81840" i_length="3076"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81841" e_stop="81955" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81956" i_stop="82545" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="82546" e_stop="82760" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78515" stop="78764"/>
              <exon start="81841" stop="81955"/>
              <exon start="82546" stop="82760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78515" stop="78764"/>
              <exon start="81841" stop="81955"/>
              <exon start="82546" stop="82760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78515" stop="78764"/>
              <exon start="81841" stop="81955"/>
              <exon start="82546" stop="82760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78515" stop="78764"/>
              <exon start="81841" stop="81955"/>
              <exon start="82546" stop="82747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78528" stop="78764"/>
              <exon start="81841" stop="81955"/>
              <exon start="82546" stop="82617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG : TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG : ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</gDNA_template>
            <first_frame> T  A  I  F  L  S  F  G  N  G  E  R  E  E  R  A  V  S  V  S  T  M  E  G  R  P  R  T  R  *  K  V  Q  R  R  K  A  Q  S  H  *  P  T  R  *  N  I  H  Y  A  R  S  W  *  K  N  R  E  F  Q  R  Q  *  S  R  *  F  T  *  N  *  S  *  T  S  L  Q  L  P  T  *  L  P   : V  S  S  T  C  L  Q  H  *  H  S  C  *  T  S  A  S  Y  N  G  I  Q  C  F  S  *  L  D  L  L  Y  E  Y  L  Y  A  I  L  * :   S  S  R  N  S  K  C  T  E  I  S  R  L  R  T  G  R  K  S  S  *  G  P  L  K  D  S  F  N  L  C  K  E  *  C  *  V  L  F  V  L  C  L  Y  L  *  Y  S  G  Q  F  C  I  L  Y  T  F  A  D  K  *  Q  V  I  F  E  L  I  S  L  P  </first_frame>
            <second_frame>  L  Q  F  F  *  A  L  E  M  A  K  G  K  K  E  L  L  A  S  A  P  W  R  V  D  Q  E  Q  D  E  K  F  K  D  A  R  L  K  V  T  S  Q  P  G  K  T  S  T  M  H  V  P  G  K  K  T  V  N  S  K  D  N  E  A  D  D  S  L  E  I  D  P  E  L  R  Y  S  F  Q  R  N  F  Q  :  F  L  Q  R  V  F  S  I  D  T  V  V  K  P  L  P  P  T  M  A  Y  N  V  S  R  N  L  T  F  F  T  S  I  F  T  Q  F  F   : D  P  Q  G  I  A  N  A  Q  K  S  L  G  L  G  Q  E  E  K  V  R  K  V  R  *  R  T  H  L  I  S  A  R  S  N  V  E  F  S  L  S  F  A  C  T  S  D  I  L  G  N  F  V  F  Y  I  H  L  L  I  N  D  K  *  S  L  N  *  S  V  Y  Q </second_frame>
            <third_frame>   C  N  F  F  E  L  W  K  W  R  K  G  R  K  S  C  *  R  Q  H  H  G  G  *  T  K  N  K  M  K  S  S  K  T  Q  G  S  K  S  L  A  N  Q  V  K  H  P  L  C  T  F  L  V  K  K  P  *  I  P  K  T  M  K  Q  M  I  H  L  K  L  I  L  N  F  V  T  A  S  N  V  T  S  S :   F  F  N  V  S  S  A  L  T  Q  L  L  N  L  C  L  L  Q  W  H  T  M  F  L  V  T  *  P  S  L  R  V  S  L  R  N  S  L  :  I  L  K  E  *  Q  M  H  R  N  L  S  A  *  D  R  K  K  K  F  V  R  S  A  K  G  L  I  *  S  L  Q  G  V  M  L  S  S  L  C  P  L  L  V  P  L  I  F  W  A  I  L  Y  S  I  Y  I  C  *  *  M  T  S  N  L  *  T  D  Q  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0118O07.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78531" stop="78764"/>
                    <exon start="81841" stop="81955"/>
                    <exon start="82546" stop="82619"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEMAKGKKELLASAPWRVDQEQDEKFKDARLKVTSQPGKTSTMHVPGKKTVNSKDNEADDSLEIDPELRYSFQRNFQFLQRVFSIDTVVKPLPPTMAYNVSRNLTFFTSIFTQFFDPQGIANAQKSLGLGQEEKVRKVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="83696" PGL_stop="83902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83696" e_stop="83902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="83696" e_stop="83902" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83696" stop="83902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAATGATAAAATTGTAGAATGTCACACATTCCTAATATATCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATCAAAGAGT</gDNA_template>
            <first_frame> K  R  M  I  K  L  *  N  V  T  H  S  *  Y  I  S  N  C  L  M  I  L  H  K  N  K  T  I  I  F  L  T  K  Y  R  K  I  P  T  K  T  Y  *  G  R  A  Q  F  T  T  H  K  W  *  *  L  V  E  V  N  Q  F  P  S  I  T  S  K  S </first_frame>
            <second_frame>  K  E  *  *  N  C  R  M  S  H  I  P  N  I  S  V  T  A  S  *  F  S  T  R  T  R  Q  L  Y  S  *  L  N  I  E  K  Y  P  Q  K  H  I  K  A  E  L  S  S  L  H  I  N  G  S  N  *  *  K  *  I  N  F  L  P  L  H  Q  R   </second_frame>
            <third_frame>   K  N  D  K  I  V  E  C  H  T  F  L  I  Y  Q  *  L  P  H  D  S  P  Q  E  Q  D  N  Y  I  L  N  *  I  *  K  N  T  H  K  N  I  L  R  Q  S  S  V  H  Y  T  *  M  V  V  I  S  R  S  K  S  I  S  F  H  Y  I  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0118O07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="86206" PGL_stop="83704"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86206" e_stop="85905"/>
            <exon e_start="85694" e_stop="85573"/>
            <exon e_start="84752" e_stop="84522"/>
            <exon e_start="84436" e_stop="84187"/>
            <exon e_start="84114" e_stop="83704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86206" e_stop="85905" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.989">
            <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85694" e_stop="85573" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84752" e_stop="84522" e_length="231"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84436" e_stop="84187" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84186" i_stop="84115" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="84114" e_stop="83704" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86206" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86204" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86204" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86203" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86203" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86198" stop="85944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86196" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86195" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86195" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84187"/>
              <exon start="84114" stop="84106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86105" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84720" stop="84522"/>
              <exon start="84436" stop="84187"/>
              <exon start="84114" stop="83823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84381" stop="84187"/>
              <exon start="84114" stop="83707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84216" stop="84187"/>
              <exon start="84114" stop="83758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84216" stop="84187"/>
              <exon start="84114" stop="83758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84010" stop="83704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277116" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG : CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT : GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA : AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG : GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTTATC</gDNA_template>
            <first_frame> S  I  L  Q  *  N  K  I  K  Y  G  L  *  F  *  A  I  S  F  V  F  F  D  V  F  I  A  S  E  *  *  *  *  C  N  M  S  R  R  R  K  W  N  K  K  C  I  G  A  C  H  V  Y  F  W  R  L  I  D  R  Q  W  Q  *  Q  *  L  S  F  F  S  *  G  *  L  F  S  L  W  N  *  F  *  W  W  P  Y  W  S  F  L  Q  W  S  H  Y  G  *  C  Y  C :   *  I  A  W  T  A  F  D  S  S  I  L  T  G  F  W  R  P  N  E  I  W  S  Q  L  C  L  C  C  C  W  H  S  *  *  Y  W  K  K  F   : C  R  A  H  S  I  Q  S  A  N  H  K  F  *  E  H  T  E  P  I  K  K  Q  W  R  C  G  R  G  T  S  K  I  N  F  L  C  W  N  G  K  Q  *  L  P  *  Q  L  P  Y  A  *  L  *  Y  K  K  S  I  *  S  S  R  I  C  Y  S  L  D  T  T  V  *  S  T  T  Y   : K  I  I  Q  S  W  S  K  K  I  C  D  W  W  S  R  T  N  G  V  Y  S  K  Y  S  C  T  K  P  K  W  C  M  F  R  G  S  E  S  T  C  S  S  I  P  *  Q  C  *  I  N  A  H  Q  P  K  Y  Q  F  P  W  L  Q  I  F  L  H  *  H  *  E  Y  V  S  R  S  S  C  *  F  Q  T  L  W :   I  *  *  S  K  S  W  M  L  W  S  R  E  K  *  R  A  N  N  M  F  T  I  P  N  T  M  F  *  Q  G  T  I  H  I  L  G  C  I  S  S  N  *  S  S  K  R  L  V  W  K  E  G  F  *  W  W  T  *  C  C  L  S  N  E  Y  S  A  T  C  H  S  L  M  *  W  K  E  I  D  L  L  L  L  I  T  T  I  Y  V  *  *  T  E  L  C  L  N  M  F  L  W  V  F  F  Y  I  *  L  R  I  *  L  S  C  S  C  G  E  S  *  G  S  Y  *  Y  I  R  N  V  *  H  S  T  I  L   </first_frame>
            <second_frame>  P  F  Y  N  K  I  K  *  N  M  A  C  N  F  R  L  F  P  L  C  F  L  M  F  L  L  L  V  N  N  N  N  N  V  I  C  Q  E  E  G  S  G  T  K  S  A  L  V  P  A  M  F  I  F  G  D  S  L  I  D  N  G  N  N  N  N  L  A  S  L  A  K  A  N  Y  F  P  Y  G  I  D  F  N  G  G  P  T  G  R  F  S  N  G  L  T  M  V  D  V  I   : A  E  L  L  G  L  P  L  T  P  A  Y  S  Q  V  S  G  D  Q  M  R  F  G  V  N  Y  A  S  A  A  A  G  I  L  D  N  T  G  R  N  F  :  V  G  R  I  P  F  N  Q  Q  I  T  N  F  E  S  T  L  N  Q  L  R  N  N  G  D  V  E  E  A  L  A  K  S  I  F  F  V  G  M  G  S  N  D  Y  L  N  N  Y  L  M  P  N  Y  N  T  K  N  Q  Y  N  P  Q  E  Y  A  T  L  L  T  Q  Q  Y  N  Q  Q  L  I  :  R  L  Y  N  L  G  A  R  K  F  V  I  G  G  V  G  L  M  G  C  I  P  S  I  L  A  Q  S  Q  N  G  A  C  S  E  E  V  N  Q  L  V  L  P  F  H  N  N  V  R  S  M  L  T  S  L  N  T  N  F  P  G  F  K  F  S  Y  I  D  I  R  N  M  F  Q  D  L  L  A  N  S  R  H  Y   : G  F  S  E  V  N  L  G  C  C  G  V  G  R  N  R  G  Q  I  T  C  L  P  F  Q  T  P  C  S  N  R  E  Q  Y  I  F  W  D  A  F  H  P  T  E  A  V  N  V  L  F  G  R  K  A  F  S  G  G  P  D  V  V  Y  P  M  N  I  Q  Q  L  A  T  L  *  C  N  G  R  K  L  I  Y  F  Y  *  L  L  P  F  M  C  S  E  L  S  S  A  L  I  C  F  C  G  Y  F  S  I  F  S  *  E  Y  N  C  L  V  L  V  E  N  H  E  A  V  T  D  I  L  G  M  C  D  I  L  Q  F  Y  </second_frame>
            <third_frame>   H  F  T  I  K  *  N  K  I  W  L  V  I  L  G  Y  F  L  C  V  F  *  C  F  Y  C  *  *  I  I  I  I  M  *  Y  V  K  K  K  E  V  E  Q  K  V  H  W  C  L  P  C  L  F  L  E  T  H  *  *  T  M  A  I  T  I  T  *  L  L  *  L  R  L  T  I  F  L  M  E  L  I  L  M  V  A  L  L  V  V  S  P  M  V  S  L  W  L  M  L  L  :  L  N  C  L  D  C  L  *  L  Q  H  T  H  R  F  L  E  T  K  *  D  L  E  S  I  M  P  L  L  L  L  A  F  L  I  I  L  E  E  I  L :   *  G  A  F  H  S  I  S  K  S  Q  I  L  R  A  H  *  T  N  *  E  T  M  E  M  W  K  R  H  *  Q  N  Q  F  S  L  L  E  W  E  A  M  T  T  L  T  I  T  L  C  L  I  I  I  Q  K  I  N  I  I  L  K  N  M  L  L  S  *  H  N  S  I  I  N  N  L  * :   D  Y  T  I  L  E  Q  E  N  L  *  L  V  E  *  D  *  W  G  V  F  Q  V  F  L  H  K  A  K  M  V  H  V  Q  R  K  *  I  N  L  F  F  H  S  I  T  M  L  D  Q  C  S  P  A  *  I  P  I  S  L  A  S  N  F  L  T  L  T  L  G  I  C  F  K  I  F  L  L  I  P  D  T  M  :  D  L  V  K  *  I  L  D  V  V  E  *  G  E  I  E  G  K  *  H  V  Y  H  S  K  H  H  V  L  T  G  N  N  T  Y  F  G  M  H  F  I  Q  L  K  Q  *  T  S  C  L  E  G  R  L  L  V  V  D  L  M  L  F  I  Q  *  I  F  S  N  L  P  L  F  D  V  M  E  G  N  *  F  T  S  T  N  Y  Y  H  L  C  V  V  N  *  A  L  P  *  Y  V  F  V  G  I  F  L  Y  L  V  K  N  I  I  V  L  F  L  W  R  I  M  R  Q  L  L  I  Y  *  E  C  V  T  F  Y  N  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0118O07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86181" stop="85905"/>
                    <exon start="85694" stop="85573"/>
                    <exon start="84752" stop="84522"/>
                    <exon start="84436" stop="84187"/>
                    <exon start="84114" stop="83894"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMACNFRLFPLCFLMFLLLVNNNNNVICQEEGSGTKSALVPAMFIFGDSLIDNGNNNNLASLAKANYFPYGIDFNGGPTGRFSNGLTMVDVIAELLGLPLTPAYSQVSGDQMRFGVNYASAAAGILDNTGRNFVGRIPFNQQITNFESTLNQLRNNGDVEEALAKSIFFVGMGSNDYLNNYLMPNYNTKNQYNPQEYATLLTQQYNQQLIRLYNLGARKFVIGGVGLMGCIPSILAQSQNGACSEEVNQLVLPFHNNVRSMLTSLNTNFPGFKFSYIDIRNMFQDLLANSRHYGFSEVNLGCCGVGRNRGQITCLPFQTPCSNREQYIFWDAFHPTEAVNVLFGRKAFSGGPDVVYPMNIQQLATL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86206" e_stop="85905"/>
            <exon e_start="85694" e_stop="85573"/>
            <exon e_start="84752" e_stop="84522"/>
            <exon e_start="84436" e_stop="84187"/>
            <exon e_start="84023" e_stop="83704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.927" e_score="0.992"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86206" e_stop="85905" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.989">
            <gDNA_intron_boundary i_start="85904" i_stop="85695" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85694" e_stop="85573" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85572" i_stop="84753" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84752" e_stop="84522" e_length="231"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84521" i_stop="84437" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="84436" e_stop="84187" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.927">
            <gDNA_intron_boundary i_start="84186" i_stop="84024" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="84023" e_stop="83704" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86206" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86204" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86204" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86203" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86203" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86198" stop="85944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86196" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86195" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86195" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86105" stop="85905"/>
              <exon start="85694" stop="85573"/>
              <exon start="84752" stop="84522"/>
              <exon start="84436" stop="84203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84607" stop="84522"/>
              <exon start="84436" stop="84187"/>
              <exon start="84023" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84010" stop="83704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277116" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG : CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT : GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA : AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG : GGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTTATC</gDNA_template>
            <first_frame> S  I  L  Q  *  N  K  I  K  Y  G  L  *  F  *  A  I  S  F  V  F  F  D  V  F  I  A  S  E  *  *  *  *  C  N  M  S  R  R  R  K  W  N  K  K  C  I  G  A  C  H  V  Y  F  W  R  L  I  D  R  Q  W  Q  *  Q  *  L  S  F  F  S  *  G  *  L  F  S  L  W  N  *  F  *  W  W  P  Y  W  S  F  L  Q  W  S  H  Y  G  *  C  Y  C :   *  I  A  W  T  A  F  D  S  S  I  L  T  G  F  W  R  P  N  E  I  W  S  Q  L  C  L  C  C  C  W  H  S  *  *  Y  W  K  K  F   : C  R  A  H  S  I  Q  S  A  N  H  K  F  *  E  H  T  E  P  I  K  K  Q  W  R  C  G  R  G  T  S  K  I  N  F  L  C  W  N  G  K  Q  *  L  P  *  Q  L  P  Y  A  *  L  *  Y  K  K  S  I  *  S  S  R  I  C  Y  S  L  D  T  T  V  *  S  T  T  Y   : K  I  I  Q  S  W  S  K  K  I  C  D  W  W  S  R  T  N  G  V  Y  S  K  Y  S  C  T  K  P  K  W  C  M  F  R  G  S  E  S  T  C  S  S  I  P  *  Q  C  *  I  N  A  H  Q  P  K  Y  Q  F  P  W  L  Q  I  F  L  H  *  H  *  E  Y  V  S  R  S  S  C  *  F  Q  T  L  W :   E  Q  Y  I  F  W  D  A  F  H  P  T  E  A  V  N  V  L  F  G  R  K  A  F  S  G  G  P  D  V  V  Y  P  M  N  I  Q  Q  L  A  T  L  *  C  N  G  R  K  L  I  Y  F  Y  *  L  L  P  F  M  C  S  E  L  S  S  A  L  I  C  F  C  G  Y  F  S  I  F  S  *  E  Y  N  C  L  V  L  V  E  N  H  E  A  V  T  D  I  L  G  M  C  D  I  L  Q  F  Y  </first_frame>
            <second_frame>  P  F  Y  N  K  I  K  *  N  M  A  C  N  F  R  L  F  P  L  C  F  L  M  F  L  L  L  V  N  N  N  N  N  V  I  C  Q  E  E  G  S  G  T  K  S  A  L  V  P  A  M  F  I  F  G  D  S  L  I  D  N  G  N  N  N  N  L  A  S  L  A  K  A  N  Y  F  P  Y  G  I  D  F  N  G  G  P  T  G  R  F  S  N  G  L  T  M  V  D  V  I   : A  E  L  L  G  L  P  L  T  P  A  Y  S  Q  V  S  G  D  Q  M  R  F  G  V  N  Y  A  S  A  A  A  G  I  L  D  N  T  G  R  N  F  :  V  G  R  I  P  F  N  Q  Q  I  T  N  F  E  S  T  L  N  Q  L  R  N  N  G  D  V  E  E  A  L  A  K  S  I  F  F  V  G  M  G  S  N  D  Y  L  N  N  Y  L  M  P  N  Y  N  T  K  N  Q  Y  N  P  Q  E  Y  A  T  L  L  T  Q  Q  Y  N  Q  Q  L  I  :  R  L  Y  N  L  G  A  R  K  F  V  I  G  G  V  G  L  M  G  C  I  P  S  I  L  A  Q  S  Q  N  G  A  C  S  E  E  V  N  Q  L  V  L  P  F  H  N  N  V  R  S  M  L  T  S  L  N  T  N  F  P  G  F  K  F  S  Y  I  D  I  R  N  M  F  Q  D  L  L  A  N  S  R  H  Y   : G  N  N  T  Y  F  G  M  H  F  I  Q  L  K  Q  *  T  S  C  L  E  G  R  L  L  V  V  D  L  M  L  F  I  Q  *  I  F  S  N  L  P  L  F  D  V  M  E  G  N  *  F  T  S  T  N  Y  Y  H  L  C  V  V  N  *  A  L  P  *  Y  V  F  V  G  I  F  L  Y  L  V  K  N  I  I  V  L  F  L  W  R  I  M  R  Q  L  L  I  Y  *  E  C  V  T  F  Y  N  F  I </second_frame>
            <third_frame>   H  F  T  I  K  *  N  K  I  W  L  V  I  L  G  Y  F  L  C  V  F  *  C  F  Y  C  *  *  I  I  I  I  M  *  Y  V  K  K  K  E  V  E  Q  K  V  H  W  C  L  P  C  L  F  L  E  T  H  *  *  T  M  A  I  T  I  T  *  L  L  *  L  R  L  T  I  F  L  M  E  L  I  L  M  V  A  L  L  V  V  S  P  M  V  S  L  W  L  M  L  L  :  L  N  C  L  D  C  L  *  L  Q  H  T  H  R  F  L  E  T  K  *  D  L  E  S  I  M  P  L  L  L  L  A  F  L  I  I  L  E  E  I  L :   *  G  A  F  H  S  I  S  K  S  Q  I  L  R  A  H  *  T  N  *  E  T  M  E  M  W  K  R  H  *  Q  N  Q  F  S  L  L  E  W  E  A  M  T  T  L  T  I  T  L  C  L  I  I  I  Q  K  I  N  I  I  L  K  N  M  L  L  S  *  H  N  S  I  I  N  N  L  * :   D  Y  T  I  L  E  Q  E  N  L  *  L  V  E  *  D  *  W  G  V  F  Q  V  F  L  H  K  A  K  M  V  H  V  Q  R  K  *  I  N  L  F  F  H  S  I  T  M  L  D  Q  C  S  P  A  *  I  P  I  S  L  A  S  N  F  L  T  L  T  L  G  I  C  F  K  I  F  L  L  I  P  D  T  M  :  G  T  I  H  I  L  G  C  I  S  S  N  *  S  S  K  R  L  V  W  K  E  G  F  *  W  W  T  *  C  C  L  S  N  E  Y  S  A  T  C  H  S  L  M  *  W  K  E  I  D  L  L  L  L  I  T  T  I  Y  V  *  *  T  E  L  C  L  N  M  F  L  W  V  F  F  Y  I  *  L  R  I  *  L  S  C  S  C  G  E  S  *  G  S  Y  *  Y  I  R  N  V  *  H  S  T  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0118O07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86181" stop="85905"/>
                    <exon start="85694" stop="85573"/>
                    <exon start="84752" stop="84522"/>
                    <exon start="84436" stop="84187"/>
                    <exon start="84023" stop="83977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMACNFRLFPLCFLMFLLLVNNNNNVICQEEGSGTKSALVPAMFIFGDSLIDNGNNNNLASLAKANYFPYGIDFNGGPTGRFSNGLTMVDVIAELLGLPLTPAYSQVSGDQMRFGVNYASAAAGILDNTGRNFVGRIPFNQQITNFESTLNQLRNNGDVEEALAKSIFFVGMGSNDYLNNYLMPNYNTKNQYNPQEYATLLTQQYNQQLIRLYNLGARKFVIGGVGLMGCIPSILAQSQNGACSEEVNQLVLPFHNNVRSMLTSLNTNFPGFKFSYIDIRNMFQDLLANSRHYGNNTYFGMHFIQLKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 72 chains have been computed
$ 
$ memory statistics:
$ 51416 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 2056 bytes was the average size of a spliced alignment
$ 9688 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2422 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 97 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:31:41
-->
