<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:52:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365266" ref_strand="+" ref_description="SGN-E365266 [cLPT-16-I7]">
      <seq>ttcgccttctctgaagttcaaatttcaaattccaaaacctagaaattgggcatggatgaacaagtacagctcaattcgatgtgccgggaaagtcaatcgatggtcccttgatggcatgaatgcccttgtcactggtggtactagaggcattgggcatgcaatagtggaggaattgtgtggactgggagccactgtgcatacgtgtgcccggaatgaagatgagcttggaacatgtttgaggagctggaaagatgagggctttacagtttctggttccttatgtgatgtgtcttctcaagttgatcgccaaaacttaatggaggttgtttcgtctacattcaatgggaagctcgacattcttataaacaacgcggggaccaatattcgcaaagctatggtggattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4473" stop="1153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4173" g_stop="4021" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4020" i_stop="2455" i_length="1566">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2454" g_stop="2247" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="361" r_length="208" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2246" i_stop="1501" i_length="746">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1500" g_stop="1453" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="409" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E365266" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4173" e_stop="4021"/>
          <exon e_start="2454" e_stop="2247"/>
          <exon e_start="1500" e_stop="1453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCTTCTGTGAAGTTCAAATTTCAAATTCCAAAACCTAGAAATTGGTCATGGATGAACAAGTACAGCTCAATCCGATGTGCCGGAAAAGTCAATCGATGGTCCCTTGATGGCATGAATGCCCTTGTCACTGGTGGTACTAGAGGCATTGGGTCCGTTTTCACTTATCCCTTTTCATTTACTTGTGCTTTTTTTTAGGATACTATATCTTTATAGCCATGTGATATAAAGAAATAACGATTCATATAGCCGATTCAAAATTGTTTGGGATTGAGGTGTAGATATTGTTATTATTGTTGTTGTATTTCTTAATATCCATTTGATATGAGCTTAAATGAAGAAATGGAGATTTAATACAGCTGGATCCAAATTGTTTGGGACTATCTTTATATCCATGGTATTTGAGCTTAAATGAAGATATGAGGATTCATATAGTCAATTTCAACTAGTTGTTGTCATTATATATCTTTATATGCATGATATTTGAGCTTAAATAAAGAAATGAGGATGCACATAGCTGATTCCAAATTGTTTGGGACTGAGGTGTAGTTGTCGTTATTATTGATGTGGTATATCTTCATATCCACGATATTTGAGCTTAAATGAAGATATGAGGATTCATATAGGCAATTTCAACTTGTTTGAAATTGAGGATTAGTGGTTGTAATTGTCATTGTATATCTTTATATCCATGGGATTTGAGCTTAAATAAAGAAATGAGGATTCACTTAGCTGATTCGAAAACTTTTAGGACTTAGGTGTAGTTTTTGTTATTGTCATTGTATATCCACCGGATATGAATTTAAATGAAGAAATGTGGATTCATATAGCCAATTTCAATTTGTTTAAGATTGAGATGTAGTTGTTTTTATTGTCGTTGTATATCTTGATATTCATGGGATATGATATTAAATGAAGAAATGAGGATTCAGTATAGCTGATAACAACTTGTTTGGGACTGAGATGTAGTTGTTGTCATTGTATATCTTTATATCCATGGGGCCTAAATGAAAAAATGGAGATTCATATAGTGGCTATTCCAACTTGTTTGAGACTGAGGCATAATTGTTGTTATTATCCTTGTATATAATCTTATATCCATTCACATATTAATTGAGTTTTTACATAATTACTGTAGAATGTTGCTTGCTTTGTTTTGAGCCTTATAATTTCATTTACTATGGGTAGTTATACCATTACTTTAATGTACAACAACAACATAAACAGTGTTATCTCAAAAAGTGGGTTTGAAGTGGGTAGGTGTACATAGACCTTACCGTTACCTAGTAATTTAAATACATAAATGTGACTTGTAATATCCTTTTAAACTCATTTTTTTTCAGTTATGACTTCTATTGTAGAAGATGTGACAGAGTAGTTTTTTTGGAATGATCTTGTAAGTAGTATTCACATTTCAGATTGAGGATACATGTTCGATTCTATTGTAAATTTTTTGAGGTGGAGTGGCTTTTGTGTAGTTTCTATAATATACATTTTATTTCAAGACAACCAAGGATTTCATGTACATTTCACATGATGAAGTTATATGCTTTGATCTTGTACTCCGAATCATCATTTGTTTTGAGACAGAAGTAATAACCAATATAGCCACAAGCCCAGTGCTTTTTTTTTTTTTTTAATTTTTAAAATCTAGTTTTTTGAAAATCTGAGTATAACTACGCATTTGTATTTGATAATGTGAATTGTTGTATAATTAGGCATGCGATAGTGGAGGAATTGTGTGGACTGGGAGCCACCGTGCATACGTGTGCCCGTAATGAAGATGAGCTTGAAATTTGTTTGAGGAGCTGGAAAGATGAGGGCTTTACAGTTTCTGGTTCCTTATGTGATGTGTCTTCTCAAGTTGATCGCCAAAAGTTAATGGAGGTTGTTTCGTCTACATTCAATGGGAAGCTCGACATTCTTGTAGGTATCTTTCTTTTTGATTGTTTATTCTCGTAGGTATCTTATGAGCTTAAGCACTTCTTAAAAGCTTTATATTTCAATGATATCTCTGTGGAGGACTTGGAGGCTAAGGAAAAGTTTTTCTTTTAAAATTATGACTGTCTTGAGCCTAATGGATATCATATAATCGACCTCAACCAGTTGGAACAAATAGATGATTTATGGAAAGTTTTTTTATCTTCCACAAAATGATTTTGTCTCATAGATGTTTCTAGAAAGCTTACAGATAACTATCCTTTACCACCAAGAAATCCTAGAGGCCCAATGGTGTGCGGTTCAAATTTCTTTGGATAATTATTCCAGATTAGCACCAGTGTATGTATGACTGTTGCCGGTGCATATAGAACTCATATATCAACATTAGATTGATAATTGGGTTAATTTGCAACAGATGCAGCTGAATTGTTTTTCAGTGTTGAACCTAGAAATAATTTGGCAAGCTGGCATTTCTCCAGCAGCCTATAAGAAAAAACTAATTGAATAGGAGGTTTTGTGGTATTGGGATCATTGTTGGATAATACATTGCATCATATATCTCTTTTCTCCTCAAGTTATACATGATGTCGAATTAACTAATCATTCATAATGTTGGACCTGGCACGTCAGTGTTAAAATAAATATCTTTGACGTATGATGCATCTAGCTTCATTGGATGGATTGCATGCACTAATAGATGAACTAATTGGCTTTCTTTCATTGCTCAGTAGATAAACAACGTGGGGACCAATATTCGCAAAGCTATGGTGGATTTTACT</genome_strand>
        <mrna_strand>TTCGCCTTCTCTGAAGTTCAAATTTCAAATTCCAAAACCTAGAAATTGGGCATGGATGAACAAGTACAGCTCAATTCGATGTGCCGGGAAAGTCAATCGATGGTCCCTTGATGGCATGAATGCCCTTGTCACTGGTGGTACTAGAGGCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATAGTGGAGGAATTGTGTGGACTGGGAGCCACTGTGCATACGTGTGCCCGGAATGAAGATGAGCTTGGAACATGTTTGAGGAGCTGGAAAGATGAGGGCTTTACAGTTTCTGGTTCCTTATGTGATGTGTCTTCTCAAGTTGATCGCCAAAACTTAATGGAGGTTGTTTCGTCTACATTCAATGGGAAGCTCGACATTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAACGCGGGGACCAATATTCGCAAAGCTATGGTGGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203097" ref_strand="+" ref_description="SGN-E203097 [cLEB-3-J11](-)">
      <seq>tttcatttgaaaaactcagctcacagctcaaatcggctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagcctaattatgaggttacaaacaatggtttaactgaggctgagtgagaaagcatgtaaatccctgcacattttctgtggatcttagtgtatatttgcctcaaatgcaacattcaggcacttgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8124" stop="7073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7824" g_stop="7374" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="468"/>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E203097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7824" e_stop="7374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</genome_strand>
        <mrna_strand>TTTCATTTGAAAAACTCAGCTCACAGCTCAAATCGGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290882" ref_strand="+" ref_description="SGN-E290882 [cLET-10-J7]">
      <seq>gcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagcctaattatgaggttacaaacaatggtttaactgaggctgagtgagaaagcatgtaaatccctgcacattttctgtggatcttagtgtatatttgcctcaaatgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8212" stop="7089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7912" g_stop="7384" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E290882" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7912" e_stop="7384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAG</genome_strand>
        <mrna_strand>GCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727216" ref_strand="+" ref_description="SGN-E727216 [LA14AC08]">
      <seq>ccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagccctattatgaggttacaaacaatgggttaactgaagctgagtgagaaaacatgtaaatccctgcacattttctgtggaatcttagtgtatatttgcctccaatggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9617" stop="7089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9317" g_stop="9165" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="222" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="281" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8069" g_stop="7395" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="958" r_length="677" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="962" polyA_stop="972"/>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E727216" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9317" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGG-AAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGG-ATCTTAGTGTATATTTGCCTCAAAT</genome_strand>
        <mrna_strand>CCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCCTATTATGAGGTTACAAACAATGGGTTAACTGAAGCTGAGTGAGAAAACATGTAAATCCCTGCACATTTTCTGTGGAATCTTAGTGTATATTTGCCTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746251" ref_strand="-" ref_description="SGN-E746251 [GI|47104803]">
      <seq>ttttttttttttttttttttcatatattttttttaaaaaaaaaaacacaaaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttccaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttgctgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgattgcaaaagcaataggaaatgctagcaaagttgtggttactattggtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggcgatagtctatgatgaatcttctccagtaggctcaacatacaatgtgctcgatggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtagatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccaccaaagacagtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagctcgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactactccaaggaaaccatctgcttcgaaaacgaacaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagcctaattatgaggttaaaacaatggtttaactgaggctgagtaagaaagcatgtaaatccctgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11538" stop="7130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11238" g_stop="10959" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="297" r_length="280" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="530" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9165" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="983" r_length="453" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="984" r_stop="1052" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1053" r_stop="1111" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8069" g_stop="7445" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1735" r_length="624" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1748" polyA_stop="1761"/>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E746251" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1719</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746251" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11238" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATATATTTTTTTTAAAAAAAAAAACAC-AA-TTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCAT</genome_strand>
        <mrna_strand>TTTCATATATTTTTTTTAAAAAAAAAAACACAAAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTC--CAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGCTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATTGCAAAAGCAATAGGAAATGCTAGCAAAGTTGTGGTTACTATTGGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCGATAGTCTATGATGAATCTTCTCCAGTAGGCTCAACATACAATGTGCTCGATGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTAGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCACCAAAGACAGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTCGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTACTCCAAGGAAACCATCTGCTTCGAAAACGAACAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTA-AAACAATGGTTTAACTGAGGCTGAGTAAGAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296399" ref_strand="+" ref_description="SGN-E296399 [cLET-19-B4]">
      <seq>tttagtacaggattttcatttgaaaaactcatctctcagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8137" stop="7239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7837" g_stop="7539" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E296399" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7837" e_stop="7539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</genome_strand>
        <mrna_strand>TTTAGTACAGGATTTTCATTTGAAAAACTCATCTCTCAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730986" ref_strand="+" ref_description="SGN-E730986 [LA25DC05]">
      <seq>cgcttcagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacagaaaccatctatgttgatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9691" stop="7252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9393" g_stop="9165" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="298" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="357" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8069" g_stop="7552" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="874" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E730986" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9393" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACT</genome_strand>
        <mrna_strand>CGCTTCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAAC-AGAAACCATCTATGTTGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726228" ref_strand="+" ref_description="SGN-E726228 [LA11AH01]">
      <seq>aacgcctgaatgcagttgcatcatcatttcaagatgcagaatcgatcgcaaaggcaatcggaaatgctagcaaagttgtggttactattagtaagggagaggacggtcctacgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctcaacatacaatgtgctcgacggaattacgtcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9895" stop="7437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9595" g_stop="9165" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="500" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="559" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8069" g_stop="7737" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="892" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E726228" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9595" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGG</genome_strand>
        <mrna_strand>AACGCCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATCGCAAAGGCAATCGGAAATGCTAGCAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTACGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCAACATACAATGTGCTCGACGGAATTACGTCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725786" ref_strand="+" ref_description="SGN-E725786 [LA05CG03]">
      <seq>ataaaaaccagataactgacgatttgtggggtgggagccatacaatatcgtcgtttcagggtgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctnactagacaagcaaaagactntagtacaggattttcatttgaaaaactcagctcacagctcatatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9525" stop="7447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9257" g_stop="9165" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="161" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="220" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8069" g_stop="7747" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="543" r_length="323" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E725786" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9257" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCA-GCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCT-ACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTA</genome_strand>
        <mrna_strand>ATAAAAACCAGA-TAACTGACGATTTGTGGGGTGGGAGC-CATACAATATCGTCGTTTCAGGGTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTNACTAGAC-AAGCAAAAGACTNTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCATATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727791" ref_strand="+" ref_description="SGN-E727791 [LA15DA04]">
      <seq>caccacaacagatgctgtacaagttatccaagcagcacaattagctggcgattggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatatcatagtttctgcagaagatagtatagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcacaaaataaggttgtcgaagtctttgctgatccatcaacaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcacaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaatcttgaaaagaaagaaacaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtaatcaccttccgtctcttctgttgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9774" stop="7559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9474" g_stop="9165" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="380" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="439" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8069" g_stop="7859" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="650" r_length="211" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E727791" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9474" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCG-TTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGT</genome_strand>
        <mrna_strand>CACCACAACAGATGCTGTACAAGTTATCCAAGCAGCACAATTAGCTGGCGATTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATATCATAGTTTCTGCAGAAGATAGTATAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCACAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAACACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCACAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAATCTTGAAAAGAAAGAAACAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTAATCACCTTCCGTCTCTTCTGTTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730013" ref_strand="+" ref_description="SGN-E730013 [LA22DB06]">
      <seq>agttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtaatgtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10319" stop="7575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10019" g_stop="9928" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9617" g_stop="9160" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="550" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9159" i_stop="8996" i_length="164">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="619" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="678" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8069" g_stop="7875" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="873" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E730013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10019" e_stop="9928"/>
          <exon e_start="9617" e_stop="9160"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGT</genome_strand>
        <mrna_strand>AGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAAT....................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367077" ref_strand="+" ref_description="SGN-E367077 [cLPT-5-C6]">
      <seq>tcgacggaattaccttattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtagatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9664" stop="7580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9364" g_stop="9165" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8995" g_stop="8927" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="269" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258">
            <donor d_prob="0.368" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8668" g_stop="8610" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="328" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8069" g_stop="7880" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="518" r_length="190" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E367077" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9364" e_stop="9165"/>
          <exon e_start="8995" e_stop="8927"/>
          <exon e_start="8668" e_stop="8610"/>
          <exon e_start="8069" e_stop="7880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCT</genome_strand>
        <mrna_strand>TCGACGGAATTACCTTATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTAGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725526" ref_strand="+" ref_description="SGN-E725526 [LA03DF08]">
      <seq>ggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggatactattagtaagggagaggacggtactgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatgtgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaatctatacactcataaaaaccagattaactgacgatgtctgccctgagagctcatacaagatcgtcgtttcagctgaaggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10284" stop="8885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9984" g_stop="9928" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9617" g_stop="9185" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="490" r_length="433" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E725526" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9984" e_stop="9928"/>
          <exon e_start="9617" e_stop="9185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTG</genome_strand>
        <mrna_strand>GGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGATACTATTAGTAAGGGAGAGGACGGTACTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATGTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAATCTATACACTCATAAAAACCAGATTAACTGACGATGTCTGCCCTGAGAGCTCATACAAGATCGTCGTTTCAGCTGAAGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727913" ref_strand="+" ref_description="SGN-E727913 [LA16AE06]">
      <seq>ctacatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaacggttgacgatagcagagtttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11484" stop="8993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11184" g_stop="10959" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="459" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9293" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="784" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E727913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11184" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGC</genome_strand>
        <mrna_strand>CTACATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACGGTTGACGATAGCAGAGTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731810" ref_strand="+" ref_description="SGN-E731810 [LA28BA06]">
      <seq>caatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcaaagctggagtttctgaccttggtgctgcacaaaagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11541" stop="9011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11241" g_stop="10959" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="516" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9311" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="823" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E731810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11241" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGA</genome_strand>
        <mrna_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAAAGCTGGAGTTTCTGACCTTGGTGCTGCACAAAAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202828" ref_strand="+" ref_description="SGN-E202828 [cLEB-1-E6]">
      <seq>agtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10282" stop="9013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9982" g_stop="9928" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9617" g_stop="9313" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="360" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E202828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9982" e_stop="9928"/>
          <exon e_start="9617" e_stop="9313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT</genome_strand>
        <mrna_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727027" ref_strand="+" ref_description="SGN-E727027 [LA13CB01]">
      <seq>caatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaaaaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcaaagctggagtttctgaccttggtgctgcacaaaagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcaaaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11541" stop="9019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11241" g_stop="10959" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="516" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9319" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="815" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E727027" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11241" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCA</genome_strand>
        <mrna_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAAAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAAAGCTGGAGTTTCTGACCTTGGTGCTGCACAAAAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAAAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325839" ref_strand="+" ref_description="SGN-E325839 [cTOC-12-H13]">
      <seq>tgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10445" stop="9035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10145" g_stop="9928" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9617" g_stop="9335" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="501" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E325839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10145" e_stop="9928"/>
          <exon e_start="9617" e_stop="9335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATC</genome_strand>
        <mrna_strand>TGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281302" ref_strand="-" ref_description="SGN-E281302 [cLEL-1-D17](-)">
      <seq>agtttctgaccttggtgctgcacaagagctatctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtccgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10282" stop="9042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9982" g_stop="9928" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9617" g_stop="9342" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="331" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E281302" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281302" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9982" e_stop="9928"/>
          <exon e_start="9617" e_stop="9342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTC</genome_strand>
        <mrna_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTATCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCCGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203096" ref_strand="+" ref_description="SGN-E203096 [cLEB-3-J11]">
      <seq>gcacgagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11363" stop="9045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11066" g_stop="10959" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="341" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9345" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="614" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E203096" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11066" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTC</genome_strand>
        <mrna_strand>GCACGAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731107" ref_strand="+" ref_description="SGN-E731107 [LA26AF10]">
      <seq>atttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcgcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggggctgcacaaaagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11539" stop="9088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11239" g_stop="10959" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10124" i_length="835">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10123" g_stop="9928" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="477" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9388" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="707" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E731107" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11239" e_stop="10959"/>
          <exon e_start="10123" e_stop="9928"/>
          <exon e_start="9617" e_stop="9388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCC</genome_strand>
        <mrna_strand>ATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGGGCTGCACAAAAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310470" ref_strand="+" ref_description="SGN-E310470 [cTOA-9-O13]">
      <seq>ttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11402" stop="9098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11102" g_stop="10959" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="377" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9398" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="597" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E310470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11102" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATG</genome_strand>
        <mrna_strand>TTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725634" ref_strand="+" ref_description="SGN-E725634 [LA04BF01]">
      <seq>taaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaaatcgattgcaaggctatcggaaatgctaacaagttgtggttactatttagtagggagaggacgggtctgcgactngagtcacccacacagatgctgtacagtatagagcagcacattagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11431" stop="9128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11131" g_stop="10959" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="406" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9428" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="591" r_length="185" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E725634" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11131" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAG-AATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTG</genome_strand>
        <mrna_strand>TAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAAATCGATTGC-AAGGCTATCGGAAATGCTAAC-AAGTTGTGGTTACTATTTAGTAGGGAGAGGACGGGTCTGCGACTNGAGTCACCCACACAGATGCTGTAC-AG-TATAG-AGCAGCAC-ATTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285596" ref_strand="+" ref_description="SGN-E285596 [cLES-5-A24]">
      <seq>ccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11278" stop="9159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10978" g_stop="10959" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="253" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9459" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="412" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E285596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10978" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCT</genome_strand>
        <mrna_strand>CCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284451" ref_strand="+" ref_description="SGN-E284451 [cLER-16-B4]">
      <seq>agatatacaatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11548" stop="9204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11248" g_stop="10959" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="523" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9504" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="637" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E284451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11248" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGT</genome_strand>
        <mrna_strand>AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293193" ref_strand="+" ref_description="SGN-E293193 [cLET-12-I23]">
      <seq>tacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11401" stop="9209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11101" g_stop="10959" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="376" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9509" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="485" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E293193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11101" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTA</genome_strand>
        <mrna_strand>TACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288958" ref_strand="+" ref_description="SGN-E288958 [cLES-17-M4]">
      <seq>ttcatctgctatttctttcaaaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11463" stop="9228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11163" g_stop="10959" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="440" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9528" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="530" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E288958" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11163" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTGCTATTTCTTTC--AAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCT</genome_strand>
        <mrna_strand>TTCATCTGCTATTTCTTTCAAAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348094" ref_strand="+" ref_description="SGN-E348094 [cTOF-31-D24]">
      <seq>acaatttcatatattttttttaaaaaaaaaaaacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggntgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtaaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11542" stop="9231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11242" g_stop="10959" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="517" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9531" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="604" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E348094" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11242" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGG-TGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAAT</genome_strand>
        <mrna_strand>ACAATTTCATATATTTTTTTTAAAAAAAAAAA-ACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGNTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTAAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282426" ref_strand="+" ref_description="SGN-E282426 [cLER-18-H4]">
      <seq>tcaaattcaatattcctttcaacttcacctcatccaattattatcattcaaaaatccaagattcattgattctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgacttttggaaggcaaagggcaaaggatcctggaacggcgtttgttgctggtgcaactgggcaagctggtattcgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11397" stop="9268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11097" g_stop="10959" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9568" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="423" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E282426" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11097" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCATTTCTCCTTTCAACTACACCTCATCCAA-GATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</genome_strand>
        <mrna_strand>TCAAATTCAATATTCCTTTCAACTTCACCTCATCCAATTATTATCATTCAAAAATCCAAGATTCATTGATTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGACTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGCGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATTCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313689" ref_strand="+" ref_description="SGN-E313689 [cTOA-12-P8]">
      <seq>tcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11397" stop="9268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11097" g_stop="10959" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="9928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="372" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9617" g_stop="9568" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="422" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E313689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11097" e_stop="10959"/>
          <exon e_start="10160" e_stop="9928"/>
          <exon e_start="9617" e_stop="9568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</genome_strand>
        <mrna_strand>TCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725934" ref_strand="+" ref_description="SGN-E725934 [LA08DB07]">
      <seq>cgagactagttccaatttcatatattgtttttaaaagagagaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcattgctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattggcttttggaaggcaaagggcaaaggatcctggaacggtgtttgatgctggtgcaactgggcaagctggtatccgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11550" stop="9724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11254" g_stop="10959" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="10024" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="432" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E725934" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11254" e_stop="10959"/>
          <exon e_start="10160" e_stop="10024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATT</genome_strand>
        <mrna_strand>CGAGAC-TAGTTCCAATTTCATATATTGTTTTTAAAAGAGAGAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTGCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGGCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGATGCTGGTGCAACTGGGCAAGCTGGTATCCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244213" ref_strand="+" ref_description="SGN-E244213 [cLEF-37-A15]">
      <seq>aaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11495" stop="9739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11195" g_stop="10959" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="10039" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="359" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E244213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11195" e_stop="10959"/>
          <exon e_start="10160" e_stop="10039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAA</genome_strand>
        <mrna_strand>AAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313592" ref_strand="+" ref_description="SGN-E313592 [cTOA-12-P10]">
      <seq>aaaaatctggacaaaatcaagaaactacaaccacttctggcaaccccttcaactttgatctcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11321" stop="9763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11021" g_stop="10959" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10160" g_stop="10063" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="161" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E313592" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11021" e_stop="10959"/>
          <exon e_start="10160" e_stop="10063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTG</genome_strand>
        <mrna_strand>AAAAATCTGGACAAAATCAAGAAACTACAACCACTTCTGGCAACCCCTTCAACTTTGATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349060" ref_strand="+" ref_description="SGN-E349060 [cTOS-2-C12]">
      <seq>tgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaaaggaagataaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgccttttgttggagagttgatgttttaggggaaggtcagaattttattgtatggtatttcgacaattttatttcttttatggccaagtatattctacttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30033" stop="27104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29733" g_stop="29650" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28233" g_stop="28059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="259" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27810" g_stop="27397" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="673" r_length="414" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E349060" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29733" e_stop="29650"/>
          <exon e_start="28233" e_stop="28059"/>
          <exon e_start="27810" e_stop="27397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCATCTCAAA</genome_strand>
        <mrna_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389508" ref_strand="+" ref_description="SGN-E389508 [TUS-4-D4](-)">
      <seq>agaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaaaggaagataaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgccttttgttggagagttgatgttgtaaaggaaggtcagaattttattgtatggtatttcgacaattttatttcttttatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28418" stop="27124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28118" g_stop="28059" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27810" g_stop="27422" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="449" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E389508" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28118" e_stop="28059"/>
          <exon e_start="27810" e_stop="27422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGC</genome_strand>
        <mrna_strand>AGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTGTAAAGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550415" ref_strand="+" ref_description="SGN-E550415 [TUS-5-D4](-)">
      <seq>cagttgtgcattgtgttttcacatctttcttctttttatccaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaaaggaagataaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgccttttgttggagagttgatgttttaggggaaggtcagaattttattgtatggtatttcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28576" stop="27142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28276" g_stop="28059" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27810" g_stop="27442" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="587" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E550415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28276" e_stop="28059"/>
          <exon e_start="27810" e_stop="27442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGAC</genome_strand>
        <mrna_strand>CAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349096" ref_strand="+" ref_description="SGN-E349096 [cTOS-2-D13]">
      <seq>tgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaagctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcaacaacgcaagctgatcatgtcgagaattaaagttcacttgaatgctctgaataaatatacttacggaaagcatattgtctcccgtgttgaaaagctagatgctgctggggaaaggaggattgctgcgcaatccctaagtactgcttactcatgtaggaaaagaaagttgtgcagctaactgatgctagtttgagctacctatcttccacatctgcgttgtgttatttgcaaataaaagttgtcgcatgtactataggagatgtacattgtgtatctaaaaaaacataaatatcagcgtgtgctgaagctcagatgtcaaatattcgagatggctgagcatatggaatttgatgtgtaaaaaataaggaagattaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30033" stop="27200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29733" g_stop="29650" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28233" g_stop="28059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="259" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27810" g_stop="27500" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="571" r_length="312" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E349096" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29733" e_stop="29650"/>
          <exon e_start="28233" e_stop="28059"/>
          <exon e_start="27810" e_stop="27500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAG-GTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTT</genome_strand>
        <mrna_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAACAACGCAAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAATAAATATACTTACGGAAAGCATATTGTCTCCCGTGTTGAAAAGCTAGATGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAATCCCTAAGTACTGCTTACTCATGTAGGAAAAGAAAGTTGTGCAGCTAACTGATGCTAGTTTGAGCTACCTATCTTCCACATCTGCGTTGTGTTATTTGCAAATAAAAGTTGTCGCATGTACTATAGGAGATGTACATTGTGTATCTAAAAAAACATAAATATCAGCGTGTGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGAGCATATGGAATTTGATGTGTAAAAAATAAGGAAGATTAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212554" ref_strand="+" ref_description="SGN-E212554 [cLEC-74-D15]">
      <seq>gaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31030" stop="27254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30730" g_stop="30671" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30670" i_stop="29845" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29844" g_stop="29650" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="255" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28233" g_stop="28059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="430" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27810" g_stop="27554" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="686" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E212554" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30730" e_stop="30671"/>
          <exon e_start="29844" e_stop="29650"/>
          <exon e_start="28233" e_stop="28059"/>
          <exon e_start="27810" e_stop="27554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGA</genome_strand>
        <mrna_strand>GAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGT-AAAAAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708609" ref_strand="+" ref_description="SGN-E708609 [FA36AH11]">
      <seq>gcgctgtgtacgagatcagaatggtaatcatgtcattcagaaatgtattgaatgcgtaccagaacttcatatccaatttatcgtctcaacattttttggacaagttattactctctcaacccatccatatggctgtcgagttatacagagagtattggaacactgtgacaatccagaaactcaaagtaaagtgatggaagaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttactgaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaaataaatatcaggtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31313" stop="27319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31013" g_stop="30866" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30865" i_stop="30782" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30781" g_stop="30671" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="259" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29845" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29844" g_stop="29650" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="454" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28233" g_stop="28059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="629" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27810" g_stop="27619" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="820" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E708609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31013" e_stop="30866"/>
          <exon e_start="30781" e_stop="30671"/>
          <exon e_start="29844" e_stop="29650"/>
          <exon e_start="28233" e_stop="28059"/>
          <exon e_start="27810" e_stop="27619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAGGTAGATAAGTGATGTTTCTTACCCATTTGTCATTGTAATTTACTTTGATATAGTACTAATATTCCTTGATCCTTGATCTTTCAGAGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCT</genome_strand>
        <mrna_strand>GCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAG....................................................................................AGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACTGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAA-ATAAATATCAGGTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378828" ref_strand="+" ref_description="SGN-E378828 [TUS-1-N20]">
      <seq>atgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtggtacggaggttctggaaacttgtagtgacagcnnacgcgcagactgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29969" stop="27415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29669" g_stop="29650" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28233" g_stop="28059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="196" r_length="176" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27810" g_stop="27715" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="292" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E378828" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29669" e_stop="29650"/>
          <exon e_start="28233" e_stop="28059"/>
          <exon e_start="27810" e_stop="27715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCA-ACGCG-AG-CTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTC</genome_strand>
        <mrna_strand>ATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTGGTAC-GGAGGTTCTGGAAACTTGTAGTGA-CAGCNNACGCGCAGACTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204681" ref_strand="+" ref_description="SGN-E204681 [cLEC-14-F21]">
      <seq>ttactctctcaacccatccatatggctgtcgagttatacagagagtattggaacactgtgacaatccagaaactcaaagtaaagtgatggaagaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtattacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31206" stop="27792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30906" g_stop="30866" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30865" i_stop="30782" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30781" g_stop="30671" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="152" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29845" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29844" g_stop="29650" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="347" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28233" g_stop="28092" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="489" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E204681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30906" e_stop="30866"/>
          <exon e_start="30781" e_stop="30671"/>
          <exon e_start="29844" e_stop="29650"/>
          <exon e_start="28233" e_stop="28092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAGGTAGATAAGTGATGTTTCTTACCCATTTGTCATTGTAATTTACTTTGATATAGTACTAATATTCCTTGATCCTTGATCTTTCAGAGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTG</genome_strand>
        <mrna_strand>TTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAG....................................................................................AGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTATTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379803" ref_strand="+" ref_description="SGN-E379803 [TUS-1-N20](-)">
      <seq>gggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30129" stop="27807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29829" g_stop="29650" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28233" g_stop="28107" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="307" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E379803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29829" e_stop="29650"/>
          <exon e_start="28233" e_stop="28107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTT</genome_strand>
        <mrna_strand>GGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389770" ref_strand="+" ref_description="SGN-E389770 [TUS-4-D4]">
      <seq>agtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattgaactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttagctataatttctaaacttctcttaaaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttgtattttgtttgtgctttttgacatcttgacatgtttggtcccattttaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggagcaagtggggtgggtgttcgcctggagtgttttctctatgtcaagataccccgagttttctatataattattttacctcaacaatatcatgctattactctttgcatctttgggaatagagtttatctaagaagtactaccacatgtacctatggttttgattttggtagcagttgtaacatataaacttttaaatagncttgtttctcttctctcttctctaattgaaatcagttgtgcattgtgttttcacatctttcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29258" stop="27942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28958" g_stop="28242" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E389770" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28958" e_stop="28242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTT</genome_strand>
        <mrna_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGNCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550164" ref_strand="+" ref_description="SGN-E550164 [TUS-5-D4]">
      <seq>agtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattgaactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttagctataatttctaaacttctcttaaaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttgtattttgtttgtgctttttgacatcttgacatgtttggtcccattttaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggagcaagtggggtgggtgttcgcctggagtgttttctctatgtcaagataccccgagttttctatataattattttacctcaacaatatcatgctattactctttgcatctttgggaataagttttatctaagaagtactaccacatgtacctatggttttgattttggtagcagttgtaacatataaacttttaaatagncttgtttctcttctctcttctctaatngaaatcagttgtgcattgtgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29258" stop="27958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28958" g_stop="28258" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E550164" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28958" e_stop="28258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTT</genome_strand>
        <mrna_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAAGTTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGNCTTGTTTCTCTTCTCTCTTCTCTAATNGAAATCAGTTGTGCATTGTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235530" ref_strand="+" ref_description="SGN-E235530 [cLED-11-J17]">
      <seq>gtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattgaactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttagctataatttctaaacttctcttaaaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttgtattttgtttgtgctttttgacatcttgacatgtttggtcccattttaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggagcaagtggggtgggtgttcgcctggagtgttttctctatgtcaagataccccgagttttctatataattattttacctcaacaatatcatgctattactctttgcatctttgggaatagagtttatctaagaagtactaccacatgtacctatggttttgattttggtagcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29257" stop="28033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28957" g_stop="28333" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E235530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28957" e_stop="28333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTT</genome_strand>
        <mrna_strand>GTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700489" ref_strand="+" ref_description="SGN-E700489 [FA13BB03]">
      <seq>cctatagattgctaaactaatgattgttgtcttttggtgggcctctattgagatacaaccctatcaagttctttacctctgtttatgttcctgttcctgttgagatgcatggcattgcagtctcagattaatcgctaaggttcccagctgttttaattttaggatgtagcttgaatgggacatcagtctcttaagtaaggttgaacttggaagaaaaaattggtataaccgatattttgtggcacttgtttttgaaaggcaagaagtggttgaagatgaagttaccaaacaatcattcatcaatcccgattcttctattattcagtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattggactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttggctataatttctaaacttctcttagaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttatattttgtttgtgctttttgacatcttgacatgtttggtcccatttaaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggaagcagtggggtgggtgttcgcccggagtgttttctctatgtcaagataccccgagttttctatataattattggacctcaacaatatcatgctataactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29581" stop="28108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29281" g_stop="28408" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E700489" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29281" e_stop="28408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTC</genome_strand>
        <mrna_strand>CCTATAGATTGCTAAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGTAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATCAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGGACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTGGCTATAATTTCTAAACTTCTCTTAGAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTATATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTAAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAAGCAGTGGGGTGGGTGTTCGCCCGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTGGACCTCAACAATATCATGCTATAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706091" ref_strand="+" ref_description="SGN-E706091 [FA28DH11]">
      <seq>ccttggacaggaactatatgggtaattcatatgtggacttgtttcagaaagcttatctcagtagtgtgctacctcagaaatctcaatatggggtcccattaaatagcaagactagcggttcaggtcatcctggctattatggaaattctgcatttggagttggtctatcatatcctgggagtcctttagcaagtccagtctctccagtaggacctggtagtcctatgaggcatagtgattataatatgagatttcctggtagaataagaaacatagctggaggtgtcatgggaccatatcacttggataacatggagaacagcgtcgcatcctccctactggaggagttcaaaagcaacaaggccaagtgttttgaactttcagaaattgcaggtcacgttgttgagttcagtgctgaccagtatgggagccgattcattcaacaaaaactcgaaactgcaaccactgaggaaaaaaacatggttttccaggaaattttcccccaagctcttactttgatgactgatgtctttgggaattatgtaatccagaagttttttgaacatggaatggcatctcagaggagagaattggctagcatactctttgggcatgttctaacgctgagccttcaaatgtatggttgtcgtgtgatacaaaaggcaatagaagtagttgacgtggaccagaaaattanaatggttgaggagcttgatggtcatgttatgcgctgtgtacgagatcagaatggtaatcatgtcattcagaaatgtattgaatgcgtaccagaacttcatatccaatttatcgtctcaacattttttggacaagttattactctctcaacccatccatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32432" stop="30581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32132" g_stop="31721" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31720" i_stop="31635" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31634" g_stop="31493" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="554" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31492" i_stop="31380" i_length="113">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31379" g_stop="31272" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="662" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31271" i_stop="31079" i_length="193">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31078" g_stop="30881" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="860" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E706091" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32132" e_stop="31721"/>
          <exon e_start="31634" e_stop="31493"/>
          <exon e_start="31379" e_stop="31272"/>
          <exon e_start="31078" e_stop="30881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGGACAGGAACTATATGGGTAATTCATATGTGGACTTGTTTCAGAAAGCTTATCTCAGTAGTGTGCTACCTCAGAAATCTCAATATGGGGTCCCATTAAATAGCAAGACTAGCGGTTCAGGTCATCCTGGCTATTATGGAAATTCTGCATTTGGAGTTGGTCTATCATATCCTGGGAGTCCTTTAGCAAGTCCAGTCTCTCCAGTAGGACCTGGTAGTCCTATGAGGCATAGTGATTATAATATGAGATTTCCTGGTAGAATAAGAAACATAGCTGGAGGTGTCATGGGACCATATCACTTGGATAACATGGAGAACAGCGTCGCATCCTCCCTACTGGAGGAGTTCAAAAGCAACAAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAGGTATGTATCATTAATTTTGTTCTACTTGGTCTTTACCTACTTAAACTAGCCTCACTTCTAAAACTATAAATATCACCTGTGATCAGTGCTGACCAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAACATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAATTATGTAATCCAGAAGGTATCTCTAACTTTGGTTGTTCTATGGAGTATATATTGATGTTGAGGTGCATGATCTCCAAGTCTGCTTTGTTTCTCTTTAAATGGGTTATAATGCATCTATTTCTCGTGCAGTTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGCATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAAAAGGTATGCCAAAGTGAATCTAGGAATGCTCATACATGCTCAAGTGTTATCTGCTAGATTAATCTTTTGTTTTGGTTTTTATTCTGATACACTAAAAGTTAGCACCAACCAGTGGGCTCTCTGGGCTGATTATCAGCTTCTTCTCAATAACATGAGTTATATTGAGATGAAAATTGTGGTATGGTTGACTCTGCAGGCAATAGAAGTAGTTGACGTGGACCAGAAAATTAAAATGGTTGAGGAGCTTGATGGTCATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGC</genome_strand>
        <mrna_strand>CCTTGGACAGGAACTATATGGGTAATTCATATGTGGACTTGTTTCAGAAAGCTTATCTCAGTAGTGTGCTACCTCAGAAATCTCAATATGGGGTCCCATTAAATAGCAAGACTAGCGGTTCAGGTCATCCTGGCTATTATGGAAATTCTGCATTTGGAGTTGGTCTATCATATCCTGGGAGTCCTTTAGCAAGTCCAGTCTCTCCAGTAGGACCTGGTAGTCCTATGAGGCATAGTGATTATAATATGAGATTTCCTGGTAGAATAAGAAACATAGCTGGAGGTGTCATGGGACCATATCACTTGGATAACATGGAGAACAGCGTCGCATCCTCCCTACTGGAGGAGTTCAAAAGCAACAAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAG......................................................................................TGCTGACCAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAACATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAATTATGTAATCCAGAAG.................................................................................................................TTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGCATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAAAAG.................................................................................................................................................................................................GCAATAGAAGTAGTTGACGTGGACCAGAAAATTANAATGGTTGAGGAGCTTGATGGTCATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738562" ref_strand="+" ref_description="SGN-E738562 [LC14AE12]">
      <seq>cagaatagtacgaagcagcatgatttcttgaagcaatccgaatccccccagtttaatgtggcttctaatgctcagtctgcgaaagtaccatattctgttgctgttactggctccagtagttcatacctcaaaggatccccaacgtcgggattgaatggtggaggtggcgtactgtctcagtatccccatttggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32940" stop="32144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32640" g_stop="32444" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E738562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32640" e_stop="32444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</genome_strand>
        <mrna_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739547" ref_strand="+" ref_description="SGN-E739547 [LC17DE09]">
      <seq>cagaatagtacgaagcagcatgatttcttgaagcaatccgaatccccccagtttaatgtggcttctaatgctcagtctgcgaaagtaccatattctgttgctgttactggctccagtagttcatacctcaaaggatccccaacgtcgggattgaatggtggaggtggcgtactgtctcagtatccccatttggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="-" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32940" stop="32144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32640" g_stop="32444" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="-" ref_id="SGN-E739547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32640" e_stop="32444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</genome_strand>
        <mrna_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258662" ref_strand="+" ref_description="SGN-E258662 [cLEG-50-K24]">
      <seq>gtttaaatataaaataattaattaacgatgaaatagtatttaccgctttactaacaggctcccacgcgtcttcgtgtttataaactctcttttttctcctttcttctttacctttcacgttcttcaacgctacccccattttcttctctctgtgctttttcttttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattggggcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54680" stop="55756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54979" g_stop="55456" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E258662" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54979" e_stop="55456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTC-TTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGG</genome_strand>
        <mrna_strand>GTTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGGCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255400" ref_strand="+" ref_description="SGN-E255400 [cLEG-30-P5]">
      <seq>ttaaatataaaataattaattaacgatgaaatagtatttaccgctttactaacaggctcccacgcgtcttcgtgtttataaactctcttttttctcctttcttctttacctttcacgttcttcaacgctacccccattttcttctctctgtgctttttcttttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54681" stop="55898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54981" g_stop="55598" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E255400" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54981" e_stop="55598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTC-TTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGA</genome_strand>
        <mrna_strand>TTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202184" ref_strand="+" ref_description="SGN-E202184 [cLEC-7-L13]">
      <seq>cgctacccccattttcttctctctgtgctttttctttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54806" stop="55765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55106" g_stop="55465" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E202184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55106" e_stop="55465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGAC</genome_strand>
        <mrna_strand>CGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271916" ref_strand="+" ref_description="SGN-E271916 [cLEM-8-P6]">
      <seq>cattttcttctctctgtgctttttctttttttctcttaagaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaagtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcaactgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaagtctcaagccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54815" stop="56015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55115" g_stop="55715" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E271916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55115" e_stop="55715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCG</genome_strand>
        <mrna_strand>CATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAAGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAAGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAACTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAAGTCTCAAGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341510" ref_strand="+" ref_description="SGN-E341510 [cTOE-23-P4]">
      <seq>cttctctctgtgctttttctttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaagccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54821" stop="55990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55121" g_stop="55690" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E341510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55121" e_stop="55690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCAC</genome_strand>
        <mrna_strand>CTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAAGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726105" ref_strand="+" ref_description="SGN-E726105 [LA10BD03]">
      <seq>cttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggntacttgatcagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54859" stop="55987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55159" g_stop="55687" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E726105" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55159" e_stop="55687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAG</genome_strand>
        <mrna_strand>CTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGNTACTTGATCAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303892" ref_strand="+" ref_description="SGN-E303892 [cLEX-4-O5]">
      <seq>ttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcaattggaaacgatgttgtttgtcctcactgagatagtggatttatagaagttgctgacggaaacattgggtcgccagaatctctccggaggtttcccatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54864" stop="55720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55164" g_stop="55420" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E303892" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55164" e_stop="55420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGA</genome_strand>
        <mrna_strand>TTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAATTGGAAACGATGTTGTTTGTCCTCACTGAGATAGTGGATTTATAGAAGTTGCTGACGGAAACATTGGGTCGCCAGAATCTCTCCGGAGGTTTCCCATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334125" ref_strand="+" ref_description="SGN-E334125 [cTOD-21-K9]">
      <seq>tttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgcccctgtaacacatctaccattccgattgtatccctccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattacaacgggaatcactgaaactacaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54930" stop="56267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55230" g_stop="55967" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E334125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55230" e_stop="55967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATG-CCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTC</genome_strand>
        <mrna_strand>TTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCCTGT-AACACATCTACCATTCCGATTGTATCCCTCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACAACGGGAATC-ACTGAAACTACAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336061" ref_strand="+" ref_description="SGN-E336061 [cTOE-12-K11]">
      <seq>gcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcacgtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54960" stop="56245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55260" g_stop="55945" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E336061" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55260" e_stop="55945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGG</genome_strand>
        <mrna_strand>GCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCACGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297776" ref_strand="+" ref_description="SGN-E297776 [cLET-38-I14]">
      <seq>gtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54993" stop="56073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55293" g_stop="55773" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E297776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55293" e_stop="55773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATA</genome_strand>
        <mrna_strand>GTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258359" ref_strand="+" ref_description="SGN-E258359 [cLEG-49-L24]">
      <seq>ttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccggggagtgggttcgccgtaggaagattttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55035" stop="56362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55335" g_stop="56062" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E258359" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55335" e_stop="56062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCG</genome_strand>
        <mrna_strand>TTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGGAGTGGGTTCGCCGTAGGAAGATTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210905" ref_strand="+" ref_description="SGN-E210905 [cLEC-69-E4]">
      <seq>tttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55057" stop="56086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55357" g_stop="55786" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E210905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55357" e_stop="55786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACG</genome_strand>
        <mrna_strand>TTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707926" ref_strand="+" ref_description="SGN-E707926 [FA34BD10]">
      <seq>cgttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55157" stop="56617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55456" g_stop="56317" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E707926" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55456" e_stop="56317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTG</genome_strand>
        <mrna_strand>CGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205039" ref_strand="+" ref_description="SGN-E205039 [cLEC-16-N7]">
      <seq>gtaatctgtgtgatagatctccgtttaatccggttattgttctgcgtagtccatctgaagcaccgggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55175" stop="56285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55475" g_stop="55985" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E205039" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55475" e_stop="55985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACC</genome_strand>
        <mrna_strand>GTAATCTGTGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTGCGTAGTCCATCTGAAGCACCGGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340963" ref_strand="+" ref_description="SGN-E340963 [cTOF-5-B11]">
      <seq>ggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55181" stop="56729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55481" g_stop="55858" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55859" i_stop="56115" i_length="257">
            <donor d_prob="0.547" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56116" g_stop="56429" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="691" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E340963" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55481" e_stop="55858"/>
          <exon e_start="56116" e_stop="56429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATT</genome_strand>
        <mrna_strand>GGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGGAC-.................................................................................................................................................................................................................................................................GGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206896" ref_strand="+" ref_description="SGN-E206896 [cLEC-33-J8]">
      <seq>ttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55199" stop="56326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55499" g_stop="56026" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E206896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55499" e_stop="56026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGAC</genome_strand>
        <mrna_strand>TTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389716" ref_strand="+" ref_description="SGN-E389716 [TUS-4-A3]">
      <seq>cttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggnatttacaatggggtacctagaagaatagcttgggagatcagaagaaagcacacaggtcgaaatgggcacggaaatagccgaattttcacaacttcacatcatttttccggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55216" stop="56534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55516" g_stop="56234" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E389716" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55516" e_stop="56234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTG-GAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCG</genome_strand>
        <mrna_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGNATTTACAATGGGGTACCTAGAAGAATAGCTTGGGAGATC-AGAAGAAAGCACACAGGTCGAAATGGGCACGGAAATAGCCGAATTTTC-ACAACTTCACATCATTTTTCCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550068" ref_strand="+" ref_description="SGN-E550068 [TUS-5-A3]">
      <seq>cttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtacgaagattttccggtggaagaagaggagctgaagaaaagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaatttcaacaacttcacatcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55216" stop="56528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55516" g_stop="56228" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E550068" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55516" e_stop="56228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTT</genome_strand>
        <mrna_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTACGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAAGAAAAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAA-TTTCAACAACTTCACATCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235290" ref_strand="+" ref_description="SGN-E235290 [cLED-11-O15]">
      <seq>tgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtccatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgattgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatataccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccatctgactcaactgaaactacaaactccgacaacatttctagacccagaaacgtagacgaggcaatgggattgacaatatggagacttccgggaggtggattcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttacagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagctacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttgtcaacatcgatctctatccatacattccagtagttcagaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55352" stop="56594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55652" g_stop="56294" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E235290" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55652" e_stop="56294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATC</genome_strand>
        <mrna_strand>TGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCCATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGATTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATATACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCATCTGACTCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGTAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGATTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTACAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCTACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTGTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367405" ref_strand="+" ref_description="SGN-E367405 [cLPT-7-F21]">
      <seq>acagatcgaggtgatcggttttggtcggccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcggccccgtttgccgacacgaattaccatcggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaagcaatgggattgacaatatggagacttccgggaggtgggttcgccgtacgaagattttccggtggaagaagaggagctgagagagaacttccagtagtgtatacagaaatggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55389" stop="56416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55689" g_stop="56116" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E367405" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55689" e_stop="56116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACG</genome_strand>
        <mrna_strand>ACAGATCGAGGTGATCGGTTTTGGTCGGCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGT-AACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCG-GCCCCGTTTGCCGACACGAATTACCATCGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAAGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTACGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAACTTCCAGTAGTGTATACAGAAATGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214348" ref_strand="+" ref_description="SGN-E214348 [cLEC-77-G17]">
      <seq>acggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55403" stop="56620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55703" g_stop="56320" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E214348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55703" e_stop="56320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTAT</genome_strand>
        <mrna_strand>ACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346740" ref_strand="+" ref_description="SGN-E346740 [cTOF-28-F24]">
      <seq>cggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggagggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatangcttggagatcaagaagaagcaacacagggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctaacnatcgatctctatccatacattccagtagttcagatcatcccgtttctggttctggatctgctgtattcaagagtcgnaagtgtatcttcaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55404" stop="56648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="56348" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E346740" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="56348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGA-GGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATA-GCTTGGAGATCAAGAAGAAGCAACACA-GGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCAT-CCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCG-AAGTGTATCTTCAAGCAC</genome_strand>
        <mrna_strand>CGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATANGCTTGGAGATCAAGAAGAAGCAACACAGGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTAACNATCGATCTCTATCCATACATTCCAGTAGTTCAG-ATCATCCCGTTTCTGGTTCTGGATCTGCTGTATTCAAGAGTCGNAAGTGTATCTTCAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204890" ref_strand="+" ref_description="SGN-E204890 [cLEC-14-F24]">
      <seq>agctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55521" stop="56484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55821" g_stop="56184" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E204890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55821" e_stop="56184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAAT</genome_strand>
        <mrna_strand>AGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237593" ref_strand="+" ref_description="SGN-E237593 [cLED-19-P14]">
      <seq>cgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttattaggcagtcgactagaaacagaagacgataacccccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55668" stop="56808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55968" g_stop="56508" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E237593" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55968" e_stop="56508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGAT</genome_strand>
        <mrna_strand>CGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATTAGGCAGTCGACTAGAAACAGAAGACGATAACCCCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303411" ref_strand="+" ref_description="SGN-E303411 [cLEX-2-D18]">
      <seq>aagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55694" stop="56920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56620" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E303411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGA</genome_strand>
        <mrna_strand>AAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235778" ref_strand="+" ref_description="SGN-E235778 [cLED-15-O19]">
      <seq>aagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55752" stop="56866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56052" g_stop="56566" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E235778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56052" e_stop="56566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATA</genome_strand>
        <mrna_strand>AAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230973" ref_strand="+" ref_description="SGN-E230973 [cLED-5-K7]">
      <seq>agattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55753" stop="56910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56053" g_stop="56610" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E230973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56053" e_stop="56610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCAC</genome_strand>
        <mrna_strand>AGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301410" ref_strand="+" ref_description="SGN-E301410 [cLEX-8-C8]">
      <seq>agaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55840" stop="56860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56140" g_stop="56560" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E301410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56140" e_stop="56560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAG</genome_strand>
        <mrna_strand>AGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379209" ref_strand="+" ref_description="SGN-E379209 [TUS-1-N16](-)">
      <seq>agatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagagcagtcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaagatgccattttgttgggaatatgtaaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgttgaatgagtagcagtaattataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55855" stop="57097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56155" g_stop="56797" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E379209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56155" e_stop="56797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAA</genome_strand>
        <mrna_strand>AGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATGAGTAGCAGTAATTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377359" ref_strand="+" ref_description="SGN-E377359 [TUS-21-I24]">
      <seq>aggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagagcagtcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaagatgccattttgttgggaatatgtaaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgttgaatttgtagcagtaattataagtaatagaaagaccattgtttttttttataaaaaaaaaaaaaaaaaaaaaaaagagggaaaaaaatacctcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56023" stop="57131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56323" g_stop="56827" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="530"/>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E377359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56323" e_stop="56827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</genome_strand>
        <mrna_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236510" ref_strand="+" ref_description="SGN-E236510 [cLED-13-C21]">
      <seq>aggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagaagcagcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaagatgccattttgttgggaatatgtaaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgttgaatttgtagcagtaattataagtaatagaaagaccattgttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56023" stop="57124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56323" g_stop="56824" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E236510" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56323" e_stop="56824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAG-AGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTT</genome_strand>
        <mrna_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAAGCAG-CGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389452" ref_strand="+" ref_description="SGN-E389452 [TUS-4-A3](-)">
      <seq>aagaagaagacaataatgtcgttttttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagagcagtcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaattttatcattttgttggcgataaataaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56252" stop="57074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56552" g_stop="56774" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E389452" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56552" e_stop="56774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAA-GATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGT</genome_strand>
        <mrna_strand>AAGAAGAAGACAATAATGTCGTTTTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAATTTTATCATTTTGTTGGCGATAAATAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233534" ref_strand="+" ref_description="SGN-E233534 [cLED-9-I4]">
      <seq>aaggagggatttcgaaagtgtacaaatgaacatactctttacataaaaagagaatgtgtaggggtcttaatggtgtgtttatatgtggatgacttaatttataccggaagtaatatgtctatgattaaaaactttaagaagtccatgatggttgagtttgacacgtcagatttgaggcatggtgcattatttccttggtttagaagtgaatcaatccgctgatggtatttttgtttctcaaaagaaatatgtgcaagatattctggacagattccagatgaaaaataacaacactgtgagcacaccaatggagaagggtccgaagctcgtcaaagaacctgaagggagaaaagtggacaacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68351" stop="69317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68651" g_stop="69017" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E233534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68651" e_stop="69017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTAGGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCTATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCATGGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCAAAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAGCACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAACATTTTA</genome_strand>
        <mrna_strand>AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTAGGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCTATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCATGGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCAAAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAGCACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379908" ref_strand="+" ref_description="SGN-E379908 [TUS-1-K2]">
      <seq>ttccataaaaaagtcaactactctgttaacactattcctgtttttgttcttgaaatttttaattatcaatggtcatggtggagctgatgatgatgatgaacatgattcaaatggagatacaaatacaaatttacgcgcgaaaggattgattcttgttaaaatttattgcttgatcatactctttgtaactacatttgttggtggcgtatcgccttatttctatcgatggaatgaggggtttctcttgttaggaactcaatttgctggtggtgttttcttagggacttcattgatgcattttttgagtgattctgctacaacttttggtgtacttacagaaaaagagtacccttttgccttcatgttggcttctgcaggttatcttctcactatgtttagtgattgcattattatgtttgtgacaaaggggggtgtaaatgaatcaagtgagtccaaagttgaagtggatgaagaaggaaggtcaactaatattgatgagggacatggaacaaatccatttctaaagacaacttcacttggggatacaatacttctcattcttgcattgtgtttccactctatttttgaaggcattgctgttggagtatcagcttcaaagggagaggcatggagaaacctatggacaatttcattgcacaaaatatttgcagccattgcaatgggaattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90152" stop="92825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90452" g_stop="90828" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90829" i_stop="91086" i_length="258">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91087" g_stop="91320" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="611" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92445" g_stop="92525" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="692" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E379908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90452" e_stop="90828"/>
          <exon e_start="91087" e_stop="91320"/>
          <exon e_start="92445" e_stop="92525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAGGTTAATTACCTATCGTAGCAGATAACCTATCTTATTAAATCTCGCTTTTTATAAATTTTTTAGGAGCTTTGATAGTTTGAAAATATCTTTAGACTACTGATGATGTATGTAACTTAAATTCTTATCAATTGTTATTGCATCATAACGCGTTCATGTTAAATCCTCCAAATGCAATACTACTAGAGGATCTGTCACACATCTGACAACATTATGAGGAACGCGCAAATCAAATAAAATGAGTAACTTTTTTTTTTGTAGGTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAGGTAAATAAACTATTGGGTATATATAATATTTTCTTTATTTATGTTGAGAGACTATCTCCGGGAGATTATATATAGATACAGACAGTATAAAGAAATAGATTATTTTAAGTGACCTAAGTTGATAGTGTTAAAAATCTACACACTATCAATAGTTCAATACACTATGTTAACCTAGAACATCTAGGGAATGTGTTACATGAGGACTAGAGGATGCTTGTTTTTAGTGAAAATAGAGTTTTACCTTCTTTAGTTTCATTTCATATTTGCTTTTGTAGAAAAACATTTACTCATTGTGATAATCCTAAATTAATAATACCATCAAGGGATACTATGCTTTCCTTCCGATATCCTTAACCAAATGTCTCGCATTTGAGCTATGGTAATAAAGAAAATATTTCAATATATATAGGGAATACTTTACTCTCCTTAGTATGCCTACATACCACGAATATGGATAGCTAGTCGGGTCAATACATAGGTCTCGGATAATTGCCCAAAAAAGGAGAATCGTCTTCAATAATGTGCTTTGGTGTAGGATATTTACTCTGAGTTTCTTATCATAAAATAAGTTATCATTTTCCTAAAAGGAAAACATAAAGTTTCCATATTTGTAGGAAATTGCTTAGGACTCTATAAATAGAGACATATTTGTTCTAACATAATTAACATTCACAATGTAGTCCTAGGAGCTTCGAGAGTTTTGGTTAGGAGAGAGAATTTGTGGGATACAAGTGATGCGTTATTACTTCCGTGAGCCTCTTTTTATTCCGAGTGAATTGTGTGAGGTTATTGCGTACTCTCGTATTTATAGTGGATTGTTCATCTCTTTTGTGGATGTAGGTCGATTGACCGAACCACCTTAGATCTTTGTGTCTTTTTGTATATTTCTCGTTTTGTCTTCTGACTTGTGGTCTTTCGAGGTTTGCTTTGTTAGGTTACACATGACACTTTAGTCCTAACACTTAAGTGGAGAAAAATCCCCTAATTGCCCTACAAAAACCCTAAAATTTTAGCTAAGAACTTTGTCACTTAATCCTTGCTAAATAAGATTATCAACATATTTTACTGTTTAGCTACAAAATTTATCCGTCGCTAATCCTCACATTCCTTGATGTAATTTTCAGCTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCAC</genome_strand>
        <mrna_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAG..................................................................................................................................................................................................................................................................GTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374812" ref_strand="+" ref_description="SGN-E374812 [TUS-14-N14]">
      <seq>ttccataaaaaagtcaactactctgttaacactattcctgtttttgttcttgaaatttttaattatcaatggtcatggtggagctgatgatgatgatgaacatgattcaaatggagatacaaatacaaatttacgcgcgaaaggattgattcttgttaaaatttattgcttgatcatactctttgtaactacatttgttggtggcgtatcgccttatttctatcgatggaatgaggggtttctcttgttaggaactcaatttgctggtggtgttttcttagggacttcattgatgcattttttgagtgattctgctacaacttttggtgtacttacagaaaaagagtacccttttgccttcatgttggcttctgcaggttatcttctcactatgtttagtgattgcattattatgtttgtgacaaaggggggtgtaaatgaatcaagtgagtccaaagttgaagtggatgaagaaggaaggtcaactaatattgatgagggacatggaacaaatccatttctaaagacaacttcacttggggatacaatacttctcattcttgcattgtgtttccactctatttttgaaggcattgctgttggagtatcagcttcaaagggagaggcatggagaaacctatggacaatttcattgcacaaaatatttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90152" stop="92804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90452" g_stop="90828" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90829" i_stop="91086" i_length="258">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91087" g_stop="91320" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="611" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92445" g_stop="92504" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="671" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E374812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90452" e_stop="90828"/>
          <exon e_start="91087" e_stop="91320"/>
          <exon e_start="92445" e_stop="92504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAGGTTAATTACCTATCGTAGCAGATAACCTATCTTATTAAATCTCGCTTTTTATAAATTTTTTAGGAGCTTTGATAGTTTGAAAATATCTTTAGACTACTGATGATGTATGTAACTTAAATTCTTATCAATTGTTATTGCATCATAACGCGTTCATGTTAAATCCTCCAAATGCAATACTACTAGAGGATCTGTCACACATCTGACAACATTATGAGGAACGCGCAAATCAAATAAAATGAGTAACTTTTTTTTTTGTAGGTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAGGTAAATAAACTATTGGGTATATATAATATTTTCTTTATTTATGTTGAGAGACTATCTCCGGGAGATTATATATAGATACAGACAGTATAAAGAAATAGATTATTTTAAGTGACCTAAGTTGATAGTGTTAAAAATCTACACACTATCAATAGTTCAATACACTATGTTAACCTAGAACATCTAGGGAATGTGTTACATGAGGACTAGAGGATGCTTGTTTTTAGTGAAAATAGAGTTTTACCTTCTTTAGTTTCATTTCATATTTGCTTTTGTAGAAAAACATTTACTCATTGTGATAATCCTAAATTAATAATACCATCAAGGGATACTATGCTTTCCTTCCGATATCCTTAACCAAATGTCTCGCATTTGAGCTATGGTAATAAAGAAAATATTTCAATATATATAGGGAATACTTTACTCTCCTTAGTATGCCTACATACCACGAATATGGATAGCTAGTCGGGTCAATACATAGGTCTCGGATAATTGCCCAAAAAAGGAGAATCGTCTTCAATAATGTGCTTTGGTGTAGGATATTTACTCTGAGTTTCTTATCATAAAATAAGTTATCATTTTCCTAAAAGGAAAACATAAAGTTTCCATATTTGTAGGAAATTGCTTAGGACTCTATAAATAGAGACATATTTGTTCTAACATAATTAACATTCACAATGTAGTCCTAGGAGCTTCGAGAGTTTTGGTTAGGAGAGAGAATTTGTGGGATACAAGTGATGCGTTATTACTTCCGTGAGCCTCTTTTTATTCCGAGTGAATTGTGTGAGGTTATTGCGTACTCTCGTATTTATAGTGGATTGTTCATCTCTTTTGTGGATGTAGGTCGATTGACCGAACCACCTTAGATCTTTGTGTCTTTTTGTATATTTCTCGTTTTGTCTTCTGACTTGTGGTCTTTCGAGGTTTGCTTTGTTAGGTTACACATGACACTTTAGTCCTAACACTTAAGTGGAGAAAAATCCCCTAATTGCCCTACAAAAACCCTAAAATTTTAGCTAAGAACTTTGTCACTTAATCCTTGCTAAATAAGATTATCAACATATTTTACTGTTTAGCTACAAAATTTATCCGTCGCTAATCCTCACATTCCTTGATGTAATTTTCAGCTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAG</genome_strand>
        <mrna_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAG..................................................................................................................................................................................................................................................................GTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202034" ref_strand="+" ref_description="SGN-E202034 [cLEC-7-L7]">
      <seq>ttccataaaaaagtcaactactctgttaacactattcctgtttttgttcttgaaatttttaattatcaatggtcatggtggagctgatgatgatgatgaacatgattcaaatggagatacaaatacaaatttacgcgcgaaaggattgattcttgttaaaatttattgcttgatcatactctttgtaactacatttgttggtggcgtatcgccttatttctatcgatggaatgaggggtttctcttgttaggaactcaatttgctggtggtgttttcttagggacttcattgatgcattttttgagtgattctgctacaacttttggtgtacttacagaaaaagagtacccttttgccttcatgttggcttctgcaggttatcttctcactatgtttagtgattgcattattatgtttgtgacaaaggggggtgtaaatgaatcaagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90152" stop="91460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90452" g_stop="90828" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90829" i_stop="91086" i_length="258">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91087" g_stop="91160" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="451" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E202034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90452" e_stop="90828"/>
          <exon e_start="91087" e_stop="91160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAGGTTAATTACCTATCGTAGCAGATAACCTATCTTATTAAATCTCGCTTTTTATAAATTTTTTAGGAGCTTTGATAGTTTGAAAATATCTTTAGACTACTGATGATGTATGTAACTTAAATTCTTATCAATTGTTATTGCATCATAACGCGTTCATGTTAAATCCTCCAAATGCAATACTACTAGAGGATCTGTCACACATCTGACAACATTATGAGGAACGCGCAAATCAAATAAAATGAGTAACTTTTTTTTTTGTAGGTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAG</genome_strand>
        <mrna_strand>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAG..................................................................................................................................................................................................................................................................GTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379373" ref_strand="+" ref_description="SGN-E379373 [TUS-1-K2](-)">
      <seq>aaaggggggtgtaaatgaatcaagtgagtccaaagttgaagtggatgaagaaggaaggtcaactaatattgatgagggacatggaacaaatccatttctaaagacaacttcacttggggatacaatacttctcattcttgcattgtgtttccactctatttttgaaggcattgctgttggagtatcagcttcaaagggagaggcatggagaaacctatggacaatttcattgcacaaaatatttgcagccattgcaatgggaattgcacttttaagaatgataccaaaaaggccatttctacttacttgtgcttactcttttgcctttgcaatttcaagccctataggtgtgggtataggaattgcaattgatgctactagtgaaggccgtacagctgattggacttatgctatttcaatggcaattgcttgtggggtttttatttatgtggcaattaatcacctaattgcaaaagggtttaaaccacaaaataaatgttattttgatactcaattcttcaagtttgttgctgtccttctaggtgttggggtgattgctgttgtcatgatatgggactaaattaaactaccttgttcagactcttcaaaatgtcgacaattgtatgttgcgtccttcaaaaatagtgcttttttttaagacctgatacggtgtgtgaacattattggagagctcgtgatgaaatatgtaaacattcatttttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90833" stop="93284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91133" g_stop="91320" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92445" g_stop="92984" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="727" r_length="539" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E379373" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91133" e_stop="91320"/>
          <exon e_start="92445" e_stop="92984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAGGTAAATAAACTATTGGGTATATATAATATTTTCTTTATTTATGTTGAGAGACTATCTCCGGGAGATTATATATAGATACAGACAGTATAAAGAAATAGATTATTTTAAGTGACCTAAGTTGATAGTGTTAAAAATCTACACACTATCAATAGTTCAATACACTATGTTAACCTAGAACATCTAGGGAATGTGTTACATGAGGACTAGAGGATGCTTGTTTTTAGTGAAAATAGAGTTTTACCTTCTTTAGTTTCATTTCATATTTGCTTTTGTAGAAAAACATTTACTCATTGTGATAATCCTAAATTAATAATACCATCAAGGGATACTATGCTTTCCTTCCGATATCCTTAACCAAATGTCTCGCATTTGAGCTATGGTAATAAAGAAAATATTTCAATATATATAGGGAATACTTTACTCTCCTTAGTATGCCTACATACCACGAATATGGATAGCTAGTCGGGTCAATACATAGGTCTCGGATAATTGCCCAAAAAAGGAGAATCGTCTTCAATAATGTGCTTTGGTGTAGGATATTTACTCTGAGTTTCTTATCATAAAATAAGTTATCATTTTCCTAAAAGGAAAACATAAAGTTTCCATATTTGTAGGAAATTGCTTAGGACTCTATAAATAGAGACATATTTGTTCTAACATAATTAACATTCACAATGTAGTCCTAGGAGCTTCGAGAGTTTTGGTTAGGAGAGAGAATTTGTGGGATACAAGTGATGCGTTATTACTTCCGTGAGCCTCTTTTTATTCCGAGTGAATTGTGTGAGGTTATTGCGTACTCTCGTATTTATAGTGGATTGTTCATCTCTTTTGTGGATGTAGGTCGATTGACCGAACCACCTTAGATCTTTGTGTCTTTTTGTATATTTCTCGTTTTGTCTTCTGACTTGTGGTCTTTCGAGGTTTGCTTTGTTAGGTTACACATGACACTTTAGTCCTAACACTTAAGTGGAGAAAAATCCCCTAATTGCCCTACAAAAACCCTAAAATTTTAGCTAAGAACTTTGTCACTTAATCCTTGCTAAATAAGATTATCAACATATTTTACTGTTTAGCTACAAAATTTATCCGTCGCTAATCCTCACATTCCTTGATGTAATTTTCAGCTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATT</genome_strand>
        <mrna_strand>AAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGCTCGTGATGAAATATGTAAACATTCA-TTTTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374811" ref_strand="+" ref_description="SGN-E374811 [TUS-14-N14](-)">
      <seq>gggtgtaaatgaatcaagtgagtccaaagttgaagtggataaagaaggaaggtcaactaatattgatgagggacatggaacaaatccatttctaaagacaacttcacttggggatacaatacttctcattcttgcattgtgtttccactctatttttgaaggcattgctgttggagtatcagcttcaaagggagaggcatggagaaacctatggacaatttcattgcacaaaatatttgcagccattgcaatgggaattgcacttttaagaatgataccaaaaaggccatttctacttacttgtgcttactcttttgcctttgcaatttcaagccctataggtgtgggtataggaattgcaattgatgctactagtgaaggccgtacagctgattggacttatgctatttcaatggcaattgcttgtggggtttttatttatgtggcaattaatcacctaattgcaaaagggtttaaaccacaaaataaatgttattttgatactcaattcttcaagtttgttgctgtccttctaggtgttggggtgattgctgttgtcatgatatgggactaaattaaactaccttgttcagactcttcaaaatgtcgacaattgtatgttgcgtccttcaaaaatagtgcttttttttaagacctgatacggtgtgtgaacattattggagagttcgtgatgaactatgtaaacattcattttttgaattttacatggggttttgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90839" stop="93303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91139" g_stop="91320" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92445" g_stop="93010" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="748" r_length="566" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E374811" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91139" e_stop="91320"/>
          <exon e_start="92445" e_stop="93010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAGGTAAATAAACTATTGGGTATATATAATATTTTCTTTATTTATGTTGAGAGACTATCTCCGGGAGATTATATATAGATACAGACAGTATAAAGAAATAGATTATTTTAAGTGACCTAAGTTGATAGTGTTAAAAATCTACACACTATCAATAGTTCAATACACTATGTTAACCTAGAACATCTAGGGAATGTGTTACATGAGGACTAGAGGATGCTTGTTTTTAGTGAAAATAGAGTTTTACCTTCTTTAGTTTCATTTCATATTTGCTTTTGTAGAAAAACATTTACTCATTGTGATAATCCTAAATTAATAATACCATCAAGGGATACTATGCTTTCCTTCCGATATCCTTAACCAAATGTCTCGCATTTGAGCTATGGTAATAAAGAAAATATTTCAATATATATAGGGAATACTTTACTCTCCTTAGTATGCCTACATACCACGAATATGGATAGCTAGTCGGGTCAATACATAGGTCTCGGATAATTGCCCAAAAAAGGAGAATCGTCTTCAATAATGTGCTTTGGTGTAGGATATTTACTCTGAGTTTCTTATCATAAAATAAGTTATCATTTTCCTAAAAGGAAAACATAAAGTTTCCATATTTGTAGGAAATTGCTTAGGACTCTATAAATAGAGACATATTTGTTCTAACATAATTAACATTCACAATGTAGTCCTAGGAGCTTCGAGAGTTTTGGTTAGGAGAGAGAATTTGTGGGATACAAGTGATGCGTTATTACTTCCGTGAGCCTCTTTTTATTCCGAGTGAATTGTGTGAGGTTATTGCGTACTCTCGTATTTATAGTGGATTGTTCATCTCTTTTGTGGATGTAGGTCGATTGACCGAACCACCTTAGATCTTTGTGTCTTTTTGTATATTTCTCGTTTTGTCTTCTGACTTGTGGTCTTTCGAGGTTTGCTTTGTTAGGTTACACATGACACTTTAGTCCTAACACTTAAGTGGAGAAAAATCCCCTAATTGCCCTACAAAAACCCTAAAATTTTAGCTAAGAACTTTGTCACTTAATCCTTGCTAAATAAGATTATCAACATATTTTACTGTTTAGCTACAAAATTTATCCGTCGCTAATCCTCACATTCCTTGATGTAATTTTCAGCTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAATCTTTAT</genome_strand>
        <mrna_strand>GGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATAAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357520" ref_strand="+" ref_description="SGN-E357520 [cTOS-23-D11]">
      <seq>tcattcttgcattgtgtttccactctatttttgaaggcattgctgttggagtatcagcttcaaagggagaggcatggagaaacctatggacaatttcattgcacaaaatatttgcagccattgcaatgggaattgcacttttaagaatgataccaaaaaggccatttctacttacttgtgcttactcttttgcctttgcaatttcaagccctataggtgtgggtataggaattgcaattgatgctactagtgaaggccgtacagctgattggacttatgctatttcaatggcaattgcttgtggggtttttatttatgtggcaattaatcacctaattgcaaaagggtttaaaccacaaaataaatgttattttgatactcaattcttcaagtttgttgctgtccttctaggtgttggggtgattgctgttgtcatgatatgggactaaattaaactaccttgttcagactcttcaaaatgtcgacaattgtatgttgcgtccttcaaaaatagtgcttttttttaagacctgatacggtgtgtgaacattattggagagttcgtgatgaactatgtaaacattcatttttttgattttacatggggttttgctaatctttattggtttgtttcttttgagattgaatatgcgtgcatgcatttttttttttcagtacaacattgggtattgattttataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0147H20-lAc0X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0147H20.1" temp_strand="+" temp_description="C06HBa0147H20.1  AC219213.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0147H20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90964" stop="93391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91264" g_stop="91320" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92445" g_stop="93094" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="706" r_length="649" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0147H20.1" gen_strand="+" ref_id="SGN-E357520" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0147H20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91264" e_stop="91320"/>
          <exon e_start="92445" e_stop="93094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAGGTAAATAAACTATTGGGTATATATAATATTTTCTTTATTTATGTTGAGAGACTATCTCCGGGAGATTATATATAGATACAGACAGTATAAAGAAATAGATTATTTTAAGTGACCTAAGTTGATAGTGTTAAAAATCTACACACTATCAATAGTTCAATACACTATGTTAACCTAGAACATCTAGGGAATGTGTTACATGAGGACTAGAGGATGCTTGTTTTTAGTGAAAATAGAGTTTTACCTTCTTTAGTTTCATTTCATATTTGCTTTTGTAGAAAAACATTTACTCATTGTGATAATCCTAAATTAATAATACCATCAAGGGATACTATGCTTTCCTTCCGATATCCTTAACCAAATGTCTCGCATTTGAGCTATGGTAATAAAGAAAATATTTCAATATATATAGGGAATACTTTACTCTCCTTAGTATGCCTACATACCACGAATATGGATAGCTAGTCGGGTCAATACATAGGTCTCGGATAATTGCCCAAAAAAGGAGAATCGTCTTCAATAATGTGCTTTGGTGTAGGATATTTACTCTGAGTTTCTTATCATAAAATAAGTTATCATTTTCCTAAAAGGAAAACATAAAGTTTCCATATTTGTAGGAAATTGCTTAGGACTCTATAAATAGAGACATATTTGTTCTAACATAATTAACATTCACAATGTAGTCCTAGGAGCTTCGAGAGTTTTGGTTAGGAGAGAGAATTTGTGGGATACAAGTGATGCGTTATTACTTCCGTGAGCCTCTTTTTATTCCGAGTGAATTGTGTGAGGTTATTGCGTACTCTCGTATTTATAGTGGATTGTTCATCTCTTTTGTGGATGTAGGTCGATTGACCGAACCACCTTAGATCTTTGTGTCTTTTTGTATATTTCTCGTTTTGTCTTCTGACTTGTGGTCTTTCGAGGTTTGCTTTGTTAGGTTACACATGACACTTTAGTCCTAACACTTAAGTGGAGAAAAATCCCCTAATTGCCCTACAAAAACCCTAAAATTTTAGCTAAGAACTTTGTCACTTAATCCTTGCTAAATAAGATTATCAACATATTTTACTGTTTAGCTACAAAATTTATCCGTCGCTAATCCTCACATTCCTTGATGTAATTTTCAGCTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAATCTTTATTGTTTTGTTTCTTTTGAGATTGAATTATGCGTGCATGCATTTTTTTTTTCCAGTACAACATTGGTTATTGATTTTATATAAGCA</genome_strand>
        <mrna_strand>TCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTTGATTTTACATGGGGTTTTGCTAATCTTTATTGGTTTGTTTCTTTTGAGATTGAA-TATGCGTGCATGCATTTTTTTTTTTCAGTACAACATTGGGTATTGATTTTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>88</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4173" PGL_stop="1453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4173" e_stop="4021"/>
            <exon e_start="2454" e_stop="2247"/>
            <exon e_start="1500" e_stop="1453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.900" acc_prob="0.882" e_score="0.966"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="4173" e_stop="4021" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4020" i_stop="2455" i_length="1566"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="2454" e_stop="2247" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.882">
            <gDNA_intron_boundary i_start="2246" i_stop="1501" i_length="746"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="1500" e_stop="1453" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4173" stop="4021"/>
              <exon start="2454" stop="2247"/>
              <exon start="1500" stop="1453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCCTTCTGTGAAGTTCAAATTTCAAATTCCAAAACCTAGAAATTGGTCATGGATGAACAAGTACAGCTCAATCCGATGTGCCGGAAAAGTCAATCGATGGTCCCTTGATGGCATGAATGCCCTTGTCACTGGTGGTACTAGAGGCATTGG : GCATGCGATAGTGGAGGAATTGTGTGGACTGGGAGCCACCGTGCATACGTGTGCCCGTAATGAAGATGAGCTTGAAATTTGTTTGAGGAGCTGGAAAGATGAGGGCTTTACAGTTTCTGGTTCCTTATGTGATGTGTCTTCTCAAGTTGATCGCCAAAAGTTAATGGAGGTTGTTTCGTCTACATTCAATGGGAAGCTCGACATTCTT : ATAAACAACGTGGGGACCAATATTCGCAAAGCTATGGTGGATTTTACT</gDNA_template>
            <first_frame> F  A  F  C  E  V  Q  I  S  N  S  K  T  *  K  L  V  M  D  E  Q  V  Q  L  N  P  M  C  R  K  S  Q  S  M  V  P  *  W  H  E  C  P  C  H  W  W  Y  *  R  H  W  :  A  C  D  S  G  G  I  V  W  T  G  S  H  R  A  Y  V  C  P  *  *  R  *  A  *  N  L  F  E  E  L  E  R  *  G  L  Y  S  F  W  F  L  M  *  C  V  F  S  S  *  S  P  K  V  N  G  G  C  F  V  Y  I  Q  W  E  A  R  H  S   : Y  K  Q  R  G  D  Q  Y  S  Q  S  Y  G  G  F  Y  </first_frame>
            <second_frame>  S  P  S  V  K  F  K  F  Q  I  P  K  P  R  N  W  S  W  M  N  K  Y  S  S  I  R  C  A  G  K  V  N  R  W  S  L  D  G  M  N  A  L  V  T  G  G  T  R  G  I  G :   H  A  I  V  E  E  L  C  G  L  G  A  T  V  H  T  C  A  R  N  E  D  E  L  E  I  C  L  R  S  W  K  D  E  G  F  T  V  S  G  S  L  C  D  V  S  S  Q  V  D  R  Q  K  L  M  E  V  V  S  S  T  F  N  G  K  L  D  I  L  :  I  N  N  V  G  T  N  I  R  K  A  M  V  D  F  T </second_frame>
            <third_frame>   R  L  L  *  S  S  N  F  K  F  Q  N  L  E  I  G  H  G  *  T  S  T  A  Q  S  D  V  P  E  K  S  I  D  G  P  L  M  A  *  M  P  L  S  L  V  V  L  E  A  L   : G  M  R  *  W  R  N  C  V  D  W  E  P  P  C  I  R  V  P  V  M  K  M  S  L  K  F  V  *  G  A  G  K  M  R  A  L  Q  F  L  V  P  Y  V  M  C  L  L  K  L  I  A  K  S  *  W  R  L  F  R  L  H  S  M  G  S  S  T  F  L :   *  T  T  W  G  P  I  F  A  K  L  W  W  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4172" stop="4021"/>
                    <exon start="2454" stop="2247"/>
                    <exon start="1500" stop="1453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSVKFKFQIPKPRNWSWMNKYSSIRCAGKVNRWSLDGMNALVTGGTRGIGHAIVEELCGLGATVHTCARNEDELEICLRSWKDEGFTVSGSLCDVSSQVDRQKLMEVVSSTFNGKLDILINNVGTNIRKAMVDFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11254" PGL_stop="7374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11254" e_stop="10959"/>
            <exon e_start="10160" e_stop="9928"/>
            <exon e_start="9617" e_stop="9165"/>
            <exon e_start="8995" e_stop="8927"/>
            <exon e_start="8668" e_stop="8610"/>
            <exon e_start="8069" e_stop="7374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.368" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11254" e_stop="10959" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10160" e_stop="9928" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="9617" e_stop="9165" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8995" e_stop="8927" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.368" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8668" e_stop="8610" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.913">
            <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="8069" e_stop="7374" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11254" stop="10959"/>
              <exon start="10160" stop="10024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11248" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11242" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11241" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11241" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11238" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746251" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11195" stop="10959"/>
              <exon start="10160" stop="10039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11163" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11102" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11101" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11097" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11097" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11066" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11021" stop="10959"/>
              <exon start="10160" stop="10063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10978" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10145" stop="9928"/>
              <exon start="9617" stop="9335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9984" stop="9928"/>
              <exon start="9617" stop="9185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9982" stop="9928"/>
              <exon start="9617" stop="9313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9982" stop="9928"/>
              <exon start="9617" stop="9342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9595" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9474" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9393" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9364" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9317" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9257" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7837" stop="7539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7824" stop="7374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA : GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG : GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG : CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</gDNA_template>
            <first_frame> C  H  R  Y  T  I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   *  V  T  *  C  D  V  F  D  T  C  *  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *   : S  G  E  V  S  D  S  *  A  R  C  G  C  F  L  Q  H  S  G  G  R  K  *   : G  C  R  S  L  C  *  S  I  S  T  A  K  D  C  G  *  T  F  *  :  R  H  S  *  G  W  S  E  K  G  L  C  R  S  P  *  K  I  E  S  *  G  R  S  S  R  S  C  *  S  I  Q  E  A  G  T  R  S  K  E  A  *  K  E  R  S  K  G  C  C  Y  H  R  K  G  T  *  R  E  G  V  I  T  F  R  S  F  C  *  K  S  T  R  Q  S  K  R  L  *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N  K  R  K  P  K  Y  *  F  S  I  Y  H  F  S  L  I  M  R  L  Q  T  M  V  *  L  R  L  S  E  K  A  C  K  S  L  H  I  F  C  G  S  *  C  I  F  A  S  N  A  T  F  R  H  L  F </first_frame>
            <second_frame>  A  T  D  I  Q  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : G  K  L  P  D  V  T  S  L  I  P  A  S  T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  :  V  G  K  S  Q  I  A  K  L  V  V  D  V  F  S  N  T  A  V  A  E  N  K  :  V  V  E  V  F  A  D  P  S  A  P  P  K  T  V  D  E  L  F  S :   V  I  P  E  D  G  R  R  K  A  Y  A  E  A  L  E  K  S  K  A  E  E  E  A  R  G  V  A  E  A  S  K  R  Q  E  Q  E  A  K  K  L  E  K  K  E  A  K  A  A  A  T  I  A  K  E  P  E  E  K  A  S  S  P  S  V  P  S  V  E  S  L  L  D  K  A  K  D  F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *  I  R  E  S  Q  N  I  N  F  L  Y  I  I  L  A  *  L  *  G  Y  K  Q  W  F  N  *  G  *  V  R  K  H  V  N  P  C  T  F  S  V  D  L  S  V  Y  L  P  Q  M  Q  H  S  G  T  C   </second_frame>
            <third_frame>   P  Q  I  Y  N  F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  V  S  Y  L  M  *  R  L  *  Y  L  L  A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K :   W  G  S  L  R  *  L  S  S  L  W  M  F  S  P  T  Q  R  W  Q  K  I  R :   L  S  K  S  L  L  I  H  Q  H  R  Q  R  L  W  M  N  F  L   : A  S  F  L  R  M  V  G  E  R  P  M  Q  K  P  L  K  N  R  K  L  R  K  K  L  E  E  L  L  K  H  P  R  G  R  N  K  K  Q  R  S  L  K  R  K  K  Q  R  L  L  L  P  S  Q  R  N  L  K  R  R  R  H  H  L  P  F  L  L  L  K  V  Y  *  T  K  Q  K  T  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  *  E  K  A  K  I  L  I  F  Y  I  S  F  *  P  N  Y  E  V  T  N  N  G  L  T  E  A  E  *  E  S  M  *  I  P  A  H  F  L  W  I  L  V  Y  I  C  L  K  C  N  I  Q  A  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11133" stop="10959"/>
                    <exon start="10160" stop="9928"/>
                    <exon start="9617" stop="9165"/>
                    <exon start="8995" stop="8927"/>
                    <exon start="8668" stop="8610"/>
                    <exon start="8069" stop="7550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1506</number_coding_nucleotides>
                  <number_encoded_amino_acids>502</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNSYPMAPTLTSNSFLLSTTPHPRLSFKNPRFIVSAKKSGQNQETTTNSGNPFNFDFGKLPDVTSLIPASTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVGKSQIAKLVVDVFSNTAVAENKVVEVFADPSAPPKTVDELFSVIPEDGRRKAYAEALEKSKAEEEARGVAEASKRQEQEAKKLEKKEAKAAATIAKEPEEKASSPSVPSVESLLDKAKDFSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11254" e_stop="10959"/>
            <exon e_start="10160" e_stop="9928"/>
            <exon e_start="9617" e_stop="9160"/>
            <exon e_start="8995" e_stop="8927"/>
            <exon e_start="8668" e_stop="8610"/>
            <exon e_start="8069" e_stop="7374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.368" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11254" e_stop="10959" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10958" i_stop="10161" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10160" e_stop="9928" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9617" e_stop="9160" e_length="458"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9159" i_stop="8996" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8995" e_stop="8927" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.368" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8668" e_stop="8610" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.913">
            <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="8069" e_stop="7374" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11254" stop="10959"/>
              <exon start="10160" stop="10024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11248" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11242" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11241" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11241" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11195" stop="10959"/>
              <exon start="10160" stop="10039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11163" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11102" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11101" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11097" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11097" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11066" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11021" stop="10959"/>
              <exon start="10160" stop="10063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10978" stop="10959"/>
              <exon start="10160" stop="9928"/>
              <exon start="9617" stop="9459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10145" stop="9928"/>
              <exon start="9617" stop="9335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10019" stop="9928"/>
              <exon start="9617" stop="9160"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9984" stop="9928"/>
              <exon start="9617" stop="9185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9982" stop="9928"/>
              <exon start="9617" stop="9313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9982" stop="9928"/>
              <exon start="9617" stop="9342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7837" stop="7539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7824" stop="7374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAAT : GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG : GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG : CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</gDNA_template>
            <first_frame> C  H  R  Y  T  I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   *  V  T  *  C  D  V  F  D  T  C  *  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *  S  N  :  V  G  K  S  Q  I  A  K  L  V  V  D  V  F  S  N  T  A  V  A  E  N  K  :  V  V  E  V  F  A  D  P  S  A  P  P  K  T  V  D  E  L  F  S :   V  I  P  E  D  G  R  R  K  A  Y  A  E  A  L  E  K  S  K  A  E  E  E  A  R  G  V  A  E  A  S  K  R  Q  E  Q  E  A  K  K  L  E  K  K  E  A  K  A  A  A  T  I  A  K  E  P  E  E  K  A  S  S  P  S  V  P  S  V  E  S  L  L  D  K  A  K  D  F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *  I  R  E  S  Q  N  I  N  F  L  Y  I  I  L  A  *  L  *  G  Y  K  Q  W  F  N  *  G  *  V  R  K  H  V  N  P  C  T  F  S  V  D  L  S  V  Y  L  P  Q  M  Q  H  S  G  T  C   </first_frame>
            <second_frame>  A  T  D  I  Q  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : G  K  L  P  D  V  T  S  L  I  P  A  S  T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  V  M :   W  G  S  L  R  *  L  S  S  L  W  M  F  S  P  T  Q  R  W  Q  K  I  R :   L  S  K  S  L  L  I  H  Q  H  R  Q  R  L  W  M  N  F  L   : A  S  F  L  R  M  V  G  E  R  P  M  Q  K  P  L  K  N  R  K  L  R  K  K  L  E  E  L  L  K  H  P  R  G  R  N  K  K  Q  R  S  L  K  R  K  K  Q  R  L  L  L  P  S  Q  R  N  L  K  R  R  R  H  H  L  P  F  L  L  L  K  V  Y  *  T  K  Q  K  T  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  *  E  K  A  K  I  L  I  F  Y  I  S  F  *  P  N  Y  E  V  T  N  N  G  L  T  E  A  E  *  E  S  M  *  I  P  A  H  F  L  W  I  L  V  Y  I  C  L  K  C  N  I  Q  A  L  V  </second_frame>
            <third_frame>   P  Q  I  Y  N  F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  V  S  Y  L  M  *  R  L  *  Y  L  L  A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K  *   : C  G  E  V  S  D  S  *  A  R  C  G  C  F  L  Q  H  S  G  G  R  K  *   : G  C  R  S  L  C  *  S  I  S  T  A  K  D  C  G  *  T  F  *  :  R  H  S  *  G  W  S  E  K  G  L  C  R  S  P  *  K  I  E  S  *  G  R  S  S  R  S  C  *  S  I  Q  E  A  G  T  R  S  K  E  A  *  K  E  R  S  K  G  C  C  Y  H  R  K  G  T  *  R  E  G  V  I  T  F  R  S  F  C  *  K  S  T  R  Q  S  K  R  L  *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N  K  R  K  P  K  Y  *  F  S  I  Y  H  F  S  L  I  M  R  L  Q  T  M  V  *  L  R  L  S  E  K  A  C  K  S  L  H  I  F  C  G  S  *  C  I  F  A  S  N  A  T  F  R  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11133" stop="10959"/>
                    <exon start="10160" stop="9928"/>
                    <exon start="9617" stop="9160"/>
                    <exon start="8995" stop="8977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNSYPMAPTLTSNSFLLSTTPHPRLSFKNPRFIVSAKKSGQNQETTTNSGNPFNFDFGKLPDVTSLIPASTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVMWGSLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9165" stop="9160"/>
                    <exon start="8995" stop="8927"/>
                    <exon start="8668" stop="8610"/>
                    <exon start="8069" stop="7550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNVGKSQIAKLVVDVFSNTAVAENKVVEVFADPSAPPKTVDELFSVIPEDGRRKAYAEALEKSKAEEEARGVAEASKRQEQEAKKLEKKEAKAAATIAKEPEEKASSPSVPSVESLLDKAKDFSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11239" e_stop="10959"/>
            <exon e_start="10123" e_stop="9928"/>
            <exon e_start="9617" e_stop="9165"/>
            <exon e_start="8995" e_stop="8927"/>
            <exon e_start="8668" e_stop="8610"/>
            <exon e_start="8069" e_stop="7374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.368" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11239" e_stop="10959" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10958" i_stop="10124" i_length="835"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="10123" e_stop="9928" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9927" i_stop="9618" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="9617" e_stop="9165" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9164" i_stop="8996" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8995" e_stop="8927" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.368" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8926" i_stop="8669" i_length="258"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8668" e_stop="8610" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.913">
            <gDNA_intron_boundary i_start="8609" i_stop="8070" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="8069" e_stop="7374" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11239" stop="10959"/>
              <exon start="10123" stop="9928"/>
              <exon start="9617" stop="9388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9984" stop="9928"/>
              <exon start="9617" stop="9185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9982" stop="9928"/>
              <exon start="9617" stop="9313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9982" stop="9928"/>
              <exon start="9617" stop="9342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9595" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9474" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9393" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9364" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9317" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9257" stop="9165"/>
              <exon start="8995" stop="8927"/>
              <exon start="8668" stop="8610"/>
              <exon start="8069" stop="7747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7837" stop="7539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7824" stop="7374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : CACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA : GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG : GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG : CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</gDNA_template>
            <first_frame> I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  :  V  G  K  S  Q  I  A  K  L  V  V  D  V  F  S  N  T  A  V  A  E  N  K  :  V  V  E  V  F  A  D  P  S  A  P  P  K  T  V  D  E  L  F  S :   V  I  P  E  D  G  R  R  K  A  Y  A  E  A  L  E  K  S  K  A  E  E  E  A  R  G  V  A  E  A  S  K  R  Q  E  Q  E  A  K  K  L  E  K  K  E  A  K  A  A  A  T  I  A  K  E  P  E  E  K  A  S  S  P  S  V  P  S  V  E  S  L  L  D  K  A  K  D  F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *  I  R  E  S  Q  N  I  N  F  L  Y  I  I  L  A  *  L  *  G  Y  K  Q  W  F  N  *  G  *  V  R  K  H  V  N  P  C  T  F  S  V  D  L  S  V  Y  L  P  Q  M  Q  H  S  G  T  C   </first_frame>
            <second_frame>  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K :   W  G  S  L  R  *  L  S  S  L  W  M  F  S  P  T  Q  R  W  Q  K  I  R :   L  S  K  S  L  L  I  H  Q  H  R  Q  R  L  W  M  N  F  L   : A  S  F  L  R  M  V  G  E  R  P  M  Q  K  P  L  K  N  R  K  L  R  K  K  L  E  E  L  L  K  H  P  R  G  R  N  K  K  Q  R  S  L  K  R  K  K  Q  R  L  L  L  P  S  Q  R  N  L  K  R  R  R  H  H  L  P  F  L  L  L  K  V  Y  *  T  K  Q  K  T  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  *  E  K  A  K  I  L  I  F  Y  I  S  F  *  P  N  Y  E  V  T  N  N  G  L  T  E  A  E  *  E  S  M  *  I  P  A  H  F  L  W  I  L  V  Y  I  C  L  K  C  N  I  Q  A  L  V  </second_frame>
            <third_frame>   F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *   : S  G  E  V  S  D  S  *  A  R  C  G  C  F  L  Q  H  S  G  G  R  K  *   : G  C  R  S  L  C  *  S  I  S  T  A  K  D  C  G  *  T  F  *  :  R  H  S  *  G  W  S  E  K  G  L  C  R  S  P  *  K  I  E  S  *  G  R  S  S  R  S  C  *  S  I  Q  E  A  G  T  R  S  K  E  A  *  K  E  R  S  K  G  C  C  Y  H  R  K  G  T  *  R  E  G  V  I  T  F  R  S  F  C  *  K  S  T  R  Q  S  K  R  L  *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N  K  R  K  P  K  Y  *  F  S  I  Y  H  F  S  L  I  M  R  L  Q  T  M  V  *  L  R  L  S  E  K  A  C  K  S  L  H  I  F  C  G  S  *  C  I  F  A  S  N  A  T  F  R  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10963" stop="10959"/>
                    <exon start="10123" stop="9928"/>
                    <exon start="9617" stop="9165"/>
                    <exon start="8995" stop="8927"/>
                    <exon start="8668" stop="8610"/>
                    <exon start="8069" stop="7550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVGKSQIAKLVVDVFSNTAVAENKVVEVFADPSAPPKTVDELFSVIPEDGRRKAYAEALEKSKAEEEARGVAEASKRQEQEAKKLEKKEAKAAATIAKEPEEKASSPSVPSVESLLDKAKDFSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32132" PGL_stop="27397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32132" e_stop="31721"/>
            <exon e_start="31634" e_stop="31493"/>
            <exon e_start="31379" e_stop="31272"/>
            <exon e_start="31078" e_stop="30866"/>
            <exon e_start="30781" e_stop="30671"/>
            <exon e_start="29844" e_stop="29650"/>
            <exon e_start="28233" e_stop="28059"/>
            <exon e_start="27810" e_stop="27397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="0.995"/>
          <exon-intron don_prob="0.923" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32132" e_stop="31721" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="31720" i_stop="31635" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31634" e_stop="31493" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31492" i_stop="31380" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31379" e_stop="31272" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.789" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31271" i_stop="31079" i_length="193"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="31078" e_stop="30866" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30865" i_stop="30782" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30781" e_stop="30671" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.961">
            <gDNA_intron_boundary i_start="30670" i_stop="29845" i_length="826"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29844" e_stop="29650" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29649" i_stop="28234" i_length="1416"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28233" e_stop="28059" e_length="175"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="27810" e_stop="27397" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32132" stop="31721"/>
              <exon start="31634" stop="31493"/>
              <exon start="31379" stop="31272"/>
              <exon start="31078" stop="30881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31013" stop="30866"/>
              <exon start="30781" stop="30671"/>
              <exon start="29844" stop="29650"/>
              <exon start="28233" stop="28059"/>
              <exon start="27810" stop="27619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30906" stop="30866"/>
              <exon start="30781" stop="30671"/>
              <exon start="29844" stop="29650"/>
              <exon start="28233" stop="28092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30730" stop="30671"/>
              <exon start="29844" stop="29650"/>
              <exon start="28233" stop="28059"/>
              <exon start="27810" stop="27554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29829" stop="29650"/>
              <exon start="28233" stop="28107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29733" stop="29650"/>
              <exon start="28233" stop="28059"/>
              <exon start="27810" stop="27397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29733" stop="29650"/>
              <exon start="28233" stop="28059"/>
              <exon start="27810" stop="27500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29669" stop="29650"/>
              <exon start="28233" stop="28059"/>
              <exon start="27810" stop="27715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28118" stop="28059"/>
              <exon start="27810" stop="27422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTGGACAGGAACTATATGGGTAATTCATATGTGGACTTGTTTCAGAAAGCTTATCTCAGTAGTGTGCTACCTCAGAAATCTCAATATGGGGTCCCATTAAATAGCAAGACTAGCGGTTCAGGTCATCCTGGCTATTATGGAAATTCTGCATTTGGAGTTGGTCTATCATATCCTGGGAGTCCTTTAGCAAGTCCAGTCTCTCCAGTAGGACCTGGTAGTCCTATGAGGCATAGTGATTATAATATGAGATTTCCTGGTAGAATAAGAAACATAGCTGGAGGTGTCATGGGACCATATCACTTGGATAACATGGAGAACAGCGTCGCATCCTCCCTACTGGAGGAGTTCAAAAGCAACAAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAG : TGCTGACCAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAACATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAATTATGTAATCCAGAAG : TTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGCATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAAAAG : GCAATAGAAGTAGTTGACGTGGACCAGAAAATTAAAATGGTTGAGGAGCTTGATGGTCATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAG : AGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG : CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG : GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCATCTCAAA</gDNA_template>
            <first_frame> P  W  T  G  T  I  W  V  I  H  M  W  T  C  F  R  K  L  I  S  V  V  C  Y  L  R  N  L  N  M  G  S  H  *  I  A  R  L  A  V  Q  V  I  L  A  I  M  E  I  L  H  L  E  L  V  Y  H  I  L  G  V  L  *  Q  V  Q  S  L  Q  *  D  L  V  V  L  *  G  I  V  I  I  I  *  D  F  L  V  E  *  E  T  *  L  E  V  S  W  D  H  I  T  W  I  T  W  R  T  A  S  H  P  P  Y  W  R  S  S  K  A  T  R  P  S  V  L  N  F  Q  K  L  Q  V  T  L  L  S  S   : V  L  T  S  M  G  A  D  S  F  N  K  N  S  K  L  Q  P  L  R  K  K  T  W  F  S  R  K  F  S  P  K  L  L  L  *  *  L  M  S  L  G  I  M  *  S  R  S :   F  L  N  M  E  W  H  L  R  G  E  N  W  L  A  Y  S  L  G  M  F  *  R  *  A  F  K  C  M  V  V  V  *  Y  K  R :   Q  *  K  *  L  T  W  T  R  K  L  K  W  L  R  S  L  M  V  M  L  C  A  V  Y  E  I  R  M  V  I  M  S  F  R  N  V  L  N  A  Y  Q  N  F  I  S  N  L  S  S  Q  H  F  L  D  K  L  L  L  S  Q  P  I  H  M  A  V  E  L  Y  R :   E  Y  W  N  T  V  T  I  Q  K  L  K  V  K  *  W  K  K  S  L  D  L  *  A  C  W  H  K  I  N  M  A  I  M  L  F  S :   M  Y  W  S  T  G  S  R  M  S  A  L  L  *  F  R  N  *  L  G  R  L  Y  K  *  A  S  R  N  L  L  R  T  L  L  R  S  V  *  L  S  V  I  P  V  N  D  S  Y  W  *  M  R  C  L  A  Q  L  M  K  M  S  L  F  R :   L  *  *  K  I  S  L  Q  I  M  *  Y  R  R  F  W  K  L  V  V  I  S  N  A  S  *  S  C  R  E  L  K  F  T  *  M  L  *  R  N  I  L  T  E  S  I  L  S  P  V  L  K  S  *  L  L  L  G  :  K  G  G  L  L  R  S  P  *  V  L  L  S  H  V  G  K  E  S  C  T  A  N  *  G  *  F  E  L  P  I  F  H  I  C  V  L  L  F  A  N  K  S  C  C  M  Y  *  R  R  C  T  L  C  S  *  K  N  I  N  I  R  Y  A  E  A  Q  M  S  N  I  R  D  G  C  A  D  G  S  *  G  V  K  K  K  E  D  K  K  G  E  V  V  L  H  R  R  D  C  T  N  V  A  F  C  W  R  V  D  V  L  G  E  G  Q  N  F  I  V  W  Y  F  D  N  F  I  S  F  M  A  K  Y  I  L  L  H  L  K </first_frame>
            <second_frame>  L  G  Q  E  L  Y  G  *  F  I  C  G  L  V  S  E  S  L  S  Q  *  C  A  T  S  E  I  S  I  W  G  P  I  K  *  Q  D  *  R  F  R  S  S  W  L  L  W  K  F  C  I  W  S  W  S  I  I  S  W  E  S  F  S  K  S  S  L  S  S  R  T  W  *  S  Y  E  A  *  *  L  *  Y  E  I  S  W  *  N  K  K  H  S  W  R  C  H  G  T  I  S  L  G  *  H  G  E  Q  R  R  I  L  P  T  G  G  V  Q  K  Q  Q  G  Q  V  F  *  T  F  R  N  C  R  S  R  C  *  V  Q  :  C  *  P  V  W  E  P  I  H  S  T  K  T  R  N  C  N  H  *  G  K  K  H  G  F  P  G  N  F  P  P  S  S  Y  F  D  D  *  C  L  W  E  L  C  N  P  E   : V  F  *  T  W  N  G  I  S  E  E  R  I  G  *  H  T  L  W  A  C  S  N  A  E  P  S  N  V  W  L  S  C  D  T  K   : G  N  R  S  S  *  R  G  P  E  N  *  N  G  *  G  A  *  W  S  C  Y  A  L  C  T  R  S  E  W  *  S  C  H  S  E  M  Y  *  M  R  T  R  T  S  Y  P  I  Y  R  L  N  I  F  W  T  S  Y  Y  S  L  N  P  S  I  W  L  S  S  Y  T   : E  S  I  G  T  L  *  Q  S  R  N  S  K  *  S  D  G  R  N  P  W  I  C  K  H  V  G  T  R  S  I  W  Q  L  C  C  S   : A  C  I  G  A  R  E  A  G  *  A  L  Y  Y  N  S  G  T  S  W  E  D  C  T  N  E  P  A  E  I  C  F  E  R  C  *  E  V  F  N  F  L  *  F  Q  *  T  T  A  I  G  E  *  D  A  W  H  N  *  *  K  *  A  S  S   : G  Y  D  E  R  S  V  C  K  L  C  S  T  E  G  S  G  N  L  *  *  S  A  T  R  A  D  H  V  E  N  *  S  S  L  E  C  S  E  E  I  Y  L  R  K  A  Y  C  R  P  C  *  K  A  S  C  C  W  G :   K  E  D  C  C  A  V  P  K  Y  C  L  V  M  *  E  K  K  V  V  Q  L  T  E  A  S  L  S  Y  L  S  S  T  S  V  F  C  Y  L  Q  I  K  V  V  A  C  T  R  G  D  V  H  C  V  V  K  K  T  *  I  S  G  M  L  K  L  R  C  Q  I  F  E  M  A  V  Q  M  E  V  E  V  *  K  K  R  K  I  K  K  A  R  *  F  Y  I  D  A  T  V  Q  M  L  P  F  V  G  E  L  M  F  *  G  K  V  R  I  L  L  Y  G  I  S  T  I  L  F  L  L  W  P  S  I  F  Y  F  I  S   </second_frame>
            <third_frame>   L  D  R  N  Y  M  G  N  S  Y  V  D  L  F  Q  K  A  Y  L  S  S  V  L  P  Q  K  S  Q  Y  G  V  P  L  N  S  K  T  S  G  S  G  H  P  G  Y  Y  G  N  S  A  F  G  V  G  L  S  Y  P  G  S  P  L  A  S  P  V  S  P  V  G  P  G  S  P  M  R  H  S  D  Y  N  M  R  F  P  G  R  I  R  N  I  A  G  G  V  M  G  P  Y  H  L  D  N  M  E  N  S  V  A  S  S  L  L  E  E  F  K  S  N  K  A  K  C  F  E  L  S  E  I  A  G  H  V  V  E  F  S :   A  D  Q  Y  G  S  R  F  I  Q  Q  K  L  E  T  A  T  T  E  E  K  N  M  V  F  Q  E  I  F  P  Q  A  L  T  L  M  T  D  V  F  G  N  Y  V  I  Q  K  :  F  F  E  H  G  M  A  S  Q  R  R  E  L  A  S  I  L  F  G  H  V  L  T  L  S  L  Q  M  Y  G  C  R  V  I  Q  K  :  A  I  E  V  V  D  V  D  Q  K  I  K  M  V  E  E  L  D  G  H  V  M  R  C  V  R  D  Q  N  G  N  H  V  I  Q  K  C  I  E  C  V  P  E  L  H  I  Q  F  I  V  S  T  F  F  G  Q  V  I  T  L  S  T  H  P  Y  G  C  R  V  I  Q  :  R  V  L  E  H  C  D  N  P  E  T  Q  S  K  V  M  E  E  I  L  G  S  V  S  M  L  A  Q  D  Q  Y  G  N  Y  V  V  Q  :  H  V  L  E  H  G  K  P  D  E  R  S  T  I  I  Q  E  L  A  G  K  I  V  Q  M  S  Q  Q  K  F  A  S  N  V  V  E  K  C  L  T  F  C  N  S  S  E  R  Q  L  L  V  N  E  M  L  G  T  T  D  E  N  E  P  L  Q  :  A  M  M  K  D  Q  F  A  N  Y  V  V  Q  K  V  L  E  T  C  S  D  Q  Q  R  E  L  I  M  S  R  I  K  V  H  L  N  A  L  K  K  Y  T  Y  G  K  H  I  V  A  R  V  E  K  L  V  A  A  G   : E  R  R  I  A  A  Q  S  L  S  T  A  *  S  C  R  K  R  K  L  Y  S  *  L  R  L  V  *  A  T  Y  L  P  H  L  C  F  V  I  C  K  *  K  L  L  H  V  L  E  E  M  Y  I  V  *  L  K  K  H  K  Y  Q  V  C  *  S  S  D  V  K  Y  S  R  W  L  C  R  W  K  L  R  C  K  K  K  G  R  *  K  R  R  G  S  F  T  S  T  R  L  Y  K  C  C  L  L  L  E  S  *  C  F  R  G  R  S  E  F  Y  C  M  V  F  R  Q  F  Y  F  F  Y  G  Q  V  Y  S  T  S  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32130" stop="31721"/>
                    <exon start="31634" stop="31493"/>
                    <exon start="31379" stop="31272"/>
                    <exon start="31078" stop="30866"/>
                    <exon start="30781" stop="30671"/>
                    <exon start="29844" stop="29650"/>
                    <exon start="28233" stop="28059"/>
                    <exon start="27810" stop="27773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDRNYMGNSYVDLFQKAYLSSVLPQKSQYGVPLNSKTSGSGHPGYYGNSAFGVGLSYPGSPLASPVSPVGPGSPMRHSDYNMRFPGRIRNIAGGVMGPYHLDNMENSVASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIFPQALTLMTDVFGNYVIQKFFEHGMASQRRELASILFGHVLTLSLQMYGCRVIQKAIEVVDVDQKIKMVEELDGHVMRCVRDQNGNHVIQKCIECVPELHIQFIVSTFFGQVITLSTHPYGCRVIQRVLEHCDNPETQSKVMEEILGSVSMLAQDQYGNYVVQHVLEHGKPDERSTIIQELAGKIVQMSQQKFASNVVEKCLTFCNSSERQLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCSDQQRELIMSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSLSTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29281" e_stop="28059"/>
            <exon e_start="27810" e_stop="27422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="29281" e_stop="28059" e_length="1223"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28058" i_stop="27811" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27810" e_stop="27422" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29281" stop="28408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28958" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28958" stop="28258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28957" stop="28333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28276" stop="28059"/>
              <exon start="27810" stop="27442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28118" stop="28059"/>
              <exon start="27810" stop="27422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGC</gDNA_template>
            <first_frame> P  R  D  C  *  T  N  D  C  C  L  L  V  G  L  Y  *  D  T  T  L  S  S  S  L  P  L  F  M  F  L  F  L  L  R  C  M  A  L  Q  S  Q  I  N  R  *  G  S  Q  L  F  *  F  *  D  V  A  *  M  G  H  Q  S  L  K  K  G  *  T  W  K  K  K  L  V  *  P  I  F  C  G  T  C  F  *  K  A  R  S  G  *  R  *  S  Y  Q  T  I  I  H  *  S  R  F  F  Y  Y  S  V  S  *  L  Q  K  L  T  Q  K  N  L  K  T  N  C  C  R  I  E  D  K  I  L  N  S  L  A  L  F  K  L  K  S  W  I  M  L  N  S  K  *  A  Q  K  *  Y  V  L  A  I  I  S  K  L  L  L  K  L  A  A  L  *  P  A  L  T  C  P  *  Q  L  L  K  G  I  *  N  *  G  K  W  *  C  C  I  S  F  W  L  L  I  Y  S  P  F  Q  T  Y  H  G  W  R  A  E  V  A  V  S  S  D  L  C  I  L  F  V  L  F  D  I  L  T  C  L  V  P  F  *  Q  N  Y  S  T  L  D  A  *  T  D  V  L  E  L  F  S  K  K  D  G  A  S  G  V  G  V  R  L  E  C  F  L  Y  V  K  I  P  R  V  F  Y  I  I  I  L  P  Q  Q  Y  H  A  I  T  L  C  I  F  G  N  R  V  Y  L  R  S  T  T  T  C  T  Y  G  F  D  F  G  S  S  C  N  I  *  T  F  K  *  S  C  F  S  S  L  F  S  N  *  N  Q  L  C  I  V  F  S  H  L  S  S  F  Y  P  G  Y  D  E  R  S  V  C  K  L  C  S  T  E  G  S  G  N  L  *  *  S  A  T  R  A  D  H  V  E  N  *  S  S  L  E  C  S  E  E  I  Y  L  R  K  A  Y  C  R  P  C  *  K  A  S  C  C  W  G :   K  E  D  C  C  A  V  P  K  Y  C  L  V  M  *  E  K  K  V  V  Q  L  T  E  A  S  L  S  Y  L  S  S  T  S  V  F  C  Y  L  Q  I  K  V  V  A  C  T  R  G  D  V  H  C  V  V  K  K  T  *  I  S  G  M  L  K  L  R  C  Q  I  F  E  M  A  V  Q  M  E  V  E  V  *  K  K  R  K  I  K  K  A  R  *  F  Y  I  D  A  T  V  Q  M  L  P  F  V  G  E  L  M  F  *  G  K  V  R  I  L  L  Y  G  I  S  T  I  L  F  L  L  W  </first_frame>
            <second_frame>  L  E  I  A  E  L  M  I  V  V  F  W  W  A  S  I  E  I  Q  P  Y  Q  V  L  Y  L  C  L  C  S  C  S  C  *  D  A  W  H  C  S  L  R  L  I  A  K  V  P  S  C  F  N  F  R  M  *  L  E  W  D  I  S  L  L  R  K  V  E  L  G  R  K  N  W  Y  N  R  Y  F  V  A  L  V  F  E  R  Q  E  V  V  E  D  E  V  T  K  Q  S  F  I  N  P  D  S  S  I  I  Q  F  P  S  S  K  N  *  P  R  K  T  S  K  P  T  V  A  E  L  K  I  R  Y  *  T  L  L  L  Y  S  N  *  N  H  G  L  C  *  I  Q  N  K  H  K  S  D  M  C  *  L  *  F  L  N  F  S  *  N  *  L  H  C  D  Q  H  *  L  A  L  D  S  C  *  K  A  F  E  T  E  A  N  G  D  V  A  *  V  F  G  C  *  F  I  H  R  S  K  H  I  M  V  G  G  Q  R  *  L  S  L  L  T  F  V  F  C  L  C  F  L  T  S  *  H  V  W  S  H  F  N  K  T  T  R  L  W  M  L  R  L  M  C  W  N  S  S  Q  K  K  M  E  Q  V  G  W  V  F  A  W  S  V  F  S  M  S  R  Y  P  E  F  S  I  *  L  F  Y  L  N  N  I  M  L  L  L  F  A  S  L  G  I  E  F  I  *  E  V  L  P  H  V  P  M  V  L  I  L  V  A  V  V  T  Y  K  L  L  N  S  L  V  S  L  L  S  S  L  I  E  I  S  C  A  L  C  F  H  I  F  L  L  F  I  Q  A  M  M  K  D  Q  F  A  N  Y  V  V  Q  K  V  L  E  T  C  S  D  Q  Q  R  E  L  I  M  S  R  I  K  V  H  L  N  A  L  K  K  Y  T  Y  G  K  H  I  V  A  R  V  E  K  L  V  A  A  G   : E  R  R  I  A  A  Q  S  L  S  T  A  *  S  C  R  K  R  K  L  Y  S  *  L  R  L  V  *  A  T  Y  L  P  H  L  C  F  V  I  C  K  *  K  L  L  H  V  L  E  E  M  Y  I  V  *  L  K  K  H  K  Y  Q  V  C  *  S  S  D  V  K  Y  S  R  W  L  C  R  W  K  L  R  C  K  K  K  G  R  *  K  R  R  G  S  F  T  S  T  R  L  Y  K  C  C  L  L  L  E  S  *  C  F  R  G  R  S  E  F  Y  C  M  V  F  R  Q  F  Y  F  F  Y  G </second_frame>
            <third_frame>   *  R  L  L  N  *  *  L  L  S  F  G  G  P  L  L  R  Y  N  P  I  K  F  F  T  S  V  Y  V  P  V  P  V  E  M  H  G  I  A  V  S  D  *  S  L  R  F  P  A  V  L  I  L  G  C  S  L  N  G  T  S  V  S  *  E  R  L  N  L  E  E  K  I  G  I  T  D  I  L  W  H  L  F  L  K  G  K  K  W  L  K  M  K  L  P  N  N  H  S  L  I  P  I  L  L  L  F  S  F  L  A  P  K  I  N  P  E  K  P  Q  N  Q  L  L  P  N  *  R  *  D  I  E  L  S  C  F  I  Q  T  K  I  M  D  Y  V  E  F  K  I  S  T  K  V  I  C  V  S  Y  N  F  *  T  S  L  K  T  S  C  T  V  T  S  I  D  L  P  L  T  V  A  K  R  H  L  K  L  R  Q  M  V  M  L  H  K  F  L  V  V  N  L  F  T  V  P  N  I  S  W  L  A  G  R  G  S  C  L  F  *  P  L  Y  F  V  C  A  F  *  H  L  D  M  F  G  P  I  L  T  K  L  L  D  F  G  C  L  D  *  C  V  G  T  L  L  K  K  R  W  S  K  W  G  G  C  S  P  G  V  F  S  L  C  Q  D  T  P  S  F  L  Y  N  Y  F  T  S  T  I  S  C  Y  Y  S  L  H  L  W  E  *  S  L  S  K  K  Y  Y  H  M  Y  L  W  F  *  F  W  *  Q  L  *  H  I  N  F  *  I  V  L  F  L  F  S  L  L  *  L  K  S  V  V  H  C  V  F  T  S  F  F  F  L  S  R  L  *  *  K  I  S  L  Q  I  M  *  Y  R  R  F  W  K  L  V  V  I  S  N  A  S  *  S  C  R  E  L  K  F  T  *  M  L  *  R  N  I  L  T  E  S  I  L  S  P  V  L  K  S  *  L  L  L  G  :  K  G  G  L  L  R  S  P  *  V  L  L  S  H  V  G  K  E  S  C  T  A  N  *  G  *  F  E  L  P  I  F  H  I  C  V  L  L  F  A  N  K  S  C  C  M  Y  *  R  R  C  T  L  C  S  *  K  N  I  N  I  R  Y  A  E  A  Q  M  S  N  I  R  D  G  C  A  D  G  S  *  G  V  K  K  K  E  D  K  K  G  E  V  V  L  H  R  R  D  C  T  N  V  A  F  C  W  R  V  D  V  L  G  E  G  Q  N  F  I  V  W  Y  F  D  N  F  I  S  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28377" stop="28059"/>
                    <exon start="27810" stop="27773"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVLPHVPMVLILVAVVTYKLLNSLVSLLSSLIEISCALCFHIFLLFIQAMMKDQFANYVVQKVLETCSDQQRELIMSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSLSTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32640" PGL_stop="32444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32640" e_stop="32444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32640" e_stop="32444" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32640" stop="32444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32640" stop="32444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</gDNA_template>
            <first_frame> Q  N  S  T  K  Q  H  D  F  L  K  Q  S  E  S  P  Q  F  N  V  A  S  N  A  Q  S  A  K  V  P  Y  S  V  A  V  T  G  S  S  S  S  Y  L  K  G  S  P  T  S  G  L  N  G  G  G  G  V  L  S  Q  Y  P  H  L  D   </first_frame>
            <second_frame>  R  I  V  R  S  S  M  I  S  *  S  N  P  N  P  P  S  L  M  W  L  L  M  L  S  L  R  K  Y  H  I  L  L  L  L  L  A  P  V  V  H  T  S  K  D  P  Q  R  R  D  *  M  V  E  V  A  Y  C  L  S  I  P  I  W  I  </second_frame>
            <third_frame>   E  *  Y  E  A  A  *  F  L  E  A  I  R  I  P  P  V  *  C  G  F  *  C  S  V  C  E  S  T  I  F  C  C  C  Y  W  L  Q  *  F  I  P  Q  R  I  P  N  V  G  I  E  W  W  R  W  R  T  V  S  V  S  P  F  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32640" stop="32446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNSTKQHDFLKQSESPQFNVASNAQSAKVPYSVAVTGSSSSYLKGSPTSGLNGGGGVLSQYPHLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="54979" PGL_stop="56827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54979" e_stop="56827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="54979" e_stop="56827" e_length="1849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54979" stop="55456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54981" stop="55598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55106" stop="55465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55115" stop="55715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55121" stop="55690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55159" stop="55687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55164" stop="55420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55230" stop="55967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55260" stop="55945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55293" stop="55773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55335" stop="56062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55357" stop="55786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55456" stop="56317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55475" stop="55985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55499" stop="56026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55516" stop="56234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55516" stop="56228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55652" stop="56294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55689" stop="56116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55703" stop="56320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55821" stop="56184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55968" stop="56508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56052" stop="56566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56053" stop="56610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56140" stop="56560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56155" stop="56797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56323" stop="56827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56323" stop="56824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56552" stop="56774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</gDNA_template>
            <first_frame> I  *  I  *  N  N  *  L  T  M  K  *  Y  L  P  L  Y  *  Q  A  P  T  R  L  R  V  Y  K  L  S  F  F  S  F  L  L  Y  L  S  R  S  S  T  L  P  P  F  S  S  L  C  A  F  S  F  F  L  L  G  N  L  F  Y  I  L  R  R  A  K  S  E  H  N  L  G  V  L  S  Y  W  I  *  P  G  L  L  G  *  V  L  T  D  L  R  R  L  Q  M  S  S  Y  W  C  Y  R  C  T  R  F  V  R  I  S  V  G  N  D  V  V  C  P  H  C  D  S  G  F  I  E  V  A  E  G  N  I  G  S  P  E  S  R  R  R  F  P  M  W  N  E  R  P  E  S  D  R  S  V  N  M  G  S  R  R  S  R  R  N  R  G  D  R  S  P  F  N  P  V  I  V  L  R  S  P  S  E  A  P  G  E  D  E  A  A  A  A  A  E  E  R  S  Y  E  L  Y  Y  D  D  G  E  G  S  G  L  R  P  L  P  P  T  M  S  E  F  L  M  G  S  G  F  D  R  L  L  D  Q  L  A  Q  I  E  V  N  G  F  G  R  P  E  N  P  P  A  S  K  S  A  I  E  S  M  P  I  I  Q  I  A  S  N  H  V  N  S  E  T  H  C  A  V  C  K  E  A  F  D  L  G  S  E  A  R  E  M  P  C  K  H  I  Y  H  S  D  C  I  L  P  W  L  S  L  R  N  S  C  P  V  C  R  H  E  L  P  T  E  S  T  E  T  T  N  S  D  N  I  S  R  P  R  N  E  D  E  A  M  G  L  T  I  W  R  L  P  G  G  G  F  A  V  G  R  F  S  G  G  R  R  G  A  E  R  E  L  P  V  V  Y  T  E  M  D  G  G  F  N  N  G  V  P  R  R  I  A  W  R  S  R  R  S  N  T  G  R  N  G  N  G  I  S  R  I  F  N  N  F  T  S  F  F  R  R  L  T  P  S  S  Q  H  R  S  L  S  I  H  S  S  S  S  E  S  S  G  S  G  S  G  S  A  V  F  R  S  R  S  V  S  S  S  T  S  I  F  S  R  Y  L  R  R  S  R  R  N  W  V  P  E  E  R  N  G  V  T  R  W  *  L  L  S  R  K  T  P  I  F  N  Y  Y  F  Y  R  A  V  D  *  K  Q  K  T  I  T  P  D  A  K  C  K  A  M  C  D  W  *  S  S  R  L  E  E  E  D  N  N  V  V  L  *  I  I  T  C  *  V  G  R  E  H  *  K  K  R  K  F  G  S  R  A  V  D  *  K  *  K  I  D  G  *  E  S  G  L  Y  G  I  E  K  R  C  H  F  V  G  N  M  *  I  E  K  A  L  I  *  N  S  I  H  F  *  C  H  F  V  E  F  V  A  V  I  I  S  N  R  K  T  I  V  F  F  Y  </first_frame>
            <second_frame>  F  K  Y  K  I  I  N  *  R  *  N  S  I  Y  R  F  T  N  R  L  P  R  V  F  V  F  I  N  S  L  F  S  P  F  F  F  T  F  H  V  L  Q  R  Y  P  H  F  L  L  S  V  L  F  L  F  F  S  *  E  T  F  F  I  F  S  G  E  P  N  R  S  I  I  W  G  F  *  V  I  G  S  N  R  V  Y  W  V  E  F  *  L  I  S  G  D  C  R  C  L  R  T  G  V  I  G  V  Q  G  L  L  E  F  Q  L  E  T  M  L  F  V  L  T  V  I  V  D  L  *  K  L  L  R  E  I  L  G  R  R  N  L  A  G  G  F  P  C  G  T  N  G  Q  S  Q  I  G  V  *  T  W  V  L  D  G  A  G  V  I  G  V  I  D  L  R  L  I  R  L  L  F  F  V  V  H  L  K  H  L  G  R  M  K  L  L  Q  L  Q  R  S  G  V  M  S  F  I  M  M  M  V  K  V  Q  V  S  G  R  C  R  R  R  C  R  S  F  *  W  D  L  G  L  I  G  Y  L  I  S  *  H  R  S  R  *  T  V  L  V  A  R  K  I  H  R  R  R  N  Q  R  L  S  R  C  R  L  F  K  *  L  Q  I  T  *  I  P  R  P  I  A  L  F  V  K  K  L  S  I  *  D  L  K  L  E  K  C  P  V  N  T  S  T  I  P  I  V  S  S  H  G  Y  L  F  E  I  R  A  P  F  A  D  T  N  Y  Q  R  N  Q  L  K  L  Q  T  P  T  T  F  L  D  P  E  T  K  T  R  Q  W  D  *  Q  Y  G  D  F  R  E  V  G  S  P  *  E  D  F  P  V  E  E  E  E  L  R  E  S  F  Q  *  C  I  Q  K  W  T  V  D  L  T  M  G  Y  L  E  E  *  L  G  D  Q  E  E  A  T  Q  V  E  M  A  T  E  *  A  E  F  S  T  T  S  H  H  F  S  G  D  *  H  H  L  L  N  I  D  L  Y  P  Y  I  P  V  V  Q  N  H  P  V  L  V  L  D  L  L  Y  S  G  V  E  V  Y  L  Q  A  L  Q  Y  S  V  G  I  *  E  E  A  E  E  I  G  Y  L  K  N  V  M  E  *  Q  D  G  N  Y  L  V  G  K  R  Q  F  S  I  I  I  F  I  E  Q  S  T  R  S  R  R  R  *  P  P  M  P  S  V  R  Q  C  V  I  G  R  A  V  D  *  K  K  K  T  I  M  S  F  F  K  L  L  P  V  E  W  E  G  S  T  K  K  R  E  S  S  V  L  E  Q  S  T  R  S  R  R  L  M  A  K  R  A  A  Y  M  A  *  R  K  D  A  I  L  L  G  I  C  K  *  R  R  L  *  Y  E  I  Q  Y  I  F  S  V  I  L  L  N  L  *  Q  *  L  *  V  I  E  R  P  L  F  F  F  I </second_frame>
            <third_frame>   L  N  I  K  *  L  I  N  D  E  I  V  F  T  A  L  L  T  G  S  H  A  S  S  C  L  *  T  L  F  F  L  L  S  S  L  P  F  T  F  F  N  A  T  P  I  F  F  S  L  C  F  F  F  F  S  L  R  K  P  F  L  Y  S  P  A  S  Q  I  G  A  *  F  G  G  F  E  L  L  D  L  T  G  F  I  G  L  S  F  D  *  S  P  A  T  A  D  V  F  V  L  V  L  S  V  Y  K  V  C  *  N  F  S  W  K  R  C  C  L  S  S  L  *  *  W  I  Y  R  S  C  *  G  K  Y  W  V  A  G  I  S  P  E  V  S  H  V  E  R  T  A  R  V  R  S  E  C  E  H  G  F  S  T  E  Q  A  *  S  G  *  *  I  S  V  *  S  G  Y  C  S  S  *  S  I  *  S  T  W  G  G  *  S  C  C  S  C  R  G  A  E  L  *  A  L  L  *  *  W  *  R  F  R  S  Q  A  V  A  A  D  D  V  G  V  F  D  G  I  W  V  *  S  V  T  *  S  V  S  T  D  R  G  E  R  F  W  S  P  G  K  S  T  G  V  E  I  S  D  *  V  D  A  D  Y  S  N  S  F  K  S  R  K  F  R  D  P  L  R  C  L  *  R  S  F  R  F  R  I  *  S  S  R  N  A  L  *  T  H  L  P  F  R  L  Y  P  P  M  A  I  S  S  K  F  V  P  R  L  P  T  R  I  T  N  G  I  N  *  N  Y  K  L  R  Q  H  F  *  T  Q  K  R  R  R  G  N  G  I  D  N  M  E  T  S  G  R  W  V  R  R  R  K  I  F  R  W  K  K  R  S  *  E  R  A  S  S  S  V  Y  R  N  G  R  W  I  *  Q  W  G  T  *  K  N  S  L  E  I  K  K  K  Q  H  R  S  K  W  Q  R  N  K  P  N  F  Q  Q  L  H  I  I  F  P  A  I  N  T  I  F  S  T  S  I  S  I  H  T  F  Q  *  F  R  I  I  R  F  W  F  W  I  C  C  I  Q  E  S  K  C  I  F  K  H  F  N  I  Q  *  V  F  E  K  K  Q  K  K  L  G  T  *  R  T  *  W  S  N  K  M  V  I  T  *  S  E  N  A  N  F  Q  L  L  F  L  *  S  S  R  L  E  A  E  D  D  N  P  R  C  Q  V  *  G  N  V  *  L  V  E  Q  S  T  R  R  R  R  Q  *  C  R  S  L  N  Y  Y  L  L  S  G  K  G  A  L  K  K  E  K  V  R  F  *  S  S  R  L  E  V  E  D  *  W  L  R  E  R  P  I  W  H  R  E  K  M  P  F  C  W  E  Y  V  N  R  E  G  F  D  M  K  F  N  T  F  L  V  S  F  C  *  I  C  S  S  N  Y  K  *  *  K  D  H  C  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55243" stop="56427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTDLRRLQMSSYWCYRCTRFVRISVGNDVVCPHCDSGFIEVAEGNIGSPESRRRFPMWNERPESDRSVNMGSRRSRRNRGDRSPFNPVIVLRSPSEAPGEDEAAAAAEERSYELYYDDGEGSGLRPLPPTMSEFLMGSGFDRLLDQLAQIEVNGFGRPENPPASKSAIESMPIIQIASNHVNSETHCAVCKEAFDLGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTESTETTNSDNISRPRNEDEAMGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGVPRRIAWRSRRSNTGRNGNGISRIFNNFTSFFRRLTPSSQHRSLSIHSSSSESSGSGSGSAVFRSRSVSSSTSIFSRYLRRSRRNWVPEERNGVTRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54979" e_stop="55858"/>
            <exon e_start="56116" e_stop="56827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.547" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="54979" e_stop="55858" e_length="880"/>
          </exon>
          <intron i_serial="1" don_prob="0.547" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55859" i_stop="56115" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="56116" e_stop="56827" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54979" stop="55456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54981" stop="55598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55106" stop="55465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55115" stop="55715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55121" stop="55690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55159" stop="55687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55164" stop="55420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55293" stop="55773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55357" stop="55786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55481" stop="55858"/>
              <exon start="56116" stop="56429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56140" stop="56560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56155" stop="56797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56323" stop="56827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56323" stop="56824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56552" stop="56774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCT : GGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</gDNA_template>
            <first_frame> I  *  I  *  N  N  *  L  T  M  K  *  Y  L  P  L  Y  *  Q  A  P  T  R  L  R  V  Y  K  L  S  F  F  S  F  L  L  Y  L  S  R  S  S  T  L  P  P  F  S  S  L  C  A  F  S  F  F  L  L  G  N  L  F  Y  I  L  R  R  A  K  S  E  H  N  L  G  V  L  S  Y  W  I  *  P  G  L  L  G  *  V  L  T  D  L  R  R  L  Q  M  S  S  Y  W  C  Y  R  C  T  R  F  V  R  I  S  V  G  N  D  V  V  C  P  H  C  D  S  G  F  I  E  V  A  E  G  N  I  G  S  P  E  S  R  R  R  F  P  M  W  N  E  R  P  E  S  D  R  S  V  N  M  G  S  R  R  S  R  R  N  R  G  D  R  S  P  F  N  P  V  I  V  L  R  S  P  S  E  A  P  G  E  D  E  A  A  A  A  A  E  E  R  S  Y  E  L  Y  Y  D  D  G  E  G  S  G  L  R  P  L  P  P  T  M  S  E  F  L  M  G  S  G  F  D  R  L  L  D  Q  L  A  Q  I  E  V  N  G  F  G  R  P  E  N  P  P  A  S  K  S  A  I  E  S  M  P  I  I  Q  I  A  S  N  H  V  N  S  E  T  H  C  A  V  C  K  E  A  F  D  L  G  S  E  A  R  E  M  P   : W  W  I  *  Q  W  G  T  *  K  N  S  L  E  I  K  K  K  Q  H  R  S  K  W  Q  R  N  K  P  N  F  Q  Q  L  H  I  I  F  P  A  I  N  T  I  F  S  T  S  I  S  I  H  T  F  Q  *  F  R  I  I  R  F  W  F  W  I  C  C  I  Q  E  S  K  C  I  F  K  H  F  N  I  Q  *  V  F  E  K  K  Q  K  K  L  G  T  *  R  T  *  W  S  N  K  M  V  I  T  *  S  E  N  A  N  F  Q  L  L  F  L  *  S  S  R  L  E  A  E  D  D  N  P  R  C  Q  V  *  G  N  V  *  L  V  E  Q  S  T  R  R  R  R  Q  *  C  R  S  L  N  Y  Y  L  L  S  G  K  G  A  L  K  K  E  K  V  R  F  *  S  S  R  L  E  V  E  D  *  W  L  R  E  R  P  I  W  H  R  E  K  M  P  F  C  W  E  Y  V  N  R  E  G  F  D  M  K  F  N  T  F  L  V  S  F  C  *  I  C  S  S  N  Y  K  *  *  K  D  H  C  F  F  L   </first_frame>
            <second_frame>  F  K  Y  K  I  I  N  *  R  *  N  S  I  Y  R  F  T  N  R  L  P  R  V  F  V  F  I  N  S  L  F  S  P  F  F  F  T  F  H  V  L  Q  R  Y  P  H  F  L  L  S  V  L  F  L  F  F  S  *  E  T  F  F  I  F  S  G  E  P  N  R  S  I  I  W  G  F  *  V  I  G  S  N  R  V  Y  W  V  E  F  *  L  I  S  G  D  C  R  C  L  R  T  G  V  I  G  V  Q  G  L  L  E  F  Q  L  E  T  M  L  F  V  L  T  V  I  V  D  L  *  K  L  L  R  E  I  L  G  R  R  N  L  A  G  G  F  P  C  G  T  N  G  Q  S  Q  I  G  V  *  T  W  V  L  D  G  A  G  V  I  G  V  I  D  L  R  L  I  R  L  L  F  F  V  V  H  L  K  H  L  G  R  M  K  L  L  Q  L  Q  R  S  G  V  M  S  F  I  M  M  M  V  K  V  Q  V  S  G  R  C  R  R  R  C  R  S  F  *  W  D  L  G  L  I  G  Y  L  I  S  *  H  R  S  R  *  T  V  L  V  A  R  K  I  H  R  R  R  N  Q  R  L  S  R  C  R  L  F  K  *  L  Q  I  T  *  I  P  R  P  I  A  L  F  V  K  K  L  S  I  *  D  L  K  L  E  K  C  P  :  G  G  F  N  N  G  V  P  R  R  I  A  W  R  S  R  R  S  N  T  G  R  N  G  N  G  I  S  R  I  F  N  N  F  T  S  F  F  R  R  L  T  P  S  S  Q  H  R  S  L  S  I  H  S  S  S  S  E  S  S  G  S  G  S  G  S  A  V  F  R  S  R  S  V  S  S  S  T  S  I  F  S  R  Y  L  R  R  S  R  R  N  W  V  P  E  E  R  N  G  V  T  R  W  *  L  L  S  R  K  T  P  I  F  N  Y  Y  F  Y  R  A  V  D  *  K  Q  K  T  I  T  P  D  A  K  C  K  A  M  C  D  W  *  S  S  R  L  E  E  E  D  N  N  V  V  L  *  I  I  T  C  *  V  G  R  E  H  *  K  K  R  K  F  G  S  R  A  V  D  *  K  *  K  I  D  G  *  E  S  G  L  Y  G  I  E  K  R  C  H  F  V  G  N  M  *  I  E  K  A  L  I  *  N  S  I  H  F  *  C  H  F  V  E  F  V  A  V  I  I  S  N  R  K  T  I  V  F  F  Y  </second_frame>
            <third_frame>   L  N  I  K  *  L  I  N  D  E  I  V  F  T  A  L  L  T  G  S  H  A  S  S  C  L  *  T  L  F  F  L  L  S  S  L  P  F  T  F  F  N  A  T  P  I  F  F  S  L  C  F  F  F  F  S  L  R  K  P  F  L  Y  S  P  A  S  Q  I  G  A  *  F  G  G  F  E  L  L  D  L  T  G  F  I  G  L  S  F  D  *  S  P  A  T  A  D  V  F  V  L  V  L  S  V  Y  K  V  C  *  N  F  S  W  K  R  C  C  L  S  S  L  *  *  W  I  Y  R  S  C  *  G  K  Y  W  V  A  G  I  S  P  E  V  S  H  V  E  R  T  A  R  V  R  S  E  C  E  H  G  F  S  T  E  Q  A  *  S  G  *  *  I  S  V  *  S  G  Y  C  S  S  *  S  I  *  S  T  W  G  G  *  S  C  C  S  C  R  G  A  E  L  *  A  L  L  *  *  W  *  R  F  R  S  Q  A  V  A  A  D  D  V  G  V  F  D  G  I  W  V  *  S  V  T  *  S  V  S  T  D  R  G  E  R  F  W  S  P  G  K  S  T  G  V  E  I  S  D  *  V  D  A  D  Y  S  N  S  F  K  S  R  K  F  R  D  P  L  R  C  L  *  R  S  F  R  F  R  I  *  S  S  R  N  A  L :   V  D  L  T  M  G  Y  L  E  E  *  L  G  D  Q  E  E  A  T  Q  V  E  M  A  T  E  *  A  E  F  S  T  T  S  H  H  F  S  G  D  *  H  H  L  L  N  I  D  L  Y  P  Y  I  P  V  V  Q  N  H  P  V  L  V  L  D  L  L  Y  S  G  V  E  V  Y  L  Q  A  L  Q  Y  S  V  G  I  *  E  E  A  E  E  I  G  Y  L  K  N  V  M  E  *  Q  D  G  N  Y  L  V  G  K  R  Q  F  S  I  I  I  F  I  E  Q  S  T  R  S  R  R  R  *  P  P  M  P  S  V  R  Q  C  V  I  G  R  A  V  D  *  K  K  K  T  I  M  S  F  F  K  L  L  P  V  E  W  E  G  S  T  K  K  R  E  S  S  V  L  E  Q  S  T  R  S  R  R  L  M  A  K  R  A  A  Y  M  A  *  R  K  D  A  I  L  L  G  I  C  K  *  R  R  L  *  Y  E  I  Q  Y  I  F  S  V  I  L  L  N  L  *  Q  *  L  *  V  I  E  R  P  L  F  F  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55243" stop="55858"/>
                    <exon start="56116" stop="56126"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTDLRRLQMSSYWCYRCTRFVRISVGNDVVCPHCDSGFIEVAEGNIGSPESRRRFPMWNERPESDRSVNMGSRRSRRNRGDRSPFNPVIVLRSPSEAPGEDEAAAAAEERSYELYYDDGEGSGLRPLPPTMSEFLMGSGFDRLLDQLAQIEVNGFGRPENPPASKSAIESMPIIQIASNHVNSETHCAVCKEAFDLGSEAREMPWWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="68651" PGL_stop="69017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68651" e_stop="69017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68651" e_stop="69017" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68651" stop="69017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTAGGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCTATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCATGGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCAAAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAGCACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAACATTTTA</gDNA_template>
            <first_frame> K  E  G  F  R  K  C  T  N  E  H  T  L  Y  I  K  R  E  C  V  G  V  L  M  V  C  L  Y  V  D  D  L  I  Y  T  G  S  N  M  S  M  I  K  N  F  K  K  S  M  M  V  E  F  D  T  S  D  L  R  H  G  A  L  F  P  W  F  R  S  E  S  I  R  *  W  Y  F  C  F  S  K  E  I  C  A  R  Y  S  G  Q  I  P  D  E  K  *  Q  H  C  E  H  T  N  G  E  G  S  E  A  R  Q  R  T  *  R  E  K  S  G  Q  H  F  </first_frame>
            <second_frame>  R  R  D  F  E  S  V  Q  M  N  I  L  F  T  *  K  E  N  V  *  G  S  *  W  C  V  Y  M  W  M  T  *  F  I  P  E  V  I  C  L  *  L  K  T  L  R  S  P  *  W  L  S  L  T  R  Q  I  *  G  M  V  H  Y  F  L  G  L  E  V  N  Q  S  A  D  G  I  F  V  S  Q  K  K  Y  V  Q  D  I  L  D  R  F  Q  M  K  N  N  N  T  V  S  T  P  M  E  K  G  P  K  L  V  K  E  P  E  G  R  K  V  D  N  I  L </second_frame>
            <third_frame>   G  G  I  S  K  V  Y  K  *  T  Y  S  L  H  K  K  R  M  C  R  G  L  N  G  V  F  I  C  G  *  L  N  L  Y  R  K  *  Y  V  Y  D  *  K  L  *  E  V  H  D  G  *  V  *  H  V  R  F  E  A  W  C  I  I  S  L  V  *  K  *  I  N  P  L  M  V  F  L  F  L  K  R  N  M  C  K  I  F  W  T  D  S  R  *  K  I  T  T  L  *  A  H  Q  W  R  R  V  R  S  S  S  K  N  L  K  G  E  K  W  T  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68651" stop="68872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEGFRKCTNEHTLYIKRECVGVLMVCLYVDDLIYTGSNMSMIKNFKKSMMVEFDTSDLRHGALFPWFRSESIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68826" stop="69017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMVHYFLGLEVNQSADGIFVSQKKYVQDILDRFQMKNNNTVSTPMEKGPKLVKEPEGRKVDNIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="90452" PGL_stop="93094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90452" e_stop="90828"/>
            <exon e_start="91087" e_stop="91320"/>
            <exon e_start="92445" e_stop="93094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90452" e_stop="90828" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90829" i_stop="91086" i_length="258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91087" e_stop="91320" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="91321" i_stop="92444" i_length="1124"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="92445" e_stop="93094" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90452" stop="90828"/>
              <exon start="91087" stop="91320"/>
              <exon start="92445" stop="92525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90452" stop="90828"/>
              <exon start="91087" stop="91320"/>
              <exon start="92445" stop="92504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90452" stop="90828"/>
              <exon start="91087" stop="91160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91133" stop="91320"/>
              <exon start="92445" stop="92984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91139" stop="91320"/>
              <exon start="92445" stop="93010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91264" stop="91320"/>
              <exon start="92445" stop="93094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCATAAAAAAGTCAACTACTCTGTTAACACTATTCCTGTTTTTGTTCTTGAAATTTTTAATTATCAATGGTCATGGTGGAGCTGATGATGATGATGAACATGATTCAAATGGAGATACAAATACAAATTTACGCGCGAAAGGATTGATTCTTGTTAAAATTTATTGCTTGATCATACTCTTTGTAACTACATTTGTTGGTGGCGTATCGCCTTATTTCTATCGATGGAATGAGGGGTTTCTCTTGTTAGGAACTCAATTTGCTGGTGGTGTTTTCTTAGGGACTTCATTGATGCATTTTTTGAGTGATTCTGCTACAACTTTTGGTGTACTTACAGAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTCTGCAG : GTTATCTTCTCACTATGTTTAGTGATTGCATTATTATGTTTGTGACAAAGGGGGGTGTAAATGAATCAAGTGAGTCCAAAGTTGAAGTGGATGAAGAAGGAAGGTCAACTAATATTGATGAGGGACATGGAACAAATCCATTTCTAAAGACAACTTCACTTGGGGATACAATACTTCTCATTCTTGCATTGTGTTTCCACTCTATTTTTGAAGGCATTGCTGTTGGAGTATCAG : CTTCAAAGGGAGAGGCATGGAGAAACCTATGGACAATTTCATTGCACAAAATATTTGCAGCCATTGCAATGGGAATTGCACTTTTAAGAATGATACCAAAAAGGCCATTTCTACTTACTTGTGCTTACTCTTTTGCCTTTGCAATTTCAAGCCCTATAGGTGTGGGTATAGGAATTGCAATTGATGCTACTAGTGAAGGCCGTACAGCTGATTGGACTTATGCTATTTCAATGGCAATTGCTTGTGGGGTTTTTATTTATGTGGCAATTAATCACCTAATTGCAAAAGGGTTTAAACCACAAAATAAATGTTATTTTGATACTCAATTCTTCAAGTTTGTTGCTGTCCTTCTAGGTGTTGGGGTGATTGCTGTTGTCATGATATGGGACTAAATTAAACTACCTTGTTCAGACTCTTCAAAATGTCGACAATTGTATGTTGCGTCCTTCAAAAATAGTGCTTTTTTTTAAGACCTGATACGGTGTGTGAACATTATTGGAGAGTTCGTGATGAACTATGTAAACATTCATTTTTTGAATTTTACATGGGGTTTTGCTAATCTTTATTGTTTTGTTTCTTTTGAGATTGAATTATGCGTGCATGCATTTTTTTTTTCCAGTACAACATTGGTTATTGATTTTATATAAGCA</gDNA_template>
            <first_frame> F  H  K  K  V  N  Y  S  V  N  T  I  P  V  F  V  L  E  I  F  N  Y  Q  W  S  W  W  S  *  *  *  *  *  T  *  F  K  W  R  Y  K  Y  K  F  T  R  E  R  I  D  S  C  *  N  L  L  L  D  H  T  L  C  N  Y  I  C  W  W  R  I  A  L  F  L  S  M  E  *  G  V  S  L  V  R  N  S  I  C  W  W  C  F  L  R  D  F  I  D  A  F  F  E  *  F  C  Y  N  F  W  C  T  Y  R  K  R  V  P  F  C  L  H  V  G  F  C  R :   L  S  S  H  Y  V  *  *  L  H  Y  Y  V  C  D  K  G  G  C  K  *  I  K  *  V  Q  S  *  S  G  *  R  R  K  V  N  *  Y  *  *  G  T  W  N  K  S  I  S  K  D  N  F  T  W  G  Y  N  T  S  H  S  C  I  V  F  P  L  Y  F  *  R  H  C  C  W  S  I  S :   F  K  G  R  G  M  E  K  P  M  D  N  F  I  A  Q  N  I  C  S  H  C  N  G  N  C  T  F  K  N  D  T  K  K  A  I  S  T  Y  L  C  L  L  F  C  L  C  N  F  K  P  Y  R  C  G  Y  R  N  C  N  *  C  Y  *  *  R  P  Y  S  *  L  D  L  C  Y  F  N  G  N  C  L  W  G  F  Y  L  C  G  N  *  S  P  N  C  K  R  V  *  T  T  K  *  M  L  F  *  Y  S  I  L  Q  V  C  C  C  P  S  R  C  W  G  D  C  C  C  H  D  M  G  L  N  *  T  T  L  F  R  L  F  K  M  S  T  I  V  C  C  V  L  Q  K  *  C  F  F  L  R  P  D  T  V  C  E  H  Y  W  R  V  R  D  E  L  C  K  H  S  F  F  E  F  Y  M  G  F  C  *  S  L  L  F  C  F  F  *  D  *  I  M  R  A  C  I  F  F  F  Q  Y  N  I  G  Y  *  F  Y  I  S  </first_frame>
            <second_frame>  S  I  K  K  S  T  T  L  L  T  L  F  L  F  L  F  L  K  F  L  I  I  N  G  H  G  G  A  D  D  D  D  E  H  D  S  N  G  D  T  N  T  N  L  R  A  K  G  L  I  L  V  K  I  Y  C  L  I  I  L  F  V  T  T  F  V  G  G  V  S  P  Y  F  Y  R  W  N  E  G  F  L  L  L  G  T  Q  F  A  G  G  V  F  L  G  T  S  L  M  H  F  L  S  D  S  A  T  T  F  G  V  L  T  E  K  E  Y  P  F  A  F  M  L  A  S  A   : G  Y  L  L  T  M  F  S  D  C  I  I  M  F  V  T  K  G  G  V  N  E  S  S  E  S  K  V  E  V  D  E  E  G  R  S  T  N  I  D  E  G  H  G  T  N  P  F  L  K  T  T  S  L  G  D  T  I  L  L  I  L  A  L  C  F  H  S  I  F  E  G  I  A  V  G  V  S   : A  S  K  G  E  A  W  R  N  L  W  T  I  S  L  H  K  I  F  A  A  I  A  M  G  I  A  L  L  R  M  I  P  K  R  P  F  L  L  T  C  A  Y  S  F  A  F  A  I  S  S  P  I  G  V  G  I  G  I  A  I  D  A  T  S  E  G  R  T  A  D  W  T  Y  A  I  S  M  A  I  A  C  G  V  F  I  Y  V  A  I  N  H  L  I  A  K  G  F  K  P  Q  N  K  C  Y  F  D  T  Q  F  F  K  F  V  A  V  L  L  G  V  G  V  I  A  V  V  M  I  W  D  *  I  K  L  P  C  S  D  S  S  K  C  R  Q  L  Y  V  A  S  F  K  N  S  A  F  F  *  D  L  I  R  C  V  N  I  I  G  E  F  V  M  N  Y  V  N  I  H  F  L  N  F  T  W  G  F  A  N  L  Y  C  F  V  S  F  E  I  E  L  C  V  H  A  F  F  F  S  S  T  T  L  V  I  D  F  I  *  A </second_frame>
            <third_frame>   P  *  K  S  Q  L  L  C  *  H  Y  S  C  F  C  S  *  N  F  *  L  S  M  V  M  V  E  L  M  M  M  M  N  M  I  Q  M  E  I  Q  I  Q  I  Y  A  R  K  D  *  F  L  L  K  F  I  A  *  S  Y  S  L  *  L  H  L  L  V  A  Y  R  L  I  S  I  D  G  M  R  G  F  S  C  *  E  L  N  L  L  V  V  F  S  *  G  L  H  *  C  I  F  *  V  I  L  L  Q  L  L  V  Y  L  Q  K  K  S  T  L  L  P  S  C  W  L  L  Q  :  V  I  F  S  L  C  L  V  I  A  L  L  C  L  *  Q  R  G  V  *  M  N  Q  V  S  P  K  L  K  W  M  K  K  E  G  Q  L  I  L  M  R  D  M  E  Q  I  H  F  *  R  Q  L  H  L  G  I  Q  Y  F  S  F  L  H  C  V  S  T  L  F  L  K  A  L  L  L  E  Y  Q  :  L  Q  R  E  R  H  G  E  T  Y  G  Q  F  H  C  T  K  Y  L  Q  P  L  Q  W  E  L  H  F  *  E  *  Y  Q  K  G  H  F  Y  L  L  V  L  T  L  L  P  L  Q  F  Q  A  L  *  V  W  V  *  E  L  Q  L  M  L  L  V  K  A  V  Q  L  I  G  L  M  L  F  Q  W  Q  L  L  V  G  F  L  F  M  W  Q  L  I  T  *  L  Q  K  G  L  N  H  K  I  N  V  I  L  I  L  N  S  S  S  L  L  L  S  F  *  V  L  G  *  L  L  L  S  *  Y  G  T  K  L  N  Y  L  V  Q  T  L  Q  N  V  D  N  C  M  L  R  P  S  K  I  V  L  F  F  K  T  *  Y  G  V  *  T  L  L  E  S  S  *  *  T  M  *  T  F  I  F  *  I  L  H  G  V  L  L  I  F  I  V  L  F  L  L  R  L  N  Y  A  C  M  H  F  F  F  P  V  Q  H  W  L  L  I  L  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0147H20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90453" stop="90828"/>
                    <exon start="91087" stop="91320"/>
                    <exon start="92445" stop="92836"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIKKSTTLLTLFLFLFLKFLIINGHGGADDDDEHDSNGDTNTNLRAKGLILVKIYCLIILFVTTFVGGVSPYFYRWNEGFLLLGTQFAGGVFLGTSLMHFLSDSATTFGVLTEKEYPFAFMLASAGYLLTMFSDCIIMFVTKGGVNESSESKVEVDEEGRSTNIDEGHGTNPFLKTTSLGDTILLILALCFHSIFEGIAVGVSASKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTCAYSFAFAISSPIGVGIGIAIDATSEGRTADWTYAISMAIACGVFIYVAINHLIAKGFKPQNKCYFDTQFFKFVAVLLGVGVIAVVMIWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 130 chains have been computed
$ 
$ memory statistics:
$ 187984 bytes spliced alignments in total
$ 88 spliced alignments have been stored
$ 2136 bytes was the average size of a spliced alignment
$ 14536 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2076 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 142 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:59:18
-->
