<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:39:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705978" ref_strand="+" ref_description="SGN-E705978 [FA28CF09]">
      <seq>gactagcaacaaagaggatgcaactgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1041" stop="5455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1341" g_stop="1449" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="385" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="5155" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="836" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E705978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1341" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="5155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGT</genome_strand>
        <mrna_strand>GACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295291" ref_strand="+" ref_description="SGN-E295291 [cLET-20-N15]">
      <seq>ggaaaacgatcagaaattggagggtcaggtgaatccctctggtgtggagactagcaacaaagaggatgcaactgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1025" stop="5119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1342" g_stop="1449" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="433" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="4819" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="548" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E295291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1342" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="4819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACA</genome_strand>
        <mrna_strand>ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245676" ref_strand="+" ref_description="SGN-E245676 [cLEF-48-E19]">
      <seq>aaaacgatcagaaattggagggtcaagtgaatccctctggtgtggagactagcaacaaagaggatgcaactgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1025" stop="5081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1342" g_stop="1449" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="155" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="431" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="4781" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="508" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E245676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1342" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="4781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACC</genome_strand>
        <mrna_strand>ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301597" ref_strand="+" ref_description="SGN-E301597 [cLEW-23-L12]">
      <seq>ttactaaatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaaaaccccctataatgaggtttctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcaccttcgggacagcaagggcaaccttcaagtcttcccccagtgtccttatctggaacgaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1063" stop="5121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1361" g_stop="1449" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="363" r_length="276" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="4821" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="480" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E301597" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1361" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="4821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATT</genome_strand>
        <mrna_strand>TTACT-A-AATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAAACCCCCTATAATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTTCGGGACAGCAAGGGCAACCTTCAAGTCTTCCCCCAGTGTCCTTATCTGGAACGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285046" ref_strand="+" ref_description="SGN-E285046 [cLER-19-P13]">
      <seq>tgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccactttaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaaccttattctaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1065" stop="5264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1365" g_stop="1449" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="361" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="4964" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="621" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E285046" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1365" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="4964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTT</genome_strand>
        <mrna_strand>TGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTTAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTTATTCTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274199" ref_strand="+" ref_description="SGN-E274199 [cLEN-8-D22]">
      <seq>tcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacactttctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1071" stop="2158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1371" g_stop="1449" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1858" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="352" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E274199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1371" e_stop="1449"/>
          <exon e_start="1586" e_stop="1858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAAT</genome_strand>
        <mrna_strand>TCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTTCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369042" ref_strand="+" ref_description="SGN-E369042 [TUS-25-L1]">
      <seq>aaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1076" stop="5354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1376" g_stop="1449" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="350" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="5054" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="700" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E369042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1376" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="5054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTT</genome_strand>
        <mrna_strand>AAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248974" ref_strand="+" ref_description="SGN-E248974 [cLEF-49-N22]">
      <seq>aaagaaaggagattgaggataaattacaagttgtgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1076" stop="5037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1376" g_stop="1449" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="350" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="4737" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="383" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E248974" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1376" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="4737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACT</genome_strand>
        <mrna_strand>AAAGAAAGGAGATTGAGGATAAATTACAAGTTGTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267227" ref_strand="+" ref_description="SGN-E267227 [cLEI-4-D1]">
      <seq>catggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1123" stop="5202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1423" g_stop="1449" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1586" g_stop="1861" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="303" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4705" g_stop="4902" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="501" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E267227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1423" e_stop="1449"/>
          <exon e_start="1586" e_stop="1861"/>
          <exon e_start="4705" e_stop="4902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAG</genome_strand>
        <mrna_strand>CATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553440" ref_strand="-" ref_description="SGN-E553440 [cTSC-1-C1]">
      <seq>ttttaatttgttcctattcggcaaaattaggtattacttagcatgatcatttttttgtttacaagtattggcttttggcagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcaccccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagttcttaaaagatgttagaactgaatatcctatgtacatatattatgccattttgcttttaagtcgttaagttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1206" stop="5529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1507" g_stop="1861" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4705" g_stop="5228" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="882" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E553440" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553440" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1507" e_stop="1861"/>
          <exon e_start="4705" e_stop="5228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTGTTCTTA-TCTGTCAAATTATGTATTACTTAGCATGATCA-TTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCA-CCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGT</genome_strand>
        <mrna_strand>TTTTAATTTGTTCCTATTCGGCAAAATTAGGTATTACTTAGCATGATCATTTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379678" ref_strand="+" ref_description="SGN-E379678 [TUS-3-O9](-)">
      <seq>aacagatttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttaggaataaaagatgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1283" stop="5454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1581" g_stop="1861" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4705" g_stop="5171" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="746" r_length="466" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E379678" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1581" e_stop="1861"/>
          <exon e_start="4705" e_stop="5171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAG</genome_strand>
        <mrna_strand>AACAGA-TTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAG-GAATAAAAGATGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369041" ref_strand="+" ref_description="SGN-E369041 [TUS-25-L1](-)">
      <seq>tggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattttaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagttcttaaaagatgttagaactgaatatcctatgtacatatattatgccattttgcttttaagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1419" stop="5517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1719" g_stop="1861" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4705" g_stop="5215" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="654" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="675"/>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E369041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1719" e_stop="1861"/>
          <exon e_start="4705" e_stop="5215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAA</genome_strand>
        <mrna_strand>TGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTTTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350169" ref_strand="+" ref_description="SGN-E350169 [cTOS-4-O19]">
      <seq>tgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagttcttaaaagatgttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1539" stop="5473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1839" g_stop="1861" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4705" g_stop="5177" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="496" r_length="473" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E350169" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1839" e_stop="1861"/>
          <exon e_start="4705" e_stop="5177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGA</genome_strand>
        <mrna_strand>TGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350908" ref_strand="+" ref_description="SGN-E350908 [cTOS-7-H13]">
      <seq>tgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagttcttaaaagatgttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1539" stop="5473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1839" g_stop="1861" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4705" g_stop="5177" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="496" r_length="473" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E350908" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1839" e_stop="1861"/>
          <exon e_start="4705" e_stop="5177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGA</genome_strand>
        <mrna_strand>TGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351777" ref_strand="+" ref_description="SGN-E351777 [cTOS-8-L4]">
      <seq>tgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactgggctaatctatgaagctgtaaatttattctgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1539" stop="5303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1839" g_stop="1861" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4705" g_stop="5003" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="324" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E351777" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1839" e_stop="1861"/>
          <exon e_start="4705" e_stop="5003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACT-GGCTAATCTATGAAGCTGTAAA-TTATTCTGTAG</genome_strand>
        <mrna_strand>TGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGGCTAATCTATGAAGCTGTAAATTTATTCTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376545" ref_strand="+" ref_description="SGN-E376545 [TUS-17-J23](-)">
      <seq>tggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatttggaaagaacattgttgcctcctctccttttcctgtagcatcaggcggcacttcagcattttgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttttgttctttcaacctcattttaagtttcaactgggtaatttatgaagctgtaaattattttgtagttccaaattggtcattcgctgtaacggtaacagtgacgatgcagtgtctttaagtttggtgccttttagttggaagtatagtatttccgttaatctgggtgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagtttttaaaaaatgttagaactgaatatcctatgtacatatattatgccattttgcttttaagtcgtttagttgtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4404" stop="5532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4703" g_stop="5231" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="563"/>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E376545" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4703" e_stop="5231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGTATT</genome_strand>
        <mrna_strand>TGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATTTGGAAAGAACATTGTTGCCTCCTCTCCTTTTCCTGTAGCATCAGGCGGCACTTCAGCATTTTGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTTTGTTCTTTCAACCTCATTTTAAGTTTCAACTGGGTAATTTATGAAGCTGTAAATTATTTTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAACAGTGACGATGCAGTGTCTTTAAGTTTGGTGCCTTTTAGTTGGAAGTATAGTATTTCCGTTAATCTGGGTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTTTTAAAAAATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTTAGTTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578289" ref_strand="+" ref_description="SGN-E578289 [LE12BH06]">
      <seq>tttgtttgatttcacataatttaaaaaccattttacaatttttctatttttttcatgcaagacaaaaaaaaaaattgtcctagtgttttgttgtacactgatttactgctaattataattcataaaaggattgcttgctcaattgctagttaaagttgaatccaaatgatccataaatttacaacagtaggaaatacttaaactaataactgttgttctaagcttcttcatacttcatttctcatgaaagaagaaaattgatgttgcagcagcaacctacctccccccctctccaacaagcacagatgaactctagtacttactagtaaaaagatgaaacctttgtgtccgtggcgtcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="+" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31811" stop="32771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32111" g_stop="32471" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="+" ref_id="SGN-E578289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32111" e_stop="32471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGATTTCACATAATTTAAAAACCATTTTACAATTTTTCTATTTTTTTCATGCAAGACAAAAAAAAAAATTGTCCTAGTGTTTTGTTGTACACTGATTTACTGCTAATTATAATTCATAAAAGGATTGCTTGCTCAATTGCTAGTTAAAGTTGAATCCAAATGATCCATAAATTTACAACAGTAGGAAATACTTAAACTAATAACTGTTGTTCTAAGCTTCTTCATACTTCATTTCTCATGAAAGAAGAAAATTGATGTTGCAGCAGCAACCTACCTCCCCCCCTCTCCAACAAGCACAGATGAACTCTAGTACTTACTAGTAAAAAGATGAAACCTTTGTGTCCGTGGCGTCGCC</genome_strand>
        <mrna_strand>TTTGTTTGATTTCACATAATTTAAAAACCATTTTACAATTTTTCTATTTTTTTCATGCAAGACAAAAAAAAAAATTGTCCTAGTGTTTTGTTGTACACTGATTTACTGCTAATTATAATTCATAAAAGGATTGCTTGCTCAATTGCTAGTTAAAGTTGAATCCAAATGATCCATAAATTTACAACAGTAGGAAATACTTAAACTAATAACTGTTGTTCTAAGCTTCTTCATACTTCATTTCTCATGAAAGAAGAAAATTGATGTTGCAGCAGCAACCTACCTCCCCCCCTCTCCAACAAGCACAGATGAACTCTAGTACTTACTAGTAAAAAGATGAAACCTTTGTGTCCGTGGCGTCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715144" ref_strand="+" ref_description="SGN-E715144 [FB13BH07]">
      <seq>atcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttatattgccttttcttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgcctttttcctggacaacacaatgcacaaaaaggatggccagacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattctactccctccctttcaatctgaacaagtatttcccatctgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatctgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaattttcttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaaagcatccttttatgaattataattaacagtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33645" stop="31911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33430" g_stop="33416" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33330" g_stop="33239" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="107" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33238" i_stop="33131" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33130" g_stop="33053" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="185" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109">
            <donor d_prob="0.272" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32943" g_stop="32783" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="346" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32782" i_stop="32694" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32693" g_stop="32211" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="829" r_length="483" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E715144" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33430" e_stop="33416"/>
          <exon e_start="33330" e_stop="33239"/>
          <exon e_start="33130" e_stop="33053"/>
          <exon e_start="32943" e_stop="32783"/>
          <exon e_start="32693" e_stop="32211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</genome_strand>
        <mrna_strand>ATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAAGCATCCTTTTATGAATTATAATTAACAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390250" ref_strand="+" ref_description="SGN-E390250 [TUS-40-E7](-)">
      <seq>gaattttactccctccccctcaatcttgaacaagtatttcccatttctgtgatttggggacgccacggacacaaaggtttcatttttttactagtaagtactagagttcatctgtggttgttggagagggggggaggtaggttggtggtgcaacatcaatttttttttttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattccactttaactagcaattgagcaagcaatccttttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32825" stop="31923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32525" g_stop="32230" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="313"/>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E390250" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32525" e_stop="32230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTACTCCCTCCCTTTCAATC-TGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGA</genome_strand>
        <mrna_strand>GAATTTTACTCCCTCCCCCTCAATCTTGAACAAGTATTTCCCATTTCTGTGATTTGGGGACGCCACGGACACAAAGGTTTCATTTTTTTACTAGTAAGTACTAGAGTTCATCTGTGGTTGTTGGAGAGGGGGGGAGGTAGGTTGGTGGTGCAACATCAATTTTTTTTTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCCACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390439" ref_strand="+" ref_description="SGN-E390439 [TUS-39-H12](-)">
      <seq>gaattttactcccttcctttcaatttgaacaagtattttccatttgtgtgatttggcgacgccacggacgcaaagggttcatctttttactagtaagtactagagttcatctgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaatttttttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttgggttcaactttaactagcaattgagcaagcaatccttttatggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32825" stop="31923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32525" g_stop="32230" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="312"/>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E390439" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32525" e_stop="32230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGA</genome_strand>
        <mrna_strand>GAATTTTACTCCCTTCCTTTCAATTTGAACAAGTATTTTCCATTTGTGTGATTTGGCGACGCCACGGACGCAAAGGGTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTTTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGGTTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390268" ref_strand="+" ref_description="SGN-E390268 [TUS-40-I11](-)">
      <seq>gcttcaattcctgcacctattgttggtgccttatattgccttttcttcgcttaagtaggcgctggaggcttaggttttcttcagttttgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtaattcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgccttttttctggacaacacaatgcacaaaaaggatggcctgacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattttactccctccctttcaatttgaacaagtatttcccatttgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatttgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaatttttttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaagcaatccttttagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33410" stop="31923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33110" g_stop="33053" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109">
            <donor d_prob="0.272" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32943" g_stop="32783" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="219" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32782" i_stop="32694" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32693" g_stop="32234" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="679" r_length="460" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="698"/>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E390268" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33110" e_stop="33053"/>
          <exon e_start="32943" e_stop="32783"/>
          <exon e_start="32693" e_stop="32234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</genome_strand>
        <mrna_strand>GCTTCAATTCCTGCACCTATTGTTGGTGCCTTATATTGCCTTTTCTTCGCTTAAGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTTTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTAATTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTTCTGGACAACACAATGCACAAAAAGGATGGCCTGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTTTACTCCCTCCCTTTCAATTTGAACAAGTATTTCCCATTTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATTTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTTTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390478" ref_strand="+" ref_description="SGN-E390478 [TUS-40-G11](-)">
      <seq>cacctattgttggtgctttatattgccttttttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaattttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgccttttttctggacaacacaatgcacaaaaaggatggccagacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattttactccctccctttcaatttgaacaagtatttcccatttgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatttgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaatttttttttttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaagcaatccttttagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33397" stop="31923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33097" g_stop="33053" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32943" g_stop="32783" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="205" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32782" i_stop="32694" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32693" g_stop="32234" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="665" r_length="460" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E390478" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33097" e_stop="33053"/>
          <exon e_start="32943" e_stop="32783"/>
          <exon e_start="32693" e_stop="32234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</genome_strand>
        <mrna_strand>CACCTATTGTTGGTGCTTTATATTGCCTTTT-TTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATTTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTTCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTTTACTCCCTCCCTTTCAATTTGAACAAGTATTTCCCATTTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATTTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTTTTTTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558412" ref_strand="+" ref_description="SGN-E558412 [17748]">
      <seq>agtggtgctcatggattagtatccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctcttggtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcaggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtcttttagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttgtattgccttttcttcgcttatgtaggcgctggaggcttaggctttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtaatactgctgttgctggttatggacctgttcaccacacatgcaaagatggttcaacgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35564" stop="32472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35258" g_stop="35162" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="110" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34792" g_stop="34706" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="196" r_length="86" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34705" i_stop="33475" i_length="1231">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33474" g_stop="33416" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="255" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33330" g_stop="33239" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="347" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33238" i_stop="33131" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33130" g_stop="33053" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="425" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32943" g_stop="32783" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="589" r_length="164" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32782" i_stop="32694" i_length="89">
            <donor d_prob="0.993" d_score="0.87"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32693" g_stop="32684" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="599" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E558412" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35258" e_stop="35162"/>
          <exon e_start="34792" e_stop="34706"/>
          <exon e_start="33474" e_stop="33416"/>
          <exon e_start="33330" e_stop="33239"/>
          <exon e_start="33130" e_stop="33053"/>
          <exon e_start="32943" e_stop="32783"/>
          <exon e_start="32693" e_stop="32684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTC-TAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGT-ATACTGCTGTTGCTGGTTATGGACCTGTTCA-CACACATGC-AAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACA</genome_strand>
        <mrna_strand>GATTAGTA-TCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTTGGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTTTTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTGTATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGCTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTAATACTGCTGTTGCTGGTTATGGACCTGTTCACCACACATGCAAAGATGG.........................................................................................TTCAACGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699271" ref_strand="+" ref_description="SGN-E699271 [FA09BE12]">
      <seq>attccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctctagtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttatattgccttttcttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35551" stop="32505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35251" g_stop="35162" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34792" g_stop="34706" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="177" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34705" i_stop="33475" i_length="1231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33474" g_stop="33416" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33330" g_stop="33239" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="328" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33238" i_stop="33131" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33130" g_stop="33053" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109">
            <donor d_prob="0.272" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32943" g_stop="32805" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="545" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E699271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35251" e_stop="35162"/>
          <exon e_start="34792" e_stop="34706"/>
          <exon e_start="33474" e_stop="33416"/>
          <exon e_start="33330" e_stop="33239"/>
          <exon e_start="33130" e_stop="33053"/>
          <exon e_start="32943" e_stop="32805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACC</genome_strand>
        <mrna_strand>ATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312826" ref_strand="+" ref_description="SGN-E312826 [cTOA-8-K17]">
      <seq>agagctagtccttttagtcattttctctcagtatctggcacacctgatacgtccagggaagaatatatttgatcgttttgctgttcttttcacggtgatcattgtatggatttatgcacacctactcactgtgggcggggcttacaatggaaagccaccgaagacacaagcaagctgcagaactgaccgtgctggactcattagtggtgctcaatggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctctagtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36826" stop="32806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36517" g_stop="36333" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="216" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36332" i_stop="35259" i_length="1074">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35258" g_stop="35162" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="313" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34792" g_stop="34706" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34705" i_stop="33475" i_length="1231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33474" g_stop="33416" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="459" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33330" g_stop="33239" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="551" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33238" i_stop="33131" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33130" g_stop="33106" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="576" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E312826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36517" e_stop="36333"/>
          <exon e_start="35258" e_stop="35162"/>
          <exon e_start="34792" e_stop="34706"/>
          <exon e_start="33474" e_stop="33416"/>
          <exon e_start="33330" e_stop="33239"/>
          <exon e_start="33130" e_stop="33106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATGGCACGTGCTCCGCTCCTTCATTTTTCACTTTTCTAATGTACTGGCATGGGTTAAATATTTGTGTGGATATGCAGATCTTTTTGGTATTTTAACATTTATGCGGTCCCAAAGATACGGAACTCCTTGGTAAAAATTACAACTTTGTAAGTGTAAGAGTGGGTCTTGCTTCTGTGGCTTACATACATTCAAAAATGATTCTACAGCATGGTATAAAAGTTGTGTTCTAGGGAAGTGGCACATGTTAGCACAGCATAAAAAGGAAAATAAGATGCTTATGTTGGGACATAAGGATTAGTTTCTGATAACCTATATTGCATTACAATCTTCAACATAATAACACTTTGTTTTGACATGTGGCATAGACCATTGTCTTCCACTCTAGAGTCCTAGAATTTAAGAAATTTAGAATGTTAACATGTCATGCTCTTATTGCCTCTCTAAAGTGACTATCCCAGTGGCTCCTCTGAGCAGTAGCTTCTGGGAAAGACAAGAAATTGGTGCGTACTTGTCCATTAAACTAACCTTGCGTAATTTGATTGAAACGATAAACAAGAAGAAAATAAGAGAGATGCATATAGGTATTTTAGCTATATAATTTTGCATGGAATGATGCTTTGTGCTTTTCGTTTCATCGCCAGTTTAGTCACAACTGATCAACTGGCTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTC</genome_strand>
        <mrna_strand>TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428536" ref_strand="+" ref_description="SGN-E428536 [STM-50-D5]">
      <seq>ctggtctgttattcccacactgagcataactggcagatatggtcatggtgctacagattaggaaaagtaagcacaagtgggtgtcccaaagtaacctatctgagtcttatattatcgactgcatagagtgtttgttggtcaattttaaaaaatggagcataacagaatttagatttcgttatccatttcatcttctcttactgttggtcttatggttgtgacatgggatgcatattgtttgaaaaacattccattatgttcattactcatatcaagttgtttttgttggttcagtattgttcttaatttgttactttagtccattaggaaaatattcctctagaattacgaggcaacttattgtaattttaatagttttctcttttcttttactggcttgaacctgcaggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctcttgtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtggtggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtcttttagcactgacacgtgttggcagtagaaaagtgntcagatatctgctgcgttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35966" stop="32957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35666" g_stop="35162" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34792" g_stop="34706" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="593" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34705" i_stop="33475" i_length="1231">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33474" g_stop="33416" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="652" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33330" g_stop="33257" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="725" r_length="73" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E428536" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35666" e_stop="35162"/>
          <exon e_start="34792" e_stop="34706"/>
          <exon e_start="33474" e_stop="33416"/>
          <exon e_start="33330" e_stop="33257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAG-CCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGA</genome_strand>
        <mrna_strand>CTGGTCTGTTATTCCCACACTGAGCATAACTGGCAGATATGGTCATGGTGCTACAGATTAGGAAAAGTAAGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTAAAAAATGGAGCATAACAGAATTTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTATGTTCATTACTCATATCAAGTTGTTTTTGTTGGTTCAGTATTGTTCTTAATTTGTTACTTTAGTCCATTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAGTTTTCTCTTTTCTTTTACTGGCTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTTGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGGTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTTTTAGCACTGACACGTGTTGGCAGTAGAAAAG-TGNTCAGATATCTGCTGCGTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480289" ref_strand="+" ref_description="SGN-E480289 [cSTD-13-M12]">
      <seq>cgaggctggtctgttattcccacacctgagcataactggcagatattggtcatggtgctacagattaggaaaagtaagcacaagtgggtgtcccaaagtaacctatctgagtcttatattatcgactgcatagagtgtttgttggtcaattttaaaaaatggagcataacagaatttagatttcgttatccatttcatcttctcttactgttggtcttatggttgtgacatgggatgcatattgtttgaaaaacattccattatgttcattactcatatcaagttgtttttgttggttcagtattgttcttaatttgttactttagtccattaggaaaatattcctctagaattacgaggcaacttattgtaattttaatagttttctcttttcttttactggcttgaacctgcaggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctcttgtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0122G20-TOVO0/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0122G20.1" temp_strand="-" temp_description="C06HBa0122G20.1  AC226011.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0122G20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35967" stop="34427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35671" g_stop="35162" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34792" g_stop="34727" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="579" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0122G20.1" gen_strand="-" ref_id="SGN-E480289" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0122G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35671" e_stop="35162"/>
          <exon e_start="34792" e_stop="34727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGCTGGTCTGTTATTCCCACA-CTGAGCATAACTGGCACATA-TGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAG-CCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTT</genome_strand>
        <mrna_strand>CGAGGCTGGTCTGTTATTCCCACACCTGAGCATAACTGGCAGATATTGGTCATGGTGCTACAGATTAGGAAAAGTAAGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTAAAAAATGGAGCATAACAGAATTTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTATGTTCATTACTCATATCAAGTTGTTTTTGTTGGTTCAGTATTGTTCTTAATTTGTTACTTTAGTCCATTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAGTTTTCTCTTTTCTTTTACTGGCTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTTGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1341" PGL_stop="5231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1341" e_stop="1449"/>
            <exon e_start="1586" e_stop="1861"/>
            <exon e_start="4705" e_stop="5215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1341" e_stop="1449" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1450" i_stop="1585" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1586" e_stop="1861" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.992">
            <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="4705" e_stop="5215" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1341" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="5155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1342" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="4819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1342" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="4781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1361" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="4821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1365" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="4964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1371" stop="1449"/>
              <exon start="1586" stop="1858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1376" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="5054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1376" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="4737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1423" stop="1449"/>
              <exon start="1586" stop="1861"/>
              <exon start="4705" stop="4902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1719" stop="1861"/>
              <exon start="4705" stop="5215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="1861"/>
              <exon start="4705" stop="5177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="1861"/>
              <exon start="4705" stop="5177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="1861"/>
              <exon start="4705" stop="5003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG : ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG : GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAA</gDNA_template>
            <first_frame> D  *  Q  Q  R  G  C  N  *  *  S  E  K  K  G  D  *  G  *  I  T  S  S  E  Y  E  K  A  W  F  G  T  I  T  K  T   : D  F  E  C  R  R  G  A  E  E  T  K  H  A  R  N  G  S  A  A  I  T  P  T  S  S  G  Y  N  K  R  H  W  I  Y  N  *  T  K  H  T  *  N  G  L  G  W  *  P  H  R  *  G  G  W  R  W  R  *  *  C  I  Q  P  E  H  T  S  S  E  F  A  S  F  E  Q  Y  I  T  I  F  R  F  S  T  E  E  D  P  L  *  C   : G  S  S  R  F  T  I  C  W  S  Y  C  *  S  F  T  V  C  T  S  G  T  A  R  A  T  F  K  S  P  P  S  V  L  I  W  N  E  H  C  C  L  L  S  F  S  C  S  I  R  R  H  F  S  I  S  R  S  V  C  K  P  M  K  M  G  V  V  L  V  V  T  P  P  V  S  W  L  S  V  L  S  T  S  F  *  V  S  T  G  *  S  M  K  L  *  I  I  L  *  F  Q  I  G  H  S  L  *  R  *  Q  *  R  C  S  V  F  K  S  G  A  F  *  L  E  V  *  Y  F  R  *  S  G  W  V  C  V  H  P  I  L  V  K  F  P  M  V  M  F  L  V  L  K  R  C  *  N  *  I  S  Y  V  H  I  L  C  H  F  A  F   </first_frame>
            <second_frame>  T  S  N  K  E  D  A  T  D  N  Q  K  R  K  E  I  E  D  K  L  Q  V  L  N  M  K  K  H  G  L  V  Q  L  L  K  Q  :  I  L  N  A  E  E  E  L  K  R  R  S  M  Q  G  M  A  V  R  P  S  P  P  L  Q  V  D  T  T  N  D  T  G  S  I  T  K  L  N  T  P  R  M  G  L  D  G  N  P  I  G  E  V  D  G  D  G  G  D  D  A  S  N  Q  N  T  L  P  R  N  L  L  R  L  S  S  T  S  P  S  S  D  S  Q  L  R  K  T  P  Y  N  V  :  V  P  L  A  S  R  S  V  G  V  T  V  S  P  S  R  F  A  P  P  G  Q  Q  G  Q  P  S  S  L  P  P  V  S  L  S  G  T  N  I  V  A  S  S  P  S  P  V  A  S  G  G  T  S  A  F  R  D  R  F  A  S  P  *  K  W  E  L  C  *  L  L  L  L  L  S  A  G  F  L  F  S  Q  P  H  S  K  F  Q  L  A  N  L  *  S  C  K  L  F  C  S  S  K  L  V  I  R  C  N  G  S  S  D  D  A  V  S  L  S  L  V  P  S  S  W  K  Y  S  I  S  V  N  L  A  G  C  V  S  I  R  Y  L  *  S  F  P  W  S  C  F  *  F  L  K  D  V  R  T  E  Y  P  M  Y  I  Y  Y  A  I  L  L  L  </second_frame>
            <third_frame>   L  A  T  K  R  M  Q  L  I  I  R  K  E  R  R  L  R  I  N  Y  K  F  *  I  *  K  S  M  V  W  Y  N  Y  *  N  R :   F  *  M  Q  K  R  S  *  R  D  E  A  C  K  E  W  Q  C  G  H  H  P  H  F  K  W  I  Q  Q  T  T  L  D  L  *  L  N  *  T  H  L  E  W  A  W  M  V  T  P  S  V  R  W  M  E  M  E  V  M  M  H  P  T  R  T  H  F  L  G  I  C  F  V  *  A  V  H  H  H  L  Q  I  L  N  *  G  R  P  P  I  M  W :   F  L  S  L  H  D  L  L  E  L  L  L  V  L  H  G  L  H  L  R  D  S  K  G  N  L  Q  V  S  P  Q  C  P  Y  L  E  R  T  L  L  P  P  L  L  L  L  *  H  Q  A  A  L  Q  H  F  E  I  G  L  Q  A  H  E  N  G  S  C  A  S  C  Y  S  S  C  Q  L  A  F  C  S  L  N  L  I  L  S  F  N  W  L  I  Y  E  A  V  N  Y  S  V  V  P  N  W  S  F  A  V  T  V  A  V  T  M  Q  C  L  *  V  W  C  L  L  V  G  S  I  V  F  P  L  I  W  L  G  V  C  P  S  D  T  C  E  V  S  H  G  H  V  F  S  S  *  K  M  L  E  L  N  I  L  C  T  Y  I  M  P  F  C  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0122G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1342" stop="1449"/>
                    <exon start="1586" stop="1861"/>
                    <exon start="4705" stop="4893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSNKEDATDNQKRKEIEDKLQVLNMKKHGLVQLLKQILNAEEELKRRSMQGMAVRPSPPLQVDTTNDTGSITKLNTPRMGLDGNPIGEVDGDGGDDASNQNTLPRNLLRLSSTSPSSDSQLRKTPYNVVPLASRSVGVTVSPSRFAPPGQQGQPSSLPPVSLSGTNIVASSPSPVASGGTSAFRDRFASP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1507" e_stop="1861"/>
            <exon e_start="4705" e_stop="5228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.992" e_score="0.966"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="1507" e_stop="1861" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.992">
            <gDNA_intron_boundary i_start="1862" i_stop="4704" i_length="2843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4705" e_stop="5228" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1507" stop="1861"/>
              <exon start="4705" stop="5228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1581" stop="1861"/>
              <exon start="4705" stop="5171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1719" stop="1861"/>
              <exon start="4705" stop="5215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="1861"/>
              <exon start="4705" stop="5177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="1861"/>
              <exon start="4705" stop="5177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="1861"/>
              <exon start="4705" stop="5003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG : GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGT</gDNA_template>
            <first_frame> F  L  F  V  L  I  C  Q  I  M  Y  Y  L  A  *  S  F  F  V  Y  K  Y  W  L  L  A  D  F  E  C  R  R  G  A  E  E  T  K  H  A  R  N  G  S  A  A  I  T  P  T  S  S  G  Y  N  K  R  H  W  I  Y  N  *  T  K  H  T  *  N  G  L  G  W  *  P  H  R  *  G  G  W  R  W  R  *  *  C  I  Q  P  E  H  T  S  S  E  F  A  S  F  E  Q  Y  I  T  I  F  R  F  S  T  E  E  D  P  L  *  C   : G  S  S  R  F  T  I  C  W  S  Y  C  *  S  F  T  V  C  T  S  G  T  A  R  A  T  F  K  S  P  P  S  V  L  I  W  N  E  H  C  C  L  L  S  F  S  C  S  I  R  R  H  F  S  I  S  R  S  V  C  K  P  M  K  M  G  V  V  L  V  V  T  P  P  V  S  W  L  S  V  L  S  T  S  F  *  V  S  T  G  *  S  M  K  L  *  I  I  L  *  F  Q  I  G  H  S  L  *  R  *  Q  *  R  C  S  V  F  K  S  G  A  F  *  L  E  V  *  Y  F  R  *  S  G  W  V  C  V  H  P  I  L  V  K  F  P  M  V  M  F  L  V  L  K  R  C  *  N  *  I  S  Y  V  H  I  L  C  H  F  A  F  K  S  L  S  C </first_frame>
            <second_frame>  F  Y  L  F  L  S  V  K  L  C  I  T  *  H  D  H  F  L  F  T  S  I  G  F  W  Q  I  L  N  A  E  E  E  L  K  R  R  S  M  Q  G  M  A  V  R  P  S  P  P  L  Q  V  D  T  T  N  D  T  G  S  I  T  K  L  N  T  P  R  M  G  L  D  G  N  P  I  G  E  V  D  G  D  G  G  D  D  A  S  N  Q  N  T  L  P  R  N  L  L  R  L  S  S  T  S  P  S  S  D  S  Q  L  R  K  T  P  Y  N  V  :  V  P  L  A  S  R  S  V  G  V  T  V  S  P  S  R  F  A  P  P  G  Q  Q  G  Q  P  S  S  L  P  P  V  S  L  S  G  T  N  I  V  A  S  S  P  S  P  V  A  S  G  G  T  S  A  F  R  D  R  F  A  S  P  *  K  W  E  L  C  *  L  L  L  L  L  S  A  G  F  L  F  S  Q  P  H  S  K  F  Q  L  A  N  L  *  S  C  K  L  F  C  S  S  K  L  V  I  R  C  N  G  S  S  D  D  A  V  S  L  S  L  V  P  S  S  W  K  Y  S  I  S  V  N  L  A  G  C  V  S  I  R  Y  L  *  S  F  P  W  S  C  F  *  F  L  K  D  V  R  T  E  Y  P  M  Y  I  Y  Y  A  I  L  L  L  S  R  *  V   </second_frame>
            <third_frame>   F  I  C  S  Y  L  S  N  Y  V  L  L  S  M  I  I  F  C  L  Q  V  L  A  F  G  R  F  *  M  Q  K  R  S  *  R  D  E  A  C  K  E  W  Q  C  G  H  H  P  H  F  K  W  I  Q  Q  T  T  L  D  L  *  L  N  *  T  H  L  E  W  A  W  M  V  T  P  S  V  R  W  M  E  M  E  V  M  M  H  P  T  R  T  H  F  L  G  I  C  F  V  *  A  V  H  H  H  L  Q  I  L  N  *  G  R  P  P  I  M  W :   F  L  S  L  H  D  L  L  E  L  L  L  V  L  H  G  L  H  L  R  D  S  K  G  N  L  Q  V  S  P  Q  C  P  Y  L  E  R  T  L  L  P  P  L  L  L  L  *  H  Q  A  A  L  Q  H  F  E  I  G  L  Q  A  H  E  N  G  S  C  A  S  C  Y  S  S  C  Q  L  A  F  C  S  L  N  L  I  L  S  F  N  W  L  I  Y  E  A  V  N  Y  S  V  V  P  N  W  S  F  A  V  T  V  A  V  T  M  Q  C  L  *  V  W  C  L  L  V  G  S  I  V  F  P  L  I  W  L  G  V  C  P  S  D  T  C  E  V  S  H  G  H  V  F  S  S  *  K  M  L  E  L  N  I  L  C  T  Y  I  M  P  F  C  F  *  V  V  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0122G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1547" stop="1861"/>
                    <exon start="4705" stop="4893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDHFLFTSIGFWQILNAEEELKRRSMQGMAVRPSPPLQVDTTNDTGSITKLNTPRMGLDGNPIGEVDGDGGDDASNQNTLPRNLLRLSSTSPSSDSQLRKTPYNVVPLASRSVGVTVSPSRFAPPGQQGQPSSLPPVSLSGTNIVASSPSPVASGGTSAFRDRFASP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4703" e_stop="5231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="4703" e_stop="5231" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4703" stop="5231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGTATT</gDNA_template>
            <first_frame> R  F  L  S  L  H  D  L  L  E  L  L  L  V  L  H  G  L  H  L  R  D  S  K  G  N  L  Q  V  S  P  Q  C  P  Y  L  E  R  T  L  L  P  P  L  L  L  L  *  H  Q  A  A  L  Q  H  F  E  I  G  L  Q  A  H  E  N  G  S  C  A  S  C  Y  S  S  C  Q  L  A  F  C  S  L  N  L  I  L  S  F  N  W  L  I  Y  E  A  V  N  Y  S  V  V  P  N  W  S  F  A  V  T  V  A  V  T  M  Q  C  L  *  V  W  C  L  L  V  G  S  I  V  F  P  L  I  W  L  G  V  C  P  S  D  T  C  E  V  S  H  G  H  V  F  S  S  *  K  M  L  E  L  N  I  L  C  T  Y  I  M  P  F  C  F  *  V  V  K  L  Y  </first_frame>
            <second_frame>  G  S  S  R  F  T  I  C  W  S  Y  C  *  S  F  T  V  C  T  S  G  T  A  R  A  T  F  K  S  P  P  S  V  L  I  W  N  E  H  C  C  L  L  S  F  S  C  S  I  R  R  H  F  S  I  S  R  S  V  C  K  P  M  K  M  G  V  V  L  V  V  T  P  P  V  S  W  L  S  V  L  S  T  S  F  *  V  S  T  G  *  S  M  K  L  *  I  I  L  *  F  Q  I  G  H  S  L  *  R  *  Q  *  R  C  S  V  F  K  S  G  A  F  *  L  E  V  *  Y  F  R  *  S  G  W  V  C  V  H  P  I  L  V  K  F  P  M  V  M  F  L  V  L  K  R  C  *  N  *  I  S  Y  V  H  I  L  C  H  F  A  F  K  S  L  S  C  I </second_frame>
            <third_frame>   V  P  L  A  S  R  S  V  G  V  T  V  S  P  S  R  F  A  P  P  G  Q  Q  G  Q  P  S  S  L  P  P  V  S  L  S  G  T  N  I  V  A  S  S  P  S  P  V  A  S  G  G  T  S  A  F  R  D  R  F  A  S  P  *  K  W  E  L  C  *  L  L  L  L  L  S  A  G  F  L  F  S  Q  P  H  S  K  F  Q  L  A  N  L  *  S  C  K  L  F  C  S  S  K  L  V  I  R  C  N  G  S  S  D  D  A  V  S  L  S  L  V  P  S  S  W  K  Y  S  I  S  V  N  L  A  G  C  V  S  I  R  Y  L  *  S  F  P  W  S  C  F  *  F  L  K  D  V  R  T  E  Y  P  M  Y  I  Y  Y  A  I  L  L  L  S  R  *  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0122G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4743" stop="4961"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTVCTSGTARATFKSPPSVLIWNEHCCLLSFSCSIRRHFSISRSVCKPMKMGVVLVVTPPVSWLSVLSTSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0122G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4847" stop="5056"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQAALQHFEIGLQAHENGSCASCYSSCQLAFCSLNLILSFNWLIYEAVNYSVVPNWSFAVTVAVTMQCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="32111" PGL_stop="32471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32111" e_stop="32471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32111" e_stop="32471" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32111" stop="32471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTTGATTTCACATAATTTAAAAACCATTTTACAATTTTTCTATTTTTTTCATGCAAGACAAAAAAAAAAATTGTCCTAGTGTTTTGTTGTACACTGATTTACTGCTAATTATAATTCATAAAAGGATTGCTTGCTCAATTGCTAGTTAAAGTTGAATCCAAATGATCCATAAATTTACAACAGTAGGAAATACTTAAACTAATAACTGTTGTTCTAAGCTTCTTCATACTTCATTTCTCATGAAAGAAGAAAATTGATGTTGCAGCAGCAACCTACCTCCCCCCCTCTCCAACAAGCACAGATGAACTCTAGTACTTACTAGTAAAAAGATGAAACCTTTGTGTCCGTGGCGTCGCC</gDNA_template>
            <first_frame> F  V  *  F  H  I  I  *  K  P  F  Y  N  F  S  I  F  F  M  Q  D  K  K  K  N  C  P  S  V  L  L  Y  T  D  L  L  L  I  I  I  H  K  R  I  A  C  S  I  A  S  *  S  *  I  Q  M  I  H  K  F  T  T  V  G  N  T  *  T  N  N  C  C  S  K  L  L  H  T  S  F  L  M  K  E  E  N  *  C  C  S  S  N  L  P  P  P  L  S  N  K  H  R  *  T  L  V  L  T  S  K  K  M  K  P  L  C  P  W  R  R  </first_frame>
            <second_frame>  L  F  D  F  T  *  F  K  N  H  F  T  I  F  L  F  F  S  C  K  T  K  K  K  I  V  L  V  F  C  C  T  L  I  Y  C  *  L  *  F  I  K  G  L  L  A  Q  L  L  V  K  V  E  S  K  *  S  I  N  L  Q  Q  *  E  I  L  K  L  I  T  V  V  L  S  F  F  I  L  H  F  S  *  K  K  K  I  D  V  A  A  A  T  Y  L  P  P  S  P  T  S  T  D  E  L  *  Y  L  L  V  K  R  *  N  L  C  V  R  G  V  A </second_frame>
            <third_frame>   C  L  I  S  H  N  L  K  T  I  L  Q  F  F  Y  F  F  H  A  R  Q  K  K  K  L  S  *  C  F  V  V  H  *  F  T  A  N  Y  N  S  *  K  D  C  L  L  N  C  *  L  K  L  N  P  N  D  P  *  I  Y  N  S  R  K  Y  L  N  *  *  L  L  F  *  A  S  S  Y  F  I  S  H  E  R  R  K  L  M  L  Q  Q  Q  P  T  S  P  P  L  Q  Q  A  Q  M  N  S  S  T  Y  *  *  K  D  E  T  F  V  S  V  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0122G20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="36517" PGL_stop="32211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35671" e_stop="35162"/>
            <exon e_start="34792" e_stop="34706"/>
            <exon e_start="33474" e_stop="33416"/>
            <exon e_start="33330" e_stop="33239"/>
            <exon e_start="33130" e_stop="33053"/>
            <exon e_start="32943" e_stop="32783"/>
            <exon e_start="32693" e_stop="32211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.272" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="35671" e_stop="35162" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34792" e_stop="34706" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34705" i_stop="33475" i_length="1231"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33474" e_stop="33416" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33330" e_stop="33239" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.933">
            <gDNA_intron_boundary i_start="33238" i_stop="33131" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33130" e_stop="33053" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.272" acc_prob="0.973">
            <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32943" e_stop="32783" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32782" i_stop="32694" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="32693" e_stop="32211" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35671" stop="35162"/>
              <exon start="34792" stop="34727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35666" stop="35162"/>
              <exon start="34792" stop="34706"/>
              <exon start="33474" stop="33416"/>
              <exon start="33330" stop="33257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35258" stop="35162"/>
              <exon start="34792" stop="34706"/>
              <exon start="33474" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35251" stop="35162"/>
              <exon start="34792" stop="34706"/>
              <exon start="33474" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33053"/>
              <exon start="32943" stop="32805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33430" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33110" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33097" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32525" stop="32230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32525" stop="32230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG : GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT : GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG : GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG : GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG : TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</gDNA_template>
            <first_frame> L  C  W  S  V  I  P  T  L  S  I  T  G  T  Y  G  H  G  A  I  D  *  E  K  Y  A  Q  V  G  V  P  K  *  P  I  *  V  L  Y  Y  R  L  H  R  V  F  V  G  Q  F  *  K  M  E  H  N  K  N  *  I  S  L  S  I  S  S  S  L  T  V  G  L  M  V  V  T  W  D  A  Y  C  L  K  N  I  P  L  R  S  L  L  I  L  R  C  F  C  W  L  S  I  V  L  N  L  L  L  *  P  V  G  K  Y  S  S  R  I  T  R  Q  L  I  V  I  L  I  I  F  S  F  R  L  L  V  *  T  C  R  I  S  I  P  Y  P  F  Q  W  G  P  P  S  F  N  A  G  E  A  F  A  M  M  M  A  S  F  V  A  L  V  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q  :  G  V  G  I  L  L  S  G  L  F  G  T  G  N  G  S  S  V  S  V :   E  N  A  G  L  L  A  L  T  R  V  G  S  R  R  V  V  Q  I  S  A  A  F  M  I  F  F  S  I  L   : G  K  F  G  A  V  F  A  S  I  P  A  P  I  V  G  A  L  Y  C  L  F  F  A  Y  V   : G  A  G  G  L  G  F  L  Q  F  C  N  L  N  S  F  R  T  K  F  I  L  G  F  S  V  F  L  G  L  S  I  P  Q  Y  F  N  E  Y  T  A  V  A  G  Y  G  P  V  H  T  H  A  R  W  :  F  N  D  M  A  N  V  P  F  Q  S  K  A  F  V  A  G  I  V  A  F  F  L  D  N  T  M  H  K  K  D  G  Q  T  R  K  D  R  G  K  H  W  W  D  K  F  K  S  F  K  T  D  T  R  S  E  E  F  Y  S  L  P  F  N  L  N  K  Y  F  P  S  V  *  F  G  D  A  T  D  T  K  V  S  S  F  Y  *  *  V  L  E  F  I  C  A  C  W  R  G  G  E  V  G  C  C  C  N  I  N  F  L  L  S  *  E  M  K  Y  E  E  A  *  N  N  S  Y  *  F  K  Y  F  L  L  L  *  I  Y  G  S  F  G  F  N  F  N  *  Q  L  S  K  Q  S  F  Y  E  L  *  L  A  V  N </first_frame>
            <second_frame>  C  A  G  L  L  F  P  H  *  A  *  L  A  H  M  V  M  V  L  *  I  R  K  S  T  H  K  W  V  S  Q  S  N  L  S  E  S  Y  I  I  D  C  I  E  C  L  L  V  N  F  E  K  W  S  I  T  K  I  R  F  R  Y  P  F  H  L  L  L  L  L  V  L  W  L  *  H  G  M  H  I  V  *  K  T  F  H  Y  V  H  Y  S  Y  *  G  V  F  V  G  *  V  L  F  L  I  C  Y  F  S  L  *  E  N  I  P  L  E  L  R  G  N  L  L  *  F  *  *  F  S  L  F  V  C  W  F  E  P  A  G  L  V  F  L  T  L  S  N  G  D  L  L  H  S  M  L  V  K  H  L  L  *  *  W  L  V  L  L  L  *  *  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G  R :   E  L  A  F  Y  Y  Q  D  Y  L  A  L  G  M  D  L  L  Y  P   : W  R  M  L  V  Y  *  H  *  H  V  L  A  V  E  E  L  F  R  Y  L  L  R  S  *  F  S  F  Q  F  S  :  G  N  L  E  L  S  L  L  Q  F  L  H  L  L  L  V  L  Y  I  A  F  S  S  L  M  *  :  A  L  E  A  *  V  F  F  S  S  A  I  L  I  V  S  A  P  S  L  Y  *  V  S  P  S  F  L  A  C  P  F  H  S  T  S  M  S  I  L  L  L  L  V  M  D  L  F  T  H  M  Q  D  G :   S  T  T  W  P  T  F  P  F  N  Q  K  L  L  W  R  V  S  L  P  F  S  W  T  T  Q  C  T  K  R  M  A  R  Q  E  R  T  E  A  S  T  G  G  T  N  S  S  P  S  R  L  T  R  E  V  R  N  S  T  P  S  L  S  I  *  T  S  I  S  H  L  C  D  L  A  T  P  R  T  Q  R  F  H  L  F  T  S  K  Y  *  S  S  S  V  L  V  G  E  G  G  R  *  V  A  A  A  T  S  I  F  F  F  H  E  K  *  S  M  K  K  L  R  T  T  V  I  S  L  S  I  S  Y  C  C  K  F  M  D  H  L  D  S  T  L  T  S  N  *  A  S  N  P  F  M  N  Y  N  *  Q  *   </second_frame>
            <third_frame>   V  L  V  C  Y  S  H  T  E  H  N  W  H  I  W  S  W  C  Y  R  L  G  K  V  R  T  S  G  C  P  K  V  T  Y  L  S  L  I  L  S  T  A  *  S  V  C  W  S  I  L  K  N  G  A  *  Q  K  L  D  F  V  I  H  F  I  F  S  Y  C  W  S  Y  G  C  D  M  G  C  I  L  F  E  K  H  S  I  T  F  I  T  H  I  K  V  F  L  L  V  K  Y  C  S  *  F  V  T  L  A  C  R  K  I  F  L  *  N  Y  E  A  T  Y  C  N  F  N  N  F  L  F  S  F  A  G  L  N  L  Q  D  *  Y  S  L  P  F  P  M  G  T  S  F  I  Q  C  W  *  S  I  C  Y  D  D  G  *  F  C  C  S  S  R   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A   : G  S  W  H  S  T  I  R  I  I  W  H  W  E  W  I  F  C  I  R  :  G  E  C  W  S  I  S  I  D  T  C  W  Q  *  K  S  C  S  D  I  C  C  V  H  D  F  L  F  N  S  R :   E  I  W  S  C  L  C  F  N  S  C  T  Y  C  W  C  F  I  L  P  F  L  R  L  C  R :   R  W  R  L  R  F  S  S  V  L  Q  S  *  *  F  P  H  Q  V  Y  I  R  F  L  R  L  S  W  L  V  H  S  T  V  L  Q  *  V  Y  C  C  C  W  L  W  T  C  S  H  T  C  K  M   : V  Q  R  H  G  Q  R  S  L  S  I  K  S  F  C  G  G  Y  R  C  L  F  P  G  Q  H  N  A  Q  K  G  W  P  D  K  K  G  Q  R  Q  A  L  V  G  Q  I  Q  V  L  Q  D  *  H  E  K  *  G  I  L  L  P  P  F  Q  S  E  Q  V  F  P  I  C  V  I  W  R  R  H  G  H  K  G  F  I  F  L  L  V  S  T  R  V  H  L  C  L  L  E  R  G  G  G  R  L  L  L  Q  H  Q  F  S  S  F  M  R  N  E  V  *  R  S  L  E  Q  Q  L  L  V  *  V  F  P  T  V  V  N  L  W  I  I  W  I  Q  L  *  L  A  I  E  Q  A  I  L  L  *  I  I  I  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0122G20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35266" stop="35162"/>
                    <exon start="34792" stop="34706"/>
                    <exon start="33474" stop="33416"/>
                    <exon start="33330" stop="33239"/>
                    <exon start="33130" stop="33053"/>
                    <exon start="32943" stop="32783"/>
                    <exon start="32693" stop="32475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCRISIPYPFQWGPPSFNAGEAFAMMMASFVALVESTGAFIAVARYASATPLPPSILSRGVGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAAFMIFFSILGKFGAVFASIPAPIVGALYCLFFAYVGAGGLGFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAVAGYGPVHTHARWFNDMANVPFQSKAFVAGIVAFFLDNTMHKKDGQTRKDRGKHWWDKFKSFKTDTRSEEFYSLPFNLNKYFPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36517" e_stop="36333"/>
            <exon e_start="35258" e_stop="35162"/>
            <exon e_start="34792" e_stop="34706"/>
            <exon e_start="33474" e_stop="33416"/>
            <exon e_start="33330" e_stop="33239"/>
            <exon e_start="33130" e_stop="33053"/>
            <exon e_start="32943" e_stop="32783"/>
            <exon e_start="32693" e_stop="32211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.272" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36517" e_stop="36333" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36332" i_stop="35259" i_length="1074"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35258" e_stop="35162" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="35161" i_stop="34793" i_length="369"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34792" e_stop="34706" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34705" i_stop="33475" i_length="1231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33474" e_stop="33416" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33415" i_stop="33331" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33330" e_stop="33239" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.933">
            <gDNA_intron_boundary i_start="33238" i_stop="33131" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33130" e_stop="33053" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.272" acc_prob="0.973">
            <gDNA_intron_boundary i_start="33052" i_stop="32944" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32943" e_stop="32783" e_length="161"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32782" i_stop="32694" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="32693" e_stop="32211" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36517" stop="36333"/>
              <exon start="35258" stop="35162"/>
              <exon start="34792" stop="34706"/>
              <exon start="33474" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35258" stop="35162"/>
              <exon start="34792" stop="34706"/>
              <exon start="33474" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35251" stop="35162"/>
              <exon start="34792" stop="34706"/>
              <exon start="33474" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33053"/>
              <exon start="32943" stop="32805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33430" stop="33416"/>
              <exon start="33330" stop="33239"/>
              <exon start="33130" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33110" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33097" stop="33053"/>
              <exon start="32943" stop="32783"/>
              <exon start="32693" stop="32234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32525" stop="32230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32525" stop="32230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG : GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG : GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT : GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG : GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG : GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG : TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</gDNA_template>
            <first_frame> Y  L  A  H  L  I  R  P  G  K  N  I  F  D  R  F  A  V  L  F  T  V  I  I  V  W  I  Y  A  H  L  L  T  V  G  G  A  Y  N  G  K  P  P  K  T  Q  A  S  C  R  T  D  R  A  G  L  I  S  G  A  Q  W :   I  S  I  P  Y  P  F  Q  W  G  P  P  S  F  N  A  G  E  A  F  A  M  M  M  A  S  F  V  A  L  V  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q  :  G  V  G  I  L  L  S  G  L  F  G  T  G  N  G  S  S  V  S  V :   E  N  A  G  L  L  A  L  T  R  V  G  S  R  R  V  V  Q  I  S  A  A  F  M  I  F  F  S  I  L   : G  K  F  G  A  V  F  A  S  I  P  A  P  I  V  G  A  L  Y  C  L  F  F  A  Y  V   : G  A  G  G  L  G  F  L  Q  F  C  N  L  N  S  F  R  T  K  F  I  L  G  F  S  V  F  L  G  L  S  I  P  Q  Y  F  N  E  Y  T  A  V  A  G  Y  G  P  V  H  T  H  A  R  W  :  F  N  D  M  A  N  V  P  F  Q  S  K  A  F  V  A  G  I  V  A  F  F  L  D  N  T  M  H  K  K  D  G  Q  T  R  K  D  R  G  K  H  W  W  D  K  F  K  S  F  K  T  D  T  R  S  E  E  F  Y  S  L  P  F  N  L  N  K  Y  F  P  S  V  *  F  G  D  A  T  D  T  K  V  S  S  F  Y  *  *  V  L  E  F  I  C  A  C  W  R  G  G  E  V  G  C  C  C  N  I  N  F  L  L  S  *  E  M  K  Y  E  E  A  *  N  N  S  Y  *  F  K  Y  F  L  L  L  *  I  Y  G  S  F  G  F  N  F  N  *  Q  L  S  K  Q  S  F  Y  E  L  *  L  A  V  N </first_frame>
            <second_frame>  I  W  H  T  *  Y  V  Q  G  R  I  Y  L  I  V  L  L  F  F  S  R  *  S  L  Y  G  F  M  H  T  Y  S  L  W  A  G  L  T  M  E  S  H  R  R  H  K  Q  A  A  E  L  T  V  L  D  S  L  V  V  L  N   : G  L  V  F  L  T  L  S  N  G  D  L  L  H  S  M  L  V  K  H  L  L  *  *  W  L  V  L  L  L  *  *  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G  R :   E  L  A  F  Y  Y  Q  D  Y  L  A  L  G  M  D  L  L  Y  P   : W  R  M  L  V  Y  *  H  *  H  V  L  A  V  E  E  L  F  R  Y  L  L  R  S  *  F  S  F  Q  F  S  :  G  N  L  E  L  S  L  L  Q  F  L  H  L  L  L  V  L  Y  I  A  F  S  S  L  M  *  :  A  L  E  A  *  V  F  F  S  S  A  I  L  I  V  S  A  P  S  L  Y  *  V  S  P  S  F  L  A  C  P  F  H  S  T  S  M  S  I  L  L  L  L  V  M  D  L  F  T  H  M  Q  D  G :   S  T  T  W  P  T  F  P  F  N  Q  K  L  L  W  R  V  S  L  P  F  S  W  T  T  Q  C  T  K  R  M  A  R  Q  E  R  T  E  A  S  T  G  G  T  N  S  S  P  S  R  L  T  R  E  V  R  N  S  T  P  S  L  S  I  *  T  S  I  S  H  L  C  D  L  A  T  P  R  T  Q  R  F  H  L  F  T  S  K  Y  *  S  S  S  V  L  V  G  E  G  G  R  *  V  A  A  A  T  S  I  F  F  F  H  E  K  *  S  M  K  K  L  R  T  T  V  I  S  L  S  I  S  Y  C  C  K  F  M  D  H  L  D  S  T  L  T  S  N  *  A  S  N  P  F  M  N  Y  N  *  Q  *   </second_frame>
            <third_frame>   S  G  T  P  D  T  S  R  E  E  Y  I  *  S  F  C  C  S  F  H  G  D  H  C  M  D  L  C  T  P  T  H  C  G  R  G  L  Q  W  K  A  T  E  D  T  S  K  L  Q  N  *  P  C  W  T  H  *  W  C  S  M  :  D  *  Y  S  L  P  F  P  M  G  T  S  F  I  Q  C  W  *  S  I  C  Y  D  D  G  *  F  C  C  S  S  R   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A   : G  S  W  H  S  T  I  R  I  I  W  H  W  E  W  I  F  C  I  R  :  G  E  C  W  S  I  S  I  D  T  C  W  Q  *  K  S  C  S  D  I  C  C  V  H  D  F  L  F  N  S  R :   E  I  W  S  C  L  C  F  N  S  C  T  Y  C  W  C  F  I  L  P  F  L  R  L  C  R :   R  W  R  L  R  F  S  S  V  L  Q  S  *  *  F  P  H  Q  V  Y  I  R  F  L  R  L  S  W  L  V  H  S  T  V  L  Q  *  V  Y  C  C  C  W  L  W  T  C  S  H  T  C  K  M   : V  Q  R  H  G  Q  R  S  L  S  I  K  S  F  C  G  G  Y  R  C  L  F  P  G  Q  H  N  A  Q  K  G  W  P  D  K  K  G  Q  R  Q  A  L  V  G  Q  I  Q  V  L  Q  D  *  H  E  K  *  G  I  L  L  P  P  F  Q  S  E  Q  V  F  P  I  C  V  I  W  R  R  H  G  H  K  G  F  I  F  L  L  V  S  T  R  V  H  L  C  L  L  E  R  G  G  G  R  L  L  L  Q  H  Q  F  S  S  F  M  R  N  E  V  *  R  S  L  E  Q  Q  L  L  V  *  V  F  P  T  V  V  N  L  W  I  I  W  I  Q  L  *  L  A  I  E  Q  A  I  L  L  *  I  I  I  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0122G20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36517" stop="36333"/>
                    <exon start="35258" stop="35162"/>
                    <exon start="34792" stop="34706"/>
                    <exon start="33474" stop="33416"/>
                    <exon start="33330" stop="33239"/>
                    <exon start="33130" stop="33053"/>
                    <exon start="32943" stop="32783"/>
                    <exon start="32693" stop="32475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLAHLIRPGKNIFDRFAVLFTVIIVWIYAHLLTVGGAYNGKPPKTQASCRTDRAGLISGAQWISIPYPFQWGPPSFNAGEAFAMMMASFVALVESTGAFIAVARYASATPLPPSILSRGVGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAAFMIFFSILGKFGAVFASIPAPIVGALYCLFFAYVGAGGLGFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAVAGYGPVHTHARWFNDMANVPFQSKAFVAGIVAFFLDNTMHKKDGQTRKDRGKHWWDKFKSFKTDTRSEEFYSLPFNLNKYFPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 54456 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 2016 bytes was the average size of a spliced alignment
$ 8784 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2928 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 93 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:40:38
-->
