<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:49:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312906" ref_strand="-" ref_description="SGN-U312906        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttttttttttcataaagagtcataaccattaaatcgtaacaacatatgcgagccgacaaggccgccactatccaaaacataatagcatacgcagccgacgaggctgccactacacaatacacaatgatgttcacaaccgacaaggctgcacttgtacaaatggacatcccaaacaaaccatgtccagaccattatccaaaacataattatacaacccacacgatgtctacagacctctaagagtatagtagtgaaacttgacgggacagggccccgccatacccatagacaagcaaaagactacataagaagttatgtaccaaaacgactgggctccggaacagtggagctctcccaaaaagcagagtagatatcctaggcgggaggatcaccgaactgagcgtctacacctgcgggcatgaaacgcagccccccgagaaaagggggtcagtacggacaatgtactgagtatgtaaagcataaggtaaagatgacaggataccaacatgataagtcgaaacaagatatctctacacatgtactttttaagtgaaaatcatgcatatctttaacatataagatgcctaacttccctagtaagggactcggcaaaataatcatcattatatatacatcatagtacccggccctctagtgagggactcggtgaaatagtcatcacatcatctccgtcatcatcatcatcataaccatcctcatcaccaatcatatatataatatacattcccggccctctagtgagggactcggtgacatatgcaagaaactccgcacgaacattacccggcccgggactcggtgaaatgataaatgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18548" stop="27435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18861" g_stop="19469" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="634" r_length="607" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19470" i_stop="19808" i_length="339">
            <donor d_prob="0.453" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19809" g_stop="19814" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="640" r_length="6" r_score="0.833"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19815" i_stop="26936" i_length="7122">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.739" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26937" g_stop="27136" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="839" r_length="199" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="11" polyA_stop="1"/>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U312906" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18861" e_stop="19469"/>
          <exon e_start="19809" e_stop="19814"/>
          <exon e_start="26937" e_stop="27136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAACCATAACAGCATACGCGAGCCGACAAGGCCGCCACTATTCAAAGCATAATAACATACGTATGCCGACAAGGCTGCCACTACACAATACATAATGATGTACGCAGCCGACAAGGCTGCCCTTGTACAAGCGGACATCCCAAACAAACCATGTCCAGACCATTATCCAAAACATATATATACAACCCACATAATGTCCACAGACCTCTAAGAGTACATTAGTGAAACTCGACGGGACAGGGCCCCGCCATACCCATAGACGAGCAAAAGACTACACAA-AAGTTATGTACCAAAACGACTGGGCTCCGGAACAGTGGAGCTCTCCCAATCAGCAGAGTAGATATCCTAGGCGGGAGGATCACCGAACTGCGCGTCTACACCTGCGGGCATGAAACGCAGCCCTCCCGAGGAAAGGGGGGTCAGTACGGACAATGTACTGAGTGTGTAAAGCATAAGGTAAAGATGACAAAATACTAATATGGCAAGTCGAAACAAAATATCGCTACACATATACCTTTTAAGTGAAAATCATGCATATATTTAACATTTAAGGTGCCCAGCTTCCCTAGTAAGGGGCTCGGCAAAATAATCATCACGTCATCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATACCCGGCCCTCTAGTGAGGAACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCGGCCCGGGACTCGGTGAAATGATAAATGACTCTATGCACGAGCAGAATATTATGAGCAACCATATGCAATTAAAATCATTTCTTATAACTCAATAGAACAATCAACGTGAACCAGCAAGGAGTATTACCAAAGATTAATGTTTTATCAAGATTATGAACCTTTAATACAATATGGAAACGTAAAATCTCAATGACTCTAAGAAGCATTACCATAGATATTAGAGATCATCATAGCCTTAGACATAGCCGATATATAGAGGAATAATTGTGGAAGCAAGAATATACGTCACCTAGACGCTTTCGAGGTAAGTATCAAGTCTGTCCGTTATTCGCTTATTTTTAAAAGTCATGCTAAGCAAAGAAAGAAGGGACATCGTTACATACCGTATAATCAAGCCGCACGTCCAATATTTACTGCTCAAGCTATTAATCTATAACAAGCAACAATCGTGCCGCAATTAGATAAACATCATGCTTTACTTTCTTGTAAGCTAGCTAATAATCTAACGAAAATTCGACAGCACCTCCCCTATTTTCCTTACTTCGTCCCAATCCGACAACAATCCAAATTATCCACAGCAATACCAATATAACCCAAAGAATCATATTAAACAACCCCCTCCCCAAAACAGTTCCGTCTCGGCAACCATAGCAGTGAAGAAACGGCACAACGAGCGATAACTCGTTTTATAATTCACAACACATCTACCTTATCGTATTCATCCTTTGGAGTATATACTCATAATCACATTCAACATATACATAATGCCAAAATAGAATTTTCCTGCAGTTTGCTTTAATCAAAACAGCCCAAGCACCAACACGACACCACTAATAATCCGATTATGGTTTCCATTCATACTTAGCACATTCAATAACTAAAACAAACTTCCTAAGATACTGGTCACGCCCCCTTCTTAAAATTAATGGATAATTAACAAGGGTATTCTAAAGAATTAACACACCAAACAAGGAGATTACTAACCAAATTATTGGCAGCTGCTGGCCAAGAGTTGCAGGGTTGGTTTCTCCATTTGCATGGCTGCCTAAGACAAGTGGTGAAGAAGAAGATGATATGCATCAATGCATTTCACCACTTTATATAGCATGGAGTGGATTTCTCCACCTCATTTAATAGTATGAAGTGGAGGCAGCCCCCCTCTACACCTGTCCACTAAGGCCAGCCCACAATCTGATCCCTTTTTAATTTTTGCCTTGAGTGGTGGGGCCCATTAGATTAAATCAATCCAAATTAGCCACTAATTAATCCCTCACTTAAAGTTAATGTCACTTACATTAGCCAACTCATACTTAATATCACATTTGTAAATAACATCCTTGCCTAATATTTCTTTACGTCTTCTAGATCACGATGCGCACTACGTATATATAAAAAAAATACGAGGCATAACATCCTTCCCCCCTTAGGAACAATTCGTCCTCGAATGTTAAGTTAGCGTCTTGCAAAAACAAATTCCAGCGAGGTCTCTCTAAAAGTTATACCTATCAACCTGCATTCCGTAACTTATAGATGCCTCACAGCTACATAATCTCATTATCTATCAATATAGTCAAGCTAGGAATTGAATTACCTGCAGGTACGGGGAACAAGTAAGGATACTTATTCTTCATTTCGTCTTCCGCTTCCCAAGTCATCTCCTCCCTATTGTTATTTTTCCACAACACTTTGACGGAAGCCACATCCTTAGTACGTAACCTTCTAACCTGACGAACAAGTATAGCCACGGGTTTCTCCTCATATGACAACTCCTCTGTTACCTGAATATCATCTACAGGGAATACTCTAGAAGAATCACCAATACATTTACGTAGCATCGATACATGGAAGACTGGATGTACCGCCTCCAAATCAGATGGTAGATCCAACTCATAGGCAACCTTGCCTATCCTACGAACAATCTGATAAGGCCCAATGTATCTTGGACTGAGCTTCCCCTTCCTGCCGAATCTCATCACACCCCTCATGGGTGATACCTTCAGGAATACCCAGTCACCAATCTGAAACTCCAAATCTCGACGCCGTTTATCTGCATATGACTTCTGTCGACTCTGGGCTGCTAATAATCTTTCTTGAATAAGCTTCACCTTGTCAACAGCTTGCTGAATCACATCCGGGCCTATTAACTTAGTCTCGCCAACATCAAACCAACCAATAGGTGATCTGCACTTCCTCCCATATAAGGCCTCGTACGGTGCCATATGGATACTAGAATGGTAGCTATTATTATAGGCAAACTCAATGAGCGGCAAGTGGTCATCCCAGTTGCCTTTGAAGTCAATAATACAGGCCCGCAACATATCTTCTAGTGTCTGAATAGTACGCTCAGCCTGCCCATCAGTCTGAGGGTGAAATGCTGTGCTAAGGTTCACCTGTGTCCCCAATCCCTTCTGAAACGATCTCCAAAAGTTGGCTGTAAATTAAGCTCCTCTGTCTGATATAATGGACGTGGGAACCCCATGAAGTCTCACTATCTCCCTGACATATAACCTCACATAATCTTCAGCCGAATAAGTAGTCCTGACTGGAAGAAAATAGGCCGATTTCGTCAGCCTATCTACAATAACCCATATAGAGTCATACTTCCGTTGAGTGCGAGGTAAGCCTGTAATGAAGTCCATATTAATCATCTCCCATTTCCAAGTCGGGATCTCTATCTCCTGTAATAATCCACCAGGCTTTTGATGTTCGATCTTGACTTGTTGACAATTTGGGCACTGAGCAACAAACTCTGCTATGTCCTTTTCCATGCCATCCCACCAATATAAGCATCTGAGGTCATGATACATTTTTGTTGACCCTGGGTGAATAGAATAACGGGCAGAGTGTGCCTCTCCCATAACTTGCCGTCGTAGCCCCGCAGTATCGGGTACACACAATCTGCCTTCATATCGTAACACTCCATTAGGTGTAACCTTAAATGGGGTCTTTTCCTTTTGAAGAGCTGCATCTTTATACTGTGCCAGAATAGGGTCCTTGTATTGGTGTCTCTTTACCTCATCTATGATTGACGACTCAACAACCTCTCGAATAGAAACTCCACTATCTTCCGAATTAGCTAGACGGACTCCAAGGCTGGATAGCCGCTGAATCTCCCGAACCATATCCCTCCCTTCTGGTTGTACATCTGTCAAGCTACCCATGGACTTACGGCTAAGAGCATCTGCTACAACATTCGCTTTCCCTGGATGATATAAAATATTAACATCATAATCCTTTAGCAACTCTAACCACCGCCTCTGTCGTAAGTTCAACTCCTTCTGTTTAAAGATATATTGGAGACTCTTATGATCTGTATAGATGTCCACATGGACATCATATAAATAATGTCTCCATATCTTCAAGGCATGAACCACGACCGCTAACTCCAGATCGTGAGTAGGATAGTTCTTTTCATGCTTCCTAAGTTGTTGGGGGGCATAGGCTATAACTTTGCCATGCTGCATCAATACACATCCTAGCCCAACACCCGAAGCATCACAATAAATAACATAGCCGCCTGGTCCCTCCGGAAGAGTTAGGACTGGAGCTGTAATCAATTTGTCTTTCAATAGCTGGAAGCTTCACTCACAAGCATCTGTCCACTGGAACTTGGCTGCCTTTTGAGTTAGCCTTGTCAAAGGCGCTGAAATTGAGGCAAACTTTTCTACGAATCTCCTATAATATCCTGCTAACCCCAAAAAGTTGCGTACCTCAATAGGTGTCGTAGGTATGGGCCAAGTCTTTACTGCCTCAATCTTCTGCTGTCTACCCGAATACCATCAGCTCCAATAATATGCCCCAAGAATGCCACTGAAGTCAACCAGAACTCGCACTTAGAAAATTTAGCATACAACTTCTAGTGTTGAAGCACCCTAAGTACCGTCCTTAAATGATCTGCATGCTCCTCTTCTGAACGTGAATAGACCAGAATATCGTCTATAAATACAATAACAAACATATCAAGGAATGGTTTAAATACTCGATTCATTAAATCCATGAACACCGCTGGAGCATTAGTCAGCCCAAAAGACAGCACTCTAAACTCATAATGCCCATATCGGGTCCGGAATGTCGTCTTTTGAATATCTGCCTCCCTTACCTGCACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACACTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTATTCTTTATTGTTACTTTGTTCAACTGCCTATAATCAATGCACATCCGCAGCGACCCATCCTTCTTCCTCATAAACAGTACCGGTGCTCCCCAAGGTGACGTACTAGGCCTGATGAAGCCCTTTTCTAGCAAATCCCTCAATTGCTGTTTCAATTCTTTCAACTCAGCAGGTGCCATTCTATAAGGAGGTATAGATATAGGCTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATCAGGAAATTCATTAACTATCGGGACTGATTGAAGAGTCGGTGCCTCTGCCTTTATGTCATGCACCCGAATCAGATGGTAAATATAGCCTTTTCTAACCATCTTCCCAGCCTTGAGGTATGAAATGAACTTACCTTTCGGCGATATTGTACTTCCCTTCCACTCTATAATCGGTTCCCCTGGAAATTGAAATCGAACTATCTTTCCTCTGCAATCAACATTAGCATAACAAGCAGCCAACCAATCCTTGCCCATGATAATATCAAACTCAATCATATTTAACTCTATTAGATCTGCTACGGTATGACTACTATATATAACTACTGAACAATTCCTATATACTCGCGTAGCTATGACAAAATCTCCTACAGGTGTAGCTACCTCAAATGGTTCTATCAACTCAGACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGCATACACACTTCGGGAGAATAGTGATAATATACCTGTGATCACATTAGGTGACGCCTCCTGATCTTGCCTATTAGTCAAAGCATATATACGGTTTGAGGGACCGCTAGAACTGGAAGCTCCACCACGTCCACTACCACGGCCTGCTGGTGCCTGAATACCCTGCCCTGTAGGGCGCATAGCCACAGAAGAAGATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCACCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGACGGCCGCAAGAAAAACACGCACCTATAGCCCAACGACATTCCCCATGATGGGACTTACCACAACGAGAACACCGAGGCAAAGGTGGCCTCGACTGGCTCAAACCCCTGCCCATCTGTGACCCTAACGCCCTAGAGCTCTGACCAGCTTCCGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTGTGCTGGCTGGGAAGAAAATCTAACATGCTGCTGAGACTGCCCGCTTTGAGACTCGTCAGGATAACCTGCTGATCTAGCCCTCTTATGCTGGCCTCTATTATAATCTCTATCTGGCTGATGTCCCTGGTGCCGATCCTCTACCCCCTGTGCATATGCCTGCACCCGAGCAATGTCCATACCTGGCTGAAGATTCACTGCCATACAACCGTCAATCAGATAACAATCCAATCCCATCACATAACGATTTACCCTGTCTGCCATATCAGCCACAATAGTAGGCGCATGCCTAGCCAATGAATCAAACTCGAGGCTATACTCTCGAACGCTCCTGCCATTTTGCTTCAAACGCAAGAATTTATCGACTCTAACTCGCTTCATCTCTAGAGGCAGGAAGTGGCCCTGGAAAGCCTCCACAAATTCATCCCATACCGCTGGAGGAGCACCCTCACCCCTAGATAACTCCCAAGACTCATACCAATTAATAGCTACATCCCGCAAATGATACGTAGCCAACTCAACAGACTCGGTCTCCGAAGCCTTGATTATCCTCAATGTACGCTGCATCTGACGAATAAAATCTTGTGGATCATCCTGGGGCCTTGACCCAAAGAACTCTGGAGGATTACAACTTAAGAAGTCACGAGCCCTTAAGCTATCAGATCTGTCCGCATGATCAACTCCTAGTCCATGCCTGCGAGCCTGATCTGCCATTAATCTAGTCAGCAATTGAACCGCATCTCTCATGGCCCTAACCTCCGCCCCTGACTGAGGAGCTGGAGGTTCAGATGTTGGGGCCTCGGGGGCTGGTGGTGTCCCTCGAACTGGAGCTGCTGCTACTCTAAGCTCTTCTGGCGGTGGGGGTGTAGCAGAGCTCTCCGACTGGAGCATAATACCAGGCATAGACTGGGCACGGGCCCTAGTAACTCTCCAGGTCTGACTAGTACCTTCTGCTACCGATTTTCCCTTCTGGGCGGCTGTCACTTTCTTTGGAGGCATAGGTGAAAACACACGGATTCGTTAGAGAGGGAGTATCCTGTTAATATAGCTCTATCGCACGATCTAGAATAAGAAGAAAGAATGACATCCTAAATGTCCTGTAGCTTCCTGTTTATAGATGTGGTGCACAACACACCGATAAACAAGACTCTACTAGACACAGTCTGTAGACACTTCCGAGGAAGAACCACTCTGATACCACTCTTTGTCACAACCCAACCCAATAGGCCGTGACTAGTGCCCGTTTTGGACACCCACATACAAACCTGCTAAGTATGACCAACTGAAACTAAGACAATATGGAATTTAATCAAATCAAGCCAACCCCAACGTCATATATATATAAGAGGACCTGTCTCATAAGGAGTCATAACCATTCAACCATAACAGCATACGCGAGCCGACAAGGCCGCCACTATTCAAAGCATAATAACATACGTATGCCGACAAGGCTGCCACTACACAATACACAATGATGTACGCAGCCAACAAGGCTGCCTCTGTACAAGCGGACATCCCAAACAAACCATGTCCAGACCATTATCCAAAACATATATATACAACCCACATAATGTCCACAGACCTCTAAGAGTACATTAGTGAAACTCGACGAGACAGGGCCCCGCCATACCCATAGACGAGCAAAAGACTACACAAAAGTTATGTACCAAAACGACTGGGCTCCGGAACAGTGGAGCTCTCCCAATCACCAGAGTAGATATCCTAGGGAGGATCACCGAACTATGCGTCTACACCTGCGGGCATGAAACGCAGCCCCCCCGAGGAAAGGGGGGTCAGTACGGACAATGTACTGAGTATGTAAAGCATAAGGTAAAGATGACAGGATACAAATATGGCAAGTCGAAACAAAATATCGCTACACATATACCTTTTAAGTGAAAATCATGCATATATTTAACATTTAAGGTGCCCAGCTTCCCTAGTAAAGGGCTCGGCAAAATAATCATCACGTCCTCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATACCCGGCCCTCTAGTGAGGAACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCAGCCCGGGACTCGGTGAAATGATAAATGACTA</genome_strand>
        <mrna_strand>CATTAAATCGTAACAACATATGCGAGCCGACAAGGCCGCCACTATCCAAAACATAATAGCATACGCA-GCCGACGAGGCTGCCACTACACAATACACAATGATGTTCACAACCGACAAGGCTGCACTTGTACAAATGGACATCCCAAACAAACCATGTCCAGACCATTATCCAAAACATAATTATACAACCCACACGATGTCTACAGACCTCTAAGAGTATAGTAGTGAAACTTGACGGGACAGGGCCCCGCCATACCCATAGACAAGCAAAAGACTACATAAGAAGTTATGTACCAAAACGACTGGGCTCCGGAACAGTGGAGCTCTCCCAAAAAGCAGAGTAGATATCCTAGGCGGGAGGATCACCGAACTGAGCGTCTACACCTGCGGGCATGAAACGCAGCCC-CCCGA-GAAAAGGGGGTCAGTACGGACAATGTACTGAGTATGTAAAGCATAAGGTAAAGATGACAGGATACCAACATGATAAGTCGAAACAAGATATCTCTACACATGTACTTTTTAAGTGAAAATCATGCATATCTTTAACATATAAGATGCCTAACTTCCCTAGTAAGGGACTCGGCAAAATAATCATCATTATATATAC...................................................................................................................................................................................................................................................................................................................................................ATCATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCCGGC-CCTCTAGTGAGGGACTCGGTGAAATAGTCATCACATCATCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATTCCCGGCCCTCTAGTGAGGGACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCGGCCCGGGACTCGGTGAAATGATAAATGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332435" ref_strand="+" ref_description="SGN-U332435        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47900698|gb|AAT39297.1| putative gag-pol protein [Solanum demissum] (evalue: 9e-98, score=358)">
      <seq>ttaaatagtcttcatgctcctcttctgaacgtgaatagaccagaatatcgtctataaatccaataacaaacatatcaaggaatggattaaatactcaattcattaaatccatgaataccgctggagcaatagtcagcccaaaagacaacactctaaacacataatgcccatatcgggtccggaatgccgtcattgggatatctgcctccctaacccgtacctgatgataacctgaccgcaagtctatctttgaaaaaccctttgcaccctgcaactggtcaaatagatcgtcaatccttgggaggggatacctgttcattattgttactttgttcagctgcctataatcaatgcacatccggagcgacccatccttcttcctcacaaatagtaccggtgctccccaaggtgacgtactaggcctgatgaagcccttttctagtaaatccctcaattgctctttcaattctttcaactcagcaggtgccattctataaggaggtatagatataggttgggtatctggcagtacatctatagtaaactctatctcccgttctggaggaaggcctggaagttcctcggggaatacatcaggaaattcattaactaccgagactgattgaagagtcagtgcctctgcctttatgtcatgcacccgaatcagatggtaaatatagccttttctaaacatcttcccggccttgaagtatgaaatgaacttaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23171" stop="24500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23471" g_stop="24200" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U332435" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23471" e_stop="24200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGATCTGCATGCTCCTCTTCTGAACGTGAATAGACCAGAATATCGTCTATAAATACAATAACAAACATATCAAGGAATGGTTTAAATACTCGATTCATTAAATCCATGAACACCGCTGGAGCATTAGTCAGCCCAAAAGACAGCACTCTAAACTCATAATGCCCATATCGGGTCCGGAATGTCGTCTTTTGAATATCTGCCTCCCTTACCTGCACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACACTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTATTCTTTATTGTTACTTTGTTCAACTGCCTATAATCAATGCACATCCGCAGCGACCCATCCTTCTTCCTCATAAACAGTACCGGTGCTCCCCAAGGTGACGTACTAGGCCTGATGAAGCCCTTTTCTAGCAAATCCCTCAATTGCTGTTTCAATTCTTTCAACTCAGCAGGTGCCATTCTATAAGGAGGTATAGATATAGGCTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATCAGGAAATTCATTAACTATCGGGACTGATTGAAGAGTCGGTGCCTCTGCCTTTATGTCATGCACCCGAATCAGATGGTAAATATAGCCTTTTCTAACCATCTTCCCAGCCTTGAGGTATGAAATGAACTTACCTTT</genome_strand>
        <mrna_strand>TTAAATAGTCTTCATGCTCCTCTTCTGAACGTGAATAGACCAGAATATCGTCTATAAATCCAATAACAAACATATCAAGGAATGGATTAAATACTCAATTCATTAAATCCATGAATACCGCTGGAGCAATAGTCAGCCCAAAAGACAACACTCTAAACACATAATGCCCATATCGGGTCCGGAATGCCGTCATTGGGATATCTGCCTCCCTAACCCGTACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACCCTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTGTTCATTATTGTTACTTTGTTCAGCTGCCTATAATCAATGCACATCCGGAGCGACCCATCCTTCTTCCTCACAAATAGTACCGGTGCTCCCCAAGGTGACGTACTAGGCCTGATGAAGCCCTTTTCTAGTAAATCCCTCAATTGCTCTTTCAATTCTTTCAACTCAGCAGGTGCCATTCTATAAGGAGGTATAGATATAGGTTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATCAGGAAATTCATTAACTACCGAGACTGATTGAAGAGTCAGTGCCTCTGCCTTTATGTCATGCACCCGAATCAGATGGTAAATATAGCCTTTTCTAAACATCTTCCCGGCCTTGAAGTATGAAATGAACTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343255" ref_strand="+" ref_description="SGN-U343255        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824950|gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] (evalue: 1e-22, score=109)">
      <seq>tcaaatggttctatcaactcatactctattccgatcctactagcaacaaagggagatatatatgataaggtggaacctgggtctatcaatgtatacacacttcgggagaatagtgataatatacctgtgatcacattaggtgacaccccctgatcctgcctattagtcaaagcatatatacggttcgaggcactgctagaactggaagctccaccacgtcctctaccatggcctgctggcgcctgaataccctgccccgtagggcgcatagccacagaagaaaatgaaccagcaacggaccctgtaggctgtgccataccacctgcactacctctaaggtgacactccctcatagtatggccctgacggccgcaagaaaaacacgcacctgtagcccaacgacattccccaggatgggacttaccacaatgagaacactgaggcaaaggtggcctcgactggctcaaactcctgcccatctgtgaccctaacgccctagagctctgaccagcttctgaatatcccatacgatcgaaccccctacccatgaaacgtgggggtgcactctgtgctggctgggaagaaaatctaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24145" stop="25342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24445" g_stop="25042" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U343255" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24445" e_stop="25042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTTCTATCAACTCAGACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGCATACACACTTCGGGAGAATAGTGATAATATACCTGTGATCACATTAGGTGACGCCTCCTGATCTTGCCTATTAGTCAAAGCATATATACGGTTTGAGGGACCGCTAGAACTGGAAGCTCCACCACGTCCACTACCACGGCCTGCTGGTGCCTGAATACCCTGCCCTGTAGGGCGCATAGCCACAGAAGAAGATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCACCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGACGGCCGCAAGAAAAACACGCACCTATAGCCCAACGACATTCCCCATGATGGGACTTACCACAACGAGAACACCGAGGCAAAGGTGGCCTCGACTGGCTCAAACCCCTGCCCATCTGTGACCCTAACGCCCTAGAGCTCTGACCAGCTTCCGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTGTGCTGGCTGGGAAGAAAATCTAACATGCT</genome_strand>
        <mrna_strand>TCAAATGGTTCTATCAACTCATACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGTATACACACTTCGGGAGAATAGTGATAATATACCTGTGATCACATTAGGTGACACCCCCTGATCCTGCCTATTAGTCAAAGCATATATACGGTTCGAGGCACTGCTAGAACTGGAAGCTCCACCACGTCCTCTACCATGGCCTGCTGGCGCCTGAATACCCTGCCCCGTAGGGCGCATAGCCACAGAAGAAAATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCACCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGACGGCCGCAAGAAAAACACGCACCTGTAGCCCAACGACATTCCCCAGGATGGGACTTACCACAATGAGAACACTGAGGCAAAGGTGGCCTCGACTGGCTCAAACTCCTGCCCATCTGTGACCCTAACGCCCTAGAGCTCTGACCAGCTTCTGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTGTGCTGGCTGGGAAGAAAATCTAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344139" ref_strand="+" ref_description="SGN-U344139        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>catcgttatgtgatgggattggatggttatctgattgacattcctatggcagtgactcttcatccaggtatggacattgctcgggtgcaggcatatgcacagggggtagaggatcggcaccggggacgttagccagatagagattataatagagggccccataagagggctagatcaccaggttatcttgacgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25558" stop="24764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25259" g_stop="25064" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U344139" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25259" e_stop="25064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGTTATGTGATGGGATTGGATTGTTATCTGATTGACGGTTGTATGGCAGTGAATCTTCAGCCAGGTATGGACATTGCTCGGGTGCAGGCATATGCACAGGGGGTAGAGGATCGGCACCAGGGACATCAGCCAGATAGAGATTATAATAGAGGCCAGCATAAGAGGGCTAGATCAGCAGGTTATCCTGACGAGT</genome_strand>
        <mrna_strand>CATCGTTATGTGATGGGATTGGATGGTTATCTGATTGACATTCCTATGGCAGTGACTCTTCATCCAGGTATGGACATTGCTCGGGTGCAGGCATATGCACAGGGGGTAGAGGATCGGCACCGGGGACGTTAGCCAGATAGAGATTATAATAGAGGGCCCCATAAGAGGGCTAGATCACCAGGTTATCTTGACGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340464" ref_strand="+" ref_description="SGN-U340464        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaatggagaaaccaaccctgcaactcttggccagtagctgcaaataatttggggagtaatctccttgtttggtgtgttaattctttagaacacccttgttaattatccattaattttaagaagggggcgtgaccagttgcttacgaagtttgttttagttattgaatgtgctaagtatgaatggaaaccataatcggattattagtggtgtcgtgttggtgcttgggctgttttgattaaagcaaactgcaggaaaattctattttggcattatgtatatgctgaatgtgattatgagtatatactccaacggatgaatacgattaggtaaatgtgttgcgaattataaaacgagttatcgctcggtgtgtcggtgcttcgctgctatagttgcccagacggaactgttttggggagggggctgcctaatgtgatacttcgggttatatgtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28447" stop="27393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28147" g_stop="27693" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U340464" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28147" e_stop="27693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAGAAACCAACACTGCAACTCTTGGCCAGCAGCTGCAAATAATTTGGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTTTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACAGAACTGTTTTGGGGAGGGGGCTGTTTAATATGACTCTTTGGGTTATATGTGTTA</genome_strand>
        <mrna_strand>AAATGGAGAAACCAACCCTGCAACTCTTGGCCAGTAGCTGCAAATAATTTGGGGAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAACACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTTGCTTACGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGCTGAATGTGATTATGAGTATATACTCCAACGGATGAATACGATTAGGTAAATGTGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGGTGCTTCGCTGCTATAGTTGCCCAGACGGAACTGTTTTGGGGAGGGGGCTGCCTAATGTGATACTTCGGGTTATATGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340464" ref_strand="+" ref_description="SGN-U340464        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaatggagaaaccaaccctgcaactcttggccagtagctgcaaataatttggggagtaatctccttgtttggtgtgttaattctttagaacacccttgttaattatccattaattttaagaagggggcgtgaccagttgcttacgaagtttgttttagttattgaatgtgctaagtatgaatggaaaccataatcggattattagtggtgtcgtgttggtgcttgggctgttttgattaaagcaaactgcaggaaaattctattttggcattatgtatatgctgaatgtgattatgagtatatactccaacggatgaatacgattaggtaaatgtgttgcgaattataaaacgagttatcgctcggtgtgtcggtgcttcgctgctatagttgcccagacggaactgttttggggagggggctgcctaatgtgatacttcgggttatatgtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79512" stop="80565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79812" g_stop="80265" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U340464" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79812" e_stop="80265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAGAAACCAACCCTGCAACTCTTGGCCAGCAGCTGCAAATAATTTGGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCTTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCTATAGCTTAGGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAACGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGACTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTA-TTTGGCATTATTTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATGTGTTGCGAAATATAAAATGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACGGAACTGTTTTGGGGAGGGGGCTGTTTAATATGATTCGTTGGTTTATATGTGTTA</genome_strand>
        <mrna_strand>AAATGGAGAAACCAACCCTGCAACTCTTGGCCAGTAGCTGCAAATAATTTGGGGAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAACACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTTGCTTACGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGCTGAATGTGATTATGAGTATATACTCCAACGGATGAATACGATTAGGTAAATGTGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGGTGCTTCGCTGCTATAGTTGCCCAGACGGAACTGTTTTGGGGAGGGGGCTGCCTAATGTGATACTTCGGGTTATATGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344139" ref_strand="+" ref_description="SGN-U344139        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>catcgttatgtgatgggattggatggttatctgattgacattcctatggcagtgactcttcatccaggtatggacattgctcgggtgcaggcatatgcacagggggtagaggatcggcaccggggacgttagccagatagagattataatagagggccccataagagggctagatcaccaggttatcttgacgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82308" stop="83064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82608" g_stop="82803" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U344139" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82608" e_stop="82803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTTATGTGATGGGATTGGATCGTTATCTGATTGACGGTTGTATGGCAGTGACTCTTCATCCAGGTATGGACATTGCTCGGGTGCAGGCATATGCACAGGGGGTAGAGGATCGGCACCGGGGACGTCAGCCAGATAGAGATTATAATAGAGGCCAGTAGAAGAGGGCTAGATCAGCAGGTTATCCTGACGAGT</genome_strand>
        <mrna_strand>CATCGTTATGTGATGGGATTGGATGGTTATCTGATTGACATTCCTATGGCAGTGACTCTTCATCCAGGTATGGACATTGCTCGGGTGCAGGCATATGCACAGGGGGTAGAGGATCGGCACCGGGGACGTTAGCCAGATAGAGATTATAATAGAGGGCCCCATAAGAGGGCTAGATCACCAGGTTATCTTGACGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343255" ref_strand="+" ref_description="SGN-U343255        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824950|gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] (evalue: 1e-22, score=109)">
      <seq>tcaaatggttctatcaactcatactctattccgatcctactagcaacaaagggagatatatatgataaggtggaacctgggtctatcaatgtatacacacttcgggagaatagtgataatatacctgtgatcacattaggtgacaccccctgatcctgcctattagtcaaagcatatatacggttcgaggcactgctagaactggaagctccaccacgtcctctaccatggcctgctggcgcctgaataccctgccccgtagggcgcatagccacagaagaaaatgaaccagcaacggaccctgtaggctgtgccataccacctgcactacctctaaggtgacactccctcatagtatggccctgacggccgcaagaaaaacacgcacctgtagcccaacgacattccccaggatgggacttaccacaatgagaacactgaggcaaaggtggcctcgactggctcaaactcctgcccatctgtgaccctaacgccctagagctctgaccagcttctgaatatcccatacgatcgaaccccctacccatgaaacgtgggggtgcactctgtgctggctgggaagaaaatctaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83722" stop="82525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83422" g_stop="82825" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U343255" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83422" e_stop="82825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTTCTATCAACTAAGACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGCATACACACTTTGGGAGAATAGTGATAATATACCTATGATCACATTAGGTGACGCCTCCTGATCTTGCCTATTAGTTAAAGCATATATACGGTTCGAGGGACCGCTAGAACTGGAAGCTCCACCACATCCTCTACCACGGCCTGCTGGCGCCTGAATACCCTGCCCCGTAGGGTGCATAGCCACAGAAGAAGATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCATCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGAAGGCCGCAAGAAAAACACGCACCTGTAGCCCAACGACATTCCCCAGGATGGGACTTACCACAACGAGAACACCGAGGCAAAGGTGGCCTCAACTAGCTCAAACCCTTGCCCATCTGTGACCCTGACGCCCTAAAGCTCTGACCAGCTTCCGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTATGCTGGCTGGGAAGAAAATCTAACATGCT</genome_strand>
        <mrna_strand>TCAAATGGTTCTATCAACTCATACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGTATACACACTTCGGGAGAATAGTGATAATATACCTGTGATCACATTAGGTGACACCCCCTGATCCTGCCTATTAGTCAAAGCATATATACGGTTCGAGGCACTGCTAGAACTGGAAGCTCCACCACGTCCTCTACCATGGCCTGCTGGCGCCTGAATACCCTGCCCCGTAGGGCGCATAGCCACAGAAGAAAATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCACCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGACGGCCGCAAGAAAAACACGCACCTGTAGCCCAACGACATTCCCCAGGATGGGACTTACCACAATGAGAACACTGAGGCAAAGGTGGCCTCGACTGGCTCAAACTCCTGCCCATCTGTGACCCTAACGCCCTAGAGCTCTGACCAGCTTCTGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTGTGCTGGCTGGGAAGAAAATCTAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332435" ref_strand="+" ref_description="SGN-U332435        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47900698|gb|AAT39297.1| putative gag-pol protein [Solanum demissum] (evalue: 9e-98, score=358)">
      <seq>ttaaatagtcttcatgctcctcttctgaacgtgaatagaccagaatatcgtctataaatccaataacaaacatatcaaggaatggattaaatactcaattcattaaatccatgaataccgctggagcaatagtcagcccaaaagacaacactctaaacacataatgcccatatcgggtccggaatgccgtcattgggatatctgcctccctaacccgtacctgatgataacctgaccgcaagtctatctttgaaaaaccctttgcaccctgcaactggtcaaatagatcgtcaatccttgggaggggatacctgttcattattgttactttgttcagctgcctataatcaatgcacatccggagcgacccatccttcttcctcacaaatagtaccggtgctccccaaggtgacgtactaggcctgatgaagcccttttctagtaaatccctcaattgctctttcaattctttcaactcagcaggtgccattctataaggaggtatagatataggttgggtatctggcagtacatctatagtaaactctatctcccgttctggaggaaggcctggaagttcctcggggaatacatcaggaaattcattaactaccgagactgattgaagagtcagtgcctctgcctttatgtcatgcacccgaatcagatggtaaatatagccttttctaaacatcttcccggccttgaagtatgaaatgaacttaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84685" stop="83356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84385" g_stop="83656" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U332435" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84385" e_stop="83656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTGTCTGCATGCTCCTCTTCTGAACGTGAATAGACAAGAATATCGTCTATAAATACAATAACAACAATATCAAGGAATGGTTTAAATACTCGATTCATTAAATCCATGAACACCGCTGGAGCATTAGTCAGCCCAAAAGACAGCACTCTAAACTCATAATGCCCATATCGGGTCCGGAATGCCGTCTTTGGAATATCTACCTCCCTTTCCCGCACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACACTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTGTTCTTTATTGTTACTTTGTTCAACTGCCTATAATCAATGCACATCCGCAGCGACCCATCCTTCTTCCTCACAAACAGTACCGGTGCTCCCCAAGGTGACATATTAGGCCTGATGAAGCCTTTTTCTAGCAAATCCCTTAATTGCTCTTTCAATTCTTTCAACTCAGCAGGTGCCATTTTATAAGGAGGTATAGATATAGGCTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATTGGGAAATTCATTAACTACCGGGACTGATTGAAGAGTCGGTGCCTCTGCCTTTATGTCATGCACCCGAATGAGATGGTAAATATAGCCTTTTCTAACCATCTTCCCGGCCTTGAGGTATGAAATGAACTTACCTTT</genome_strand>
        <mrna_strand>TTAAATAGTCTTCATGCTCCTCTTCTGAACGTGAATAGACCAGAATATCGTCTATAAATCCAATAACAAACATATCAAGGAATGGATTAAATACTCAATTCATTAAATCCATGAATACCGCTGGAGCAATAGTCAGCCCAAAAGACAACACTCTAAACACATAATGCCCATATCGGGTCCGGAATGCCGTCATTGGGATATCTGCCTCCCTAACCCGTACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACCCTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTGTTCATTATTGTTACTTTGTTCAGCTGCCTATAATCAATGCACATCCGGAGCGACCCATCCTTCTTCCTCACAAATAGTACCGGTGCTCCCCAAGGTGACGTACTAGGCCTGATGAAGCCCTTTTCTAGTAAATCCCTCAATTGCTCTTTCAATTCTTTCAACTCAGCAGGTGCCATTCTATAAGGAGGTATAGATATAGGTTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATCAGGAAATTCATTAACTACCGAGACTGATTGAAGAGTCAGTGCCTCTGCCTTTATGTCATGCACCCGAATCAGATGGTAAATATAGCCTTTTCTAAACATCTTCCCGGCCTTGAAGTATGAAATGAACTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102774" stop="100757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102474" g_stop="101058" g_length="1417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1417" r_length="1417" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>1417</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102474" e_stop="101058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGACCTCTACCATGACCACCTCTACCTCTAACTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATTCATAACACTCTCTAGAGTCAGGCATAGGTCTTTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCAAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATCTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGACTTTGCCGTAGCCGCTACCTGTCAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAATGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTTTTCCTGTCTCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTCGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGAGCATCCATACGGAGAGCCGCAGTAGCCGCATGTTGTACCTCCGGACCCTGAGGTGCTGGAGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATGTCTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100749" stop="101887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101060" g_stop="101587" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="554" r_length="528" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101060" e_stop="101587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGACATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCTCCAGCACCTCAGGGTCCGGAGGTACAACATGCGGCTACTGCGGCTCTCCGTATGGATGCTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCGAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>TGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101361" stop="103369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101661" g_stop="101833" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101834" i_stop="102577" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102578" g_stop="103069" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="664" r_length="491" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101661" e_stop="101833"/>
          <exon e_start="102578" e_stop="103069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTGACAGGTAGCGGCTACGGCAAAGTCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGAGATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTTGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAAAGACCTATGCCTGACTCTAGAGAGTGTTATGAATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGTTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCATGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTATCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACTGGGTACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAATGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102778" stop="101620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102478" g_stop="101920" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102478" e_stop="101920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGACCTCTACCATGACCACCTCTACCTCTAACTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATTCATAACACTCTCTAGAGTCAGGCATAGGTCTTTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCAAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103388" stop="102031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103088" g_stop="102331" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103088" e_stop="102331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCATTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCAGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGATAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACATGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102985" stop="102059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102685" g_stop="102355" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102685" e_stop="102355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGATAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACATGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103457" stop="102199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103157" g_stop="102499" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103157" e_stop="102499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCATTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCAGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGATAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACATGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103977" stop="102665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103677" g_stop="102965" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103677" e_stop="102965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTATAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGTTTTAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTACAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCATTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105458" stop="104681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105158" g_stop="104982" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105158" e_stop="104982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGGTTGAGTGATAGCTATTATTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCACTGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCTTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126057" stop="126833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126357" g_stop="126532" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126357" e_stop="126532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATC-CGCACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="127537" stop="128849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127837" g_stop="128549" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127837" e_stop="128549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTATCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAAAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACAAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAATAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTGTTTACAAACAAAACCAAAGCACCCCAAGGAGATACACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGATTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128057" stop="129314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128357" g_stop="129015" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128357" e_stop="129015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTGTTTACAAACAAAACCAAAGCACCCCAAGGAGATACACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGATTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTAGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTTCATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAT</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="-" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130152" stop="128145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129853" g_stop="129681" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129680" i_stop="128937" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128936" g_stop="128409" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="129853" e_stop="129681"/>
          <exon e_start="128936" e_stop="128409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGCAGGATGTCGGTCAATGCATATGAGGATAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAACCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATCGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACTGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGATAGGGGAAATGGACAGACAAATGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATATTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTATGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATGAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACTAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAATCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGTATCTCCTTGGGGTGCTTTGGTTTTGTTTGTAAACAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128126" stop="129483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128426" g_stop="129183" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128426" e_stop="129183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTGTTTACAAACAAAACCAAAGCACCCCAAGGAGATACACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGATTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTAGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTTCATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAATATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128353" stop="129495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128653" g_stop="129195" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128653" e_stop="129195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACCACCGAAACCGACTTCATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAATATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128529" stop="129455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128829" g_stop="129159" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128829" e_stop="129159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAATATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128736" stop="129894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129036" g_stop="129594" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129036" e_stop="129594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAATATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTTGTCTGTCCATTTCCCCTATCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128740" stop="130765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129040" g_stop="130465" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129040" e_stop="130465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAATATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTTGTCTGTCCATTTCCCCTATCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCGATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGTTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTATCCTCATATGCATTGACCGACATCCTGCCTTGTTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAATGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATA---G--G------TTGGTTGACACTCAATATGCGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAAAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAATGTGTCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTATGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTAGAGGAGTCACTGCCGTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129804" stop="130837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130104" g_stop="130536" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130104" e_stop="130536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAATGTGTCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTATGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTAGAGGAGTCACTGCCGTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGATCTCTACCACGGCTTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315285" ref_strand="-" ref_description="SGN-U315285        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>ccacagccccagtggctggctcagtcgcaccctgtcccgccggtgctggtgttgatgctggcgtagtcgttgctctagttctaaccatctgcgaaatagagtgaagatggtcagataccaatttgtatcacctagataccaattggacccaagtaatagcacgaaagaagaaagaatggaattttccaaaagtcttatagcctctcaaggaaaagtaaaggcatccccctaccgttccttaagactctactagactcgttcttgtgtgatgagaccaacgaacctaatgctctgataccaagtttgtcacgaccaaaaccgggttgcgactggcacccacacttaccctcctatgtgagcgaaccaaccaatctaaccttaacatttcaatataatatcaacagaaagtaatgtggaagacttaaactcattaaatacagaccaattcattaacttctaaaattcaacatctattattccccaaaatctggaagtcatcatcacaagaacatctacgatcaaatgactaaactatgagtattctaaaagctaaaaatacataagaagctagtccatgccggaagttcaaggcatcgagacttgaagaagaagatccagtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaggacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130243" stop="132714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130543" g_stop="131842" g_length="1300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1299" r_length="1299" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131843" i_stop="132052" i_length="210">
            <donor d_prob="0.179" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132053" g_stop="132414" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1300" r_stop="1660" r_length="361" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U315285" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>1662</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315285" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130543" e_stop="131842"/>
          <exon e_start="132053" e_stop="132414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCCCCAGTGGCTGGCTCAGAAGCACCCTGTCCCGCCGGTGCTGGTGTTGGTGTTGGCGAAGTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTTTGACGAGACCAACGAACCTAATGCTCTGATACTAAGTTTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAAATAAAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCAGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGT-CAGGCTAGAAACATTAGCTCACCCTGAATTTCCGATGTAGTAAGATTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAATAAGATAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACACAAAATAGAAATC-A-ATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACACGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAACCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCAGTTCGTGACAC-CCGATCCCCT-AATCTATGTATCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCAGTTCGTCACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATTCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCTGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCAGTTTGTGACACCCGATCCCCTAATAATACGTGTCGGTTTGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCTGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCCTTCCATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTTATCACGCCTTCTTTTATACCAAGGCCTCATTATTAACCAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACACTTAAGCACATAGCAGGGTTTACAATATTATCAATCCATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTATATCCACCGAAGATTA</genome_strand>
        <mrna_strand>CCACAGCCCCAGTGGCTGGCTCAGTCGCACCCTGTCCCGCCGGTGCTGGTGTTGATGCTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACG--A-AAG-AAGAAAGAATGGAATTTTCCAAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCATCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCAAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGTGGAAGACTTAAACTCATTAAATACAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTATGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCGAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAGGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATATGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAT-CTATGTGTTGGTTCGTGACACCTGATCCCTTAA-TCTACGTGTCG..................................................................................................................................................................................................................GTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAA-AAAGAGATTAGGTTTTTACAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0119L20-GRjLS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0119L20.1" temp_strand="+" temp_description="C06HBa0119L20.1  AC219212.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0119L20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="131014" stop="131951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131314" g_stop="131651" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0119L20.1" gen_strand="+" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0119L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131314" e_stop="131651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACACAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACACGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAACCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCAG-TTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>30</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="18861" PGL_stop="27136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18861" e_stop="19469"/>
            <exon e_start="19809" e_stop="19814"/>
            <exon e_start="26937" e_stop="27136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.453" acc_prob="0.000" e_score="0.903"/>
          <exon-intron don_prob="0.900" acc_prob="0.739" e_score="0.833"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="18861" e_stop="19469" e_length="609"/>
          </exon>
          <intron i_serial="1" don_prob="0.453" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19470" i_stop="19808" i_length="339"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="19809" e_stop="19814" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.739">
            <gDNA_intron_boundary i_start="19815" i_stop="26936" i_length="7122"/>
          </intron>
          <exon e_serial="3" e_score="0.915">
            <gDNA_exon_boundary e_start="26937" e_stop="27136" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18861" stop="19469"/>
              <exon start="19809" stop="19814"/>
              <exon start="26937" stop="27136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312906" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCAACCATAACAGCATACGCGAGCCGACAAGGCCGCCACTATTCAAAGCATAATAACATACGTATGCCGACAAGGCTGCCACTACACAATACATAATGATGTACGCAGCCGACAAGGCTGCCCTTGTACAAGCGGACATCCCAAACAAACCATGTCCAGACCATTATCCAAAACATATATATACAACCCACATAATGTCCACAGACCTCTAAGAGTACATTAGTGAAACTCGACGGGACAGGGCCCCGCCATACCCATAGACGAGCAAAAGACTACACAAAAGTTATGTACCAAAACGACTGGGCTCCGGAACAGTGGAGCTCTCCCAATCAGCAGAGTAGATATCCTAGGCGGGAGGATCACCGAACTGCGCGTCTACACCTGCGGGCATGAAACGCAGCCCTCCCGAGGAAAGGGGGGTCAGTACGGACAATGTACTGAGTGTGTAAAGCATAAGGTAAAGATGACAAAATACTAATATGGCAAGTCGAAACAAAATATCGCTACACATATACCTTTTAAGTGAAAATCATGCATATATTTAACATTTAAGGTGCCCAGCTTCCCTAGTAAGGGGCTCGGCAAAATAATCATCACGTCATCTCC : ATCATC : GTGCCCAGCTTCCCTAGTAAAGGGCTCGGCAAAATAATCATCACGTCCTCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATACCCGGCCCTCTAGTGAGGAACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCAGCCCGGGACTCGGTGAAATGATAAATGACTA</gDNA_template>
            <first_frame> H  S  T  I  T  A  Y  A  S  R  Q  G  R  H  Y  S  K  H  N  N  I  R  M  P  T  R  L  P  L  H  N  T  *  *  C  T  Q  P  T  R  L  P  L  Y  K  R  T  S  Q  T  N  H  V  Q  T  I  I  Q  N  I  Y  I  Q  P  T  *  C  P  Q  T  S  K  S  T  L  V  K  L  D  G  T  G  P  R  H  T  H  R  R  A  K  D  Y  T  K  V  M  Y  Q  N  D  W  A  P  E  Q  W  S  S  P  N  Q  Q  S  R  Y  P  R  R  E  D  H  R  T  A  R  L  H  L  R  A  *  N  A  A  L  P  R  K  G  G  S  V  R  T  M  Y  *  V  C  K  A  *  G  K  D  D  K  I  L  I  W  Q  V  E  T  K  Y  R  Y  T  Y  T  F  *  V  K  I  M  H  I  F  N  I  *  G  A  Q  L  P  *  *  G  A  R  Q  N  N  H  H  V  I  S  :  I  I  :  V  P  S  F  P  S  K  G  L  G  K  I  I  I  T  S  S  P  S  S  S  S  S  *  P  S  S  S  P  I  I  Y  I  I  Y  I  P  G  P  L  V  R  N  S  V  T  Y  A  R  N  S  A  R  T  L  P  S  P  G  L  G  E  M  I  N  D   </first_frame>
            <second_frame>  I  Q  P  *  Q  H  T  R  A  D  K  A  A  T  I  Q  S  I  I  T  Y  V  C  R  Q  G  C  H  Y  T  I  H  N  D  V  R  S  R  Q  G  C  P  C  T  S  G  H  P  K  Q  T  M  S  R  P  L  S  K  T  Y  I  Y  N  P  H  N  V  H  R  P  L  R  V  H  *  *  N  S  T  G  Q  G  P  A  I  P  I  D  E  Q  K  T  T  Q  K  L  C  T  K  T  T  G  L  R  N  S  G  A  L  P  I  S  R  V  D  I  L  G  G  R  I  T  E  L  R  V  Y  T  C  G  H  E  T  Q  P  S  R  G  K  G  G  Q  Y  G  Q  C  T  E  C  V  K  H  K  V  K  M  T  K  Y  *  Y  G  K  S  K  Q  N  I  A  T  H  I  P  F  K  *  K  S  C  I  Y  L  T  F  K  V  P  S  F  P  S  K  G  L  G  K  I  I  I  T  S  S  P :   S  S :   C  P  A  S  L  V  K  G  S  A  K  *  S  S  R  P  L  R  H  H  H  H  H  N  H  P  H  H  Q  S  Y  I  *  Y  T  Y  P  A  L  *  *  G  T  R  *  H  M  Q  E  T  P  H  E  H  Y  P  A  R  D  S  V  K  *  *  M  T  </second_frame>
            <third_frame>   F  N  H  N  S  I  R  E  P  T  R  P  P  L  F  K  A  *  *  H  T  Y  A  D  K  A  A  T  T  Q  Y  I  M  M  Y  A  A  D  K  A  A  L  V  Q  A  D  I  P  N  K  P  C  P  D  H  Y  P  K  H  I  Y  T  T  H  I  M  S  T  D  L  *  E  Y  I  S  E  T  R  R  D  R  A  P  P  Y  P  *  T  S  K  R  L  H  K  S  Y  V  P  K  R  L  G  S  G  T  V  E  L  S  Q  S  A  E  *  I  S  *  A  G  G  S  P  N  C  A  S  T  P  A  G  M  K  R  S  P  P  E  E  R  G  V  S  T  D  N  V  L  S  V  *  S  I  R  *  R  *  Q  N  T  N  M  A  S  R  N  K  I  S  L  H  I  Y  L  L  S  E  N  H  A  Y  I  *  H  L  R  C  P  A  S  L  V  R  G  S  A  K  *  S  S  R  H  L   : H  H   : R  A  Q  L  P  *  *  R  A  R  Q  N  N  H  H  V  L  S  V  I  I  I  I  I  T  I  L  I  T  N  H  I  Y  N  I  H  T  R  P  S  S  E  E  L  G  D  I  C  K  K  L  R  T  N  I  T  Q  P  G  T  R  *  N  D  K  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19090" stop="19341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTGQGPAIPIDEQKTTQKLCTKTTGLRNSGALPISRVDILGGRITELRVYTCGHETQPSRGKGGQYGQCTECVKHKVKMTKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18874" stop="19086"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHTRADKAATIQSIITYVCRQGCHYTIHNDVRSRQGCPCTSGHPKQTMSRPLSKTYIYNPHNVHRPLRVH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19059" stop="19256"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPQTSKSTLVKLDGTGPRHTHRRAKDYTKVMYQNDWAPEQWSSPNQQSRYPRREDHRTARLHLRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24445" e_stop="25042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="24445" e_stop="25042" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24445" stop="25042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATGGTTCTATCAACTCAGACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGCATACACACTTCGGGAGAATAGTGATAATATACCTGTGATCACATTAGGTGACGCCTCCTGATCTTGCCTATTAGTCAAAGCATATATACGGTTTGAGGGACCGCTAGAACTGGAAGCTCCACCACGTCCACTACCACGGCCTGCTGGTGCCTGAATACCCTGCCCTGTAGGGCGCATAGCCACAGAAGAAGATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCACCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGACGGCCGCAAGAAAAACACGCACCTATAGCCCAACGACATTCCCCATGATGGGACTTACCACAACGAGAACACCGAGGCAAAGGTGGCCTCGACTGGCTCAAACCCCTGCCCATCTGTGACCCTAACGCCCTAGAGCTCTGACCAGCTTCCGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTGTGCTGGCTGGGAAGAAAATCTAACATGCT</gDNA_template>
            <first_frame> S  N  G  S  I  N  S  D  S  I  P  I  L  L  A  T  K  G  D  I  Y  D  K  V  E  P  G  S  I  N  A  Y  T  L  R  E  N  S  D  N  I  P  V  I  T  L  G  D  A  S  *  S  C  L  L  V  K  A  Y  I  R  F  E  G  P  L  E  L  E  A  P  P  R  P  L  P  R  P  A  G  A  *  I  P  C  P  V  G  R  I  A  T  E  E  D  E  P  A  T  D  P  V  G  C  A  I  P  P  A  L  P  L  R  *  H  S  L  I  V  W  P  *  R  P  Q  E  K  H  A  P  I  A  Q  R  H  S  P  *  W  D  L  P  Q  R  E  H  R  G  K  G  G  L  D  W  L  K  P  L  P  I  C  D  P  N  A  L  E  L  *  P  A  S  E  Y  P  I  R  S  N  P  L  P  M  K  R  G  G  A  L  C  A  G  W  E  E  N  L  T  C  </first_frame>
            <second_frame>  Q  M  V  L  S  T  Q  T  L  F  R  S  Y  *  Q  Q  R  E  I  Y  M  I  R  W  N  L  G  L  S  M  H  T  H  F  G  R  I  V  I  I  Y  L  *  S  H  *  V  T  P  P  D  L  A  Y  *  S  K  H  I  Y  G  L  R  D  R  *  N  W  K  L  H  H  V  H  Y  H  G  L  L  V  P  E  Y  P  A  L  *  G  A  *  P  Q  K  K  M  N  Q  Q  R  T  L  *  A  V  P  Y  H  L  H  Y  L  *  G  D  T  P  S  *  Y  G  P  D  G  R  K  K  N  T  H  L  *  P  N  D  I  P  H  D  G  T  Y  H  N  E  N  T  E  A  K  V  A  S  T  G  S  N  P  C  P  S  V  T  L  T  P  *  S  S  D  Q  L  P  N  I  P  Y  D  R  T  P  Y  P  *  N  V  G  V  H  S  V  L  A  G  K  K  I  *  H  A </second_frame>
            <third_frame>   K  W  F  Y  Q  L  R  L  Y  S  D  P  T  S  N  K  G  R  Y  I  *  *  G  G  T  W  V  Y  Q  C  I  H  T  S  G  E  *  *  *  Y  T  C  D  H  I  R  *  R  L  L  I  L  P  I  S  Q  S  I  Y  T  V  *  G  T  A  R  T  G  S  S  T  T  S  T  T  T  A  C  W  C  L  N  T  L  P  C  R  A  H  S  H  R  R  R  *  T  S  N  G  P  C  R  L  C  H  T  T  C  T  T  S  K  V  T  L  P  H  S  M  A  L  T  A  A  R  K  T  R  T  Y  S  P  T  T  F  P  M  M  G  L  T  T  T  R  T  P  R  Q  R  W  P  R  L  A  Q  T  P  A  H  L  *  P  *  R  P  R  A  L  T  S  F  R  I  S  H  T  I  E  P  P  T  H  E  T  W  G  C  T  L  C  W  L  G  R  K  S  N  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24732" stop="24929"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSNGPCRLCHTTCTTSKVTLPHSMALTAARKTRTYSPTTFPMMGLTTTRTPRQRWPRLAQTPAHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23471" e_stop="24200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="23471" e_stop="24200" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23471" stop="24200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATGATCTGCATGCTCCTCTTCTGAACGTGAATAGACCAGAATATCGTCTATAAATACAATAACAAACATATCAAGGAATGGTTTAAATACTCGATTCATTAAATCCATGAACACCGCTGGAGCATTAGTCAGCCCAAAAGACAGCACTCTAAACTCATAATGCCCATATCGGGTCCGGAATGTCGTCTTTTGAATATCTGCCTCCCTTACCTGCACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACACTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTATTCTTTATTGTTACTTTGTTCAACTGCCTATAATCAATGCACATCCGCAGCGACCCATCCTTCTTCCTCATAAACAGTACCGGTGCTCCCCAAGGTGACGTACTAGGCCTGATGAAGCCCTTTTCTAGCAAATCCCTCAATTGCTGTTTCAATTCTTTCAACTCAGCAGGTGCCATTCTATAAGGAGGTATAGATATAGGCTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATCAGGAAATTCATTAACTATCGGGACTGATTGAAGAGTCGGTGCCTCTGCCTTTATGTCATGCACCCGAATCAGATGGTAAATATAGCCTTTTCTAACCATCTTCCCAGCCTTGAGGTATGAAATGAACTTACCTTT</gDNA_template>
            <first_frame> L  N  D  L  H  A  P  L  L  N  V  N  R  P  E  Y  R  L  *  I  Q  *  Q  T  Y  Q  G  M  V  *  I  L  D  S  L  N  P  *  T  P  L  E  H  *  S  A  Q  K  T  A  L  *  T  H  N  A  H  I  G  S  G  M  S  S  F  E  Y  L  P  P  L  P  A  P  D  D  N  L  T  A  S  L  S  L  K  N  T  L  H  P  A  T  G  Q  I  D  R  Q  S  L  G  G  D  T  Y  S  L  L  L  L  C  S  T  A  Y  N  Q  C  T  S  A  A  T  H  P  S  S  S  *  T  V  P  V  L  P  K  V  T  Y  *  A  *  *  S  P  F  L  A  N  P  S  I  A  V  S  I  L  S  T  Q  Q  V  P  F  Y  K  E  V  *  I  *  A  G  Y  L  A  V  H  L  *  *  T  L  S  P  V  L  E  E  G  L  E  V  P  R  G  I  H  Q  E  I  H  *  L  S  G  L  I  E  E  S  V  P  L  P  L  C  H  A  P  E  S  D  G  K  Y  S  L  F  *  P  S  S  Q  P  *  G  M  K  *  T  Y  L  </first_frame>
            <second_frame>  *  M  I  C  M  L  L  F  *  T  *  I  D  Q  N  I  V  Y  K  Y  N  N  K  H  I  K  E  W  F  K  Y  S  I  H  *  I  H  E  H  R  W  S  I  S  Q  P  K  R  Q  H  S  K  L  I  M  P  I  S  G  P  E  C  R  L  L  N  I  C  L  P  Y  L  H  L  M  I  T  *  P  Q  V  Y  L  *  K  T  L  C  T  L  Q  L  V  K  *  I  V  N  P  W  E  G  I  P  I  L  Y  C  Y  F  V  Q  L  P  I  I  N  A  H  P  Q  R  P  I  L  L  P  H  K  Q  Y  R  C  S  P  R  *  R  T  R  P  D  E  A  L  F  *  Q  I  P  Q  L  L  F  Q  F  F  Q  L  S  R  C  H  S  I  R  R  Y  R  Y  R  L  G  I  W  Q  Y  I  Y  S  K  L  Y  L  P  F  W  R  K  A  W  K  F  L  G  E  Y  I  R  K  F  I  N  Y  R  D  *  L  K  S  R  C  L  C  L  Y  V  M  H  P  N  Q  M  V  N  I  A  F  S  N  H  L  P  S  L  E  V  *  N  E  L  T  F </second_frame>
            <third_frame>   K  *  S  A  C  S  S  S  E  R  E  *  T  R  I  S  S  I  N  T  I  T  N  I  S  R  N  G  L  N  T  R  F  I  K  S  M  N  T  A  G  A  L  V  S  P  K  D  S  T  L  N  S  *  C  P  Y  R  V  R  N  V  V  F  *  I  S  A  S  L  T  C  T  *  *  *  P  D  R  K  S  I  F  E  K  H  F  A  P  C  N  W  S  N  R  S  S  I  L  G  R  G  Y  L  F  F  I  V  T  L  F  N  C  L  *  S  M  H  I  R  S  D  P  S  F  F  L  I  N  S  T  G  A  P  Q  G  D  V  L  G  L  M  K  P  F  S  S  K  S  L  N  C  C  F  N  S  F  N  S  A  G  A  I  L  *  G  G  I  D  I  G  W  V  S  G  S  T  S  I  V  N  S  I  S  R  S  G  G  R  P  G  S  S  S  G  N  T  S  G  N  S  L  T  I  G  T  D  *  R  V  G  A  S  A  F  M  S  C  T  R  I  R  W  *  I  *  P  F  L  T  I  F  P  A  L  R  Y  E  M  N  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23627" stop="23857"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNAHIGSGMSSFEYLPPLPAPDDNLTASLSLKNTLHPATGQIDRQSLGGDTYSLLLLCSTAYNQCTSAATHPSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25259" PGL_stop="25064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25259" e_stop="25064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="25259" e_stop="25064" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25259" stop="25064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCGTTATGTGATGGGATTGGATTGTTATCTGATTGACGGTTGTATGGCAGTGAATCTTCAGCCAGGTATGGACATTGCTCGGGTGCAGGCATATGCACAGGGGGTAGAGGATCGGCACCAGGGACATCAGCCAGATAGAGATTATAATAGAGGCCAGCATAAGAGGGCTAGATCAGCAGGTTATCCTGACGAGT</gDNA_template>
            <first_frame> N  R  Y  V  M  G  L  D  C  Y  L  I  D  G  C  M  A  V  N  L  Q  P  G  M  D  I  A  R  V  Q  A  Y  A  Q  G  V  E  D  R  H  Q  G  H  Q  P  D  R  D  Y  N  R  G  Q  H  K  R  A  R  S  A  G  Y  P  D  E  </first_frame>
            <second_frame>  I  V  M  *  W  D  W  I  V  I  *  L  T  V  V  W  Q  *  I  F  S  Q  V  W  T  L  L  G  C  R  H  M  H  R  G  *  R  I  G  T  R  D  I  S  Q  I  E  I  I  I  E  A  S  I  R  G  L  D  Q  Q  V  I  L  T  S </second_frame>
            <third_frame>   S  L  C  D  G  I  G  L  L  S  D  *  R  L  Y  G  S  E  S  S  A  R  Y  G  H  C  S  G  A  G  I  C  T  G  G  R  G  S  A  P  G  T  S  A  R  *  R  L  *  *  R  P  A  *  E  G  *  I  S  R  L  S  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25259" stop="25065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRYVMGLDCYLIDGCMAVNLQPGMDIARVQAYAQGVEDRHQGHQPDRDYNRGQHKRARSAGYPDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28147" PGL_stop="27693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28147" e_stop="27693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="28147" e_stop="27693" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28147" stop="27693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGAGAAACCAACACTGCAACTCTTGGCCAGCAGCTGCAAATAATTTGGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTTTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACAGAACTGTTTTGGGGAGGGGGCTGTTTAATATGACTCTTTGGGTTATATGTGTTA</gDNA_template>
            <first_frame> K  W  R  N  Q  H  C  N  S  W  P  A  A  A  N  N  L  V  S  N  L  L  V  W  C  V  N  S  L  E  Y  P  C  *  L  S  I  N  F  K  K  G  A  *  P  V  A  *  E  V  C  F  S  Y  *  M  C  *  V  *  M  E  T  I  I  G  L  L  V  V  S  C  W  C  L  G  F  F  D  *  S  K  L  Q  E  N  S  I  L  A  L  C  I  C  *  M  *  L  *  V  Y  T  P  K  D  E  Y  D  K  V  D  V  L  R  I  I  K  *  V  I  A  R  C  V  V  A  S  L  L  W  L  P  R  Q  N  C  F  G  E  G  A  V  *  Y  D  S  L  G  Y  M  C   </first_frame>
            <second_frame>  N  G  E  T  N  T  A  T  L  G  Q  Q  L  Q  I  I  W  L  V  I  S  L  F  G  V  L  I  L  *  N  T  L  V  N  Y  P  L  I  L  R  R  G  R  D  Q  *  L  R  K  F  V  L  V  I  E  C  A  K  Y  E  W  K  P  *  S  D  Y  *  W  C  R  V  G  A  W  A  F  L  I  K  A  N  C  R  K  I  L  F  W  H  Y  V  Y  V  E  C  D  Y  E  Y  I  L  Q  R  M  N  T  I  R  *  M  C  C  E  L  *  N  E  L  S  L  G  V  S  L  L  R  C  Y  G  C  R  D  R  T  V  L  G  R  G  L  F  N  M  T  L  W  V  I  C  V  </second_frame>
            <third_frame>   M  E  K  P  T  L  Q  L  L  A  S  S  C  K  *  F  G  *  *  S  P  C  L  V  C  *  F  F  R  I  P  L  L  I  I  H  *  F  *  E  G  G  V  T  S  S  L  G  S  L  F  *  L  L  N  V  L  S  M  N  G  N  H  N  R  I  I  S  G  V  V  L  V  L  G  L  F  *  L  K  Q  T  A  G  K  F  Y  F  G  I  M  Y  M  L  N  V  I  M  S  I  Y  S  K  G  *  I  R  *  G  R  C  V  A  N  Y  K  M  S  Y  R  S  V  C  R  C  F  A  A  M  V  A  E  T  E  L  F  W  G  G  G  C  L  I  *  L  F  G  L  Y  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0119L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="79812" PGL_stop="80265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79812" e_stop="80265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="79812" e_stop="80265" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79812" stop="80265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGAGAAACCAACCCTGCAACTCTTGGCCAGCAGCTGCAAATAATTTGGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCTTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCTATAGCTTAGGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAACGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGACTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTGGCATTATTTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATGTGTTGCGAAATATAAAATGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACGGAACTGTTTTGGGGAGGGGGCTGTTTAATATGATTCGTTGGTTTATATGTGTTA</gDNA_template>
            <first_frame> K  W  R  N  Q  P  C  N  S  W  P  A  A  A  N  N  L  V  S  N  L  L  V  W  C  V  N  S  L  E  Y  L  C  *  L  S  I  N  F  K  K  G  A  *  P  I  A  *  E  V  C  F  S  Y  *  M  C  *  V  *  T  E  T  I  I  G  L  L  V  V  S  C  W  C  L  D  C  F  D  *  S  K  L  Q  E  N  S  I  W  H  Y  L  Y  V  E  C  D  Y  E  Y  I  L  Q  R  M  N  T  I  R  *  M  C  C  E  I  *  N  E  L  S  L  G  V  S  L  L  R  C  Y  G  C  R  D  G  T  V  L  G  R  G  L  F  N  M  I  R  W  F  I  C  V  </first_frame>
            <second_frame>  N  G  E  T  N  P  A  T  L  G  Q  Q  L  Q  I  I  W  L  V  I  S  L  F  G  V  L  I  L  *  N  T  F  V  N  Y  P  L  I  L  R  R  G  R  D  L  *  L  R  K  F  V  L  V  I  E  C  A  K  Y  E  R  K  P  *  S  D  Y  *  W  C  R  V  G  A  W  T  V  L  I  K  A  N  C  R  K  I  L  F  G  I  I  Y  M  L  N  V  I  M  S  I  Y  S  K  G  *  I  R  *  G  R  C  V  A  K  Y  K  M  S  Y  R  S  V  C  R  C  F  A  A  M  V  A  E  T  E  L  F  W  G  G  G  C  L  I  *  F  V  G  L  Y  V  L </second_frame>
            <third_frame>   M  E  K  P  T  L  Q  L  L  A  S  S  C  K  *  F  G  *  *  S  P  C  L  V  C  *  F  F  R  I  P  L  L  I  I  H  *  F  *  E  G  G  V  T  Y  S  L  G  S  L  F  *  L  L  N  V  L  S  M  N  G  N  H  N  R  I  I  S  G  V  V  L  V  L  G  L  F  *  L  K  Q  T  A  G  K  F  Y  L  A  L  F  I  C  *  M  *  L  *  V  Y  T  P  K  D  E  Y  D  K  V  D  V  L  R  N  I  K  *  V  I  A  R  C  V  V  A  S  L  L  W  L  P  R  R  N  C  F  G  E  G  A  V  *  Y  D  S  L  V  Y  M  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0119L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="82608" PGL_stop="82803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82608" e_stop="82803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="82608" e_stop="82803" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82608" stop="82803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCGTTATGTGATGGGATTGGATCGTTATCTGATTGACGGTTGTATGGCAGTGACTCTTCATCCAGGTATGGACATTGCTCGGGTGCAGGCATATGCACAGGGGGTAGAGGATCGGCACCGGGGACGTCAGCCAGATAGAGATTATAATAGAGGCCAGTAGAAGAGGGCTAGATCAGCAGGTTATCCTGACGAGT</gDNA_template>
            <first_frame> H  R  Y  V  M  G  L  D  R  Y  L  I  D  G  C  M  A  V  T  L  H  P  G  M  D  I  A  R  V  Q  A  Y  A  Q  G  V  E  D  R  H  R  G  R  Q  P  D  R  D  Y  N  R  G  Q  *  K  R  A  R  S  A  G  Y  P  D  E  </first_frame>
            <second_frame>  I  V  M  *  W  D  W  I  V  I  *  L  T  V  V  W  Q  *  L  F  I  Q  V  W  T  L  L  G  C  R  H  M  H  R  G  *  R  I  G  T  G  D  V  S  Q  I  E  I  I  I  E  A  S  R  R  G  L  D  Q  Q  V  I  L  T  S </second_frame>
            <third_frame>   S  L  C  D  G  I  G  S  L  S  D  *  R  L  Y  G  S  D  S  S  S  R  Y  G  H  C  S  G  A  G  I  C  T  G  G  R  G  S  A  P  G  T  S  A  R  *  R  L  *  *  R  P  V  E  E  G  *  I  S  R  L  S  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0119L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83422" PGL_stop="82825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83422" e_stop="82825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="83422" e_stop="82825" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83422" stop="82825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATGGTTCTATCAACTAAGACTCTATTCCGATCCTACTAGCAACAAAGGGAGATATATATGATAAGGTGGAACCTGGGTCTATCAATGCATACACACTTTGGGAGAATAGTGATAATATACCTATGATCACATTAGGTGACGCCTCCTGATCTTGCCTATTAGTTAAAGCATATATACGGTTCGAGGGACCGCTAGAACTGGAAGCTCCACCACATCCTCTACCACGGCCTGCTGGCGCCTGAATACCCTGCCCCGTAGGGTGCATAGCCACAGAAGAAGATGAACCAGCAACGGACCCTGTAGGCTGTGCCATACCATCTGCACTACCTCTAAGGTGACACTCCCTCATAGTATGGCCCTGAAGGCCGCAAGAAAAACACGCACCTGTAGCCCAACGACATTCCCCAGGATGGGACTTACCACAACGAGAACACCGAGGCAAAGGTGGCCTCAACTAGCTCAAACCCTTGCCCATCTGTGACCCTGACGCCCTAAAGCTCTGACCAGCTTCCGAATATCCCATACGATCGAACCCCCTACCCATGAAACGTGGGGGTGCACTCTATGCTGGCTGGGAAGAAAATCTAACATGCT</gDNA_template>
            <first_frame> S  N  G  S  I  N  *  D  S  I  P  I  L  L  A  T  K  G  D  I  Y  D  K  V  E  P  G  S  I  N  A  Y  T  L  W  E  N  S  D  N  I  P  M  I  T  L  G  D  A  S  *  S  C  L  L  V  K  A  Y  I  R  F  E  G  P  L  E  L  E  A  P  P  H  P  L  P  R  P  A  G  A  *  I  P  C  P  V  G  C  I  A  T  E  E  D  E  P  A  T  D  P  V  G  C  A  I  P  S  A  L  P  L  R  *  H  S  L  I  V  W  P  *  R  P  Q  E  K  H  A  P  V  A  Q  R  H  S  P  G  W  D  L  P  Q  R  E  H  R  G  K  G  G  L  N  *  L  K  P  L  P  I  C  D  P  D  A  L  K  L  *  P  A  S  E  Y  P  I  R  S  N  P  L  P  M  K  R  G  G  A  L  Y  A  G  W  E  E  N  L  T  C  </first_frame>
            <second_frame>  Q  M  V  L  S  T  K  T  L  F  R  S  Y  *  Q  Q  R  E  I  Y  M  I  R  W  N  L  G  L  S  M  H  T  H  F  G  R  I  V  I  I  Y  L  *  S  H  *  V  T  P  P  D  L  A  Y  *  L  K  H  I  Y  G  S  R  D  R  *  N  W  K  L  H  H  I  L  Y  H  G  L  L  A  P  E  Y  P  A  P  *  G  A  *  P  Q  K  K  M  N  Q  Q  R  T  L  *  A  V  P  Y  H  L  H  Y  L  *  G  D  T  P  S  *  Y  G  P  E  G  R  K  K  N  T  H  L  *  P  N  D  I  P  Q  D  G  T  Y  H  N  E  N  T  E  A  K  V  A  S  T  S  S  N  P  C  P  S  V  T  L  T  P  *  S  S  D  Q  L  P  N  I  P  Y  D  R  T  P  Y  P  *  N  V  G  V  H  S  M  L  A  G  K  K  I  *  H  A </second_frame>
            <third_frame>   K  W  F  Y  Q  L  R  L  Y  S  D  P  T  S  N  K  G  R  Y  I  *  *  G  G  T  W  V  Y  Q  C  I  H  T  L  G  E  *  *  *  Y  T  Y  D  H  I  R  *  R  L  L  I  L  P  I  S  *  S  I  Y  T  V  R  G  T  A  R  T  G  S  S  T  T  S  S  T  T  A  C  W  R  L  N  T  L  P  R  R  V  H  S  H  R  R  R  *  T  S  N  G  P  C  R  L  C  H  T  I  C  T  T  S  K  V  T  L  P  H  S  M  A  L  K  A  A  R  K  T  R  T  C  S  P  T  T  F  P  R  M  G  L  T  T  T  R  T  P  R  Q  R  W  P  Q  L  A  Q  T  L  A  H  L  *  P  *  R  P  K  A  L  T  S  F  R  I  S  H  T  I  E  P  P  T  H  E  T  W  G  C  T  L  C  W  L  G  R  K  S  N  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83135" stop="82938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSNGPCRLCHTICTTSKVTLPHSMALKAARKTRTCSPTTFPRMGLTTTRTPRQRWPQLAQTLAHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="84385" PGL_stop="83656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84385" e_stop="83656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="84385" e_stop="83656" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84385" stop="83656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATTGTCTGCATGCTCCTCTTCTGAACGTGAATAGACAAGAATATCGTCTATAAATACAATAACAACAATATCAAGGAATGGTTTAAATACTCGATTCATTAAATCCATGAACACCGCTGGAGCATTAGTCAGCCCAAAAGACAGCACTCTAAACTCATAATGCCCATATCGGGTCCGGAATGCCGTCTTTGGAATATCTACCTCCCTTTCCCGCACCTGATGATAACCTGACCGCAAGTCTATCTTTGAAAAACACTTTGCACCCTGCAACTGGTCAAATAGATCGTCAATCCTTGGGAGGGGATACCTGTTCTTTATTGTTACTTTGTTCAACTGCCTATAATCAATGCACATCCGCAGCGACCCATCCTTCTTCCTCACAAACAGTACCGGTGCTCCCCAAGGTGACATATTAGGCCTGATGAAGCCTTTTTCTAGCAAATCCCTTAATTGCTCTTTCAATTCTTTCAACTCAGCAGGTGCCATTTTATAAGGAGGTATAGATATAGGCTGGGTATCTGGCAGTACATCTATAGTAAACTCTATCTCCCGTTCTGGAGGAAGGCCTGGAAGTTCCTCGGGGAATACATTGGGAAATTCATTAACTACCGGGACTGATTGAAGAGTCGGTGCCTCTGCCTTTATGTCATGCACCCGAATGAGATGGTAAATATAGCCTTTTCTAACCATCTTCCCGGCCTTGAGGTATGAAATGAACTTACCTTT</gDNA_template>
            <first_frame> L  N  C  L  H  A  P  L  L  N  V  N  R  Q  E  Y  R  L  *  I  Q  *  Q  Q  Y  Q  G  M  V  *  I  L  D  S  L  N  P  *  T  P  L  E  H  *  S  A  Q  K  T  A  L  *  T  H  N  A  H  I  G  S  G  M  P  S  L  E  Y  L  P  P  F  P  A  P  D  D  N  L  T  A  S  L  S  L  K  N  T  L  H  P  A  T  G  Q  I  D  R  Q  S  L  G  G  D  T  C  S  L  L  L  L  C  S  T  A  Y  N  Q  C  T  S  A  A  T  H  P  S  S  S  Q  T  V  P  V  L  P  K  V  T  Y  *  A  *  *  S  L  F  L  A  N  P  L  I  A  L  S  I  L  S  T  Q  Q  V  P  F  Y  K  E  V  *  I  *  A  G  Y  L  A  V  H  L  *  *  T  L  S  P  V  L  E  E  G  L  E  V  P  R  G  I  H  W  E  I  H  *  L  P  G  L  I  E  E  S  V  P  L  P  L  C  H  A  P  E  *  D  G  K  Y  S  L  F  *  P  S  S  R  P  *  G  M  K  *  T  Y  L  </first_frame>
            <second_frame>  *  I  V  C  M  L  L  F  *  T  *  I  D  K  N  I  V  Y  K  Y  N  N  N  N  I  K  E  W  F  K  Y  S  I  H  *  I  H  E  H  R  W  S  I  S  Q  P  K  R  Q  H  S  K  L  I  M  P  I  S  G  P  E  C  R  L  W  N  I  Y  L  P  F  P  H  L  M  I  T  *  P  Q  V  Y  L  *  K  T  L  C  T  L  Q  L  V  K  *  I  V  N  P  W  E  G  I  P  V  L  Y  C  Y  F  V  Q  L  P  I  I  N  A  H  P  Q  R  P  I  L  L  P  H  K  Q  Y  R  C  S  P  R  *  H  I  R  P  D  E  A  F  F  *  Q  I  P  *  L  L  F  Q  F  F  Q  L  S  R  C  H  F  I  R  R  Y  R  Y  R  L  G  I  W  Q  Y  I  Y  S  K  L  Y  L  P  F  W  R  K  A  W  K  F  L  G  E  Y  I  G  K  F  I  N  Y  R  D  *  L  K  S  R  C  L  C  L  Y  V  M  H  P  N  E  M  V  N  I  A  F  S  N  H  L  P  G  L  E  V  *  N  E  L  T  F </second_frame>
            <third_frame>   K  L  S  A  C  S  S  S  E  R  E  *  T  R  I  S  S  I  N  T  I  T  T  I  S  R  N  G  L  N  T  R  F  I  K  S  M  N  T  A  G  A  L  V  S  P  K  D  S  T  L  N  S  *  C  P  Y  R  V  R  N  A  V  F  G  I  S  T  S  L  S  R  T  *  *  *  P  D  R  K  S  I  F  E  K  H  F  A  P  C  N  W  S  N  R  S  S  I  L  G  R  G  Y  L  F  F  I  V  T  L  F  N  C  L  *  S  M  H  I  R  S  D  P  S  F  F  L  T  N  S  T  G  A  P  Q  G  D  I  L  G  L  M  K  P  F  S  S  K  S  L  N  C  S  F  N  S  F  N  S  A  G  A  I  L  *  G  G  I  D  I  G  W  V  S  G  S  T  S  I  V  N  S  I  S  R  S  G  G  R  P  G  S  S  S  G  N  T  L  G  N  S  L  T  T  G  T  D  *  R  V  G  A  S  A  F  M  S  C  T  R  M  R  W  *  I  *  P  F  L  T  I  F  P  A  L  R  Y  E  M  N  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84229" stop="83966"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNAHIGSGMPSLEYLPPFPAPDDNLTASLSLKNTLHPATGQIDRQSLGGDTCSLLLLCSTAYNQCTSAATHPSSSQTVPVLPKVTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="103677" PGL_stop="101058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103677" e_stop="101058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="103677" e_stop="101058" e_length="2620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103677" stop="102965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103157" stop="102499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103088" stop="102331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102685" stop="102355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102478" stop="101920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102474" stop="101058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTATAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGTTTTAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTACAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCATTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCAGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGATAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACATGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGACCTCTACCATGACCACCTCTACCTCTAACTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATTCATAACACTCTCTAGAGTCAGGCATAGGTCTTTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCAAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATCTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGACTTTGCCGTAGCCGCTACCTGTCAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAATGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTTTTCCTGTCTCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTCGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGAGCATCCATACGGAGAGCCGCAGTAGCCGCATGTTGTACCTCCGGACCCTGAGGTGCTGGAGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATGTCTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  I  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  F  *  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  T  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  I  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  K  N  G  A  S  T  Q  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  Q  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  *  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  L  R  S  P  R  E  S  I  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  T  S  T  M  T  T  S  T  S  N  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  F  I  T  L  S  R  V  R  H  R  S  F  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  S  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  L  C  R  S  R  Y  L  S  G  *  N  P  Q  L  *  P  Q  P  L  H  K  M  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  L  F  P  V  S  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  S  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  M  T  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  K  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  A  Y  F  Q  W  S  I  H  T  E  S  R  S  S  R  M  L  Y  L  R  T  L  R  C  W  S  R  K  H  W  R  C  L  T  L  I  R  *  P  T  K  I  S  K  N  L  I  D  H  V  W  G  R  L  G  R  Q  S  L  I  L  Y  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  *  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  F  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  Q  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  Q  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  H  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  K  M  G  R  V  P  S  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  M  I  R  T  R  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  D  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  H  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  V  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  F  V  C  L  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  S  *  H  S  L  E  S  G  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  Q  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  L  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  Q  A  E  I  R  N  S  D  L  N  P  F  T  K  *  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  F  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  R  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  A  S  I  R  R  A  A  V  A  A  C  C  T  S  G  P  *  G  A  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  M  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  Y  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  V  L  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  Y  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  K  E  E  D  T  C  S  L  W  L  P  C  S  T  A  D  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  I  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  I  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  M  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  S  P  P  P  I  S  Q  G  K  H  N  N  G  P  F  R  L  F  V  C  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  D  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  *  V  F  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  K  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  I  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  T  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  C  L  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  A  H  D  S  Q  P  E  N  H  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  *  A  L  *  S  D  E  E  T  C  L  F  P  M  E  H  P  Y  G  E  P  Q  *  P  H  V  V  P  P  D  P  E  V  L  E  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  K  Q  E  P  D  *  S  C  L  G  *  V  G  E  A  I  P  H  S  V  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102246" stop="101992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPAILVTTITSTTTSSRITTSTMTTSTSNYWGSITLFGTIPPNMSSLPTFITLSRVRHRSFREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101445" stop="101191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIIGILRFSTLEDWRFQFQELTKKFMLIICHYRPCSQTRKRAYFQWSIHTESRSSRMLYLRTLRCWSRKHWRCLTLIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102950" stop="102705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIKMGRVPSSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLARRKEMIRTRLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103264" stop="103022"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQSLAHPLPVFSIDDNRISSQSYRRHKHLVTDRTSHQCKEEDTCSLWLPCSTADSLCTSENSHPSSLQTKPEHPKEMHLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101756" stop="101547"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSFFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102972" stop="102772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYKNGASTQFKINTEVNIPIWWHTRKICREHIQKLTDHRNRLNRRHLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103481" stop="103284"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSSLLLEYISISSINTITKRSKYGFKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="101060" PGL_stop="101587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101060" e_stop="101587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="101060" e_stop="101587" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101060" stop="101587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGACATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCTCCAGCACCTCAGGGTCCGGAGGTACAACATGCGGCTACTGCGGCTCTCCGTATGGATGCTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCGAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  T  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  L  Q  H  L  R  V  R  R  Y  N  M  R  L  L  R  L  S  V  W  M  L  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  N  M  N  F  L  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  E  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </first_frame>
            <second_frame>  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  R  H  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  S  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  Y  G  C  S  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  T  *  T  F  *  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </second_frame>
            <third_frame>   T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  D  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  G  P  E  V  Q  H  A  A  T  A  A  L  R  M  D  A  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  R  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101062" stop="101586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPPPTEEVVREGEEGETEQVQNEGLPPQPTPDMINQVLAYLSGLSDQGQTPPVFSAPAPQGPEVQHAATAALRMDAPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFRGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="101661" PGL_stop="103069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101661" e_stop="101833"/>
            <exon e_start="102578" e_stop="103069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="101661" e_stop="101833" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101834" i_stop="102577" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="102578" e_stop="103069" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101661" stop="101833"/>
              <exon start="102578" stop="103069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTGACAGGTAGCGGCTACGGCAAAGTCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTATCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACTGGGTACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAATGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  V  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  I  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  M  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  *  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  S  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  L  V  R  I  I  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  F  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  C  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  D  R  *  R  L  R  Q  S  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  W  *  R  Y  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  W  C  V  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  W  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  N  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101803" stop="101833"/>
                    <exon start="102578" stop="103068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVAATAKSFQEMVDFDVILGMTWLSPQFAILDCNAKMVTLSKPGTDPLVWEGDYTSNLVRIISFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLELGTRPIFIPPYRMAPAELRELKAQLQELLNKCFIRPSASPWGAPVLFVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="105158" PGL_stop="104982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105158" e_stop="104982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="105158" e_stop="104982" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105158" stop="104982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGGTTGAGTGATAGCTATTATTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCACTGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCTTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  S  A  S  N  G  A  I  S  M  V  E  *  *  L  L  L  *  E  N  S  A  K  G  K  K  L  S  H  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  F  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  H  I  V  P  Q  M  G  P  Y  Q  W  L  S  D  S  Y  Y  C  R  R  T  L  L  R  V  R  S  Y  P  T  D  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  *  C  L  K  W  G  H  I  N  G  *  V  I  A  I  I  V  G  E  L  C  *  G  *  E  A  I  P  L  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  L  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0119L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="126357" PGL_stop="126532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126357" e_stop="126532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="126357" e_stop="126532" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126357" stop="126532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCCGCACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  R  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  S  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  A  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  R  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  P  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0119L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="127837" PGL_stop="130536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127837" e_stop="130536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="127837" e_stop="130536" e_length="2700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127837" stop="128549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128357" stop="129015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128426" stop="129183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128653" stop="129195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128829" stop="129159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129036" stop="129594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129040" stop="130465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130104" stop="130536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTATCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAAAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACAAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAATAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTGTTTACAAACAAAACCAAAGCACCCCAAGGAGATACACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGATTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTAGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTTCATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCATAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAATATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTTGTCTGTCCATTTCCCCTATCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCGATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGTTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTATCCTCATATGCATTGACCGACATCCTGCCTTGTTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAATGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTTGGTTGACACTCAATATGCGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAAAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAATGTGTCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTATGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTAGAGGAGTCACTGCCGTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGATCTCTACCACGGCTTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  I  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  K  V  Q  I  W  L  K  N  P  I  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  H  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  *  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  V  Y  K  Q  N  Q  S  T  P  R  R  Y  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  V  N  T  E  I  N  I  P  I  *  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  T  D  H  R  N  R  L  H  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  I  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  I  C  L  S  I  S  P  I  M  L  *  C  S  G  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  D  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  I  L  I  C  I  D  R  H  P  A  L  F  *  D  Q  E  L  I  P  F  P  I  P  Q  C  P  R  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  L  V  D  T  Q  Y  A  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  K  N  H  K  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  *  D  V  E  M  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  L  M  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  F  L  P  L  L  F </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  N  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  L  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  Q  K  D  I  T  T  N  S  *  C  P  Y  L  I  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  L  F  T  N  K  T  K  A  P  Q  G  D  T  L  G  L  I  K  P  L  F  N  N  S  *  S  W  D  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  S  G  I  P  G  R  S  A  R  N  T  S  R  N  S  R  T  T  E  T  D  F  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  I  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  Y  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  F  P  L  S  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  V  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  S  S  Y  A  L  T  D  I  L  P  C  S  R  I  K  N  S  S  L  F  L  S  L  N  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  W  L  T  L  N  M  R  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  K  T  W  K  C  V  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  *  R  S  H  C  R  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  I  S  T  T  A  S  C  R  C  S   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  Y  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  K  G  P  N  M  A  *  K  S  H  S  S  S  S  *  T  Q  Q  G  H  S  *  D  K  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  I  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  C  L  Q  T  K  P  K  H  P  K  E  I  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  I  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  S  K  W  G  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  S  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  *  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  N  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  H  L  S  V  H  F  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  R  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  Y  P  H  M  H  *  P  T  S  C  L  V  L  G  S  R  T  H  P  F  S  Y  P  S  M  S  E  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  K  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  S  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  Y  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  R  G  V  T  A  V  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  S  L  P  R  L  L  A  A  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129578" stop="130054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKVEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLSSYALTDILPCSRIKNSSLFLSLNVRGIYFSINKLENEAQVIGWLTLNMRPPPHFGVPLKLISHKLHTKPFYYTHLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129268" stop="129522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSTILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTIPPNMSSLPTSITLSGVKHRSLREVLTSLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128564" stop="128809"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSSGIPGRSARNTSRNSRTTETDFIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128101" stop="128340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEKVQIWLKNPIHQAHERSRGIRKTKRHHYKFVMPIPHSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130338" stop="130535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSVSPSSPSLITSSVGRGVTAVVSDGLGARPLPLEDVLPRSLPRLLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="129853" PGL_stop="128409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129853" e_stop="129681"/>
            <exon e_start="128936" e_stop="128409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="129853" e_stop="129681" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="129680" i_stop="128937" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="128936" e_stop="128409" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129853" stop="129681"/>
              <exon start="128936" stop="128409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGGCAGGATGTCGGTCAATGCATATGAGGATAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAACCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATGAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACTAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAATCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGTATCTCCTTGGGGTGCTTTGGTTTTGTTTGTAAACAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> T  R  Q  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  N  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  E  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  H  F  D  T  P  L  *  N  G  S  R  G  V  K  R  V  K  I  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  F  G  F  V  C  K  Q  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  D  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  T  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  M  K  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  L  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  S  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  V  S  P  W  G  A  L  V  L  F  V  N  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  A  G  C  R  S  M  H  M  R  I  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  *  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  *  I  G  I  L  I  S  V  L  T  L  N  R  V  L  A  P  F  R  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  N  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  Y  L  L  G  V  L  W  F  C  L  *  T  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129852" stop="129681"/>
                    <exon start="128936" stop="128410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEDKFRALSRYATQLCFSPQERIRRFVKGLRSELRISTLQVAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSMKSVSVVREFLDVFLADLPGMPLDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKSQLQELLNKGFIRPSVSPWGALVLFVNKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="130543" PGL_stop="132414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130543" e_stop="131842"/>
            <exon e_start="132053" e_stop="132414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.179" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="130543" e_stop="131842" e_length="1300"/>
          </exon>
          <intron i_serial="1" don_prob="0.179" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131843" i_stop="132052" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="132053" e_stop="132414" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130543" stop="131842"/>
              <exon start="132053" stop="132414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315285" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131314" stop="131651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACAGCCCCAGTGGCTGGCTCAGAAGCACCCTGTCCCGCCGGTGCTGGTGTTGGTGTTGGCGAAGTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTTTGACGAGACCAACGAACCTAATGCTCTGATACTAAGTTTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAAATAAAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCAGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCAGGCTAGAAACATTAGCTCACCCTGAATTTCCGATGTAGTAAGATTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAATAAGATAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACACAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACACGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAACCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCAGTTCGTGACACCCGATCCCCTAATCTATGTATCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCAGTTCGTCACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATTCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCTGATCCCCTAATTCTACGTGTCG : GTTCGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCCTTCCATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTTATCACGCCTTCTTTTATACCAAGGCCTCATTATTAACCAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACACTTAAGCACATAGCAGGGTTTACAATATTATCAATCCATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTATATCCACCGAAGATTA</gDNA_template>
            <first_frame> L  Q  P  Q  W  L  A  Q  K  H  P  V  P  P  V  L  V  L  V  L  A  K  S  L  L  *  F  *  P  S  A  K  *  S  E  D  G  Q  I  P  I  C  I  T  *  I  P  I  G  P  K  *  *  H  E  R  R  K  K  E  W  N  F  P  K  V  L  *  P  L  K  E  K  *  R  R  P  P  T  V  P  *  D  S  T  R  L  V  L  V  *  R  D  Q  R  T  *  C  S  D  T  K  F  V  T  T  Q  T  G  L  R  L  A  P  T  L  T  L  L  C  E  R  T  N  Q  S  N  L  N  I  S  I  *  Y  Q  Q  K  V  M  R  K  T  *  T  H  *  I  K  T  N  S  L  T  S  K  I  Q  H  L  L  F  P  K  I  W  K  S  S  S  Q  E  H  L  R  S  N  D  *  T  K  S  I  L  K  A  K  N  T  *  E  A  S  P  C  Q  K  F  K  A  S  R  L  E  E  E  D  P  V  R  L  E  T  L  A  H  P  E  F  P  M  *  *  D  W  L  E  L  L  L  S  *  R  R  W  H  V  C  C  T  P  Q  I  N  N  K  I  T  *  K  *  G  S  V  Q  N  T  G  T  E  *  I  S  S  A  N  T  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  T  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  Q  F  V  T  P  D  P  L  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  Q  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  R  V   : G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  L  L  P  S  I  H  Q  A  F  F  L  T  K  A  S  S  I  P  L  F  *  F  I  T  P  S  F  I  P  R  P  H  Y  *  P  R  D  *  D  F  A  R  F  G  I  Q  *  L  H  H  A  Y  I  I  T  I  I  *  L  H  S  C  K  H  T  L  K  H  I  A  G  F  T  I  L  S  I  H  I  I  L  Y  *  E  F  T  T  N  I  V  R  E  T  I  T  Y  I  H  R  R  L </first_frame>
            <second_frame>  Y  S  P  S  G  W  L  R  S  T  L  S  R  R  C  W  C  W  C  W  R  S  R  C  S  S  S  N  H  L  R  N  R  V  K  M  V  R  Y  Q  F  V  S  P  R  Y  Q  L  D  P  S  N  S  T  K  E  E  R  K  N  G  I  F  L  K  S  Y  S  L  S  R  K  S  K  G  V  P  L  P  F  L  K  T  L  L  D  S  F  L  F  D  E  T  N  E  P  N  A  L  I  L  S  L  S  R  P  K  P  G  C  D  W  H  P  H  L  P  S  Y  V  S  E  P  T  N  L  T  L  T  F  Q  Y  N  I  N  R  K  *  C  G  R  L  K  L  I  K  *  R  P  I  H  *  L  L  K  F  N  I  Y  Y  S  P  K  S  G  S  H  H  H  K  N  I  Y  D  Q  M  T  K  L  R  V  F  *  K  L  K  I  H  K  K  L  V  H  A  R  S  S  R  H  Q  D  L  K  K  K  I  Q  S  G  *  K  H  *  L  T  L  N  F  R  C  S  K  I  G  L  N  Y  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  T  I  R  *  H  K  S  R  G  Q  Y  K  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  T  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  P  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  S  S  *  H  P  I  P  *  S  M  Y  R  F  V  T  P  D  P  L  N  L  R  V  S  S  S  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  F  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  L  I  P  *  F  Y  V  S  :  V  R  D  T  R  S  P  N  S  T  C  Q  F  V  T  P  D  P  L  I  S  F  H  Q  F  I  K  P  S  F  L  P  R  H  H  Q  S  H  Y  F  S  L  S  R  L  L  L  Y  Q  G  L  I  I  N  Q  E  I  R  I  L  Q  D  L  G  F  N  N  F  I  M  L  I  *  S  Q  L  Y  N  Y  I  H  A  S  I  H  L  S  T  *  Q  G  L  Q  Y  Y  Q  S  I  S  F  S  I  K  S  L  L  R  I  S  *  E  K  P  *  P  I  S  T  E  D   </second_frame>
            <third_frame>   T  A  P  V  A  G  S  E  A  P  C  P  A  G  A  G  V  G  V  G  E  V  V  A  L  V  L  T  I  C  E  I  E  *  R  W  S  D  T  N  L  Y  H  L  D  T  N  W  T  Q  V  I  A  R  K  K  K  E  R  M  E  F  S  *  S  L  I  A  S  Q  G  K  V  K  A  S  P  Y  R  S  L  R  L  Y  *  T  R  S  C  L  T  R  P  T  N  L  M  L  *  Y  *  V  C  H  D  P  N  R  V  A  T  G  T  H  T  Y  P  P  M  *  A  N  Q  P  I  *  P  *  H  F  N  I  I  S  T  E  S  N  A  E  D  L  N  S  L  N  K  D  Q  F  I  N  F  *  N  S  T  S  I  I  P  Q  N  L  E  V  I  I  T  R  T  S  T  I  K  *  L  N  *  E  Y  S  K  S  *  K  Y  I  R  S  *  S  M  P  E  V  Q  G  I  K  T  *  R  R  R  S  S  Q  A  R  N  I  S  S  P  *  I  S  D  V  V  R  L  A  *  I  T  V  E  L  K  T  M  A  R  L  L  H  S  T  N  K  Q  *  D  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  D  I  I  G  Q  H  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  R  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  N  L  C  I  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  H  T  R  S  P  N  T  T  C  R  F  V  T  P  D  S  L  I  L  R  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  *  S  P  N  S  T  C  R :   F  V  T  P  D  P  L  I  L  R  V  S  S  *  H  P  I  P  *  S  P  S  I  N  S  S  S  L  L  S  Y  Q  G  I  I  N  P  I  I  L  V  Y  H  A  F  F  Y  T  K  A  S  L  L  T  K  R  L  G  F  C  K  I  W  D  S  I  T  S  S  C  L  Y  N  H  N  Y  I  I  T  F  M  Q  A  Y  T  *  A  H  S  R  V  Y  N  I  I  N  P  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  R  N  H  N  L  Y  P  P  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130544" stop="130957"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSPSGWLRSTLSRRCWCWCWRSRCSSSNHLRNRVKMVRYQFVSPRYQLDPSNSTKEERKNGIFLKSYSLSRKSKGVPLPFLKTLLDSFLFDETNEPNALILSLSRPKPGCDWHPHLPSYVSEPTNLTLTFQYNINRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131512" stop="131745"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSRFIIFISLVSVRDTPLPQYSLTLLCRYVTLRSPKSMCQFVTPDPLIYVSVRDTRSPKSTCQFVTPDPLILRVGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0119L20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131831" stop="131842"/>
                    <exon start="132053" stop="132271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYVSVRDTRSPNSTCQFVTPDPLISFHQFIKPSFLPRHHQSHYFSLSRLLLYQGLIINQEIRILQDLGFNNFIMLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 66000 bytes spliced alignments in total
$ 30 spliced alignments have been stored
$ 2200 bytes was the average size of a spliced alignment
$ 22328 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1488 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 136 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:50:31
-->
