<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 06:15:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1543" ref_strand="+" ref_description="SGN-M1543 T0687 [cos_markers]">
      <seq>tttagtacaggattttcatttgaaaaactcatctctcagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8137" stop="7239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7837" g_stop="7539" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-M1543" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7837" e_stop="7539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</genome_strand>
        <mrna_strand>TTTAGTACAGGATTTTCATTTGAAAAACTCATCTCTCAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7933-2" ref_strand="+" ref_description="SGN-M7933-2 C2_At3g46780-2 [cosii_markers]">
      <seq>atcaaatgccagcagatatagaatttcattattttttaaaaacacaaattttttcatgcaaaatatagtaactaaatagaaagagttagcaattcatctgctatctctttccaaaaataaaataaaattcatatctcatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaacaattctggcaaccccttcaactttgatttcggtaagttgcctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtgatctctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctagcaaagttgtggttactattggtaagggagaaaacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatacaagctgcacaattagctggtgttgggcatgtggccatagtctatgatgaatcttcttcaggaggctctacatacaatgtgctcgacggaattacatctttcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtggagacagatctaagctatacactcataaaaaccaaattaacagaggatttctcccctgagagctcatacaaaattgttgtttcagctgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11505" stop="8676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11260" g_stop="10959" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="527" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9165" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="980" r_length="453" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8995" g_stop="8976" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1000" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-M7933-2" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1008</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7933-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11260" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9165"/>
          <exon e_start="8995" e_stop="8976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGCCA-CAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGC</genome_strand>
        <mrna_strand>ATCAAATGCCAGCAGATATAGAATTTCAT-TA--TTTTTT-AAAAACACAA-A-TTTTTTCATGCAAAATATAGTAACTAAATAGAAAGAGTTAGCAATTCATCTGCTATCTCTTTC--CAAAAATAAAAT-AAAATTCATATCTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAAACAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTGCCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTGATCTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAGCAAAGTTGTGGTTACTATTGGTAAGGGAGAAAACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATACAAGCTGCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTCTTCAGGAGGCTCTACATACAATGTGCTCGACGGAATTACATCTTTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTGGAGACAGATCTAAGCTATACACTCATAAAAACCAAATTAACAGAGGATTTCTCCCCTGAGAGCTCATACAAAATTGTTGTTTCAGCTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7933" ref_strand="+" ref_description="SGN-M7933 C2_At3g46780 [cosii_markers]">
      <seq>agatatacaatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11548" stop="9013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11248" g_stop="10959" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="523" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9313" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="828" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-M7933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11248" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT</genome_strand>
        <mrna_strand>AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M516-R" ref_strand="+" ref_description="SGN-M516-R CT216-R [rflp_markers_reverse]">
      <seq>tttttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54838" stop="55957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55138" g_stop="55657" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-M516-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M516-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55138" e_stop="55657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGAT</genome_strand>
        <mrna_strand>TTTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M516-F" ref_strand="+" ref_description="SGN-M516-F CT216-F [rflp_markers_forward]">
      <seq>ctttttttttttttcaaacaacaccaaaaaaaagttgagtattcacagcttaagttttctttcaattgctataaaaaaaaacaatggtctttctattacttataattactgctacaaattcaacaaaatgacactaaaaatgtattgaatttcatatcaaagccttctctatttacatattcccaacaaaatggcatcttttctctatgccatataggccgctctcttatccatcaatcttctacttctagtcgactgctctagaaccaaactttctctttttttagtgctcccttcccactcaacaggtaataatttaaagaacgacattattgtcttcttcttctaatcgactgctctaccaatcacacattgccttacacttggcatcgggggatatcgtcttctgcttctagtcgactgctctataaaaataataattgaatattggcggtttccgactaaggaattaccatcttgttactccattacgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57190" stop="56100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56897" g_stop="56400" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-M516-F" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M516-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56897" e_stop="56400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAAATTTGATTCAAACAACACCAAAAAAAAAGTTGAGTATTCACAGCTTAAGTTTTCTTTCAATTGCTATAAAAAAAAACAATGGTCTTTCTATTACTTATAATTACTGCTACAAATTCAACAAAATGACACTAAAAATGTATTGAATTTCATATCAAAGCCTTCTCTATTTACATATTCCCAACAAAATGGCATCTTTTCTCTATGCCATATAGGCCGCTCTCTTAGCCATCAATCTTCTACTTCTAGTCGACTGCTCTAGAACCGAACTTTCTCTTTTTTTAGTGCTCCCTTCCCACTCAACAGGTAATAATTTAAAGAACGACATTATTGTCTTCTTCTTCTAGTCGACTGCTCTACCAATCACACATTGCCTTACACTTGGCATCGGGGGTTATCGTCTTCTGCTTCTAGTCGACTGCTCTATAAAAATAATAATTGAAAATTGGCGTTTTCCGACTAAGTAATTACCATCTTGTTACTCCATTACGTTCT</genome_strand>
        <mrna_strand>CTTTTTTTTTTTTTCAAACAACACC-AAAAAAAAGTTGAGTATTCACAGCTTAAGTTTTCTTTCAATTGCTATAAAAAAAAACAATGGTCTTTCTATTACTTATAATTACTGCTACAAATTCAACAAAATGACACTAAAAATGTATTGAATTTCATATCAAAGCCTTCTCTATTTACATATTCCCAACAAAATGGCATCTTTTCTCTATGCCATATAGGCCGCTCTCTTATCCATCAATCTTCTACTTCTAGTCGACTGCTCTAGAACCAAACTTTCTCTTTTTTTAGTGCTCCCTTCCCACTCAACAGGTAATAATTTAAAGAACGACATTATTGTCTTCTTCTTCTAATCGACTGCTCTACCAATCACACATTGCCTTACACTTGGCATCGGGGGATATCGTCTTCTGCTTCTAGTCGACTGCTCTATAAAAATAATAATTGAATATTGGCGGTTTCCGACTAAGGAATTACCATCTTGTTACTCCATTACGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9132" ref_strand="+" ref_description="SGN-M9132 C2_At5g59520 [cosii_markers]">
      <seq>ttccataaaaaagtcaactactctgttaacactattcctgtttttgttcttgaaatttttaattatcaatggtcatggtggagctgatgatgatgatgaacatgattcaaatggagatacaaatacaaatttacgcgcgaaaggattgattcttgttaaaatttattgcttgatcatactctttgtaactacatttgttggtggcgtatcgccttatttctatcgatggaatgaggggtttctcttgttaggaactcaatttgctggtggtgttttcttagggacttcattgatgcattttttgagtgattctgctacaacttttggtgtacttacagaaaaagagtacccttttgccttcatgttggcttctgcaggttatcttctcactatgtttagtgattgcattattatgtttgtgacaaaggggggtgtaaatgaatcaagtgagtccaaagttgaagtggatgaagaaggaaggtcaactaatattgatgagggacatggaacaaatccatttctaaagacaacttcacttggggatacaatacttctcattcttgcattgtgtttccactctatttttgaaggcattgctgttggagtatcagcttcaaagggagaggcatggagaaacctatggacaatttcattgcacaaaatatttgcagccattgcaatgggaattgcacttttaagaatgataccaaaaaggccatttctacttacttgtgcttactcttttgcctttgcaatttcaagccctataggtgtgggtataggaattgcaattgatgctactagtgaaggccgtacagctgattggacttatgctatttcaatggcaattgcttgtggggtttttatttatgtggcaattaatcacctaattgcaaaagggtttaaaccacaaaataaatgttattttgatactcaattcttcaagtttgttgctgtccttctaggtgttggggtgattgctgttgtcatgatatgggactaaattaaactaccttgttcagactcttcaaaatgtcgacaattgtatgttgcgtccttcaaaaatagtgcttttttttaagacctgatacggtgtgtgaacattattggagagttcgtgatgaactatgtaaacattcattttttgaattttacatggggttttgctaatctttattggtttgtttcttttgagattgaatatgcgtgcatgcatttttttttttcagtacaacattgggtattgattttataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90152" stop="93391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90452" g_stop="90828" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90829" i_stop="91086" i_length="258">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91087" g_stop="91320" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="611" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92445" g_stop="93094" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="1260" r_length="649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-M9132" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1261</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90452" e_stop="90828"/>
          <exon e_start="91087" e_stop="91320"/>
          <exon e_start="92445" e_stop="93094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAGGTTAATTACCTATCGTAGCAGATAACCTATCTTATTAAATCTCGCTTTTTATAAATTTTTTAGGAGCTTTGATAGTTTGAAAATATCTTTAGACTACTGATGATGTATGTAACTTAAATTCTTATCAATTGTTATTGCATCATAACGCGTTCATGTTAAATCCTCCAAATGCAATACTACTAGAGGATCTGTCACACATCTGACAACATTATGAGGAACGCGCAAATCAAATAAAATGAGTAACTTTTTTTTTTGTAGGTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAGGTAAATAAACTATTGGGTATATATAATATTTTCTTTATTTATGTTGAGAGACTATCTCCGGGAGATTATATATAGATACAGACAGTATAAAGAAATAGATTATTTTAAGTGACCTAAGTTGATAGTGTTAAAAATCTACACACTATCAATAGTTCAATACACTATGTTAACCTAGAACATCTAGGGAATGTGTTACATGAGGACTAGAGGATGCTTGTTTTTAGTGAAAATAGAGTTTTACCTTCTTTAGTTTCATTTCATATTTGCTTTTGTAGAAAAACATTTACTCATTGTGATAATCCTAAATTAATAATACCATCAAGGGATACTATGCTTTCCTTCCGATATCCTTAACCAAATGTCTCGCATTTGAGCTATGGTAATAAAGAAAATATTTCAATATATATAGGGAATACTTTACTCTCCTTAGTATGCCTACATACCACGAATATGGATAGCTAGTCGGGTCAATACATAGGTCTCGGATAATTGCCCAAAAAAGGAGAATCGTCTTCAATAATGTGCTTTGGTGTAGGATATTTACTCTGAGTTTCTTATCATAAAATAAGTTATCATTTTCCTAAAAGGAAAACATAAAGTTTCCATATTTGTAGGAAATTGCTTAGGACTCTATAAATAGAGACATATTTGTTCTAACATAATTAACATTCACAATGTAGTCCTAGGAGCTTCGAGAGTTTTGGTTAGGAGAGAGAATTTGTGGGATACAAGTGATGCGTTATTACTTCCGTGAGCCTCTTTTTATTCCGAGTGAATTGTGTGAGGTTATTGCGTACTCTCGTATTTATAGTGGATTGTTCATCTCTTTTGTGGATGTAGGTCGATTGACCGAACCACCTTAGATCTTTGTGTCTTTTTGTATATTTCTCGTTTTGTCTTCTGACTTGTGGTCTTTCGAGGTTTGCTTTGTTAGGTTACACATGACACTTTAGTCCTAACACTTAAGTGGAGAAAAATCCCCTAATTGCCCTACAAAAACCCTAAAATTTTAGCTAAGAACTTTGTCACTTAATCCTTGCTAAATAAGATTATCAACATATTTTACTGTTTAGCTACAAAATTTATCCGTCGCTAATCCTCACATTCCTTGATGTAATTTTCAGCTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAATCTTTATTGTTTTGTTTCTTTTGAGATTGAATTATGCGTGCATGCATTTTTTTTTTCCAGTACAACATTGGTTATTGATTTTATATAAGCA</genome_strand>
        <mrna_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAG..................................................................................................................................................................................................................................................................GTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAATCTTTATTGGTTTGTTTCTTTTGAGATTGAA-TATGCGTGCATGCATTTTTTTTTTTCAGTACAACATTGGGTATTGATTTTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7837" PGL_stop="7539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7837" e_stop="7539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="7837" e_stop="7539" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7837" stop="7539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</gDNA_template>
            <first_frame> F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *   </first_frame>
            <second_frame>  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  </second_frame>
            <third_frame>   *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7837" stop="7550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11260" PGL_stop="8976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11260" e_stop="10959"/>
            <exon e_start="10160" e_stop="9928"/>
            <exon e_start="9617" e_stop="9165"/>
            <exon e_start="8995" e_stop="8976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.949"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11260" e_stop="10959" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10160" e_stop="9928" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="9617" e_stop="9165" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8995" e_stop="8976" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11260" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9165"/>
              <exon start="8995" stop="8976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7933-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11248" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA : GTGGGGAAGTCTCAGATAGC</gDNA_template>
            <first_frame> I  K  C  H  R  Y  T  I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   *  V  T  *  C  D  V  F  D  T  C  *  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *   : S  G  E  V  S  D  S </first_frame>
            <second_frame>  S  N  A  T  D  I  Q  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : G  K  L  P  D  V  T  S  L  I  P  A  S  T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  :  V  G  K  S  Q  I   </second_frame>
            <third_frame>   Q  M  P  Q  I  Y  N  F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  V  S  Y  L  M  *  R  L  *  Y  L  L  A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K :   W  G  S  L  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11133" stop="10959"/>
                    <exon start="10160" stop="9928"/>
                    <exon start="9617" stop="9165"/>
                    <exon start="8995" stop="8978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNSYPMAPTLTSNSFLLSTTPHPRLSFKNPRFIVSAKKSGQNQETTTNSGNPFNFDFGKLPDVTSLIPASTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVGKSQI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="55138" PGL_stop="55657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55138" e_stop="55657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="55138" e_stop="55657" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55138" stop="55657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M516-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGAT</gDNA_template>
            <first_frame> S  F  F  L  L  G  N  L  F  Y  I  L  R  R  A  K  S  E  H  N  L  G  V  L  S  Y  W  I  *  P  G  L  L  G  *  V  L  T  D  L  R  R  L  Q  M  S  S  Y  W  C  Y  R  C  T  R  F  V  R  I  S  V  G  N  D  V  V  C  P  H  C  D  S  G  F  I  E  V  A  E  G  N  I  G  S  P  E  S  R  R  R  F  P  M  W  N  E  R  P  E  S  D  R  S  V  N  M  G  S  R  R  S  R  R  N  R  G  D  R  S  P  F  N  P  V  I  V  L  R  S  P  S  E  A  P  G  E  D  E  A  A  A  A  A  E  E  R  S  Y  E  L  Y  Y  D  D  G  E  G  S  G  L  R  P  L  P  P  T  M  S  E  F  L  M  G  </first_frame>
            <second_frame>  L  F  F  S  *  E  T  F  F  I  F  S  G  E  P  N  R  S  I  I  W  G  F  *  V  I  G  S  N  R  V  Y  W  V  E  F  *  L  I  S  G  D  C  R  C  L  R  T  G  V  I  G  V  Q  G  L  L  E  F  Q  L  E  T  M  L  F  V  L  T  V  I  V  D  L  *  K  L  L  R  E  I  L  G  R  R  N  L  A  G  G  F  P  C  G  T  N  G  Q  S  Q  I  G  V  *  T  W  V  L  D  G  A  G  V  I  G  V  I  D  L  R  L  I  R  L  L  F  F  V  V  H  L  K  H  L  G  R  M  K  L  L  Q  L  Q  R  S  G  V  M  S  F  I  M  M  M  V  K  V  Q  V  S  G  R  C  R  R  R  C  R  S  F  *  W  D </second_frame>
            <third_frame>   F  F  S  L  R  K  P  F  L  Y  S  P  A  S  Q  I  G  A  *  F  G  G  F  E  L  L  D  L  T  G  F  I  G  L  S  F  D  *  S  P  A  T  A  D  V  F  V  L  V  L  S  V  Y  K  V  C  *  N  F  S  W  K  R  C  C  L  S  S  L  *  *  W  I  Y  R  S  C  *  G  K  Y  W  V  A  G  I  S  P  E  V  S  H  V  E  R  T  A  R  V  R  S  E  C  E  H  G  F  S  T  E  Q  A  *  S  G  *  *  I  S  V  *  S  G  Y  C  S  S  *  S  I  *  S  T  W  G  G  *  S  C  C  S  C  R  G  A  E  L  *  A  L  L  *  *  W  *  R  F  R  S  Q  A  V  A  A  D  D  V  G  V  F  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55243" stop="55656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTDLRRLQMSSYWCYRCTRFVRISVGNDVVCPHCDSGFIEVAEGNIGSPESRRRFPMWNERPESDRSVNMGSRRSRRNRGDRSPFNPVIVLRSPSEAPGEDEAAAAAEERSYELYYDDGEGSGLRPLPPTMSEFLMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="56897" PGL_stop="56400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56897" e_stop="56400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="56897" e_stop="56400" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56897" stop="56400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M516-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGACAAATTTGATTCAAACAACACCAAAAAAAAAGTTGAGTATTCACAGCTTAAGTTTTCTTTCAATTGCTATAAAAAAAAACAATGGTCTTTCTATTACTTATAATTACTGCTACAAATTCAACAAAATGACACTAAAAATGTATTGAATTTCATATCAAAGCCTTCTCTATTTACATATTCCCAACAAAATGGCATCTTTTCTCTATGCCATATAGGCCGCTCTCTTAGCCATCAATCTTCTACTTCTAGTCGACTGCTCTAGAACCGAACTTTCTCTTTTTTTAGTGCTCCCTTCCCACTCAACAGGTAATAATTTAAAGAACGACATTATTGTCTTCTTCTTCTAGTCGACTGCTCTACCAATCACACATTGCCTTACACTTGGCATCGGGGGTTATCGTCTTCTGCTTCTAGTCGACTGCTCTATAAAAATAATAATTGAAAATTGGCGTTTTCCGACTAAGTAATTACCATCTTGTTACTCCATTACGTTCT</gDNA_template>
            <first_frame> R  Q  I  *  F  K  Q  H  Q  K  K  S  *  V  F  T  A  *  V  F  F  Q  L  L  *  K  K  T  M  V  F  L  L  L  I  I  T  A  T  N  S  T  K  *  H  *  K  C  I  E  F  H  I  K  A  F  S  I  Y  I  F  P  T  K  W  H  L  F  S  M  P  Y  R  P  L  S  *  P  S  I  F  Y  F  *  S  T  A  L  E  P  N  F  L  F  F  *  C  S  L  P  T  Q  Q  V  I  I  *  R  T  T  L  L  S  S  S  S  S  R  L  L  Y  Q  S  H  I  A  L  H  L  A  S  G  V  I  V  F  C  F  *  S  T  A  L  *  K  *  *  L  K  I  G  V  F  R  L  S  N  Y  H  L  V  T  P  L  R  S </first_frame>
            <second_frame>  D  K  F  D  S  N  N  T  K  K  K  V  E  Y  S  Q  L  K  F  S  F  N  C  Y  K  K  K  Q  W  S  F  Y  Y  L  *  L  L  L  Q  I  Q  Q  N  D  T  K  N  V  L  N  F  I  S  K  P  S  L  F  T  Y  S  Q  Q  N  G  I  F  S  L  C  H  I  G  R  S  L  S  H  Q  S  S  T  S  S  R  L  L  *  N  R  T  F  S  F  F  S  A  P  F  P  L  N  R  *  *  F  K  E  R  H  Y  C  L  L  L  L  V  D  C  S  T  N  H  T  L  P  Y  T  W  H  R  G  L  S  S  S  A  S  S  R  L  L  Y  K  N  N  N  *  K  L  A  F  S  D  *  V  I  T  I  L  L  L  H  Y  V   </second_frame>
            <third_frame>   T  N  L  I  Q  T  T  P  K  K  K  L  S  I  H  S  L  S  F  L  S  I  A  I  K  K  N  N  G  L  S  I  T  Y  N  Y  C  Y  K  F  N  K  M  T  L  K  M  Y  *  I  S  Y  Q  S  L  L  Y  L  H  I  P  N  K  M  A  S  F  L  Y  A  I  *  A  A  L  L  A  I  N  L  L  L  L  V  D  C  S  R  T  E  L  S  L  F  L  V  L  P  S  H  S  T  G  N  N  L  K  N  D  I  I  V  F  F  F  *  S  T  A  L  P  I  T  H  C  L  T  L  G  I  G  G  Y  R  L  L  L  L  V  D  C  S  I  K  I  I  I  E  N  W  R  F  P  T  K  *  L  P  S  C  Y  S  I  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0147H20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="90452" PGL_stop="93094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90452" e_stop="90828"/>
            <exon e_start="91087" e_stop="91320"/>
            <exon e_start="92445" e_stop="93094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90452" e_stop="90828" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90829" i_stop="91086" i_length="258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91087" e_stop="91320" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="92445" e_stop="93094" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90452" stop="90828"/>
              <exon start="91087" stop="91320"/>
              <exon start="92445" stop="93094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAG : GTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG : CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAATCTTTATTGTTTTGTTTCTTTTGAGATTGAATTATGCGTGCATGCATTTTTTTTTTCCAGTACAACATTGGTTATTGATTTTATATAAGCA</gDNA_template>
            <first_frame> F  H  K  K  V  N  Y  S  V  N  T  I  P  V  F  V  L  E  I  F  N  Y  Q  W  S  W  W  S  *  *  *  *  *  T  *  F  K  W  R  Y  K  Y  K  F  T  R  E  R  I  D  S  C  *  N  L  L  L  D  H  T  L  C  N  Y  I  C  W  W  R  I  A  L  F  L  S  M  E  *  G  V  S  L  V  R  N  S  I  C  W  W  C  F  L  R  D  F  I  D  A  F  F  E  *  F  C  Y  N  F  W  C  T  Y  R  K  R  V  P  F  C  L  H  V  G  F  C  R :   L  S  S  H  Y  V  *  *  L  H  Y  Y  V  C  D  K  G  G  C  K  *  I  K  *  V  Q  S  *  S  G  *  R  R  K  V  N  *  Y  *  *  G  T  W  N  K  S  I  S  K  D  N  F  T  W  G  Y  N  T  S  H  S  C  I  V  F  P  L  Y  F  *  R  H  C  C  W  S  I  S :   F  K  G  R  G  M  E  K  P  M  D  N  F  I  A  Q  N  I  C  S  H  C  N  G  N  C  T  F  K  N  D  T  K  K  A  I  S  T  Y  L  C  L  L  F  C  L  C  N  F  K  P  Y  R  C  G  Y  R  N  C  N  *  C  Y  *  *  R  P  Y  S  *  L  D  L  C  Y  F  N  G  N  C  L  W  G  F  Y  L  C  G  N  *  S  P  N  C  K  R  V  *  T  T  K  *  M  L  F  *  Y  S  I  L  Q  V  C  C  C  P  S  R  C  W  G  D  C  C  C  H  D  M  G  L  N  *  T  T  L  F  R  L  F  K  M  S  T  I  V  C  C  V  L  Q  K  *  C  F  F  L  R  P  D  T  V  C  E  H  Y  W  R  V  R  D  E  L  C  K  H  S  F  F  E  F  Y  M  G  F  C  *  S  L  L  F  C  F  F  *  D  *  I  M  R  A  C  I  F  F  F  Q  Y  N  I  G  Y  *  F  Y  I  S  </first_frame>
            <second_frame>  S  I  K  K  S  T  T  L  L  T  L  F  L  F  L  F  L  K  F  L  I  I  N  G  H  G  G  A  D  D  D  D  E  H  D  S  N  G  D  T  N  T  N  L  R  A  K  G  L  I  L  V  K  I  Y  C  L  I  I  L  F  V  T  T  F  V  G  G  V  S  P  Y  F  Y  R  W  N  E  G  F  L  L  L  G  T  Q  F  A  G  G  V  F  L  G  T  S  L  M  H  F  L  S  D  S  A  T  T  F  G  V  L  T  E  K  E  Y  P  F  A  F  M  L  A  S  A   : G  Y  L  L  T  M  F  S  D  C  I  I  M  F  V  T  K  G  G  V  N  E  S  S  E  S  K  V  E  V  D  E  E  G  R  S  T  N  I  D  E  G  H  G  T  N  P  F  L  K  T  T  S  L  G  D  T  I  L  L  I  L  A  L  C  F  H  S  I  F  E  G  I  A  V  G  V  S   : A  S  K  G  E  A  W  R  N  L  W  T  I  S  L  H  K  I  F  A  A  I  A  M  G  I  A  L  L  R  M  I  P  K  R  P  F  L  L  T  C  A  Y  S  F  A  F  A  I  S  S  P  I  G  V  G  I  G  I  A  I  D  A  T  S  E  G  R  T  A  D  W  T  Y  A  I  S  M  A  I  A  C  G  V  F  I  Y  V  A  I  N  H  L  I  A  K  G  F  K  P  Q  N  K  C  Y  F  D  T  Q  F  F  K  F  V  A  V  L  L  G  V  G  V  I  A  V  V  M  I  W  D  *  I  K  L  P  C  S  D  S  S  K  C  R  Q  L  Y  V  A  S  F  K  N  S  A  F  F  *  D  L  I  R  C  V  N  I  I  G  E  F  V  M  N  Y  V  N  I  H  F  L  N  F  T  W  G  F  A  N  L  Y  C  F  V  S  F  E  I  E  L  C  V  H  A  F  F  F  S  S  T  T  L  V  I  D  F  I  *  A </second_frame>
            <third_frame>   P  *  K  S  Q  L  L  C  *  H  Y  S  C  F  C  S  *  N  F  *  L  S  M  V  M  V  E  L  M  M  M  M  N  M  I  Q  M  E  I  Q  I  Q  I  Y  A  R  K  D  *  F  L  L  K  F  I  A  *  S  Y  S  L  *  L  H  L  L  V  A  Y  R  L  I  S  I  D  G  M  R  G  F  S  C  *  E  L  N  L  L  V  V  F  S  *  G  L  H  *  C  I  F  *  V  I  L  L  Q  L  L  V  Y  L  Q  K  K  S  T  L  L  P  S  C  W  L  L  Q  :  V  I  F  S  L  C  L  V  I  A  L  L  C  L  *  Q  R  G  V  *  M  N  Q  V  S  P  K  L  K  W  M  K  K  E  G  Q  L  I  L  M  R  D  M  E  Q  I  H  F  *  R  Q  L  H  L  G  I  Q  Y  F  S  F  L  H  C  V  S  T  L  F  L  K  A  L  L  L  E  Y  Q  :  L  Q  R  E  R  H  G  E  T  Y  G  Q  F  H  C  T  K  Y  L  Q  P  L  Q  W  E  L  H  F  *  E  *  Y  Q  K  G  H  F  Y  L  L  V  L  T  L  L  P  L  Q  F  Q  A  L  *  V  W  V  *  E  L  Q  L  M  L  L  V  K  A  V  Q  L  I  G  L  M  L  F  Q  W  Q  L  L  V  G  F  L  F  M  W  Q  L  I  T  *  L  Q  K  G  L  N  H  K  I  N  V  I  L  I  L  N  S  S  S  L  L  L  S  F  *  V  L  G  *  L  L  L  S  *  Y  G  T  K  L  N  Y  L  V  Q  T  L  Q  N  V  D  N  C  M  L  R  P  S  K  I  V  L  F  F  K  T  *  Y  G  V  *  T  L  L  E  S  S  *  *  T  M  *  T  F  I  F  *  I  L  H  G  V  L  L  I  F  I  V  L  F  L  L  R  L  N  Y  A  C  M  H  F  F  F  P  V  Q  H  W  L  L  I  L  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90453" stop="90828"/>
                    <exon start="91087" stop="91320"/>
                    <exon start="92445" stop="92836"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIKKSTTLLTLFLFLFLKFLIINGHGGADDDDEHDSNGDTNTNLRAKGLILVKIYCLIILFVTTFVGGVSPYFYRWNEGFLLLGTQFAGGVFLGTSLMHFLSDSATTFGVLTEKEYPFAFMLASAGYLLTMFSDCIIMFVTKGGVNESSESKVEVDEEGRSTNIDEGHGTNPFLKTTSLGDTILLILALCFHSIFEGIAVGVSASKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTCAYSFAFAISSPIGVGIGIAIDATSEGRTADWTYAISMAIACGVFIYVAINHLIAKGFKPQNKCYFDTQFFKFVAVLLGVGVIAVVMIWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 12960 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2160 bytes was the average size of a spliced alignment
$ 10392 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2078 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:15:48
-->
