<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:33:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373015" ref_strand="+" ref_description="SGN-E373015 [TUS-32-L9]">
      <seq>ttttttcttcctcctccttctctaatcaccagccaatgcattaacccatatttcaatggcaggttctgaatttcctcacgcatatccacaaacgccaagtatcgatacttccgaaacgctatttcaacgacgtagccgttgtttctgcttcccatctttccgttctccgaatcaattaacaaaatacgttaagtttgactggtggcataggttacgtagcggtgcggttaaggagggatctgtatgggctaaaggaatcaacgctttgaagaagcttcgtgaatggtcggagatcgtcgccggacctagatggaagactttcatccgtcggttccatcggaacaaaagcggtaataggaatgcgaaattccaatacgatcctttgagttactcactgaacttcgatgaaggacgagggaataacggagaagaggaggaggaattggtacttcggaatttctcgacgagatacgcatcgattccggcgtctagtaacttgggcaaagatgggcccagtttcgtttgagttgcaaacgcaagtactatactatttgacagtgattggactggaccgatcgataaatttatattatcgtcaatcataaattagtctcagcgtataatttcgagacaattcaatccccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1945" stop="3191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2245" g_stop="2891" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E373015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2245" e_stop="2891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTT</genome_strand>
        <mrna_strand>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293977" ref_strand="+" ref_description="SGN-E293977 [cLET-13-J21]">
      <seq>ttttttcttcctcctccttctctaatcaccagccaatgcattaacccatatttcaatggcaggttctgaatttcctcacgcatatccacaaacgccaagtatcgatacttccgaaacgctatttcaacgacgtagccgttgtttctgcttcccatctttccgttctccgaatcaattaacaaaatacgttaagtttgactggtggcataggttacgtagcggtgcggttaaggagggatctgtatgggctaaaggaatcaacgctttgaagaagcttcgtgaatggtcggagatcgtcgccggacctagatggaagactttcatccgtcggttccatcggaacaaaagcggtaataggaatgcgaaattccaatacgatcctttgagttactcactgaacttcgatgaaggacgagggaataacggagaagaggaggaggaattggtacttcggaatttctcgacgagatacgcatcgattccggcgtctagtaacttgggcaaagatgggcccagtttcgtttgagttgcaaacgcaagtactatactatttgacagtgattggactggaccgatcgataaatttatattatcgtcaatcataaattagtctcagcgtataatttcgagacaattcaatccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1945" stop="3189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2245" g_stop="2889" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E293977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2245" e_stop="2889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCC</genome_strand>
        <mrna_strand>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373014" ref_strand="+" ref_description="SGN-E373014 [TUS-32-L9](-)">
      <seq>tcaattaacaaaatacgttaagtttgactggtggcataggttacgtagcggtgcggttaaggagggatctgtatgggctaaaggaatcaacgctttgaagaagcttcgtgaatggtcggagatcgtcgccggacctagatggaagactttcatccgtcggttccatcggaacaaaagcggtaataggaatgcgaaattccaatacgatcctttgagttactcactgaacttcgatgaaggacgagggaataacggagaagaggaggaggaattggtacttcggaatttctcgacgagatacgcatcgattccggcgtctagtaacttgggcaaagatgggcccagtttcgtttgagttgcaaacgcaagtactatactatttgacagtgattggactggaccgatcgataaatttatattatcgtcaatcataaattagtctcagcgtataatttcgagacaattcaatcccccttacagttcagtagtggggcaaagaaaacaacagctcatcataaaagataagttttctaccaacaaaaaaaatattattgtggttggtcttatttgtctaatgtctttttcgttgtttaatttaatttacttctcttgtctctacttgtttttgtctttatgcactgtaaatacaatatccattttttttgtgtgataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2116" stop="3388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2416" g_stop="3087" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="685"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E373014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2416" e_stop="3087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTTACAGTTCAGTAGTGGGGCAAAGAAAACAACAGCTCATCATAAAAGATAAGTTTTCTACCAACAAAAAAAATATTATTGTGGTTGGTCTTATTTGTCTAATGTCTTTTTCGTTGTTTAATTTAATTTACTTCTCTTGTCTCTACTTGTTTTTGTCTTTATGCACTGTAAATACAATATCCATTTTTTTTGTGTGATA</genome_strand>
        <mrna_strand>TCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTTACAGTTCAGTAGTGGGGCAAAGAAAACAACAGCTCATCATAAAAGATAAGTTTTCTACCAACAAAAAAAATATTATTGTGGTTGGTCTTATTTGTCTAATGTCTTTTTCGTTGTTTAATTTAATTTACTTCTCTTGTCTCTACTTGTTTTTGTCTTTATGCACTGTAAATACAATATCCATTTTTTTTGTGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229267" ref_strand="+" ref_description="SGN-E229267 [cLEL-29-J20](-)">
      <seq>gtaggaatgcaaaaaaacctgcaacttggcgatcttgaagttgtcaaaggatggactatggtgggctcctcacaagtatcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtccccaaccactatttctctcaatgtatgaaaggaaggaggatttcaatgggtttgtgagcacttttgtcaaccgtattgtctgggtggagacagatgagtcttccctctgtaaatattttaactgttggaaggcttgagatctgcaacacccggcaactgcggataagttgtcttatcgttggccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttctatgttctttgttgctaatgatctttcttgctccctactttcttggctgttctctcctcttttttggcaattacataagtataaagaggttgacaccaaattttggtactaaagtgtccacctgccatgcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6855" stop="5151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6555" g_stop="6516" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5451" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="508" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E229267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6555" e_stop="6516"/>
          <exon e_start="5918" e_stop="5451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</genome_strand>
        <mrna_strand>GTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228595" ref_strand="+" ref_description="SGN-E228595 [cLEL-29-J20](-)">
      <seq>agtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtcccccaaccactatttctctcaatgtatgaaaggaaggaggatttcaatgggtttgtgagcacttttgtcaaccgtattgtctgggtggagacagatgagtcttccctctgtaaatattttaactgttggaaggcttgagatctgcaacacccggcaactgcggataagttgtcttatcgttggccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttctatgttctttgttgctaatgatctttcttgctccctactttcttggctgttctctcctcttttttggcaattacataagtataaagaggttgacaccaaattttggtactaaagtgtccacctgccatgcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6171" stop="5151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5871" g_stop="5451" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E228595" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5871" e_stop="5451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGT-CCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</genome_strand>
        <mrna_strand>AGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421761" ref_strand="-" ref_description="SGN-E421761 [STM-33-K18]">
      <seq>atgctaacagcaatggagccacagaccacaacagaaaacggagccggcaaggtctggatttgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtatcaaggcaactggacgagcatgggaggatgtatcctgtagctgggagtctactgaagaggaaggaacccgagggaggatgggacagtgagagctacaggttcaagcaatcaccatggcagtaggaatgcaaaaaaactgcaacttggcgatcttcaagttatcaaaggatggactatggtgggctcctcaaaagtgtcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtctccaaccaccatttctttcaatgtatgaaaggaaggaggatttcaatcggtttgtgagcacttttgtcagccgtattgtctgggtggacacagacgagtcttccctctgtaaatattttaactgttggaaggcttgaaatctgcaacacccggcaactgcggataagttgtcttatccttgaccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttctatgttctttgttgctaatgatatttctttctcccaactttcttggctgttctctcctcttttttggcaattacataaatataaagaggaaagacaccaaattttggttctaaaaaagattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7093" stop="5175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6793" g_stop="6516" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5475" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="722" r_length="445" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E421761" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421761" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6793" e_stop="6516"/>
          <exon e_start="5918" e_stop="5475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGG-TTGACACCAAATTTTGGTACTAAA</genome_strand>
        <mrna_strand>ATGCTAACAGCAATGGAGCCACAGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATTTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTATCAAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGGAGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGCTACAGGTTCAAGCAATCACCATGGCAGTAGGAATGCAAAAAAA-CTGCAACTTGGCGATCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGGATGGACTATGGTGGGCTCCTCAAAAGTGTCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCTCCAACCACCATTTCTTTCAATGTATGAAAGGAAGGAGGATTTCAATCGGTTTGTGAGCACTTTTGTCAGCCGTATTGTCTGGGTGGACACAGACGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAAATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCCTTGACCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATATTTCTTTCTCCCAACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAATATAAAGAGGAAAGACACCAAATTTTGGTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588533" ref_strand="+" ref_description="SGN-E588533 [42087]">
      <seq>ctggatttgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtatcaaggcaactggacgagcatgggaggatgtattctgtagctgggagtctactgaagaggaaggaacccgagggaggatgggacagtgagagctacaggttcaagcaatcaccgtggcagtaggaatgcaaaaaaactgcaacttggcgatcttcaagttatcaaaggatggactatggtgggctcctcaaaagtgtcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtctccaaccaccatttctttcaatgtatgaaaggaaggaggatttcaatcagtttgtgagcacttttgtcagccgtattgtctgggtggacacagacgagtcttccctctgtaaatattttaactgttggaaggcttgaaatctgcaacacccggcaactgcggataagttgtcttatccttgaccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttctatgttctttgttgctaatgatatttctttctcccaactttcttggctgttctctcctcttttttggcaattacataaatataaagaggttgacaccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7040" stop="5188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6740" g_stop="6516" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5484" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="659" r_length="435" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E588533" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6740" e_stop="6516"/>
          <exon e_start="5918" e_stop="5484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTT</genome_strand>
        <mrna_strand>CTGGATTTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTATCAAGGCAACTGGACGAGCATGGGAGGATGTATTCTGTAGCTGGGAGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGCTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAA-CTGCAACTTGGCGATCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGGATGGACTATGGTGGGCTCCTCAAAAGTGTCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCTCCAACCACCATTTCTTTCAATGTATGAAAGGAAGGAGGATTTCAATCAGTTTGTGAGCACTTTTGTCAGCCGTATTGTCTGGGTGGACACAGACGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAAATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCCTTGACCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATATTTCTTTCTCCCAACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAATATAAAGAGGTTGACACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621652" ref_strand="+" ref_description="SGN-E621652 [72010]">
      <seq>ggacagtgagagctacaggttcaagcaatcaccgtggcagtaggaatgcaaaaaaactgcaacttggcgatcttcaagttatcaaaggatggactatggtgggctcctcaaaagtgtcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtctccaaccaccatttctttcaatgtatgaaaggaaggaggatttcaatcagtttgtgagcacttttgtcagccgtattgtctgggtggacacagacgagtcttccctctgtaaatattttaactgttggaaggcttgaaatctgcaacacccggcaactgcggataagttgtcttatccttgaccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttctatgttctttgttgctaatgatatttctttctcccaactttcttggctgttctctcctcttttttggcaattacataaatataaagaggttgacaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6894" stop="5189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6594" g_stop="6516" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5489" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="508" r_length="430" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E621652" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6594" e_stop="6516"/>
          <exon e_start="5918" e_stop="5489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAA</genome_strand>
        <mrna_strand>GGACAGTGAGAGCTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAA-CTGCAACTTGGCGATCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGGATGGACTATGGTGGGCTCCTCAAAAGTGTCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCTCCAACCACCATTTCTTTCAATGTATGAAAGGAAGGAGGATTTCAATCAGTTTGTGAGCACTTTTGTCAGCCGTATTGTCTGGGTGGACACAGACGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAAATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCCTTGACCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATATTTCTTTCTCCCAACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAATATAAAGAGGTTGACACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602878" ref_strand="+" ref_description="SGN-E602878 [55953]">
      <seq>gttcccttttggaaccactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccacctatgaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatgtggtttcccttcccgatgctaacagcaatggagccacagaccacaacagaaaacggagccggcaaggtctggatttgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtatcaaggcaactggacgagcatgggaggatgtatcctgtagctgggagtctactgaagaggaaggaacccgagggaggatgggacagtgagagctacaggttcaagcaatcaccatggcagtaggaatgcaaaaaaactgcaacttggcgatcttcaagttatcaaaggatggactatggtgggctcctcaaaagtgtcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtctccaaccaccatttctttcaatgtatgagaggaaggaggatttcaatcggtttgtgagcacttttgtcagccgtattgtctgggtggacacagacgagtcttccctctgtaaaatattttaacctgttggaaggcttgaaatctgcaacacccggcaactgcggataagttgtcttatccttggaccangatattgccagtggaggttggattctggacagagtacaatggaattgcttctatgtccttgtggctaatgatattctttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7263" stop="5254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6963" g_stop="6516" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5554" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="812" r_length="365" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E602878" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6963" e_stop="6516"/>
          <exon e_start="5918" e_stop="5554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGT-AAATATTTTAA-CTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGG-CCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCC</genome_strand>
        <mrna_strand>GTTCCCTTTTGGAACCACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCACCTATGAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATGTGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACAGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATTTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTATCAAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGGAGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGCTACAGGTTCAAGCAATCACCATGGCAGTAGGAATGCAAAAAAA-CTGCAACTTGGCGATCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGGATGGACTATGGTGGGCTCCTCAAAAGTGTCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCTCCAACCACCATTTCTTTCAATGTATGAGAGGAAGGAGGATTTCAATCGGTTTGTGAGCACTTTTGTCAGCCGTATTGTCTGGGTGGACACAGACGAGTCTTCCCTCTGTAAAATATTTTAACCTGTTGGAAGGCTTGAAATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCCTTGGACCANGATATTGCCAGTGGAGGTTGGA-TTCTGGACAGAGTACAATGGAATTGCTTCTATG-TCCTTGTGGCTAATGAT-ATTCTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216694" ref_strand="+" ref_description="SGN-E216694 [cLEL-1-N22](-)">
      <seq>aaaaaaacctgcaacttggcgatcttgaagttgtcaaaggatggactatggtgggctcctcacaagtatcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtccccaaccactatttctctcaatgtatgaaaggaaggaggatttcaatgggtttgtgagcacttttgtcaaccgtattgtctgggtggagacaaatgagtcttccctctgtaaatattttaactgttggaaggcttgagatctgcaacacccggcaactgcggataagttgtcttatcgttggccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttcaatgttctttgttgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6845" stop="5270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6545" g_stop="6516" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5575" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="374" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="412"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E216694" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6545" e_stop="6516"/>
          <exon e_start="5918" e_stop="5575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTT</genome_strand>
        <mrna_strand>AAAAAAACCTGCAACTTGGCGATCTTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAAATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCAATGTTCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408470" ref_strand="+" ref_description="SGN-E408470 [PPI-11-O3]">
      <seq>tggaaccactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccacctatgaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatgtggtttcccttcctgatgctaacagcaatggagccacagaccacaacagaaaacggagccggcaaggtctggatttgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtatcaaggcaactggacgagcatgggaggatgtatcctgtagctgggagtctactgaagaggaaggaacccgagggaggatgggacagtgagagctacaggttcaagcaatcaccatggcagtaggaatgcaaaaaaactgcaacttggcgatcttcaagttatcaaaggatggactatggtgggctcctcaaaagtgtcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtctccaaccaccatttctttcaatgtatgaaagggaagaggatttcaatcggtttgtgagcacctttgtcagccgtattgtctgggtggacacagacgagtcttccctctgtaaatattttaactggtgggaaggcttgaaatctgcaacacccggcaactgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7254" stop="5365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6954" g_stop="6516" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5665" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="693" r_length="255" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E408470" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6954" e_stop="6516"/>
          <exon e_start="5918" e_stop="5665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACT-GTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCG</genome_strand>
        <mrna_strand>TGGAACCACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCACCTATGAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATGTGGTTTCCCTTCCTGATGCTAACAGCAATGGAGCCACAGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATTTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTATCAAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGGAGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGCTACAGGTTCAAGCAATCACCATGGCAGTAGGAATGCAAAAAAA-CTGCAACTTGGCGATCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGGATGGACTATGGTGGGCTCCTCAAAAGTGTCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCTCCAACCACCATTTCTTTCAATGTATGAAAGGGAAGAGGATTTCAATCGGTTTGTGAGCACCTTTGTCAGCCGTATTGTCTGGGTGGACACAGACGAGTCTTCCCTCTGTAAATATTTTAACTGGTGGGAAGGCTTGAAATCTGCAACACCCGGCAACTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705518" ref_strand="+" ref_description="SGN-E705518 [FA27BE07]">
      <seq>tcagaatgaacaatccagaaatgggaaacttatcatcttggtttgctccagggaatagttactcaacgatgacaattccatcaatgttgcctgatcggggggagcagccaccatttccaataatcccacccggtgccccgcgaatgttaggtccatctgctgctggttccccttatactccagatgttttcaggggttcggtattgtcatcatcacctgctatgccttttcccgctgccccattccagtatcctgtgttcccttttggaactactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccgcctataaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatatggtttcccttcccgatgctaacagcaatggagccaccgaccacaacagaaaacggagccggcaaggtctggatctgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtaacgaggcaactggacgagcatgggaggatgtatcctgtagctggaggtctactgaagaggaaggaacccgagggaggatgggacagtgagagttacaggttcaagcaatcaccgtggcagtaggaatgcaaaaaaacctgcaacttggcgatcttgaagttgtcaaaggatggactatggtgggctcctcacaagtatcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtccccaaccactatttctctcaatgtatgaaaggaaggaggatttcaatgggtttgtgagcacttttgtcaaccgtattgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7519" stop="5443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7219" g_stop="6516" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5743" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="880" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E705518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7219" e_stop="6516"/>
          <exon e_start="5918" e_stop="5743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGG</genome_strand>
        <mrna_strand>TCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421760" ref_strand="+" ref_description="SGN-E421760 [STM-33-K18]">
      <seq>tggaaccactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccacctatgaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatgtggtttcccttcctgatgctaacagcaatggagccacagaccacaacagaaaacggagccggcaaggtctggatttgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtatcaaggcaactggacgagcatgggaggatgtatcctgtagctgggagtctactgaagaggaaggaacccgagggaggatgggacagtgagagctacaggttcaagcaatcaccatggcagtaggaatgcaaaaaaactgcaacttggcgatcttcaagttatcaaaggatggactatggtgggctcctcaaaagtgtcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcaactctccaccaccatttctttcatgtatgaaaggaaggaggatttcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7254" stop="5479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6954" g_stop="6516" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5918" g_stop="5777" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="579" r_length="141" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E421760" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6954" e_stop="6516"/>
          <exon e_start="5918" e_stop="5777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGG</genome_strand>
        <mrna_strand>TGGAACCACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCACCTATGAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATGTGGTTTCCCTTCCTGATGCTAACAGCAATGGAGCCACAGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATTTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTATCAAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGGAGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGCTACAGGTTCAAGCAATCACCATGGCAGTAGGAATGCAAAAAAA-CTGCAACTTGGCGATCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGGATGGACTATGGTGGGCTCCTCAAAAGTGTCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAACTCTCCACCACCATTTCTTTC-ATGTATGAAAGGAAGGAGGATTTCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330759" ref_strand="+" ref_description="SGN-E330759 [cTOD-8-F4]">
      <seq>aatgcttctagcctcagaatgaacaatccagaaatgggaaacttatcatcttggtttgctccagggaatagttactcaacgatgacaattccatcaatgttgcctgatcggggggagcagccaccatttccaataatcccacccggtgccccgcgaatgttaggtccatctgctgctggttccccttatactccagatgttttcaggggttcggtattgtcatcatcacctgctatgccttttcccgctgccccattccagtatcctgtgttcccttttggaactactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccgcctataaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatatggtttcccttcccgatgctaacagcaatggagccaccgaccacaacagaaaacggagccggcaaggtctggatctgaatgcangtcctggagctgtggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7532" stop="6405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7232" g_stop="6705" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E330759" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7232" e_stop="6705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTG</genome_strand>
        <mrna_strand>AATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCANGTCCTGGAGCTGTGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272391" ref_strand="+" ref_description="SGN-E272391 [cLEM-19-E22]">
      <seq>acaattccatcaatgttgcctgatcggggggagcagccaccatttccaataatcccacccggtgccccgcgaatgttaggtccatctgctgctggttccccttatactccagatgttttcaggggttcggtattgtcatcatcacctgctatgccttttcccgctgccccattccagtatcctgtgttcccttttggaactactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccgcctataaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatatggtttcccttcccgatgctaacagcaatggagccaccgaccacaacagaaaacggagccggcaaggtctggatctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7448" stop="6428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7148" g_stop="6728" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E272391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7148" e_stop="6728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATG</genome_strand>
        <mrna_strand>ACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249479" ref_strand="+" ref_description="SGN-E249479 [cLEF-56-G16]">
      <seq>cccaactaaatgcttctagcctcagaatgaacaatccagaaatgggaaacttatcatcttggtttgctccagggaatagttactcaacgatgacaattccatcaatgttgcctgatcggggggagcagccaccatttccaataatcccacccggtgccccgcgaatgttaggtccatctgctgctggttccccttatactccagatgttttcaggggttcggtattgtcatcatcacctgctatgccttttcccgctgccccattccagtatcctgtgttcccttttggaactactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccgcctataaattcacagttgctaggtgctgtggcacctcaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7540" stop="6521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7240" g_stop="6821" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E249479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7240" e_stop="6821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACC</genome_strand>
        <mrna_strand>CCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268781" ref_strand="+" ref_description="SGN-E268781 [cLEM-16-J8]">
      <seq>accatataactaatcttgtttcatcaaaaaataaatgttcaggccctcttcgtagttttggaggactcgatctcgatttgaatagagttgatgaacctaatgatgtaggtcaatgctccttgagtagcagtcatagattagagggtgctgtttttcccgcaagagcatcttcatccagtatcttgccaactgcagaagtgaggagggactttgatttgaataatgggcctggtgttgatgattcatgtgcagaacagcctctattccaccagagtcatcagggaaacatgcgctcccaactaaatgcttctagcctcagaatgaacaatccagaaatgggaaacttatcatcttggtttgctccagggaatagttactcaacgatgacaattccatcaatgttgcctgatcggggggagcagccaccatttccaataatcccacccggtgccccgcgaatgttaggtccatctgctgctggttccccttatactccagatgttttcaggggttcggtattgtcatcatcacctgctatgccttttcccgctgccccattccagtatcctgtgttcccttttggaactactttcccacttccctctggaacatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7834" stop="6618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7534" g_stop="6918" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E268781" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7534" e_stop="6918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGCAGAAGTGAGGAGGGACTTTGATTTGAATAATGGGCCTGGTGTTGATGATTCATGTGCAGAACAGCCTCTATTCCACCAGAGTCATCAGGGAAACATGCGCTCCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCT</genome_strand>
        <mrna_strand>ACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTCGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGCAGAAGTGAGGAGGGACTTTGATTTGAATAATGGGCCTGGTGTTGATGATTCATGTGCAGAACAGCCTCTATTCCACCAGAGTCATCAGGGAAACATGCGCTCCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333442" ref_strand="+" ref_description="SGN-E333442 [cTOD-20-E9]">
      <seq>gaagtttgacttaaatgaaggttttatttctgatgaggggaaatatggggagtcaatcaactcgacaggccctgggtgtttgtcgaatgtccaaataatgagcccatcaacatttgctgtctcttctgtttccagtagccttcctgcttccattacggtggctgctgctgccaaaggaccttttgtcccaccagaagatctattgagagtcaaaggggagtttggatggaaaggatcagcagccacaagtgcatttcgtccggctgagccaagaaaaccccctgacatgcattcaaattccatgaccatctctgttactgaagcttcctccagcaagcatggtcgacctccattagatattgatctgaatgtagctgatgaaagagttttggaggatataaattctcaggattgtgctttagcaataggttctgcggtggaccatataactaatcttgtttcatcaaaaaataaatgttcaggccctcttcgtagttttggaggacttgatctcgatttgaatagagttgatgaacctaatgatgtangtcaatgctccttgagtagcagtcatagattagagggtgctgttttttcccgcaagagcatcttcatccagtatcttgccaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8274" stop="7042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7974" g_stop="7342" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E333442" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7974" e_stop="7342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTG-TTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGC</genome_strand>
        <mrna_strand>GAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTANGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333466" ref_strand="+" ref_description="SGN-E333466 [cTOD-20-E10]">
      <seq>gaagtttgacttaaatgaaggttttatttctgatgaggggaaatatggggagtcaatcaactcgacaggccctgggtgtttgtcgaatgtccaaataatgagcccatcaacatttgctgtctcttctgtttccagtagccttcctgcttccattacggtggctgctgctgccaaaggaccttttgtcccaccagaagatctattgagagtcaaaggggagtttggatggaaaggatcagcagccacaagtgcatttcgtccggctgagccaagaaaaccccctgacatgcattcaaattccatgaccatctctgttactgaagcttcctccagcaagcatggtcgacctccattagatattgatctgaatgtagctgatgaaagagttttggaggatataaattctcaggattgtgctttagcaataggttctgcggtggaccatataactaatcttgtttcatcaaaaaataaatgttcaggccctcttcgtagttttggaggacttgatctcgatttgaatagagttgatgaacctaatgatgtangtcaatgctccttgagtagcagtcatagattagagggtgctgtttttcccgcaagagcatcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8274" stop="7061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7974" g_stop="7361" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E333466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7974" e_stop="7361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCAT</genome_strand>
        <mrna_strand>GAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTANGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740782" ref_strand="+" ref_description="SGN-E740782 [LC22DE02]">
      <seq>cttataactgccaaattctgataagggactgttgatacttcagttattgaggataaagccgcatcaagaatgtaatttagctataaggaatttgacaaaggatgaacctaaagctgaagagatgacgaagcatgattctggcagtggattacttactaagaaagagacacctggattttctaatgcagaagtggaaaatttggaatcaagagaatctaaatactctggtgtagaggcagatagaccaaaggaatgcgtatccatcaaaggggaaaattcttcaagctctgctgctgctgccccagattcagcttcaaagatgaagtttgacttaaatgaaggttttatttctgatgaggggaaatatggggagtcaatcaactcgacaggccctgggtgtttgtcgaatgtccaaataatgagcccatcaacatttgctgtctcttctgtttccagtagccttcctgcttccattacggtggctgctgctgccaaaggaccttttgtcccaccagaagatctattgagagtcaaaggggagtttggatggaaaggatcagcagccacaagtgcatttcgtccggctgagccaagaaaaccccctgacatgcattcaaattccatgaccatctctgttactgaagcttcctccagcaagcatggtcgacctccattagatattgatctgaatgtagctgatgaaagagttttggaggatataaattctcaggattgtgctttagcaataggttctgcggtggaccatataactaatcttgtttcatcaaaaaataaatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8594" stop="7194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8295" g_stop="7494" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E740782" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8295" e_stop="7494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATC-TGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCA</genome_strand>
        <mrna_strand>CTTATAACTGCCAAATTCTGAT-AAGGGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCAAGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585411" ref_strand="+" ref_description="SGN-E585411 [67871]">
      <seq>taaaaatgacgtgagtagggtgttaggtgttgctagtacagaggtgaagccgccttcggttgtggcaaaatctgaatctatagagaggggtgacaaggaagagctgcaacaaactggttctagtcgagattctattgcagggaaaggtggacattctgatgaaatggatgcaaagaatgtttttcagtcagaacagccaaattctgataaaaaaactgttgatacttcagttattgaggataaagccgcatctgaatctaatgtagctagaaggaatttgataaaggatgaaccaaatgctgaagagatgactacgcatgatactgacagtggattacttactaagaaagagacacctggattttgtaatgcagaagtggaaaatgtggaatcaagagaatctaaatactctggtgtagaggccgatagaccaaaggaatgcgtatccatcaaaggggaaacttcttcaagctctgctgctgctgcccctgattcagcttcaaagatgaattttgacttaaatgaaggttttatttctgatgaagggaaatatggggagccaatcaactcgacaggccctgggtgtttgtcaaacgtccaaataatgagcccatcaacatttgctgtctcttctgtttccagtagccttcctgcttccattacggtggctgctgctgccaaaggtccttttgtcccgccagaagatctgttgagagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8780" stop="7464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8481" g_stop="7764" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E585411" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8481" e_stop="7764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTC</genome_strand>
        <mrna_strand>TAAAAATGACGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAGCCGCCTTCGGTTGTGGCAAAATCTGAATCTATAGAGAGGGGTGACAAGGAAGAGCTGCAACAAACTGGTTCTAGTCGAGATTCTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAAGAATGTTTTTCAGTCAGAACAGCCAAATTCTGATAAAAAAACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATCTAATGTAGCTAGAAGGAATTTGATAAAGGATGAACCAAATGCTGAAGAGATGACTACGCATGATACTGACAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTGTAATGCAGAAGTGGAAAATGTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCCGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAACTTCTTCAAGCTCTGCTGCTGCTGCCCCTGATTCAGCTTCAAAGATGAATTTTGACTTAAATGAAGGTTTTATTTCTGATGAAGGGAAATATGGGGAGCCAATCAACTCGACAGGCCCTGGGTGTTTGTCAAACGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGTCCTTTTGTCCCGCCAGAAGATCTGTTGAGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332637" ref_strand="+" ref_description="SGN-E332637 [cTOD-18-P17]">
      <seq>ttaatgagaagttagttgagatggcaaagtctgctgcggctccttgcaatgtattcgaaaaagcaagtgatggtgaacagagcagacaattccatgaggaaaaagtaatttccactaagacacttgataatgttctagatggcgaatcaggtggacatggtagttcaataggagaggacaaagtcactaatggccttgtaagcatagaaggcttgaaacgaccagttggaatttctgcttttaaatatgagggcgacgacaaaaatgatgtgagtagggtgttaggtgttgctagtacagaggtgaaaccgccttcagttgtggtgaaatctgaagctacagaaagaggtgacaaggaagagttgcaacaaactggttctagtcgagacactattgcagggaaaggtggacattctgatgaaatggatgcaaatagtgttttaaagtcagaacagccaaattctgataaaaagactgttgatacttcagttattgaggataaagccgcatctgaatgtaatttagctataaggaatttgacaaaggatgaacctaaagctgaagagatgacgaagcatgattctggcagtggattacttactaagaaagagacacctggattttctaatgcagaagtggaaaatttggaatcaagagaatctaaatactctggtgtagaggcagatagaccaaaggaatgcgtatccatcaaagggggaaattcctcaagctctgctgctgctgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9040" stop="7693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8740" g_stop="7993" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E332637" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8740" e_stop="7993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCC</genome_strand>
        <mrna_strand>TTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGGAAATTCCTCAAGCTCTGCTGCTGCTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736178" ref_strand="+" ref_description="SGN-E736178 [LC04CF03]">
      <seq>ccgttataaagagaaacagttcgttgttgctaatacgtcgtggtctgagggtaaagtacatgctaatagaagtgcaatgacggattttaacagagaaagaaggccctcttcatctccttctgaagaaacaaccacgggagagtgctttaattcatcctgcactgattcacagatggctggaaatttgaaatcaggtgttaatgagaagttagttgagatggcaaagtctgctgcggctccttgcaatgtattcgaaaaagcaagtgatggtgaacagagcagacaattccatgaggaaaaagtaatttccactaagacacttgataatgttctagatggcgaatcaggtggacatggtagttcaataggagaggacaaagtcactaatggccttgtaagcatagaaggcttgaaacgaccagttggaatttctgcttttaaatatgagggcgacgacaaaaatgatgtgagtagggtgttaggtgttgctagtacagaggtgaaaccgccttcagttgtggtgaaatctgaagctacagaaagaggtgacaaggaagagttgcaacaaactggttctagtcgagacactattgcagggaaaggtggacattctgatgaaatggatgcaaatagtgttttaaagtcagaacagccaaattctgataaaaagactgttgatacttcagttattgaggataaagccgcctctgaatgtaatttagctattaggaatttgacaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9235" stop="7893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8937" g_stop="8193" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E736178" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8937" e_stop="8193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGAT</genome_strand>
        <mrna_strand>CCGTTATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCCTCTGAATGTAATTTAGCTATTAGGAATTTGACAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331694" ref_strand="+" ref_description="SGN-E331694 [cTOD-7-H15]">
      <seq>atgtttctccccaacgagatagcccttcatgtggggagacctgcacaggtgatgagcttaagccaaagacatctgctgtagatagttcttcaggtaaccatagtgggcgaaatgacagcgatgctaatggtgataaagagaaacaattcgttgttgctaatacatcctggtctgacggtaaagcacatgctaatataagtgcaatgaccgattttaacatagaaagaaggccctcttgatcttcttctgaagaaacaaccacgggagagtgctttaattcatcctgcactgattcacagatggctggaaattggaaatcaggtgttaatgagaagttagttgagatggcaaagatctgctgcggctacttgcaatgtattcgaaaaagcatgtgatggtgaacagagcaaacaattccatgaggaaaaagtgatttccactaagacacttgataatgttctagatagcgaatcaggtggacatggtagatcaatatgagaggacaaagacactaatggccttgtaagcatagaaagcttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9363" stop="8223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9064" g_stop="8523" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E331694" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9064" e_stop="8523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCCCCAAGGAGATAGCCCTTCAGGTGGGGAGACCTGCACAGGTGATGAGCTTAAGCCAAAGACATCTCCTGTAGATAGTTCTTCAGGTAACCATAGTGGGCGAAATGACGGTGATGCTAATGGTGATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAG-TCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAA</genome_strand>
        <mrna_strand>ATGTTTCTCCCCAACGAGATAGCCCTTCATGTGGGGAGACCTGCACAGGTGATGAGCTTAAGCCAAAGACATCTGCTGTAGATAGTTCTTCAGGTAACCATAGTGGGCGAAATGACAGCGATGCTAATGGTGATAAAGAGAAACAATTCGTTGTTGCTAATACATCCTGGTCTGACGGTAAAGCACATGCTAATATAAGTGCAATGACCGATTTTAACATAGAAAGAAGGCCCTCTTGATCTTCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTGGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGATCTGCTGCGGCTACTTGCAATGTATTCGAAAAAGCATGTGATGGTGAACAGAGCAAACAATTCCATGAGGAAAAAGTGATTTCCACTAAGACACTTGATAATGTTCTAGATAGCGAATCAGGTGGACATGGTAGATCAATATGAGAGGACAAAGACACTAATGGCCTTGTAAGCATAGAAAGCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479524" ref_strand="+" ref_description="SGN-E479524 [cSTD-10-E10]">
      <seq>ctacaccagtggatactaatatgaagtctgcatgctcgtccccaggcccaataaaacaagcatcacctccttcatccggaaaagtgggtcagccaagaatttcagcttttggttccagtgatgttcctctggcaagggaagataagagcagcagttctagtcagtctcacaatcacagtcagtccttatcagggaaggaggatgcaaggagttcaactgctgtttcaatgagcagcatcaagatctctagtggtggttctcggcaccgcaaatcgataaatggtggtcctggaccatcagtttctgcaggtcaaaaagaaggttctacaaacagaagttcttcattgcaccggaatcctaccactgagaagtcactgcagtctgcattgagtggtgaaaaaacggttgatgtgccaactgttgaggggagttgtcacaaagtgatagtaaagatatcaaacaaaggccgcagtcctgcgcggagtgtcagtggaggatcatatgaagacactacaatcatgagcagccgagcttcttctcctgtgctttctggaaagaatgatcagcttgatcgtaattctaaggagaagaaagatgcatatcgatcaaatgttactattgacgggaatgcagaatcatggcagagcaatgttttgaaagatgtactcactggatctgatgagggtgatggatcacctgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10333" stop="9030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10033" g_stop="9330" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E479524" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10033" e_stop="9330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCAGTGGAAACTAATATGAAGTCTGCATGCTCTTCTCCAGGCCCAATAAAACAAGCATCACCTCCTTCATCCGGAAAAGTGGGTCAGCCAAGAATTTCAGCTTTTGGTTCCAGTGATGTTCCTCTGGCTAGGGAAGATAAGAGCAGCAGTTCTAGTCAGTCTCACAATCACAGTCAGTCCTTATCAGGGAAGGAGGATGCAAGGAGTTCAACTGCTGTTTCAATGAGCAGCATCAAGATCTCTAGTGGTGGTTCTCGGCACCGCAAGTCGATAAATGGTGGTCCTGGACCATCGGTTTCTGCAGGTCAAAAAGAAGGTTCTACAAACAGAAGTTCTTCATTGCACCGGAATCCTACCACTGAGAAGTCGCTGCAGTCTGCATTGAGTGGTGAAAAAACGGTTGATGTGCCAGCTGTAGAAGGGAGTTGTCACAAATTGATAGTAAAGATACCAAACAAAGGCCGCAGTCCTGCGCGGAGTGTCAGTGGAGGATCATGTGAAGACCCTTCAATCATGAGCAGCCGAGCTTCTTCTCCTGTGCTTTCTGAAAAGAATGATCAGCTTGATCGTAATTCTAAGGAGAAGAAAGATGCATATCGATCAGATGTTACTATTAACGTGAATACAGAATCATGGCAGAGCAATGTTTTGAAAGATGTACTCACTGGATCTGATGAGGGTGATGGATCACCTGTTGCT</genome_strand>
        <mrna_strand>CTACACCAGTGGATACTAATATGAAGTCTGCATGCTCGTCCCCAGGCCCAATAAAACAAGCATCACCTCCTTCATCCGGAAAAGTGGGTCAGCCAAGAATTTCAGCTTTTGGTTCCAGTGATGTTCCTCTGGCAAGGGAAGATAAGAGCAGCAGTTCTAGTCAGTCTCACAATCACAGTCAGTCCTTATCAGGGAAGGAGGATGCAAGGAGTTCAACTGCTGTTTCAATGAGCAGCATCAAGATCTCTAGTGGTGGTTCTCGGCACCGCAAATCGATAAATGGTGGTCCTGGACCATCAGTTTCTGCAGGTCAAAAAGAAGGTTCTACAAACAGAAGTTCTTCATTGCACCGGAATCCTACCACTGAGAAGTCACTGCAGTCTGCATTGAGTGGTGAAAAAACGGTTGATGTGCCAACTGTTGAGGGGAGTTGTCACAAAGTGATAGTAAAGATATCAAACAAAGGCCGCAGTCCTGCGCGGAGTGTCAGTGGAGGATCATATGAAGACACTACAATCATGAGCAGCCGAGCTTCTTCTCCTGTGCTTTCTGGAAAGAATGATCAGCTTGATCGTAATTCTAAGGAGAAGAAAGATGCATATCGATCAAATGTTACTATTGACGGGAATGCAGAATCATGGCAGAGCAATGTTTTGAAAGATGTACTCACTGGATCTGATGAGGGTGATGGATCACCTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216317" ref_strand="+" ref_description="SGN-E216317 [cLEL-13-A6](-)">
      <seq>ggtgcagaagttgtatgagcgatccatccgaatgaggacaagattcaagcttagcttcttatattctttctatgtgatagatgtgaaaaccaaacaagactggtgtttgatgatatgtaagttggcttcatgttatataaacgtgagaatcattaaattagtggtcattgtttggcacaaaatctggcgtcaacgtgtgtgtattatataaaaagacatgggcaagtagtccatgtgtatgagtcagttttttttcccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15624" stop="14768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15324" g_stop="15064" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="262" polyA_stop="279"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E216317" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15324" e_stop="15064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCAGAAGTTGTATGAGCGATCCATCCGAATGAGGACAAGATTCAAGCTTAGCTTCTTATATTCTTTCTATGTGATAGATGTGAAAACCAAACAAGACTGGTGTTTGATGATATGTAAGTTGGCTTCATGTTATATAAACGTGAGAATCATTAAATTAGTGGTCATTGTTTGGCACAAAATCTGGCGTCAACGTGTGTGTATTATATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCAGTTTTTTTTACAAGG</genome_strand>
        <mrna_strand>GGTGCAGAAGTTGTATGAGCGATCCATCCGAATGAGGACAAGATTCAAGCTTAGCTTCTTATATTCTTTCTATGTGATAGATGTGAAAACCAAACAAGACTGGTGTTTGATGATATGTAAGTTGGCTTCATGTTATATAAACGTGAGAATCATTAAATTAGTGGTCATTGTTTGGCACAAAATCTGGCGTCAACGTGTGTGTATTATATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCAGTTTTTTTTCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390269" ref_strand="+" ref_description="SGN-E390269 [TUS-40-I11]">
      <seq>tggaggaggaggagcagctccagcagcaaaggcaagtgaaccagtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgttatcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagatcctgtgtcgaaattcaagaagataatgcgggccacccaaggtgcccttattgttgcttcaacccttcagattgtcctaggcttcagtggtctctggcgcaatgttacaaggtttctgagtccactttcagctgttcctttggtttctcttgttggctttggtctttatgagtttggttttcctggggttgccaaatgtgttgaaattgggttgccagagctagtccttttagtcattttctctcactatctggcacacctgatacgtccagggaagaatatatttgatcgttttgctgttcttttcacggtgatcattgtatggatttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24657" stop="30153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24957" g_stop="25066" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26917" g_stop="27090" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="382" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27091" i_stop="28172" i_length="1082">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28173" g_stop="28273" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="483" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28274" i_stop="28519" i_length="246">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28520" g_stop="28595" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="559" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28596" i_stop="28675" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28676" g_stop="28735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="619" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28736" i_stop="29767" i_length="1032">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29768" g_stop="29853" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="705" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390269" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24957" e_stop="25066"/>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="27090"/>
          <exon e_start="28173" e_stop="28273"/>
          <exon e_start="28520" e_stop="28595"/>
          <exon e_start="28676" e_stop="28735"/>
          <exon e_start="29768" e_stop="29853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCGGTTAGTGTCCTCAAACACCAGTCATTTTCTCTTTATTCTTTGGATCATCTAGTGAACTTATTGGTTGATTGTCAAGGACAAAAATTGAGATATTGGTTAACTTATATACTCAAAGGCCAGCTCCCAAAATCCTTTTCGAAAAGTTAGAAATTAAATTACAGCCTTCCTTGTTTTTCCCCTCTTGGGTCATTTAGGTTCCCAATTCTAAACCAATTTTTTGCACTCCCTGTCTGATCAGATTTCTTGGCACAATCACTCCACCACTTTTCTTCTTTTCTCTTTATTTGGTCCATATGGTGTAACAACTACTTTTTGTTACCTTTTGACTATTTGTAAATATGTTTAGTCCATTTTTTCTCATAATTTCAGCAATATGAAAGTGTGTACATTGTTTTAGGGTTGTAATGGTATTTCTCCAAACAATTGAATCAAAATCACAACTTCTCAATTTTGTAAAAAATATACAAGTACCAATTTTTTCAATAACCAAATCCATACACTAACAATAATTTTCCATAATATCACTTTGAGAAAACAAATTAATATACCATCCAATTGTCAAAAGAAGCTGATGCACAAATTTAAACCTTTTTGGAGTAATGTGGTCATGCCAGGAGATGTTAAAAGTTTACTACCGAGCAGTGTCTAGGGTTGATAAAAGACTGAAGTTACTGAAGAAGACAGTTACTCTACATATTTTGTGGATTGTTTGGATAGAAAGAAAAAGAGATGTTTTGAGGAAAAGGTAGAACACCTTTATTTTCTTAAAAATAGATGCTTACTAATTTATACTCATGGTGTAAGGGTCGTATCGTATGACAGACGGTTTAGTTCAGCTATTTTTTTCTTTTCTCATATGGTACTGAGATATAATTAATTTTACATTACCTTATCTAAAAAAAAGGAAGAATAAAAAACTGATGCAGAAATAGTTTACTTTCAACTTGATAATTCATGTCAGTGTATATTCCTTTAACTTCTTTAATAGCCAGGAAGACGCTTAGAGACACAAAGGAAGTCATCCAATTCATCTTGGTGATATTGGATCTTAGTTTATTGTTAATATTTCTCTGTTTATTCAGAAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAGGTTTGTTACATCACAAGATTTCTCCCTCCATTTGAGCGATTTCTCATAATGCTACCTAACTTTATACCATCAATTATGCACGTTCTTGCCTGCTCTTGGATATTCTTATGCTATACTTTGTGAGCAAGTTCTCTAAGTCTAAGGGTCACTTTCTTGTGGTTTAAGGTCTGTTCAGTTATGTTAAGTGCTTTGTGTTCGTACAGTGTGCTAGCTCTGATTATCATTTTACTTCATGTGGATTCTTAGGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGGGTAAGCAGAAACTCACCACACTTATCTTGCATTGATATTCATCCAATGATGATTGTTGAATTTGTTTCATCTCTGTTTAGGTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGC</genome_strand>
        <mrna_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG......................................................................................................................................................................................................................................................GTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG................................................................................GTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390258" ref_strand="+" ref_description="SGN-E390258 [TUS-40-G11]">
      <seq>tggaggaggaggagcagctccagcagcaaaggcaagtgaaccagtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgttatcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagatcctgtgtcgaaattcaagaagataatgcgggccacccaaggtgcccttattgttgcttcaacccttcagattgtcctaggcttcagtggtctctggcgcaatgttacaaggtttctgagtccactttcagctgttcctttggtttctcttgttggctttggtctttatgagtttggttttcctggggttgccaaatgtgttgaaattgggttgccaaagctagtccttttagtcattttctctcagtatctggcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24657" stop="30080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24957" g_stop="25066" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26917" g_stop="27090" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="382" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27091" i_stop="28172" i_length="1082">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28173" g_stop="28273" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="483" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28274" i_stop="28519" i_length="246">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28520" g_stop="28595" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="559" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28596" i_stop="28675" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28676" g_stop="28735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="619" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28736" i_stop="29767" i_length="1032">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29768" g_stop="29780" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="632" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24957" e_stop="25066"/>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="27090"/>
          <exon e_start="28173" e_stop="28273"/>
          <exon e_start="28520" e_stop="28595"/>
          <exon e_start="28676" e_stop="28735"/>
          <exon e_start="29768" e_stop="29780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCGGTTAGTGTCCTCAAACACCAGTCATTTTCTCTTTATTCTTTGGATCATCTAGTGAACTTATTGGTTGATTGTCAAGGACAAAAATTGAGATATTGGTTAACTTATATACTCAAAGGCCAGCTCCCAAAATCCTTTTCGAAAAGTTAGAAATTAAATTACAGCCTTCCTTGTTTTTCCCCTCTTGGGTCATTTAGGTTCCCAATTCTAAACCAATTTTTTGCACTCCCTGTCTGATCAGATTTCTTGGCACAATCACTCCACCACTTTTCTTCTTTTCTCTTTATTTGGTCCATATGGTGTAACAACTACTTTTTGTTACCTTTTGACTATTTGTAAATATGTTTAGTCCATTTTTTCTCATAATTTCAGCAATATGAAAGTGTGTACATTGTTTTAGGGTTGTAATGGTATTTCTCCAAACAATTGAATCAAAATCACAACTTCTCAATTTTGTAAAAAATATACAAGTACCAATTTTTTCAATAACCAAATCCATACACTAACAATAATTTTCCATAATATCACTTTGAGAAAACAAATTAATATACCATCCAATTGTCAAAAGAAGCTGATGCACAAATTTAAACCTTTTTGGAGTAATGTGGTCATGCCAGGAGATGTTAAAAGTTTACTACCGAGCAGTGTCTAGGGTTGATAAAAGACTGAAGTTACTGAAGAAGACAGTTACTCTACATATTTTGTGGATTGTTTGGATAGAAAGAAAAAGAGATGTTTTGAGGAAAAGGTAGAACACCTTTATTTTCTTAAAAATAGATGCTTACTAATTTATACTCATGGTGTAAGGGTCGTATCGTATGACAGACGGTTTAGTTCAGCTATTTTTTTCTTTTCTCATATGGTACTGAGATATAATTAATTTTACATTACCTTATCTAAAAAAAAGGAAGAATAAAAAACTGATGCAGAAATAGTTTACTTTCAACTTGATAATTCATGTCAGTGTATATTCCTTTAACTTCTTTAATAGCCAGGAAGACGCTTAGAGACACAAAGGAAGTCATCCAATTCATCTTGGTGATATTGGATCTTAGTTTATTGTTAATATTTCTCTGTTTATTCAGAAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAGGTTTGTTACATCACAAGATTTCTCCCTCCATTTGAGCGATTTCTCATAATGCTACCTAACTTTATACCATCAATTATGCACGTTCTTGCCTGCTCTTGGATATTCTTATGCTATACTTTGTGAGCAAGTTCTCTAAGTCTAAGGGTCACTTTCTTGTGGTTTAAGGTCTGTTCAGTTATGTTAAGTGCTTTGTGTTCGTACAGTGTGCTAGCTCTGATTATCATTTTACTTCATGTGGATTCTTAGGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGGGTAAGCAGAAACTCACCACACTTATCTTGCATTGATATTCATCCAATGATGATTGTTGAATTTGTTTCATCTCTGTTTAGGTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACC</genome_strand>
        <mrna_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG......................................................................................................................................................................................................................................................GTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG................................................................................GTTGCCAAATGTGTTGAAATTGGGTTGCCAAAGCTAGTCCTTTTAGTCATTTTCTCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390215" ref_strand="+" ref_description="SGN-E390215 [TUS-39-H12]">
      <seq>tggaggaggaggagcagctccagcagcaaaggcaagtgaaccagtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgttatcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactatattgcctgctgtgattggagggtcttatacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24657" stop="27329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24957" g_stop="25066" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26917" g_stop="27029" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="321" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390215" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24957" e_stop="25066"/>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="27029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTT</genome_strand>
        <mrna_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTATATTGCCTGCTGTGATTGGAGGGTCTTATACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390251" ref_strand="+" ref_description="SGN-E390251 [TUS-40-E7]">
      <seq>tggaggaggaggagcatttccagcagcaaaggcaagtgaaccagtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgatatcattcctacagctctagttccccaaatgggaggtggaaaagaggaaaaagcccattttaatctgacatcgctattcagtcgctgggcagaataccttgttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24657" stop="27110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24957" g_stop="25066" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.564" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26917" g_stop="26978" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="271" r_length="63" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390251" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24957" e_stop="25066"/>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="26978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTC-GTCGCTGGGCTGAACACCTTGTTGCA</genome_strand>
        <mrna_strand>TGGAGGAGGAGGAGCATTTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGATATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAA.............................................................................................................GAGGAAAAAGCCCATTTTAATCTGACATCGCTATTCAGTCGCTGGGCAGAATACCTTGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312144" ref_strand="+" ref_description="SGN-E312144 [cTOA-11-O17]">
      <seq>ggaggaggaggatcagctccagcagcaaaggcaagtgaacggggtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgttatcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagactatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagatcctgtgtcgaaattcaagaagattatgcgggccacccaaggtgcccttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24658" stop="28515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24958" g_stop="25066" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26917" g_stop="27090" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="382" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27091" i_stop="28172" i_length="1082">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28173" g_stop="28215" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="425" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E312144" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24958" e_stop="25066"/>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="27090"/>
          <exon e_start="28173" e_stop="28215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAAC-CAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCGGTTAGTGTCCTCAAACACCAGTCATTTTCTCTTTATTCTTTGGATCATCTAGTGAACTTATTGGTTGATTGTCAAGGACAAAAATTGAGATATTGGTTAACTTATATACTCAAAGGCCAGCTCCCAAAATCCTTTTCGAAAAGTTAGAAATTAAATTACAGCCTTCCTTGTTTTTCCCCTCTTGGGTCATTTAGGTTCCCAATTCTAAACCAATTTTTTGCACTCCCTGTCTGATCAGATTTCTTGGCACAATCACTCCACCACTTTTCTTCTTTTCTCTTTATTTGGTCCATATGGTGTAACAACTACTTTTTGTTACCTTTTGACTATTTGTAAATATGTTTAGTCCATTTTTTCTCATAATTTCAGCAATATGAAAGTGTGTACATTGTTTTAGGGTTGTAATGGTATTTCTCCAAACAATTGAATCAAAATCACAACTTCTCAATTTTGTAAAAAATATACAAGTACCAATTTTTTCAATAACCAAATCCATACACTAACAATAATTTTCCATAATATCACTTTGAGAAAACAAATTAATATACCATCCAATTGTCAAAAGAAGCTGATGCACAAATTTAAACCTTTTTGGAGTAATGTGGTCATGCCAGGAGATGTTAAAAGTTTACTACCGAGCAGTGTCTAGGGTTGATAAAAGACTGAAGTTACTGAAGAAGACAGTTACTCTACATATTTTGTGGATTGTTTGGATAGAAAGAAAAAGAGATGTTTTGAGGAAAAGGTAGAACACCTTTATTTTCTTAAAAATAGATGCTTACTAATTTATACTCATGGTGTAAGGGTCGTATCGTATGACAGACGGTTTAGTTCAGCTATTTTTTTCTTTTCTCATATGGTACTGAGATATAATTAATTTTACATTACCTTATCTAAAAAAAAGGAAGAATAAAAAACTGATGCAGAAATAGTTTACTTTCAACTTGATAATTCATGTCAGTGTATATTCCTTTAACTTCTTTAATAGCCAGGAAGACGCTTAGAGACACAAAGGAAGTCATCCAATTCATCTTGGTGATATTGGATCTTAGTTTATTGTTAATATTTCTCTGTTTATTCAGAAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTG</genome_strand>
        <mrna_strand>GGAGGAGGAGGATCAGCTCCAGCAGCAAAGGCAAGTGAACGGGGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGACTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAGAAGATTATGCGGGCCACCCAAGGTGCCCTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313565" ref_strand="+" ref_description="SGN-E313565 [cTOA-12-J3]">
      <seq>aggaggaggttcagctccagcagcaaaggcaagtgagggagtgctcacatccacctaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttttgcttggtaccattgttatcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24660" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24960" g_stop="25066" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="206" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26917" g_stop="27081" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="371" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E313565" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24960" e_stop="25066"/>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="27081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGC-CACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGAT</genome_strand>
        <mrna_strand>AGGAGGAGGTTCAGCTCCAGCAGCAAAGGCAAGTGAGGGAGTGCTCACATCCACCTAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTTTGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346924" ref_strand="+" ref_description="SGN-E346924 [cTOF-32-L3]">
      <seq>aattcggccgagggaagctttcttcttggatttagcattatcttgttatgcttggtccattgtttcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagatcctgtgtcgaaattcaagaagataatgcgggccacccaaggtgcccttattgttgcttcaacccttcagattgtcctaggcttcagtggtctctggcgcaatgttacaaggtttctgagtccactggtgcttttattgcagnngcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26412" stop="31882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26710" g_stop="26807" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="105" r_length="94" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26917" g_stop="27090" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="279" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27091" i_stop="28172" i_length="1082">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28173" g_stop="28273" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="380" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28274" i_stop="28519" i_length="246">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28520" g_stop="28528" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="389" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28529" i_stop="31492" i_length="2964">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31493" g_stop="31579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="476" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E346924" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26710" e_stop="26807"/>
          <exon e_start="26917" e_stop="27090"/>
          <exon e_start="28173" e_stop="28273"/>
          <exon e_start="28520" e_stop="28528"/>
          <exon e_start="31493" e_stop="31579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCGGTTAGTGTCCTCAAACACCAGTCATTTTCTCTTTATTCTTTGGATCATCTAGTGAACTTATTGGTTGATTGTCAAGGACAAAAATTGAGATATTGGTTAACTTATATACTCAAAGGCCAGCTCCCAAAATCCTTTTCGAAAAGTTAGAAATTAAATTACAGCCTTCCTTGTTTTTCCCCTCTTGGGTCATTTAGGTTCCCAATTCTAAACCAATTTTTTGCACTCCCTGTCTGATCAGATTTCTTGGCACAATCACTCCACCACTTTTCTTCTTTTCTCTTTATTTGGTCCATATGGTGTAACAACTACTTTTTGTTACCTTTTGACTATTTGTAAATATGTTTAGTCCATTTTTTCTCATAATTTCAGCAATATGAAAGTGTGTACATTGTTTTAGGGTTGTAATGGTATTTCTCCAAACAATTGAATCAAAATCACAACTTCTCAATTTTGTAAAAAATATACAAGTACCAATTTTTTCAATAACCAAATCCATACACTAACAATAATTTTCCATAATATCACTTTGAGAAAACAAATTAATATACCATCCAATTGTCAAAAGAAGCTGATGCACAAATTTAAACCTTTTTGGAGTAATGTGGTCATGCCAGGAGATGTTAAAAGTTTACTACCGAGCAGTGTCTAGGGTTGATAAAAGACTGAAGTTACTGAAGAAGACAGTTACTCTACATATTTTGTGGATTGTTTGGATAGAAAGAAAAAGAGATGTTTTGAGGAAAAGGTAGAACACCTTTATTTTCTTAAAAATAGATGCTTACTAATTTATACTCATGGTGTAAGGGTCGTATCGTATGACAGACGGTTTAGTTCAGCTATTTTTTTCTTTTCTCATATGGTACTGAGATATAATTAATTTTACATTACCTTATCTAAAAAAAAGGAAGAATAAAAAACTGATGCAGAAATAGTTTACTTTCAACTTGATAATTCATGTCAGTGTATATTCCTTTAACTTCTTTAATAGCCAGGAAGACGCTTAGAGACACAAAGGAAGTCATCCAATTCATCTTGGTGATATTGGATCTTAGTTTATTGTTAATATTTCTCTGTTTATTCAGAAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAGGTTTGTTACATCACAAGATTTCTCCCTCCATTTGAGCGATTTCTCATAATGCTACCTAACTTTATACCATCAATTATGCACGTTCTTGCCTGCTCTTGGATATTCTTATGCTATACTTTGTGAGCAAGTTCTCTAAGTCTAAGGGTCACTTTCTTGTGGTTTAAGGTCTGTTCAGTTATGTTAAGTGCTTTGTGTTCGTACAGTGTGCTAGCTCTGATTATCATTTTACTTCATGTGGATTCTTAGGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGGGTAAGCAGAAACTCACCACACTTATCTTGCATTGATATTCATCCAATGATGATTGTTGAATTTGTTTCATCTCTGTTTAGGTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATGGCACGTGCTCCGCTCCTTCATTTTTCACTTTTCTAATGTACTGGCATGGGTTAAATATTTGTGTGGATATGCAGATCTTTTTGGTATTTTAACATTTATGCGGTCCCAAAGATACGGAACTCCTTGGTAAAAATTACAACTTTGTAAGTGTAAGAGTGGGTCTTGCTTCTGTGGCTTACATACATTCAAAAATGATTCTACAGCATGGTATAAAAGTTGTGTTCTAGGGAAGTGGCACATGTTAGCACAGCATAAAAAGGAAAATAAGATGCTTATGTTGGGACATAAGGATTAGTTTCTGATAACCTATATTGCATTACAATCTTCAACATAATAACACTTTGTTTTGACATGTGGCATAGACCATTGTCTTCCACTCTAGAGTCCTAGAATTTAAGAAATTTAGAATGTTAACATGTCATGCTCTTATTGCCTCTCTAAAGTGACTATCCCAGTGGCTCCTCTGAGCAGTAGCTTCTGGGAAAGACAAGAAATTGGTGCGTACTTGTCCATTAAACTAACCTTGCGTAATTTGATTGAAACGATAAACAAGAAGAAAATAAGAGAGATGCATATAGGTATTTTAGCTATATAATTTTGCATGGAATGATGCTTTGTGCTTTTCGTTTCATCGCCAGTTTAGTCACAACTGATCAACTGGCTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG</genome_strand>
        <mrna_strand>GGGAAGCT-TTCTTCTTGGATTT-AGCATTATCTTGTTATGCTTGGT-CCATTGTT-TCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG......................................................................................................................................................................................................................................................GTTTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGNNGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706430" ref_strand="+" ref_description="SGN-E706430 [FA29DG06]">
      <seq>ggtttctgagtccactttcagctgttcctttggtttctcttgttggctttggtctttatgagtttggttttcctggggttgccaaatgtgttgaaattgggttgccagagctagtccttttagtcattttctctcagtatctggcacacctgatacgtccagggaagaatatatttgatcgttttgctgttcttttcacggtgatcattgtatggatttatgcacacctactcactgtgggcggggcttacaatggaaagccaccgaagacacaagcaagctgcagaactgaccgtgctggactcattagtggtgctcaatggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctctagtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtctattagcattgacacgtgttgcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttatattgccttttcttcgcttatgtangcgctggaggcttangttttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28219" stop="33781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28519" g_stop="28595" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28596" i_stop="28675" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28676" g_stop="28735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28736" i_stop="29767" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29768" g_stop="29952" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="322" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29953" i_stop="31026" i_length="1074">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31027" g_stop="31123" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="419" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31493" g_stop="31579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="506" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32811" g_stop="32869" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="565" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32955" g_stop="33046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="656" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33155" g_stop="33232" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="734" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33342" g_stop="33481" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="874" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E706430" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28519" e_stop="28595"/>
          <exon e_start="28676" e_stop="28735"/>
          <exon e_start="29768" e_stop="29952"/>
          <exon e_start="31027" e_stop="31123"/>
          <exon e_start="31493" e_stop="31579"/>
          <exon e_start="32811" e_stop="32869"/>
          <exon e_start="32955" e_stop="33046"/>
          <exon e_start="33155" e_stop="33232"/>
          <exon e_start="33342" e_stop="33481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGGGTAAGCAGAAACTCACCACACTTATCTTGCATTGATATTCATCCAATGATGATTGTTGAATTTGTTTCATCTCTGTTTAGGTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATGGCACGTGCTCCGCTCCTTCATTTTTCACTTTTCTAATGTACTGGCATGGGTTAAATATTTGTGTGGATATGCAGATCTTTTTGGTATTTTAACATTTATGCGGTCCCAAAGATACGGAACTCCTTGGTAAAAATTACAACTTTGTAAGTGTAAGAGTGGGTCTTGCTTCTGTGGCTTACATACATTCAAAAATGATTCTACAGCATGGTATAAAAGTTGTGTTCTAGGGAAGTGGCACATGTTAGCACAGCATAAAAAGGAAAATAAGATGCTTATGTTGGGACATAAGGATTAGTTTCTGATAACCTATATTGCATTACAATCTTCAACATAATAACACTTTGTTTTGACATGTGGCATAGACCATTGTCTTCCACTCTAGAGTCCTAGAATTTAAGAAATTTAGAATGTTAACATGTCATGCTCTTATTGCCTCTCTAAAGTGACTATCCCAGTGGCTCCTCTGAGCAGTAGCTTCTGGGAAAGACAAGAAATTGGTGCGTACTTGTCCATTAAACTAACCTTGCGTAATTTGATTGAAACGATAAACAAGAAGAAAATAAGAGAGATGCATATAGGTATTTTAGCTATATAATTTTGCATGGAATGATGCTTTGTGCTTTTCGTTTCATCGCCAGTTTAGTCACAACTGATCAACTGGCTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCT</genome_strand>
        <mrna_strand>GGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG................................................................................GTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTT-GCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAN.............................................................................................................GCGCTGGAGGCTTANGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312826" ref_strand="+" ref_description="SGN-E312826 [cTOA-8-K17]">
      <seq>agagctagtccttttagtcattttctctcagtatctggcacacctgatacgtccagggaagaatatatttgatcgttttgctgttcttttcacggtgatcattgtatggatttatgcacacctactcactgtgggcggggcttacaatggaaagccaccgaagacacaagcaagctgcagaactgaccgtgctggactcattagtggtgctcaatggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctctagtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28405" stop="33479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28705" g_stop="28735" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28736" i_stop="29767" i_length="1032">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29768" g_stop="29952" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="216" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29953" i_stop="31026" i_length="1074">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31027" g_stop="31123" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="313" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31493" g_stop="31579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32811" g_stop="32869" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="459" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32955" g_stop="33046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="551" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33155" g_stop="33179" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="576" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E312826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28705" e_stop="28735"/>
          <exon e_start="29768" e_stop="29952"/>
          <exon e_start="31027" e_stop="31123"/>
          <exon e_start="31493" e_stop="31579"/>
          <exon e_start="32811" e_stop="32869"/>
          <exon e_start="32955" e_stop="33046"/>
          <exon e_start="33155" e_stop="33179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATGGCACGTGCTCCGCTCCTTCATTTTTCACTTTTCTAATGTACTGGCATGGGTTAAATATTTGTGTGGATATGCAGATCTTTTTGGTATTTTAACATTTATGCGGTCCCAAAGATACGGAACTCCTTGGTAAAAATTACAACTTTGTAAGTGTAAGAGTGGGTCTTGCTTCTGTGGCTTACATACATTCAAAAATGATTCTACAGCATGGTATAAAAGTTGTGTTCTAGGGAAGTGGCACATGTTAGCACAGCATAAAAAGGAAAATAAGATGCTTATGTTGGGACATAAGGATTAGTTTCTGATAACCTATATTGCATTACAATCTTCAACATAATAACACTTTGTTTTGACATGTGGCATAGACCATTGTCTTCCACTCTAGAGTCCTAGAATTTAAGAAATTTAGAATGTTAACATGTCATGCTCTTATTGCCTCTCTAAAGTGACTATCCCAGTGGCTCCTCTGAGCAGTAGCTTCTGGGAAAGACAAGAAATTGGTGCGTACTTGTCCATTAAACTAACCTTGCGTAATTTGATTGAAACGATAAACAAGAAGAAAATAAGAGAGATGCATATAGGTATTTTAGCTATATAATTTTGCATGGAATGATGCTTTGTGCTTTTCGTTTCATCGCCAGTTTAGTCACAACTGATCAACTGGCTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTC</genome_strand>
        <mrna_strand>AGAGCTAGTCCTTTTAGTCATTTTCTCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480289" ref_strand="+" ref_description="SGN-E480289 [cSTD-13-M12]">
      <seq>cgaggctggtctgttattcccacacctgagcataactggcagatattggtcatggtgctacagattaggaaaagtaagcacaagtgggtgtcccaaagtaacctatctgagtcttatattatcgactgcatagagtgtttgttggtcaattttaaaaaatggagcataacagaatttagatttcgttatccatttcatcttctcttactgttggtcttatggttgtgacatgggatgcatattgtttgaaaaacattccattatgttcattactcatatcaagttgtttttgttggttcagtattgttcttaatttgttactttagtccattaggaaaatattcctctagaattacgaggcaacttattgtaattttaatagttttctcttttcttttactggcttgaacctgcaggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctcttgtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30318" stop="31858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30614" g_stop="31123" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31493" g_stop="31558" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="579" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E480289" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30614" e_stop="31123"/>
          <exon e_start="31493" e_stop="31558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGCTGGTCTGTTATTCCCACA-CTGAGCATAACTGGCACATA-TGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAG-CCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTT</genome_strand>
        <mrna_strand>CGAGGCTGGTCTGTTATTCCCACACCTGAGCATAACTGGCAGATATTGGTCATGGTGCTACAGATTAGGAAAAGTAAGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTAAAAAATGGAGCATAACAGAATTTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTATGTTCATTACTCATATCAAGTTGTTTTTGTTGGTTCAGTATTGTTCTTAATTTGTTACTTTAGTCCATTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAGTTTTCTCTTTTCTTTTACTGGCTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTTGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428536" ref_strand="+" ref_description="SGN-E428536 [STM-50-D5]">
      <seq>ctggtctgttattcccacactgagcataactggcagatatggtcatggtgctacagattaggaaaagtaagcacaagtgggtgtcccaaagtaacctatctgagtcttatattatcgactgcatagagtgtttgttggtcaattttaaaaaatggagcataacagaatttagatttcgttatccatttcatcttctcttactgttggtcttatggttgtgacatgggatgcatattgtttgaaaaacattccattatgttcattactcatatcaagttgtttttgttggttcagtattgttcttaatttgttactttagtccattaggaaaatattcctctagaattacgaggcaacttattgtaattttaatagttttctcttttcttttactggcttgaacctgcaggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctcttgtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtggtggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtcttttagcactgacacgtgttggcagtagaaaagtgntcagatatctgctgcgttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30319" stop="33328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30619" g_stop="31123" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31493" g_stop="31579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="593" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32811" g_stop="32869" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="652" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32955" g_stop="33028" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="725" r_length="73" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E428536" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30619" e_stop="31123"/>
          <exon e_start="31493" e_stop="31579"/>
          <exon e_start="32811" e_stop="32869"/>
          <exon e_start="32955" e_stop="33028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAG-CCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGA</genome_strand>
        <mrna_strand>CTGGTCTGTTATTCCCACACTGAGCATAACTGGCAGATATGGTCATGGTGCTACAGATTAGGAAAAGTAAGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTAAAAAATGGAGCATAACAGAATTTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTATGTTCATTACTCATATCAAGTTGTTTTTGTTGGTTCAGTATTGTTCTTAATTTGTTACTTTAGTCCATTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAGTTTTCTCTTTTCTTTTACTGGCTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTTGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGGTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTTTTAGCACTGACACGTGTTGGCAGTAGAAAAG-TGNTCAGATATCTGCTGCGTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558412" ref_strand="+" ref_description="SGN-E558412 [17748]">
      <seq>agtggtgctcatggattagtatccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctcttggtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcaggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtcttttagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttgtattgccttttcttcgcttatgtaggcgctggaggcttaggctttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtaatactgctgttgctggttatggacctgttcaccacacatgcaaagatggttcaacgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30721" stop="33810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31027" g_stop="31123" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="110" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31493" g_stop="31579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="196" r_length="86" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32811" g_stop="32869" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="255" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32955" g_stop="33046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="347" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33155" g_stop="33232" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="425" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33342" g_stop="33502" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="589" r_length="164" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89">
            <donor d_prob="0.993" d_score="0.87"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33592" g_stop="33601" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="599" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E558412" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31027" e_stop="31123"/>
          <exon e_start="31493" e_stop="31579"/>
          <exon e_start="32811" e_stop="32869"/>
          <exon e_start="32955" e_stop="33046"/>
          <exon e_start="33155" e_stop="33232"/>
          <exon e_start="33342" e_stop="33502"/>
          <exon e_start="33592" e_stop="33601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTC-TAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGT-ATACTGCTGTTGCTGGTTATGGACCTGTTCA-CACACATGC-AAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACA</genome_strand>
        <mrna_strand>GATTAGTA-TCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTTGGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTTTTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTGTATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGCTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTAATACTGCTGTTGCTGGTTATGGACCTGTTCACCACACATGCAAAGATGG.........................................................................................TTCAACGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699271" ref_strand="+" ref_description="SGN-E699271 [FA09BE12]">
      <seq>attccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctctagtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttatattgccttttcttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30734" stop="33780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31034" g_stop="31123" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31493" g_stop="31579" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="177" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32811" g_stop="32869" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32955" g_stop="33046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="328" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33155" g_stop="33232" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109">
            <donor d_prob="0.272" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33342" g_stop="33480" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="545" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E699271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31034" e_stop="31123"/>
          <exon e_start="31493" e_stop="31579"/>
          <exon e_start="32811" e_stop="32869"/>
          <exon e_start="32955" e_stop="33046"/>
          <exon e_start="33155" e_stop="33232"/>
          <exon e_start="33342" e_stop="33480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACC</genome_strand>
        <mrna_strand>ATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715144" ref_strand="+" ref_description="SGN-E715144 [FB13BH07]">
      <seq>atcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttatattgccttttcttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgcctttttcctggacaacacaatgcacaaaaaggatggccagacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattctactccctccctttcaatctgaacaagtatttcccatctgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatctgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaattttcttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaaagcatccttttatgaattataattaacagtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32640" stop="34374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32855" g_stop="32869" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32955" g_stop="33046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="107" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33155" g_stop="33232" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="185" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109">
            <donor d_prob="0.272" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33342" g_stop="33502" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="346" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33592" g_stop="34074" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="829" r_length="483" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E715144" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32855" e_stop="32869"/>
          <exon e_start="32955" e_stop="33046"/>
          <exon e_start="33155" e_stop="33232"/>
          <exon e_start="33342" e_stop="33502"/>
          <exon e_start="33592" e_stop="34074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</genome_strand>
        <mrna_strand>ATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAAGCATCCTTTTATGAATTATAATTAACAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390268" ref_strand="+" ref_description="SGN-E390268 [TUS-40-I11](-)">
      <seq>gcttcaattcctgcacctattgttggtgccttatattgccttttcttcgcttaagtaggcgctggaggcttaggttttcttcagttttgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtaattcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgccttttttctggacaacacaatgcacaaaaaggatggcctgacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattttactccctccctttcaatttgaacaagtatttcccatttgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatttgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaatttttttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaagcaatccttttagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32875" stop="34362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33175" g_stop="33232" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109">
            <donor d_prob="0.272" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33342" g_stop="33502" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="219" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33592" g_stop="34051" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="679" r_length="460" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="698"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390268" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33175" e_stop="33232"/>
          <exon e_start="33342" e_stop="33502"/>
          <exon e_start="33592" e_stop="34051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</genome_strand>
        <mrna_strand>GCTTCAATTCCTGCACCTATTGTTGGTGCCTTATATTGCCTTTTCTTCGCTTAAGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTTTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTAATTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTTCTGGACAACACAATGCACAAAAAGGATGGCCTGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTTTACTCCCTCCCTTTCAATTTGAACAAGTATTTCCCATTTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATTTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTTTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390478" ref_strand="+" ref_description="SGN-E390478 [TUS-40-G11](-)">
      <seq>cacctattgttggtgctttatattgccttttttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaattttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgccttttttctggacaacacaatgcacaaaaaggatggccagacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattttactccctccctttcaatttgaacaagtatttcccatttgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatttgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaatttttttttttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaagcaatccttttagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32888" stop="34362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33188" g_stop="33232" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33342" g_stop="33502" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="205" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33592" g_stop="34051" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="665" r_length="460" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390478" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33188" e_stop="33232"/>
          <exon e_start="33342" e_stop="33502"/>
          <exon e_start="33592" e_stop="34051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</genome_strand>
        <mrna_strand>CACCTATTGTTGGTGCTTTATATTGCCTTTT-TTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATTTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTTCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTTTACTCCCTCCCTTTCAATTTGAACAAGTATTTCCCATTTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATTTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTTTTTTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390250" ref_strand="+" ref_description="SGN-E390250 [TUS-40-E7](-)">
      <seq>gaattttactccctccccctcaatcttgaacaagtatttcccatttctgtgatttggggacgccacggacacaaaggtttcatttttttactagtaagtactagagttcatctgtggttgttggagagggggggaggtaggttggtggtgcaacatcaatttttttttttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattccactttaactagcaattgagcaagcaatccttttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33460" stop="34362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33760" g_stop="34055" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="313"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390250" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33760" e_stop="34055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTACTCCCTCCCTTTCAATC-TGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGA</genome_strand>
        <mrna_strand>GAATTTTACTCCCTCCCCCTCAATCTTGAACAAGTATTTCCCATTTCTGTGATTTGGGGACGCCACGGACACAAAGGTTTCATTTTTTTACTAGTAAGTACTAGAGTTCATCTGTGGTTGTTGGAGAGGGGGGGAGGTAGGTTGGTGGTGCAACATCAATTTTTTTTTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCCACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390439" ref_strand="+" ref_description="SGN-E390439 [TUS-39-H12](-)">
      <seq>gaattttactcccttcctttcaatttgaacaagtattttccatttgtgtgatttggcgacgccacggacgcaaagggttcatctttttactagtaagtactagagttcatctgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaatttttttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttgggttcaactttaactagcaattgagcaagcaatccttttatggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33460" stop="34362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33760" g_stop="34055" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="312"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E390439" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33760" e_stop="34055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGA</genome_strand>
        <mrna_strand>GAATTTTACTCCCTTCCTTTCAATTTGAACAAGTATTTTCCATTTGTGTGATTTGGCGACGCCACGGACGCAAAGGGTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTTTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGGTTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578289" ref_strand="+" ref_description="SGN-E578289 [LE12BH06]">
      <seq>tttgtttgatttcacataatttaaaaaccattttacaatttttctatttttttcatgcaagacaaaaaaaaaaattgtcctagtgttttgttgtacactgatttactgctaattataattcataaaaggattgcttgctcaattgctagttaaagttgaatccaaatgatccataaatttacaacagtaggaaatacttaaactaataactgttgttctaagcttcttcatacttcatttctcatgaaagaagaaaattgatgttgcagcagcaacctacctccccccctctccaacaagcacagatgaactctagtacttactagtaaaaagatgaaacctttgtgtccgtggcgtcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34474" stop="33514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34174" g_stop="33814" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E578289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34174" e_stop="33814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGATTTCACATAATTTAAAAACCATTTTACAATTTTTCTATTTTTTTCATGCAAGACAAAAAAAAAAATTGTCCTAGTGTTTTGTTGTACACTGATTTACTGCTAATTATAATTCATAAAAGGATTGCTTGCTCAATTGCTAGTTAAAGTTGAATCCAAATGATCCATAAATTTACAACAGTAGGAAATACTTAAACTAATAACTGTTGTTCTAAGCTTCTTCATACTTCATTTCTCATGAAAGAAGAAAATTGATGTTGCAGCAGCAACCTACCTCCCCCCCTCTCCAACAAGCACAGATGAACTCTAGTACTTACTAGTAAAAAGATGAAACCTTTGTGTCCGTGGCGTCGCC</genome_strand>
        <mrna_strand>TTTGTTTGATTTCACATAATTTAAAAACCATTTTACAATTTTTCTATTTTTTTCATGCAAGACAAAAAAAAAAATTGTCCTAGTGTTTTGTTGTACACTGATTTACTGCTAATTATAATTCATAAAAGGATTGCTTGCTCAATTGCTAGTTAAAGTTGAATCCAAATGATCCATAAATTTACAACAGTAGGAAATACTTAAACTAATAACTGTTGTTCTAAGCTTCTTCATACTTCATTTCTCATGAAAGAAGAAAATTGATGTTGCAGCAGCAACCTACCTCCCCCCCTCTCCAACAAGCACAGATGAACTCTAGTACTTACTAGTAAAAAGATGAAACCTTTGTGTCCGTGGCGTCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566266" ref_strand="+" ref_description="SGN-E566266 [4705]">
      <seq>ttttttttgagatatttttcatcataaaaatccatgagaattttcaaaacaagcacaacaacaattacaatgtgtttggtagagaaaaaaaagattgtattggtcaatggtggcattaaagcacaaacccatagacatataaacacaaaatgaaggaaactcttctcttgactctcattaagatgtcatatatagatatatgtaataagtcttgaattgtatgtatgaaccagaacaagcaaactggtccagctcccgactgaaagtcgattaccctttatgtttcaaactcaaactcagatgaaaatgttcacggcaacgactcgtgatattgtgctctcagtcatccctttagtttttctcatggtcttccatattggctgaagttgactctctccttgaagagttgagtgtgatggtgcctacagtacactctatgctcatgaggctacatagtttgatggactgatcacgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39653" stop="40707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39953" g_stop="40408" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="477" r_length="459" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E566266" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39953" e_stop="40408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATAAAAATCCATGAGAATTTTCAGAACAAGCATAACAGCAATTGCAGTGTGTTTGGTAGAGAAAAAAAAGATTGTATTGGTCAATGGTGGCATTAAAGCACAAAACCATAGGCATATAAACACAAAATGAAGGAAACTCTTCTCTTGACTCTCATGAAGATGTCATATAATAGATATATGTAATAAGTCTTGAATTGTATGTATGAACCAGAACAA-CAATTTGGTTCAGCTCCCGACTGAAAGTCGATTACCCTTTATGTTTTAAACTCAAACTGAGATGAAAATGTTCACGGCTA-GGCTCGTGATATTGTGCTCTCAGTCATCCCTTTAGTTTTTCTCATGGTCTTCCAT-TTGGCTGAAGTTGCCTCTCTCCTTGAAAAGTTGAGTGTGATGGTGCCTACAGTACAATCTATGCTCATGA-GCTACATAGTTTGATGGACTGATCACACAG</genome_strand>
        <mrna_strand>TCATCATAAAAATCCATGAGAATTTTCAAAACAAGCACAACAACAATTACAATGTGTTTGGTAGAGAAAAAAAAGATTGTATTGGTCAATGGTGGCATTAAAGCACAAACCCATAGACATATAAACACAAAATGAAGGAAACTCTTCTCTTGACTCTCATTAAGATGTCATAT-ATAGATATATGTAATAAGTCTTGAATTGTATGTATGAACCAGAACAAGCAAACTGGTCCAGCTCCCGACTGAAAGTCGATTACCCTTTATGTTTCAAACTCAAACTCAGATGAAAATGTTCACGGCAACGACTCGTGATATTGTGCTCTCAGTCATCCCTTTAGTTTTTCTCATGGTCTTCCATATTGGCTGAAGTTGACTCTCTCCTTGAAGAGTTGAGTGTGATGGTGCCTACAGTACACTCTATGCTCATGAGGCTACATAGTTTGATGGACTGATCACGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308353" ref_strand="+" ref_description="SGN-E308353 [cLEY-25-K13]">
      <seq>gaaaactgtcagggaacgttccgcggatcagggatcaaacagtaaggtttgaagtttgtttggcggaactcaagataaatgtgttgcttgcaagaaaactgtctatccactagaaaaggtagcagtggatggcacttcgtaccacaggccttgtttcaaatgcagccatggaggctgtgtgatcagtccatcaaactatgtagctcatgagcatagattgtactgtaggcaccatcacactcaacttttcaaggagagaggcaacttcagccaaatggaagaccatgagaaaaactaaagggatgactgagagcacaatatcacgagcctagccgtgaacattttcatctcagtttgagtttaaaacataaagggtaatcgactttcagtcgggagctgaaccaaattgttgttctggttcatacatacaattcaagacttattacatatatctattatatgacatcttcatgagagtcaagagaagagtttccttcattttgtgtttaaaaaaaaaagaacccctaaagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41188" stop="39772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40888" g_stop="40858" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40857" i_stop="40753" i_length="105">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40752" g_stop="40666" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="118" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40665" i_stop="40465" i_length="201">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40464" g_stop="40075" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="508" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E308353" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40888" e_stop="40858"/>
          <exon e_start="40752" e_stop="40666"/>
          <exon e_start="40464" e_stop="40075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTGTCAGGGAACGTTCCGCGGATCAGGTATTATTTGAACACACTTCCTCTAGCACTTTTACAACATACATTTTTGTCCATTTCAGTTTGCCTGCTGATCTTATAATTGATTGCCTCGTATTTATCTCCCAGGGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAGGTATTGACAATTTCTTTTGTTGTCCCAATGTGCAGACTAGAGCAGAACAGGTTATTTCAAACTACTTTAGTGCAAATTTGAAAAGCTGAGCTCTCTTTAGGAATCCATGGATTAGTGCCTGTGCCTCTAACTCGGCATATCTGAAATGTTATTTTCTTCTTAGATCAAGCTTACAGATTAATGTCACTACTGCTTTTGTAGGTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAGGCACCATCACACTCAACTTTTCAAGGAGAGAGGCAACTTCAGCCAAATGGAAGACCATGAGAAAAACTAAAGGGATGACTGAGAGCACAATATCACGAGCCTAGCCGTGAACATTTTCATCTCAGTTTGAGTTTAAAACATAAAGGGTAATCGACTTTCAGTCGGGAGCTGAACCAAATTGTTGTTCTGGTTCATACATACAATTCAAGACTTATTACATATATCTATTATATGACATCTTCATGAGAGTCAAGAGAAGAGTTTCCTTCATTTTGTGTTT</genome_strand>
        <mrna_strand>GAAAACTGTCAGGGAACGTTCCGCGGATCAG.........................................................................................................GGATCAAACAGTAAGGTTTGAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAG.........................................................................................................................................................................................................GTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAGGCACCATCACACTCAACTTTTCAAGGAGAGAGGCAACTTCAGCCAAATGGAAGACCATGAGAAAAACTAAAGGGATGACTGAGAGCACAATATCACGAGCCTAGCCGTGAACATTTTCATCTCAGTTTGAGTTTAAAACATAAAGGGTAATCGACTTTCAGTCGGGAGCTGAACCAAATTGTTGTTCTGGTTCATACATACAATTCAAGACTTATTACATATATCTATTATATGACATCTTCATGAGAGTCAAGAGAAGAGTTTCCTTCATTTTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299998" ref_strand="+" ref_description="SGN-E299998 [cLEW-11-O18]">
      <seq>aaatggcaagttttggagggacaactcagaagtgtaaggcttgtgaaaaaactgtttacttggtggatcagcttactgctgacaataaggtttatcataaagcttgtttcagatgccaccattgtaagggtacactcaagctgagtaattataactccttcgaaggagttttgtactgccgacctcactttgatcagctattcaaaatgacaggaagtctggataagagtttcgaaggggctccgaaaactgtcagggaacgttccgcggatcagggatcaaacagtaaggtttcaagtttgtttggcggaactcaagataaatgtgttgcttgcaagaaaactgtctatccactagaaaaggtagcagtggatggcacttcgtaccacaggccttgtttcaaatgcagccatggaggctgtgtgatcagtccatcaaactatgtagctcatgagcatagattgtactgtaggcaccatcacactcaacttttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43576" stop="40029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43276" g_stop="43137" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43136" i_stop="41096" i_length="2041">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41095" g_stop="40999" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="237" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40998" i_stop="40896" i_length="103">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40895" g_stop="40858" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="275" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40857" i_stop="40753" i_length="105">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40752" g_stop="40666" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="362" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40665" i_stop="40465" i_length="201">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40464" g_stop="40329" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="498" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E299998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43276" e_stop="43137"/>
          <exon e_start="41095" e_stop="40999"/>
          <exon e_start="40895" e_stop="40858"/>
          <exon e_start="40752" e_stop="40666"/>
          <exon e_start="40464" e_stop="40329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCAGATGCCACCATTGTAAGGGTACACTCAAGGTGAGTACACATTAAAAGTCTGATCTTTTTCTTGTTAAATGTGGTTTTGTGCTTTTATCTTGCTTGATGTTATATGTGGTGTACATTCATATGTGAAATCAATGTTATTTCCTACTGTTAGATAGAATTGTAATGTTGTAATTGGTCTCAAGAGAGGAGGGCAAGAAGAGGGTAGGGTTTATGTTGAATAGTGAAAAAGGGAGGGGTGGTGTTCTTTTATGGATTTGGACAATTCTCAACTTCGTGAGCTAGTTTATTGAGTTGAGTTAGATTCAAGATTCGTACCAATTATTGTGTATGATGTTGGGTTCCCATTTTGAGTTGCCCACATACTAGACGTCTAGCCGTGGGCGTGGGCGTGGGGTGTTTAAGATTCCCACAAGGGGATGGGTGGTCTCTTATATGGACTTGCGCAATCCTCTCCTTGTGAACTGGCTTTTGAGGGTTGAGTTAGGTCCAAGATCCATTTTTTTAAATAGTTTTAGTATTTGAATCTGCAACCAGAAGTTGCAAGCTTGCAACTTTGATGTCTTACTGTGCTTTGTTAGAAATGAATGATTGGGTTTGGTTGGGGGATCCATGATGCTCTTCTGTTTATCCCAAAAGAACAGAGATTTTCGACTAATAGATGCTTTCTCTGTTAGGTTATGTTTGTCAGATTGTTTTGATATGCCTCTTTCAAAGGTTTGAGTTTTGGATACTTATGTAAGCTTTCTGCAATTGTTAGTGAAGAGTAATTGTTTGATAGTATTAAGGTTAACCGTGATTTACCTCTTTCAAAGGTTTGAGTTTTAGATACTTATTTAAGCTTTCAGCAATTGTTAGTGAAGAGTGATTGCTTGATAGTGTTAAGGTTAACCGATGTGATGTTAACTTGATGAAAAATGAGACATCTATCAGGGGAATCTCTGGACTCCCTTTACTGAGTAAAATTTTGACCAAAATTGGTCTGTGAAATGTAATTACATGGACTCTAGGGAACTATGGCTTTAAGATTCACATATAAACATTCAAATGAGATTTGGTAGAAGTTTACATTATTTATTTAAAGAAGCTGTTTTTCATGACCAAGAATCGTCTGAGGCTAGTCTTTAGGACCAACTGCAACTCTCGAAACTCAGGGTTGATGGGCCTTCCCCTCTTAAATATTAGGCTTAGTTCGCATGACACAGGGCTCAAACTTGTGGCCTGAGTTTTAAGTCCTTCAACCTTTGTCACTTGAACTTGGTAGCCATATAGAGGAAAAAGTTGTTTCTTCTTTGAAATGTCTCACGTCAGTTAATATCATTTCAATAGCCAACTAGTTGTGTTTGTGTTCCCATCTTCACCTTTATGCCGACCAATTTTGACTAGTTAACTTGAGAATCCTGGTTTATTAATTGACACTTAACATTATTGCCCATTCAAATATGCTTAATACTAAGTAAGTGAAACCGGCTGGTGGTTTCTTGGTCATGACTAGCTAGGGCTAAAGTTCCAAATTACATATAGGAATTAAACAAGAATACTCTATTGGGTGAAGAATACATGAGCTCTGTTCCTCTTTTTCTTCTTTTAGGAATGAAATATGCAAGAATGACATTTAAAGAGGCACAAGAAGACATACCATCAAAATTAATCATTTATGTGAAAATTTTGCCTTTAGTCTTTACCTGAGAAGTTAAGCAGAGTATTTGCAACTGCATCCTGCTGTACTAACTTTATCGATTGTGAAACTTGACTCCATCTATCAGTAATTGTGCTACTGTAATTGTTGTTCAACTCTGATTTGCGGAGGCCATGAGACTTTTTATTCGTCCAACTTTGTTAGCATGGAATCTGGCATAGAAGTGCTATACAATTAGTTATACAGATGAAGATGTTTTGCTCCATCAACCAAAAGTACAAAATCTAGTGTAAACTTCTCAGACGGTCACAGTACTTGGAGTATATCTCCATTTTCTCCTTCATATGTTTAGCATCTCGTTAGCACCTTTTTTTCATGTGGTTAATTATAAGATGTCTTAATCTTATTTTCCTTGTCATTTTTAATGTTTTTTAGCTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAGGTAGTTACGATAGAGTTGACATGATGATTTTTCTTCTATTTCATTTTTCATCGCTACTCCTTCTAAAGCTAGTTTCTTCTTGTTTGTTATTTCTCTTTTCTAGGGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAGGTATTATTTGAACACACTTCCTCTAGCACTTTTACAACATACATTTTTGTCCATTTCAGTTTGCCTGCTGATCTTATAATTGATTGCCTCGTATTTATCTCCCAGGGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAGGTATTGACAATTTCTTTTGTTGTCCCAATGTGCAGACTAGAGCAGAACAGGTTATTTCAAACTACTTTAGTGCAAATTTGAAAAGCTGAGCTCTCTTTAGGAATCCATGGATTAGTGCCTGTGCCTCTAACTCGGCATATCTGAAATGTTATTTTCTTCTTAGATCAAGCTTACAGATTAATGTCACTACTGCTTTTGTAGGTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAGGCACCATCACACTCAACTTTTCAAGG</genome_strand>
        <mrna_strand>AAATGGCAAGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCAGATGCCACCATTGTAAGGGTACACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAG.......................................................................................................GGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAG.........................................................................................................GGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAG.........................................................................................................................................................................................................GTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAGGCACCATCACACTCAACTTTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300040" ref_strand="+" ref_description="SGN-E300040 [cLEW-11-P8]">
      <seq>aaatggcaagttttggagggacaactcacaagtgtaaggcttgtgaaaaaactgtttacttggtggatcagcttactgctgacaataaggtttatcataaagcttgtttcacatgccaccattgtaagggtacactcaagctgagtaattataactccttcgaaggagttttgtactgccgacctcactttgatcagctattcaaaatgacaggaagtctggataagagtttctaaggggctccgaaaactgtcagggaacgttccgcggatcagggatcaaacagtaaggtttcaagtttgtttggcggaactcaagataaatgtgttgcttgcaagaaaactgtctatccactagaaaaggtagcagtggatggcacttcgtaccacaggccttgtttcaaatgcagccatggaggctgtgtgatcagtccatcaaactatgtagctcatgagcatagattgtactgtaagcaccatcacactcaacttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43576" stop="40031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43276" g_stop="43137" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43136" i_stop="41096" i_length="2041">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41095" g_stop="40999" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="237" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40998" i_stop="40896" i_length="103">
            <donor d_prob="0.738" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40895" g_stop="40858" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="275" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40857" i_stop="40753" i_length="105">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40752" g_stop="40666" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="362" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40665" i_stop="40465" i_length="201">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40464" g_stop="40331" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="496" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E300040" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43276" e_stop="43137"/>
          <exon e_start="41095" e_stop="40999"/>
          <exon e_start="40895" e_stop="40858"/>
          <exon e_start="40752" e_stop="40666"/>
          <exon e_start="40464" e_stop="40331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCAGATGCCACCATTGTAAGGGTACACTCAAGGTGAGTACACATTAAAAGTCTGATCTTTTTCTTGTTAAATGTGGTTTTGTGCTTTTATCTTGCTTGATGTTATATGTGGTGTACATTCATATGTGAAATCAATGTTATTTCCTACTGTTAGATAGAATTGTAATGTTGTAATTGGTCTCAAGAGAGGAGGGCAAGAAGAGGGTAGGGTTTATGTTGAATAGTGAAAAAGGGAGGGGTGGTGTTCTTTTATGGATTTGGACAATTCTCAACTTCGTGAGCTAGTTTATTGAGTTGAGTTAGATTCAAGATTCGTACCAATTATTGTGTATGATGTTGGGTTCCCATTTTGAGTTGCCCACATACTAGACGTCTAGCCGTGGGCGTGGGCGTGGGGTGTTTAAGATTCCCACAAGGGGATGGGTGGTCTCTTATATGGACTTGCGCAATCCTCTCCTTGTGAACTGGCTTTTGAGGGTTGAGTTAGGTCCAAGATCCATTTTTTTAAATAGTTTTAGTATTTGAATCTGCAACCAGAAGTTGCAAGCTTGCAACTTTGATGTCTTACTGTGCTTTGTTAGAAATGAATGATTGGGTTTGGTTGGGGGATCCATGATGCTCTTCTGTTTATCCCAAAAGAACAGAGATTTTCGACTAATAGATGCTTTCTCTGTTAGGTTATGTTTGTCAGATTGTTTTGATATGCCTCTTTCAAAGGTTTGAGTTTTGGATACTTATGTAAGCTTTCTGCAATTGTTAGTGAAGAGTAATTGTTTGATAGTATTAAGGTTAACCGTGATTTACCTCTTTCAAAGGTTTGAGTTTTAGATACTTATTTAAGCTTTCAGCAATTGTTAGTGAAGAGTGATTGCTTGATAGTGTTAAGGTTAACCGATGTGATGTTAACTTGATGAAAAATGAGACATCTATCAGGGGAATCTCTGGACTCCCTTTACTGAGTAAAATTTTGACCAAAATTGGTCTGTGAAATGTAATTACATGGACTCTAGGGAACTATGGCTTTAAGATTCACATATAAACATTCAAATGAGATTTGGTAGAAGTTTACATTATTTATTTAAAGAAGCTGTTTTTCATGACCAAGAATCGTCTGAGGCTAGTCTTTAGGACCAACTGCAACTCTCGAAACTCAGGGTTGATGGGCCTTCCCCTCTTAAATATTAGGCTTAGTTCGCATGACACAGGGCTCAAACTTGTGGCCTGAGTTTTAAGTCCTTCAACCTTTGTCACTTGAACTTGGTAGCCATATAGAGGAAAAAGTTGTTTCTTCTTTGAAATGTCTCACGTCAGTTAATATCATTTCAATAGCCAACTAGTTGTGTTTGTGTTCCCATCTTCACCTTTATGCCGACCAATTTTGACTAGTTAACTTGAGAATCCTGGTTTATTAATTGACACTTAACATTATTGCCCATTCAAATATGCTTAATACTAAGTAAGTGAAACCGGCTGGTGGTTTCTTGGTCATGACTAGCTAGGGCTAAAGTTCCAAATTACATATAGGAATTAAACAAGAATACTCTATTGGGTGAAGAATACATGAGCTCTGTTCCTCTTTTTCTTCTTTTAGGAATGAAATATGCAAGAATGACATTTAAAGAGGCACAAGAAGACATACCATCAAAATTAATCATTTATGTGAAAATTTTGCCTTTAGTCTTTACCTGAGAAGTTAAGCAGAGTATTTGCAACTGCATCCTGCTGTACTAACTTTATCGATTGTGAAACTTGACTCCATCTATCAGTAATTGTGCTACTGTAATTGTTGTTCAACTCTGATTTGCGGAGGCCATGAGACTTTTTATTCGTCCAACTTTGTTAGCATGGAATCTGGCATAGAAGTGCTATACAATTAGTTATACAGATGAAGATGTTTTGCTCCATCAACCAAAAGTACAAAATCTAGTGTAAACTTCTCAGACGGTCACAGTACTTGGAGTATATCTCCATTTTCTCCTTCATATGTTTAGCATCTCGTTAGCACCTTTTTTTCATGTGGTTAATTATAAGATGTCTTAATCTTATTTTCCTTGTCATTTTTAATGTTTTTTAGCTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAGGTAGTTACGATAGAGTTGACATGATGATTTTTCTTCTATTTCATTTTTCATCGCTACTCCTTCTAAAGCTAGTTTCTTCTTGTTTGTTATTTCTCTTTTCTAGGGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAGGTATTATTTGAACACACTTCCTCTAGCACTTTTACAACATACATTTTTGTCCATTTCAGTTTGCCTGCTGATCTTATAATTGATTGCCTCGTATTTATCTCCCAGGGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAGGTATTGACAATTTCTTTTGTTGTCCCAATGTGCAGACTAGAGCAGAACAGGTTATTTCAAACTACTTTAGTGCAAATTTGAAAAGCTGAGCTCTCTTTAGGAATCCATGGATTAGTGCCTGTGCCTCTAACTCGGCATATCTGAAATGTTATTTTCTTCTTAGATCAAGCTTACAGATTAATGTCACTACTGCTTTTGTAGGTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAGGCACCATCACACTCAACTTTTCAA</genome_strand>
        <mrna_strand>AAATGGCAAGTTTTGGAGGGACAACTCACAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCACATGCCACCATTGTAAGGGTACACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCTAAG.......................................................................................................GGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAG.........................................................................................................GGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAG.........................................................................................................................................................................................................GTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAAGCACCATCACACTCAACTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319132" ref_strand="+" ref_description="SGN-E319132 [cTOB-16-K3]">
      <seq>gaaatggacggttttggagggacaactcagaagtgtaaggcttgtgaaaaaactgtttacttggtggatcagcttactgctgacaataaggtttatcataaagcttgtttcacatgccaccattgtaagggtacactcaagctgagtaattataactccttcgaaggagttttgtactgccgacctcactttgatcagctattcaaaatgacaggaagtctggataagagtttcgaatgggctccgaacactgtcacgtaacgttccgcggatcatggatcatacagtaaggtctcaagtttgtttggcggaactcaagataaatgtgttgcttgctagaaaactgtctatccactagaaaaggtagcaatggatggcacttcgtaccacaggccttgtttcaaatgcagccatggatgctgtgtgatcagtccatcaaactatgtagctcatgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43567" stop="40069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43277" g_stop="43137" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43136" i_stop="41096" i_length="2041">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41095" g_stop="40999" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="238" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40998" i_stop="40896" i_length="103">
            <donor d_prob="0.738" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40895" g_stop="40858" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="276" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40857" i_stop="40753" i_length="105">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40752" g_stop="40666" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40665" i_stop="40465" i_length="201">
            <donor d_prob="0.857" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40464" g_stop="40369" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="459" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E319132" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43277" e_stop="43137"/>
          <exon e_start="41095" e_stop="40999"/>
          <exon e_start="40895" e_stop="40858"/>
          <exon e_start="40752" e_stop="40666"/>
          <exon e_start="40464" e_stop="40369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGCAAGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCAGATGCCACCATTGTAAGGGTACACTCAAGGTGAGTACACATTAAAAGTCTGATCTTTTTCTTGTTAAATGTGGTTTTGTGCTTTTATCTTGCTTGATGTTATATGTGGTGTACATTCATATGTGAAATCAATGTTATTTCCTACTGTTAGATAGAATTGTAATGTTGTAATTGGTCTCAAGAGAGGAGGGCAAGAAGAGGGTAGGGTTTATGTTGAATAGTGAAAAAGGGAGGGGTGGTGTTCTTTTATGGATTTGGACAATTCTCAACTTCGTGAGCTAGTTTATTGAGTTGAGTTAGATTCAAGATTCGTACCAATTATTGTGTATGATGTTGGGTTCCCATTTTGAGTTGCCCACATACTAGACGTCTAGCCGTGGGCGTGGGCGTGGGGTGTTTAAGATTCCCACAAGGGGATGGGTGGTCTCTTATATGGACTTGCGCAATCCTCTCCTTGTGAACTGGCTTTTGAGGGTTGAGTTAGGTCCAAGATCCATTTTTTTAAATAGTTTTAGTATTTGAATCTGCAACCAGAAGTTGCAAGCTTGCAACTTTGATGTCTTACTGTGCTTTGTTAGAAATGAATGATTGGGTTTGGTTGGGGGATCCATGATGCTCTTCTGTTTATCCCAAAAGAACAGAGATTTTCGACTAATAGATGCTTTCTCTGTTAGGTTATGTTTGTCAGATTGTTTTGATATGCCTCTTTCAAAGGTTTGAGTTTTGGATACTTATGTAAGCTTTCTGCAATTGTTAGTGAAGAGTAATTGTTTGATAGTATTAAGGTTAACCGTGATTTACCTCTTTCAAAGGTTTGAGTTTTAGATACTTATTTAAGCTTTCAGCAATTGTTAGTGAAGAGTGATTGCTTGATAGTGTTAAGGTTAACCGATGTGATGTTAACTTGATGAAAAATGAGACATCTATCAGGGGAATCTCTGGACTCCCTTTACTGAGTAAAATTTTGACCAAAATTGGTCTGTGAAATGTAATTACATGGACTCTAGGGAACTATGGCTTTAAGATTCACATATAAACATTCAAATGAGATTTGGTAGAAGTTTACATTATTTATTTAAAGAAGCTGTTTTTCATGACCAAGAATCGTCTGAGGCTAGTCTTTAGGACCAACTGCAACTCTCGAAACTCAGGGTTGATGGGCCTTCCCCTCTTAAATATTAGGCTTAGTTCGCATGACACAGGGCTCAAACTTGTGGCCTGAGTTTTAAGTCCTTCAACCTTTGTCACTTGAACTTGGTAGCCATATAGAGGAAAAAGTTGTTTCTTCTTTGAAATGTCTCACGTCAGTTAATATCATTTCAATAGCCAACTAGTTGTGTTTGTGTTCCCATCTTCACCTTTATGCCGACCAATTTTGACTAGTTAACTTGAGAATCCTGGTTTATTAATTGACACTTAACATTATTGCCCATTCAAATATGCTTAATACTAAGTAAGTGAAACCGGCTGGTGGTTTCTTGGTCATGACTAGCTAGGGCTAAAGTTCCAAATTACATATAGGAATTAAACAAGAATACTCTATTGGGTGAAGAATACATGAGCTCTGTTCCTCTTTTTCTTCTTTTAGGAATGAAATATGCAAGAATGACATTTAAAGAGGCACAAGAAGACATACCATCAAAATTAATCATTTATGTGAAAATTTTGCCTTTAGTCTTTACCTGAGAAGTTAAGCAGAGTATTTGCAACTGCATCCTGCTGTACTAACTTTATCGATTGTGAAACTTGACTCCATCTATCAGTAATTGTGCTACTGTAATTGTTGTTCAACTCTGATTTGCGGAGGCCATGAGACTTTTTATTCGTCCAACTTTGTTAGCATGGAATCTGGCATAGAAGTGCTATACAATTAGTTATACAGATGAAGATGTTTTGCTCCATCAACCAAAAGTACAAAATCTAGTGTAAACTTCTCAGACGGTCACAGTACTTGGAGTATATCTCCATTTTCTCCTTCATATGTTTAGCATCTCGTTAGCACCTTTTTTTCATGTGGTTAATTATAAGATGTCTTAATCTTATTTTCCTTGTCATTTTTAATGTTTTTTAGCTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAGGTAGTTACGATAGAGTTGACATGATGATTTTTCTTCTATTTCATTTTTCATCGCTACTCCTTCTAAAGCTAGTTTCTTCTTGTTTGTTATTTCTCTTTTCTAGGGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAGGTATTATTTGAACACACTTCCTCTAGCACTTTTACAACATACATTTTTGTCCATTTCAGTTTGCCTGCTGATCTTATAATTGATTGCCTCGTATTTATCTCCCAGGGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAGGTATTGACAATTTCTTTTGTTGTCCCAATGTGCAGACTAGAGCAGAACAGGTTATTTCAAACTACTTTAGTGCAAATTTGAAAAGCTGAGCTCTCTTTAGGAATCCATGGATTAGTGCCTGTGCCTCTAACTCGGCATATCTGAAATGTTATTTTCTTCTTAGATCAAGCTTACAGATTAATGTCACTACTGCTTTTGTAGGTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCAT</genome_strand>
        <mrna_strand>GAAATGGACGGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCACATGCCACCATTGTAAGGGTACACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAT.......................................................................................................GGGCTCCGAACACTGTCACGTAACGTTCCGCGGATCAT.........................................................................................................GGATCATACAGTAAGGTCTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCTAGAAAACTGTCTATCCACTAGAAAAG.........................................................................................................................................................................................................GTAGCAATGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGATGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300164" ref_strand="+" ref_description="SGN-E300164 [cLEW-11-P16]">
      <seq>aaatggcaagttttggagggacaactcacaagtgtaaggcttgtgaaaaaactgtttacttggtggatcatcttactgctgacaataatgtttatcataaagcttgtttcatatgccaccattgtaagggtacactcaagctgagtaattataactccttcgaaggagttttgtactgccgacctcactttgatcagctattcaaaatgacaggaagtctggataaaagtttccaaggggctccgaaaactgtcacggaacgttccgcggatcatggatcaaacagtaaggtttcaagtttgttttgcggaactcaagataaatgtgtttcttgcaagaaaactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43576" stop="40381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43276" g_stop="43137" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43136" i_stop="41096" i_length="2041">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41095" g_stop="40999" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="237" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40998" i_stop="40896" i_length="103">
            <donor d_prob="0.738" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40895" g_stop="40858" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="275" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40857" i_stop="40753" i_length="105">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40752" g_stop="40681" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="347" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E300164" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43276" e_stop="43137"/>
          <exon e_start="41095" e_stop="40999"/>
          <exon e_start="40895" e_stop="40858"/>
          <exon e_start="40752" e_stop="40681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCAGATGCCACCATTGTAAGGGTACACTCAAGGTGAGTACACATTAAAAGTCTGATCTTTTTCTTGTTAAATGTGGTTTTGTGCTTTTATCTTGCTTGATGTTATATGTGGTGTACATTCATATGTGAAATCAATGTTATTTCCTACTGTTAGATAGAATTGTAATGTTGTAATTGGTCTCAAGAGAGGAGGGCAAGAAGAGGGTAGGGTTTATGTTGAATAGTGAAAAAGGGAGGGGTGGTGTTCTTTTATGGATTTGGACAATTCTCAACTTCGTGAGCTAGTTTATTGAGTTGAGTTAGATTCAAGATTCGTACCAATTATTGTGTATGATGTTGGGTTCCCATTTTGAGTTGCCCACATACTAGACGTCTAGCCGTGGGCGTGGGCGTGGGGTGTTTAAGATTCCCACAAGGGGATGGGTGGTCTCTTATATGGACTTGCGCAATCCTCTCCTTGTGAACTGGCTTTTGAGGGTTGAGTTAGGTCCAAGATCCATTTTTTTAAATAGTTTTAGTATTTGAATCTGCAACCAGAAGTTGCAAGCTTGCAACTTTGATGTCTTACTGTGCTTTGTTAGAAATGAATGATTGGGTTTGGTTGGGGGATCCATGATGCTCTTCTGTTTATCCCAAAAGAACAGAGATTTTCGACTAATAGATGCTTTCTCTGTTAGGTTATGTTTGTCAGATTGTTTTGATATGCCTCTTTCAAAGGTTTGAGTTTTGGATACTTATGTAAGCTTTCTGCAATTGTTAGTGAAGAGTAATTGTTTGATAGTATTAAGGTTAACCGTGATTTACCTCTTTCAAAGGTTTGAGTTTTAGATACTTATTTAAGCTTTCAGCAATTGTTAGTGAAGAGTGATTGCTTGATAGTGTTAAGGTTAACCGATGTGATGTTAACTTGATGAAAAATGAGACATCTATCAGGGGAATCTCTGGACTCCCTTTACTGAGTAAAATTTTGACCAAAATTGGTCTGTGAAATGTAATTACATGGACTCTAGGGAACTATGGCTTTAAGATTCACATATAAACATTCAAATGAGATTTGGTAGAAGTTTACATTATTTATTTAAAGAAGCTGTTTTTCATGACCAAGAATCGTCTGAGGCTAGTCTTTAGGACCAACTGCAACTCTCGAAACTCAGGGTTGATGGGCCTTCCCCTCTTAAATATTAGGCTTAGTTCGCATGACACAGGGCTCAAACTTGTGGCCTGAGTTTTAAGTCCTTCAACCTTTGTCACTTGAACTTGGTAGCCATATAGAGGAAAAAGTTGTTTCTTCTTTGAAATGTCTCACGTCAGTTAATATCATTTCAATAGCCAACTAGTTGTGTTTGTGTTCCCATCTTCACCTTTATGCCGACCAATTTTGACTAGTTAACTTGAGAATCCTGGTTTATTAATTGACACTTAACATTATTGCCCATTCAAATATGCTTAATACTAAGTAAGTGAAACCGGCTGGTGGTTTCTTGGTCATGACTAGCTAGGGCTAAAGTTCCAAATTACATATAGGAATTAAACAAGAATACTCTATTGGGTGAAGAATACATGAGCTCTGTTCCTCTTTTTCTTCTTTTAGGAATGAAATATGCAAGAATGACATTTAAAGAGGCACAAGAAGACATACCATCAAAATTAATCATTTATGTGAAAATTTTGCCTTTAGTCTTTACCTGAGAAGTTAAGCAGAGTATTTGCAACTGCATCCTGCTGTACTAACTTTATCGATTGTGAAACTTGACTCCATCTATCAGTAATTGTGCTACTGTAATTGTTGTTCAACTCTGATTTGCGGAGGCCATGAGACTTTTTATTCGTCCAACTTTGTTAGCATGGAATCTGGCATAGAAGTGCTATACAATTAGTTATACAGATGAAGATGTTTTGCTCCATCAACCAAAAGTACAAAATCTAGTGTAAACTTCTCAGACGGTCACAGTACTTGGAGTATATCTCCATTTTCTCCTTCATATGTTTAGCATCTCGTTAGCACCTTTTTTTCATGTGGTTAATTATAAGATGTCTTAATCTTATTTTCCTTGTCATTTTTAATGTTTTTTAGCTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAGGTAGTTACGATAGAGTTGACATGATGATTTTTCTTCTATTTCATTTTTCATCGCTACTCCTTCTAAAGCTAGTTTCTTCTTGTTTGTTATTTCTCTTTTCTAGGGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAGGTATTATTTGAACACACTTCCTCTAGCACTTTTACAACATACATTTTTGTCCATTTCAGTTTGCCTGCTGATCTTATAATTGATTGCCTCGTATTTATCTCCCAGGGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTC</genome_strand>
        <mrna_strand>AAATGGCAAGTTTTGGAGGGACAACTCACAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCATCTTACTGCTGACAATAATGTTTATCATAAAGCTTGTTTCATATGCCACCATTGTAAGGGTACACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAAAGTTTCCAAG.......................................................................................................GGGCTCCGAAAACTGTCACGGAACGTTCCGCGGATCAT.........................................................................................................GGATCAAACAGTAAGGTTTCAAGTTTGTTTTGCGGAACTCAAGATAAATGTGTTTCTTGCAAGAAAACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320698" ref_strand="+" ref_description="SGN-E320698 [cTOB-27-D19]">
      <seq>tacatgaaaaagatggataagtgatgttactacttactactatcctttctaattttcctatttcattcatttcatgatttctctccaaaaaatagtaacactatctaattaatttattccaaaaaaaattatacatttctacgtttgaaatataatttgaatttaaatcaacattaaacgaataaaattcataaacatacaaatataagattgtgaaatattttcgtcgaaacaactttcataataaaatcaatgtagacgttaaatcctttcgacttcttttttgctcatttctttatatggtggctttttatatgaacaaaaatcactgatctaactactccctgcgccattttattcagtttctttacgtaagggtgaggtgattgtatcgagttatggcanatcgtaatgtaccaatccctcgtcgacagctgtacatcggcggagaatggagagaaccggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52844" stop="53911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53144" g_stop="53611" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E320698" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53144" e_stop="53611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGAAAAAGATGGATAAGTGATGTTACTACTTACTACTATCCTTTCTAATTTTCCTATTTCATTCATTTCATGATTTCTCTCCAAAAAATAGTAACACTATCTAATTAATTTATTCCAAAAAAAATTATACATTTCTACGTTTGAAATATAATTTGAATTTAAATCAACATTAAACGAATAAAATTCATAAACATACAAATATAAGATTGTGAAATATTTTCGTCGAAACAACTTTCATAATAAAATCAATGTAGACGTTAAATCCTTTCGACTTCTTTTTTGCTCATTTCTTTATATGGTGGCTTTTTATATGAACAAAAATCACTGATCTAACTACTCCCTGCGCCATTTTA-TCAGTTTTCTTTACGTAAGGGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCA</genome_strand>
        <mrna_strand>TACATGAAAAAGATGGATAAGTGATGTTACTACTTACTACTATCCTTTCTAATTTTCCTATTTCATTCATTTCATGATTTCTCTCCAAAAAATAGTAACACTATCTAATTAATTTATTCCAAAAAAAATTATACATTTCTACGTTTGAAATATAATTTGAATTTAAATCAACATTAAACGAATAAAATTCATAAACATACAAATATAAGATTGTGAAATATTTTCGTCGAAACAACTTTCATAATAAAATCAATGTAGACGTTAAATCCTTTCGACTTCTTTTTTGCTCATTTCTTTATATGGTGGCTTTTTATATGAACAAAAATCACTGATCTAACTACTCCCTGCGCCATTTTATTCAG-TTTCTTTACGTAAGGGTGAGGTGATTGTATCGAGTTATGGCANATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328899" ref_strand="+" ref_description="SGN-E328899 [cTOC-24-B19]">
      <seq>cctgcgccattttatcagttttctttacgtaagggtgaggtgattgtatcgagttatggcaaatcgtaatgtaccaatccctcgtcgacagctgtacatcggcggagaatggagagaaccggtcaagaagaaccggattccgataatcaatccggctactgaagaaatcatcggggatattccggcggctaccgcggaagatgtggatatagctgtggaagcagcacggaaagcgattgcgagggatgactggggttctacaacaggggcacaacgcgcaaaatacctccgtgctattgctgctaaggtactggagaagaaatccgtacttgcaacacttgaatcccttgatagtggaaaaacattgtatgagtctgctgcagatatggatgacgttgcaggatgttttgagtactatgcaggccttgctgaagctttggattcgagaaggatgactccggttaatcttaattcagattcatataaaagttatgttcttagagaacctcttggtgttgtgggattgataactccatggaattatccattgttaatggccatatggaaagttgcccctgctctggctgctggttgtgcagncatacttaagccatctgaactagcatcaattaccctgttggagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53187" stop="55836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53487" g_stop="53659" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53660" i_stop="53795" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53796" g_stop="53929" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="307" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53930" i_stop="54778" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54779" g_stop="54859" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="388" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54860" i_stop="54946" i_length="87">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54947" g_stop="55095" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="537" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55444" g_stop="55536" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="630" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55537" i_stop="55628" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55629" g_stop="55645" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="647" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E328899" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53487" e_stop="53659"/>
          <exon e_start="53796" e_stop="53929"/>
          <exon e_start="54779" e_stop="54859"/>
          <exon e_start="54947" e_stop="55095"/>
          <exon e_start="55444" e_stop="55536"/>
          <exon e_start="55629" e_stop="55645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCGCCATTTTATCAGTTTTCTTTACGTAAGGGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCGGTGCGTCAGATTAACATACTCTATTATATCAGTATTTGTAATCTGATTCTACTTTTCACTTTTTCTTTTTCTGTTGAATGTTGGTGAAGCACGTGAAAAACTCCGATGAGAGATTATGTTTAAATTGGATTTTCAGGGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCGAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATACCTCCGTGCTATTGCTGCTAAGGTTGTATAGTGTTCTGCATTGGCATCTTAATTTTACATATTCATATTTTTTTTTCAGGAATTTTATTAGAACCCTGGATAAAGGCAGTTACTAGTCCAGAAACAGAAAAGTTATCTATATTTCAATGCTGATTTCGTAATTATGTATGAGTTCGGAACAGTGTCAGCTCAAATTATACAGGATTTAGCGCTGTATTCTCTGAGTTACATCGAGATGGCGGTTCCTTCTGTTTTTGAAGGATTGAACTCAGGTATAGTGTAACTTTTAGGCGTAAAAGCTAGTTGGTTGACTCTAAGTACGGCTAGTGTGTCGACAGATAGTTAAATATTTCTCCATTGAAGGGTAGCTAGCTCTGAGAATATCAGGTCTACTACCTTGTACATAAAACTAAGACAAGTGAGTATTTTTTTATAGACACACTATTGAGTATTGGAGTGAAACAAATCACCAACTGGAGCGAAATGAATGTAGATGATTCGGTTTGAGATTAAAGCATAGTAATAGGTCTAGTGCGTATGTAATTTTACATTAGTGATTCTTCCAAGCTGTGAGCGCCTTTTGGATTGTCCTAAGCACAGATATTTATCTTCTATAGATGCCTGAAAAATAGTGCAGCTGTAGATGTCGCGGAGGATTCATTTTAGGGGCACATACCTTACTAATTTGAGAAAACAGAAAATTTCCACTCAAGTAGATTATGTTCTTGGATACTACTTACTAGTGAGCTGCTGTATATATTGCATTTCACCTGGTGTTGGCAAGATATTGGTACATTCTACAGGACTAATTGACTATTCTGCTTTTCTTTAAATGATTCATTTGCTAATTGTTTTAGATTTTTTTTCATAGGTACTGGAGAAGAAATCCGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTATGAGTCTGCTGCAGATATGGTACTTTCTTGCATAAATGAGATAAATATATTGTTCGCTTCAACTTGATGTACACAAATTTATTTTTTGTGCTGTCTTATATTTCAGGATGACGTTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATGGTAGGTGCCATTTTCAGAGTTATTACGTTTTTTCTTTAGTTTTACAAACCACAGACTGATCAGGTAGATGTTTGTGTACATATCTATATACACTGGTTGTTTTCGTGTCATTGACAAGCTAAAAGTAAGTCGTTATACTTTATCTGAGGTAGTCTGGCCGTCTGGTTAGTTCTTAAAATGTTGAAATATGGTTTGGAAATGAACAATATTCAGTTAACTAGTTGTCTCCTAGTTCAGCAATATATTTCATTGGAAAAGTTGGACCATAATCCTAATAAATGAACAATGAGAATGACATTCAAGCACACTTTTTCAAGTCAATGATCCTTTTTTTTTTTAATTATGAAGGAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAATGTGAGTCCTTATATCATATCATCTTCATTATCTATATCCTTGATCCGCATCATTTGCTCCTTTAATTAAATGACTCTGACATTCAATTGTAGTACCTGTTTGGAGTTGG</genome_strand>
        <mrna_strand>CCTGCGCCATTTTATCAGTTTTCTTTACGTAAGGGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCG........................................................................................................................................GGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCGAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATACCTCCGTGCTATTGCTGCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAGAAGAAATCCGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTATGAGTCTGCTGCAGATATG.......................................................................................GATGACGTTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG............................................................................................................................................................................................................................................................................................................................................................GAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGNCATACTTAAGCCATCTGAACTAGCATCAAT............................................................................................TACCCTGTTGGAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429210" ref_strand="+" ref_description="SGN-E429210 [STM-51-N13]">
      <seq>tttttttgcggtatccagattagttttctctacgtaacagtcttaaactgtgaggtgattgtatcgagttatggcaaatcgtaacgtaccaatcccacgtcgacagctgtacatcggcggagaatggagagaaccggtcaagaagaaccggattccgataatcaatccggctactgaagaaatcatcggggatattccggcggctaccgcggaagatgtggatatagctgtggaagcagcacggaaagcgattgctagggatgactggggttctacaacaggggcacaacgcgcaaaatatctccgtgctattgctgctaaggtactggagaagaaatctgtacttgcaacacttgaatcccttgatagtggaaaaacattgtttgagtctgctgcagatatggacgatgtcgcaggatgttttgagtactatgcagacctcgctgaagctttggattcgagaaggaagactcctgtcaatcttaattcggattcatttaaaacttatgttcttagagaacctcttggtgttgtgggattgataactccatggaattatccattgttaatggccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53196" stop="55770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53520" g_stop="53659" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="188" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53660" i_stop="53795" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53796" g_stop="53929" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="322" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53930" i_stop="54778" i_length="849">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54779" g_stop="54859" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="403" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54860" i_stop="54946" i_length="87">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54947" g_stop="55095" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="552" r_length="149" r_score="0.926"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55444" g_stop="55470" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="579" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E429210" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53520" e_stop="53659"/>
          <exon e_start="53796" e_stop="53929"/>
          <exon e_start="54779" e_stop="54859"/>
          <exon e_start="54947" e_stop="55095"/>
          <exon e_start="55444" e_stop="55470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCGGTGCGTCAGATTAACATACTCTATTATATCAGTATTTGTAATCTGATTCTACTTTTCACTTTTTCTTTTTCTGTTGAATGTTGGTGAAGCACGTGAAAAACTCCGATGAGAGATTATGTTTAAATTGGATTTTCAGGGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCGAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATACCTCCGTGCTATTGCTGCTAAGGTTGTATAGTGTTCTGCATTGGCATCTTAATTTTACATATTCATATTTTTTTTTCAGGAATTTTATTAGAACCCTGGATAAAGGCAGTTACTAGTCCAGAAACAGAAAAGTTATCTATATTTCAATGCTGATTTCGTAATTATGTATGAGTTCGGAACAGTGTCAGCTCAAATTATACAGGATTTAGCGCTGTATTCTCTGAGTTACATCGAGATGGCGGTTCCTTCTGTTTTTGAAGGATTGAACTCAGGTATAGTGTAACTTTTAGGCGTAAAAGCTAGTTGGTTGACTCTAAGTACGGCTAGTGTGTCGACAGATAGTTAAATATTTCTCCATTGAAGGGTAGCTAGCTCTGAGAATATCAGGTCTACTACCTTGTACATAAAACTAAGACAAGTGAGTATTTTTTTATAGACACACTATTGAGTATTGGAGTGAAACAAATCACCAACTGGAGCGAAATGAATGTAGATGATTCGGTTTGAGATTAAAGCATAGTAATAGGTCTAGTGCGTATGTAATTTTACATTAGTGATTCTTCCAAGCTGTGAGCGCCTTTTGGATTGTCCTAAGCACAGATATTTATCTTCTATAGATGCCTGAAAAATAGTGCAGCTGTAGATGTCGCGGAGGATTCATTTTAGGGGCACATACCTTACTAATTTGAGAAAACAGAAAATTTCCACTCAAGTAGATTATGTTCTTGGATACTACTTACTAGTGAGCTGCTGTATATATTGCATTTCACCTGGTGTTGGCAAGATATTGGTACATTCTACAGGACTAATTGACTATTCTGCTTTTCTTTAAATGATTCATTTGCTAATTGTTTTAGATTTTTTTTCATAGGTACTGGAGAAGAAATCCGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTATGAGTCTGCTGCAGATATGGTACTTTCTTGCATAAATGAGATAAATATATTGTTCGCTTCAACTTGATGTACACAAATTTATTTTTTGTGCTGTCTTATATTTCAGGATGACGTTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATGGTAGGTGCCATTTTCAGAGTTATTACGTTTTTTCTTTAGTTTTACAAACCACAGACTGATCAGGTAGATGTTTGTGTACATATCTATATACACTGGTTGTTTTCGTGTCATTGACAAGCTAAAAGTAAGTCGTTATACTTTATCTGAGGTAGTCTGGCCGTCTGGTTAGTTCTTAAAATGTTGAAATATGGTTTGGAAATGAACAATATTCAGTTAACTAGTTGTCTCCTAGTTCAGCAATATATTTCATTGGAAAAGTTGGACCATAATCCTAATAAATGAACAATGAGAATGACATTCAAGCACACTTTTTCAAGTCAATGATCCTTTTTTTTTTTAATTATGAAGGAATTATCCATTGTTAATGGCCATATG</genome_strand>
        <mrna_strand>TGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAACGTACCAATCCCACGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCG........................................................................................................................................GGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCTAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATATCTCCGTGCTATTGCTGCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAGAAGAAATCTGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTTTGAGTCTGCTGCAGATATG.......................................................................................GACGATGTCGCAGGATGTTTTGAGTACTATGCAGACCTCGCTGAAGCTTTGGATTCGAGAAGGAAGACTCCTGTCAATCTTAATTCGGATTCATTTAAAACTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG............................................................................................................................................................................................................................................................................................................................................................GAATTATCCATTGTTAATGGCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437266" ref_strand="+" ref_description="SGN-E437266 [cSTA-3-A8]">
      <seq>ggtaacgtatattagttttctctacgtaagagtcttaaactgtgaggtgattgtatcgagttatggcaaatcgtaatgtaccaatctcacgtcgacagctgtacatcggcggagaatggagagaaccggtcaagaagaaccggattccgataatcaatccggctactgaagaaatcatcggggatattccggcggctaccgcggaagatgtggatatagctgtggaagcagcacggaaagcgattgctagggatgactggggttctacaacaggggcacaacgcgcaaaatatctccgtgctattgctgctaaggtactggagaagaaatccgtacttgcaacacttgaatcccttgatagtggaaaaacattgtttgagtctgctgcagatatggatgatgtcgcaggatgttttgagtactatgcagacctcgctgaagctttggattcgagaaggaagactcctgtcaatcttaattcggattcatttaaaacttatgttcttagagaacctcttggtgttgtgggattgataactccatggaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53214" stop="55398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53520" g_stop="53659" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="180" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53660" i_stop="53795" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53796" g_stop="53929" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="314" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53930" i_stop="54778" i_length="849">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54779" g_stop="54859" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="395" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54860" i_stop="54946" i_length="87">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54947" g_stop="55095" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="544" r_length="149" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E437266" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53520" e_stop="53659"/>
          <exon e_start="53796" e_stop="53929"/>
          <exon e_start="54779" e_stop="54859"/>
          <exon e_start="54947" e_stop="55095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCGGTGCGTCAGATTAACATACTCTATTATATCAGTATTTGTAATCTGATTCTACTTTTCACTTTTTCTTTTTCTGTTGAATGTTGGTGAAGCACGTGAAAAACTCCGATGAGAGATTATGTTTAAATTGGATTTTCAGGGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCGAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATACCTCCGTGCTATTGCTGCTAAGGTTGTATAGTGTTCTGCATTGGCATCTTAATTTTACATATTCATATTTTTTTTTCAGGAATTTTATTAGAACCCTGGATAAAGGCAGTTACTAGTCCAGAAACAGAAAAGTTATCTATATTTCAATGCTGATTTCGTAATTATGTATGAGTTCGGAACAGTGTCAGCTCAAATTATACAGGATTTAGCGCTGTATTCTCTGAGTTACATCGAGATGGCGGTTCCTTCTGTTTTTGAAGGATTGAACTCAGGTATAGTGTAACTTTTAGGCGTAAAAGCTAGTTGGTTGACTCTAAGTACGGCTAGTGTGTCGACAGATAGTTAAATATTTCTCCATTGAAGGGTAGCTAGCTCTGAGAATATCAGGTCTACTACCTTGTACATAAAACTAAGACAAGTGAGTATTTTTTTATAGACACACTATTGAGTATTGGAGTGAAACAAATCACCAACTGGAGCGAAATGAATGTAGATGATTCGGTTTGAGATTAAAGCATAGTAATAGGTCTAGTGCGTATGTAATTTTACATTAGTGATTCTTCCAAGCTGTGAGCGCCTTTTGGATTGTCCTAAGCACAGATATTTATCTTCTATAGATGCCTGAAAAATAGTGCAGCTGTAGATGTCGCGGAGGATTCATTTTAGGGGCACATACCTTACTAATTTGAGAAAACAGAAAATTTCCACTCAAGTAGATTATGTTCTTGGATACTACTTACTAGTGAGCTGCTGTATATATTGCATTTCACCTGGTGTTGGCAAGATATTGGTACATTCTACAGGACTAATTGACTATTCTGCTTTTCTTTAAATGATTCATTTGCTAATTGTTTTAGATTTTTTTTCATAGGTACTGGAGAAGAAATCCGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTATGAGTCTGCTGCAGATATGGTACTTTCTTGCATAAATGAGATAAATATATTGTTCGCTTCAACTTGATGTACACAAATTTATTTTTTGTGCTGTCTTATATTTCAGGATGACGTTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG</genome_strand>
        <mrna_strand>TGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCTCACGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCG........................................................................................................................................GGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCTAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATATCTCCGTGCTATTGCTGCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAGAAGAAATCCGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTTTGAGTCTGCTGCAGATATG.......................................................................................GATGATGTCGCAGGATGTTTTGAGTACTATGCAGACCTCGCTGAAGCTTTGGATTCGAGAAGGAAGACTCCTGTCAATCTTAATTCGGATTCATTTAAAACTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469553" ref_strand="+" ref_description="SGN-E469553 [cSTB-12-O19]">
      <seq>gaaaaacattgtttgtgtctgctgcatatatggacgatgtcgcacgatgttgggagtactatgcagacctcgctgaagctttggattcgagaaggaagactcctggcaatcttaattcggattcatttaaaacttatgttcttagagaacctcttggggttgtgggattgataactccatggaattatccattgttaatggccatatggaaagttgcccctgctctggctgctggttgtgcagcaatacttaagccgtctgaactagcatcaattacctgtttggagttgggtgagatctggagagagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54621" stop="55966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54828" g_stop="54859" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54860" i_stop="54946" i_length="87">
            <donor d_prob="0.946" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54947" g_stop="55095" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="181" r_length="149" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55444" g_stop="55536" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="274" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55537" i_stop="55628" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55629" g_stop="55666" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="312" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E469553" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54828" e_stop="54859"/>
          <exon e_start="54947" e_stop="55095"/>
          <exon e_start="55444" e_stop="55536"/>
          <exon e_start="55629" e_stop="55666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACATTGTATGAGTCTGCTGCAGATATGGTACTTTCTTGCATAAATGAGATAAATATATTGTTCGCTTCAACTTGATGTACACAAATTTATTTTTTGTGCTGTCTTATATTTCAGGATGACGTTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATGGTAGGTGCCATTTTCAGAGTTATTACGTTTTTTCTTTAGTTTTACAAACCACAGACTGATCAGGTAGATGTTTGTGTACATATCTATATACACTGGTTGTTTTCGTGTCATTGACAAGCTAAAAGTAAGTCGTTATACTTTATCTGAGGTAGTCTGGCCGTCTGGTTAGTTCTTAAAATGTTGAAATATGGTTTGGAAATGAACAATATTCAGTTAACTAGTTGTCTCCTAGTTCAGCAATATATTTCATTGGAAAAGTTGGACCATAATCCTAATAAATGAACAATGAGAATGACATTCAAGCACACTTTTTCAAGTCAATGATCCTTTTTTTTTTTAATTATGAAGGAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAATGTGAGTCCTTATATCATATCATCTTCATTATCTATATCCTTGATCCGCATCATTTGCTCCTTTAATTAAATGACTCTGACATTCAATTGTAGTACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTG</genome_strand>
        <mrna_strand>GAAAAACATTGTTTGTGTCTGCTGCATATATG.......................................................................................GACGATGTCGCACGATGTTGGGAGTACTATGCAGACCTCGCTGAAGCTTTGGATTCGAGAAGGAAGACTCCTGGCAATCTTAATTCGGATTCATTTAAAACTTATGTTCTTAGAGAACCTCTTGGGGTTGTGGGATTGATAACTCCATG............................................................................................................................................................................................................................................................................................................................................................GAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCGTCTGAACTAGCATCAAT............................................................................................TACCTGTTTGGAGTTGGGTGAGATCTGGAGAGAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334277" ref_strand="+" ref_description="SGN-E334277 [cTOD-21-M11]">
      <seq>ttgcaggatgttttgagtactatgcaggccttgctgaagctttggattcgagaaggatgactccggttaatcttaattcagattcatataaaagttatgttcttagagaacctcttggtgttgtgggattgataactccatggaattatccattgttaatggccatatggaaagttgcccctgctctggctgctggttgtgcagcaatacttaagccatctgaactagcatcaattacctgtttggagttgggtgagatctgtagagagattggtcttccttctggtgcccttaacattttaacaggattggggcctgaagctggtggtcctttggcatctcatcctcatgtggacaagatttcatttacaggaagtggacctacaggatctaagatcatgactgctgcagctcaacttgttaaaccagttagtcttgagcttggtggaaaaagtccaatcgtggtgtttgacgatatcgataaccttgatatagctgctgagtggactctttttggcatctttgcaaatactggtcaagtttgtagtgcaacatcacggcttatagtacaggaaaacattgcttctgcatttatggacagactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54654" stop="57376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54954" g_stop="55095" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55444" g_stop="55536" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="235" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55537" i_stop="55628" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55629" g_stop="55752" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="359" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55753" i_stop="55847" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55848" g_stop="55913" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="425" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55914" i_stop="56017" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56018" g_stop="56087" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="495" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56088" i_stop="56201" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56202" g_stop="56278" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="572" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56279" i_stop="57042" i_length="764">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57043" g_stop="57076" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="606" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E334277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54954" e_stop="55095"/>
          <exon e_start="55444" e_stop="55536"/>
          <exon e_start="55629" e_stop="55752"/>
          <exon e_start="55848" e_stop="55913"/>
          <exon e_start="56018" e_stop="56087"/>
          <exon e_start="56202" e_stop="56278"/>
          <exon e_start="57043" e_stop="57076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATGGTAGGTGCCATTTTCAGAGTTATTACGTTTTTTCTTTAGTTTTACAAACCACAGACTGATCAGGTAGATGTTTGTGTACATATCTATATACACTGGTTGTTTTCGTGTCATTGACAAGCTAAAAGTAAGTCGTTATACTTTATCTGAGGTAGTCTGGCCGTCTGGTTAGTTCTTAAAATGTTGAAATATGGTTTGGAAATGAACAATATTCAGTTAACTAGTTGTCTCCTAGTTCAGCAATATATTTCATTGGAAAAGTTGGACCATAATCCTAATAAATGAACAATGAGAATGACATTCAAGCACACTTTTTCAAGTCAATGATCCTTTTTTTTTTTAATTATGAAGGAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAATGTGAGTCCTTATATCATATCATCTTCATTATCTATATCCTTGATCCGCATCATTTGCTCCTTTAATTAAATGACTCTGACATTCAATTGTAGTACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAGGTTTGCCTGTTTCTTTTTCGACTTTGCCTTTTGATTATTTATCGAATCTCACATAAAATATGTTCAAAATGATTTTATAAATTTTTTGGTGACAGATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTTGTTAAAGTATGTTTTGACGTAAATAAGTGATCTTTTAGGTTCTAACTGGAAAAAAACTAGCTGGTCTGCGGGTGGATTAATTATGCTAAGCCCTTTTGTTTCATTTGCAGCCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATCGTGGTGTTTGACGATATCGATAACCTTGATATAGGTTTGTTCTTTTTAAATTGTACACTCGACCATTTGGTTAAGAAGTTTGCTTCACCCTTTTGTTTAGGAATTTTATCTTGAAACTTGATCCTATGTTCTTCTTTGTCTAATGCAGCTGCTGAGTGGACTCTTTTTGGCATCTTTGCAAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAGGTAACAAGTGTTAAATGTGGCTGAGGTCCACATATTTAGTCACAGTGTTTTCCTTTGGTTAACTCGGTCCTGGATAGGCACAATTTACAATTATCTAGGAAGTACCTCTCAGAACACCTGTGTGTATGATTGATCATCAAGTCACGTCGTGCTTGGCAGTGTAATAGGAATGTGAAGTTCAACTCTTCAGCACTTTGTGAGAGAGGGTATGCTTGAGAGAAGATCAACAAAATTGCCACTCCTATTCAAATTGTGTGACATTGTCTTAACTCTTATCTGCCTATTTCTTGGAAAAATTTGGGACTCCAGTTCATTTGCTTTGTTTTCTTATGAACAAAACGATTGTTCAGGGTGGGAAAGATAAGTTTATTTCCTAAACGTGAGCTGATGTGAATTGCTAGGGTGCAATTTTTTTAAAAAAATTTGGATATTAATTGATTTATCTAATGAAAAAAACTTTATGAAGTTAGAAATTACACGGAGAGTACTATCAATTACATACTAGAATTCAGTAAATAGTAAAAAGGTGGAACAAATATGAGTATATGAGATAGGATGTGGCCTTCCCAAGAAAAAGATGATCTAGTATATATTTTACCATACTTTAGCATATCAAGGCCAGACGCGAATGCTGATTACATTATTTCTAACTTACAAACACTGTAGCATTTCCTGGTCTTTTTGATGTACTCTTTTGTGGTATTTTCCTTTCTATTATCCATCATGTCGAAACGTTTCTTAAAATCAAATTCTGAACATTCCAGGAAAACATTGCTTCTGCATTTATGGACAGACTGC</genome_strand>
        <mrna_strand>TTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG............................................................................................................................................................................................................................................................................................................................................................GAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAAT............................................................................................TACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAG...............................................................................................ATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTTGTTAAA........................................................................................................CCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATCGTGGTGTTTGACGATATCGATAACCTTGATATAG..................................................................................................................CTGCTGAGTGGACTCTTTTTGGCATCTTTGCAAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACATTGCTTCTGCATTTATGGACAGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470352" ref_strand="+" ref_description="SGN-E470352 [cSTB-17-N4]">
      <seq>gactcctgtcaatcttaattcggattcatttaaaacttatgttcttagagaacctcttggtgttgtgggattgataactccatggaattatccattgttaatggccatatggaaagttgcccctgctctggctgctggttgtgcagcaatacttaagccgtctgaactagcatcaattacctgtttggagttgggtgagatctgtagagagattggtcttccttctggtgcccttaacattttaacaggattggggcctgaagctggtggtcctttggcatctcatcctcatgtggacaagatttcatttacaggaagtggacctacaggatctaagatcatgactgctgcagctcaactagttaaaccagttagtcttgagcttggtggaaaaagtccaatagttgtgtttgacgacatcgataaccttgatatagctgctgagtggactctttttggtatctttgcgaatactggtcaagtttgtagtgcaacatcacggcttatagtacaggaaagcattggttctgcatttttggacaggctgcttaagtggaccaaaaacatcaaaatctccgatcctttggaagaagactgcaagcttggtcctgtcgtcagtgctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54712" stop="57454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55012" g_stop="55095" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55444" g_stop="55536" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="177" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55537" i_stop="55628" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55629" g_stop="55752" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="301" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55753" i_stop="55847" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55848" g_stop="55913" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="367" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55914" i_stop="56017" i_length="104">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56018" g_stop="56087" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="437" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56088" i_stop="56201" i_length="114">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56202" g_stop="56278" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="514" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56279" i_stop="57042" i_length="764">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57043" g_stop="57154" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="626" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E470352" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55012" e_stop="55095"/>
          <exon e_start="55444" e_stop="55536"/>
          <exon e_start="55629" e_stop="55752"/>
          <exon e_start="55848" e_stop="55913"/>
          <exon e_start="56018" e_stop="56087"/>
          <exon e_start="56202" e_stop="56278"/>
          <exon e_start="57043" e_stop="57154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATGGTAGGTGCCATTTTCAGAGTTATTACGTTTTTTCTTTAGTTTTACAAACCACAGACTGATCAGGTAGATGTTTGTGTACATATCTATATACACTGGTTGTTTTCGTGTCATTGACAAGCTAAAAGTAAGTCGTTATACTTTATCTGAGGTAGTCTGGCCGTCTGGTTAGTTCTTAAAATGTTGAAATATGGTTTGGAAATGAACAATATTCAGTTAACTAGTTGTCTCCTAGTTCAGCAATATATTTCATTGGAAAAGTTGGACCATAATCCTAATAAATGAACAATGAGAATGACATTCAAGCACACTTTTTCAAGTCAATGATCCTTTTTTTTTTTAATTATGAAGGAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAATGTGAGTCCTTATATCATATCATCTTCATTATCTATATCCTTGATCCGCATCATTTGCTCCTTTAATTAAATGACTCTGACATTCAATTGTAGTACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAGGTTTGCCTGTTTCTTTTTCGACTTTGCCTTTTGATTATTTATCGAATCTCACATAAAATATGTTCAAAATGATTTTATAAATTTTTTGGTGACAGATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTTGTTAAAGTATGTTTTGACGTAAATAAGTGATCTTTTAGGTTCTAACTGGAAAAAAACTAGCTGGTCTGCGGGTGGATTAATTATGCTAAGCCCTTTTGTTTCATTTGCAGCCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATCGTGGTGTTTGACGATATCGATAACCTTGATATAGGTTTGTTCTTTTTAAATTGTACACTCGACCATTTGGTTAAGAAGTTTGCTTCACCCTTTTGTTTAGGAATTTTATCTTGAAACTTGATCCTATGTTCTTCTTTGTCTAATGCAGCTGCTGAGTGGACTCTTTTTGGCATCTTTGCAAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAGGTAACAAGTGTTAAATGTGGCTGAGGTCCACATATTTAGTCACAGTGTTTTCCTTTGGTTAACTCGGTCCTGGATAGGCACAATTTACAATTATCTAGGAAGTACCTCTCAGAACACCTGTGTGTATGATTGATCATCAAGTCACGTCGTGCTTGGCAGTGTAATAGGAATGTGAAGTTCAACTCTTCAGCACTTTGTGAGAGAGGGTATGCTTGAGAGAAGATCAACAAAATTGCCACTCCTATTCAAATTGTGTGACATTGTCTTAACTCTTATCTGCCTATTTCTTGGAAAAATTTGGGACTCCAGTTCATTTGCTTTGTTTTCTTATGAACAAAACGATTGTTCAGGGTGGGAAAGATAAGTTTATTTCCTAAACGTGAGCTGATGTGAATTGCTAGGGTGCAATTTTTTTAAAAAAATTTGGATATTAATTGATTTATCTAATGAAAAAAACTTTATGAAGTTAGAAATTACACGGAGAGTACTATCAATTACATACTAGAATTCAGTAAATAGTAAAAAGGTGGAACAAATATGAGTATATGAGATAGGATGTGGCCTTCCCAAGAAAAAGATGATCTAGTATATATTTTACCATACTTTAGCATATCAAGGCCAGACGCGAATGCTGATTACATTATTTCTAACTTACAAACACTGTAGCATTTCCTGGTCTTTTTGATGTACTCTTTTGTGGTATTTTCCTTTCTATTATCCATCATGTCGAAACGTTTCTTAAAATCAAATTCTGAACATTCCAGGAAAACATTGCTTCTGCATTTATGGACAGACTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCTGTCGTCAGTGCTGGAC</genome_strand>
        <mrna_strand>GACTCCTGTCAATCTTAATTCGGATTCATTTAAAACTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG............................................................................................................................................................................................................................................................................................................................................................GAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCGTCTGAACTAGCATCAAT............................................................................................TACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAG...............................................................................................ATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTAGTTAAA........................................................................................................CCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATAGTTGTGTTTGACGACATCGATAACCTTGATATAG..................................................................................................................CTGCTGAGTGGACTCTTTTTGGTATCTTTGCGAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTGGTTCTGCATTTTTGGACAGGCTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCTGTCGTCAGTGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412287" ref_strand="+" ref_description="SGN-E412287 [STM-16-E7]">
      <seq>gactcctgtcaatcttaattcggattcatttaaaacttatgttcttagagaacctcttggtgttgtgggattgataactccatggaattatccattgttaatggccatatggaaagttgcccctgctctggctgctggttgtgcagcaatacttaagccgtctgaactagcatcaattacctgtttggagttgggtgagatctgtagagagattggtcttccttctggtgcccttaacattttaacaggattggggcctgaagctggtggtcctttggcatctcatcctcatgtggacaagatttcatttacaggaagtggacctacaggatctaagatcatgactgctgcagctcaactagttaaaccagttagtcttgagcttggtggaaaaagtccaatagttgtgtttgacgacatcgataaccttgatatagctgctgagtggactctttttggtatctttgcgaatactggtcaagtttgtagtgcaacatcacggcttatagtacaggaaagcattggttctgcatttttggacaggctgcttaagtggaccaaaaacatcaaaatctccgatcctttggaagaagactgcaagcttggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54712" stop="57438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55012" g_stop="55095" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55444" g_stop="55536" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="177" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55537" i_stop="55628" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55629" g_stop="55752" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="301" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55753" i_stop="55847" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55848" g_stop="55913" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="367" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55914" i_stop="56017" i_length="104">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56018" g_stop="56087" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="437" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56088" i_stop="56201" i_length="114">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56202" g_stop="56278" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="514" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56279" i_stop="57042" i_length="764">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57043" g_stop="57138" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="610" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E412287" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55012" e_stop="55095"/>
          <exon e_start="55444" e_stop="55536"/>
          <exon e_start="55629" e_stop="55752"/>
          <exon e_start="55848" e_stop="55913"/>
          <exon e_start="56018" e_stop="56087"/>
          <exon e_start="56202" e_stop="56278"/>
          <exon e_start="57043" e_stop="57138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATGGTAGGTGCCATTTTCAGAGTTATTACGTTTTTTCTTTAGTTTTACAAACCACAGACTGATCAGGTAGATGTTTGTGTACATATCTATATACACTGGTTGTTTTCGTGTCATTGACAAGCTAAAAGTAAGTCGTTATACTTTATCTGAGGTAGTCTGGCCGTCTGGTTAGTTCTTAAAATGTTGAAATATGGTTTGGAAATGAACAATATTCAGTTAACTAGTTGTCTCCTAGTTCAGCAATATATTTCATTGGAAAAGTTGGACCATAATCCTAATAAATGAACAATGAGAATGACATTCAAGCACACTTTTTCAAGTCAATGATCCTTTTTTTTTTTAATTATGAAGGAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAATGTGAGTCCTTATATCATATCATCTTCATTATCTATATCCTTGATCCGCATCATTTGCTCCTTTAATTAAATGACTCTGACATTCAATTGTAGTACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAGGTTTGCCTGTTTCTTTTTCGACTTTGCCTTTTGATTATTTATCGAATCTCACATAAAATATGTTCAAAATGATTTTATAAATTTTTTGGTGACAGATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTTGTTAAAGTATGTTTTGACGTAAATAAGTGATCTTTTAGGTTCTAACTGGAAAAAAACTAGCTGGTCTGCGGGTGGATTAATTATGCTAAGCCCTTTTGTTTCATTTGCAGCCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATCGTGGTGTTTGACGATATCGATAACCTTGATATAGGTTTGTTCTTTTTAAATTGTACACTCGACCATTTGGTTAAGAAGTTTGCTTCACCCTTTTGTTTAGGAATTTTATCTTGAAACTTGATCCTATGTTCTTCTTTGTCTAATGCAGCTGCTGAGTGGACTCTTTTTGGCATCTTTGCAAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAGGTAACAAGTGTTAAATGTGGCTGAGGTCCACATATTTAGTCACAGTGTTTTCCTTTGGTTAACTCGGTCCTGGATAGGCACAATTTACAATTATCTAGGAAGTACCTCTCAGAACACCTGTGTGTATGATTGATCATCAAGTCACGTCGTGCTTGGCAGTGTAATAGGAATGTGAAGTTCAACTCTTCAGCACTTTGTGAGAGAGGGTATGCTTGAGAGAAGATCAACAAAATTGCCACTCCTATTCAAATTGTGTGACATTGTCTTAACTCTTATCTGCCTATTTCTTGGAAAAATTTGGGACTCCAGTTCATTTGCTTTGTTTTCTTATGAACAAAACGATTGTTCAGGGTGGGAAAGATAAGTTTATTTCCTAAACGTGAGCTGATGTGAATTGCTAGGGTGCAATTTTTTTAAAAAAATTTGGATATTAATTGATTTATCTAATGAAAAAAACTTTATGAAGTTAGAAATTACACGGAGAGTACTATCAATTACATACTAGAATTCAGTAAATAGTAAAAAGGTGGAACAAATATGAGTATATGAGATAGGATGTGGCCTTCCCAAGAAAAAGATGATCTAGTATATATTTTACCATACTTTAGCATATCAAGGCCAGACGCGAATGCTGATTACATTATTTCTAACTTACAAACACTGTAGCATTTCCTGGTCTTTTTGATGTACTCTTTTGTGGTATTTTCCTTTCTATTATCCATCATGTCGAAACGTTTCTTAAAATCAAATTCTGAACATTCCAGGAAAACATTGCTTCTGCATTTATGGACAGACTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCT</genome_strand>
        <mrna_strand>GACTCCTGTCAATCTTAATTCGGATTCATTTAAAACTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG............................................................................................................................................................................................................................................................................................................................................................GAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCGTCTGAACTAGCATCAAT............................................................................................TACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAG...............................................................................................ATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTAGTTAAA........................................................................................................CCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATAGTTGTGTTTGACGACATCGATAACCTTGATATAG..................................................................................................................CTGCTGAGTGGACTCTTTTTGGTATCTTTGCGAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTGGTTCTGCATTTTTGGACAGGCTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609227" ref_strand="+" ref_description="SGN-E609227 [25230]">
      <seq>cttgagcttggtggaaaaagtccaataggttgtgtttgacgacatcgataaccttgatatagctgctgagtggactctttttggtatctttgcgaatactggtcaagtttgtagtgcaacatcacggcttatagtacaggaaagcattggttctgcatttttggacaggctgcttaagtggaccaaaaacatcaaaatctccgatcctttggaagaagactgcaagcttggtcctgtcgtcagtgctggacaatatgagaaggtattgaagtttatctcaaatgccaaaagtgaaggtgcaaccattctttatggtggcgaacggcctcagcatttgaagaaaggatattatgttcagccaactattattactgatgttaatacctcaatggaaatctggaaagaggaagtattcggacctgttctttgtgtcaaaacattcaaaactgaagaggaagccattgaactagcaacgtgacaccaagtatggtttggctgctgctgttatgtccaaagatgtccaaaaggtgtgagaggtttacaaaggccatttcacgacagggatcatctggattaactgttcacagccaacctttaatcagcttccatggggtggtaaaaacgcgtagtggtttggacgtgatctacgggaatggcgtcttgacagttcttgaacattaaggcaggtgacagagtatacttcttactgaaccatgggctttttacaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55727" stop="58574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56027" g_stop="56087" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56088" i_stop="56201" i_length="114">
            <donor d_prob="0.960" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56202" g_stop="56278" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="139" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56279" i_stop="57042" i_length="764">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57043" g_stop="57156" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="253" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57157" i_stop="57368" i_length="212">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57369" g_stop="57446" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="331" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57447" i_stop="57543" i_length="97">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57544" g_stop="57695" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="484" r_length="153" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57696" i_stop="57822" i_length="127">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57823" g_stop="57883" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="546" r_length="62" r_score="0.885"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57884" i_stop="57984" i_length="101">
            <donor d_prob="0.795" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57985" g_stop="58091" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="655" r_length="109" r_score="0.888"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58092" i_stop="58225" i_length="134">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58226" g_stop="58301" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="732" r_length="77" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E609227" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56027" e_stop="56087"/>
          <exon e_start="56202" e_stop="56278"/>
          <exon e_start="57043" e_stop="57156"/>
          <exon e_start="57369" e_stop="57446"/>
          <exon e_start="57544" e_stop="57695"/>
          <exon e_start="57823" e_stop="57883"/>
          <exon e_start="57985" e_stop="58091"/>
          <exon e_start="58226" e_stop="58301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCTTGGTGGAAAAAGTCCAAT-CGTGGTGTTTGACGATATCGATAACCTTGATATAGGTTTGTTCTTTTTAAATTGTACACTCGACCATTTGGTTAAGAAGTTTGCTTCACCCTTTTGTTTAGGAATTTTATCTTGAAACTTGATCCTATGTTCTTCTTTGTCTAATGCAGCTGCTGAGTGGACTCTTTTTGGCATCTTTGCAAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAGGTAACAAGTGTTAAATGTGGCTGAGGTCCACATATTTAGTCACAGTGTTTTCCTTTGGTTAACTCGGTCCTGGATAGGCACAATTTACAATTATCTAGGAAGTACCTCTCAGAACACCTGTGTGTATGATTGATCATCAAGTCACGTCGTGCTTGGCAGTGTAATAGGAATGTGAAGTTCAACTCTTCAGCACTTTGTGAGAGAGGGTATGCTTGAGAGAAGATCAACAAAATTGCCACTCCTATTCAAATTGTGTGACATTGTCTTAACTCTTATCTGCCTATTTCTTGGAAAAATTTGGGACTCCAGTTCATTTGCTTTGTTTTCTTATGAACAAAACGATTGTTCAGGGTGGGAAAGATAAGTTTATTTCCTAAACGTGAGCTGATGTGAATTGCTAGGGTGCAATTTTTTTAAAAAAATTTGGATATTAATTGATTTATCTAATGAAAAAAACTTTATGAAGTTAGAAATTACACGGAGAGTACTATCAATTACATACTAGAATTCAGTAAATAGTAAAAAGGTGGAACAAATATGAGTATATGAGATAGGATGTGGCCTTCCCAAGAAAAAGATGATCTAGTATATATTTTACCATACTTTAGCATATCAAGGCCAGACGCGAATGCTGATTACATTATTTCTAACTTACAAACACTGTAGCATTTCCTGGTCTTTTTGATGTACTCTTTTGTGGTATTTTCCTTTCTATTATCCATCATGTCGAAACGTTTCTTAAAATCAAATTCTGAACATTCCAGGAAAACATTGCTTCTGCATTTATGGACAGACTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCTGTCGTCAGTGCTGGACAAGTAAGAAATTGCATGCTTTTGGGTAAAATAGAATATGTGGTTCTAACAATAAATTGCCTCAGAAACAAAAAGTAGATAATTAACAGTGAGTTGACACAGCAACTCATTAGAAGACACTATTTTTGGTTTATTATTTTCTAGCAGATCTTGTAGATGGAGTGGTCACACAATGTGTAGACAATCTCTATGTACTAATTTTTGTTAACCTGCAGTATGAGAAGGTATTGAAGTTCATCTCAAATGCCAAAAGTGAAGGTGCAACCATTCTGTGTGGTGGCGAACGGCCTCAGGTAAAAAAGATCCTTATCTAGCAAAAGGCTGCAGATGCTTTATTTTGTTTGTCAATCTTTTGTAAAACAACTTTAAGTCATCATAATTGAATTGCAGCACTTGAAGAAAGGATATTATGTTCAGCCAACAATTATTACTGATGTTAATACCTCAATGGAAATCTGGAAAGAGGAAGTATTCGGACCCGTTCTTTGTGTCAAAACATTCAAAACTGAAGAGCAAGCCATTGAACTAGCAA-ACGACACCAAGTGAGAGTTGCCTATTCAGACTGATGTTAACCATGTCTTTTTGTCCTTCCATTTTTACCTTTTTAGTTAATTTGAACTAAGTTTTAGTCATTTAGTATGTTGTTAATCCCCCCACTTCCTTTCATAGGTATGGCTTGGGTGCTGCTGTTATGTCAAAAGACGT-TAAAAGGTGTGAGAGGTTTACAAAGGTGGGAACCTAGTATTTCACATTTGCTACAAGCGATTCCTTCATAAATCAATATCAGAAGGCGATTGACCTGTTGTCAATTAACTGGAATTTAATTTGCAGG-CATTTCA-GACAGGTATCATCTGGATTAACTGTTCACAGCCAACCTTTAATGAGCTACCATGGGGTGGTAAAAA-GCGTAGTGGTTTTGGACGTGATCTAGGGAAATGGTAAGCACTCATTAATCTGAACTCACGTTGTATTTAAGTGAAAAACGCACTATATCAAAAAATTCAATGCACAAACTTGAGACCTCTGATATGATCGGAATGATAAGTGATAATCATTGTGTTCATTGATGCAGGGGTCTTGAAAATTTCTTGAACATTAA-GCAGGTGACAGAGTATACTTC-TGCTGAACCATTGGCTTTTTATAAGTCA</genome_strand>
        <mrna_strand>CTTGAGCTTGGTGGAAAAAGTCCAATAGGTTGTGTTTGACGACATCGATAACCTTGATATAG..................................................................................................................CTGCTGAGTGGACTCTTTTTGGTATCTTTGCGAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTGGTTCTGCATTTTTGGACAGGCTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCTGTCGTCAGTGCTGGACAA....................................................................................................................................................................................................................TATGAGAAGGTATTGAAGTTTATCTCAAATGCCAAAAGTGAAGGTGCAACCATTCTTTATGGTGGCGAACGGCCTCAG.................................................................................................CATTTGAAGAAAGGATATTATGTTCAGCCAACTATTATTACTGATGTTAATACCTCAATGGAAATCTGGAAAGAGGAAGTATTCGGACCTGTTCTTTGTGTCAAAACATTCAAAACTGAAGAGGAAGCCATTGAACTAGCAACGTGACACCAA...............................................................................................................................GTATGGTTTGGCTGCTGCTGTTATGTCCAAAGATGTCCAAAAGGTGTGAGAGGTTTACAAAG.....................................................................................................GCCATTTCACGACAGGGATCATCTGGATTAACTGTTCACAGCCAACCTTTAATCAGCTTCCATGGGGTGGTAAAAACGCGTAGTGG-TTTGGACGTGATCTACGGGAATG......................................................................................................................................GCGTCTTG-ACAGTTCTTGAACATTAAGGCAGGTGACAGAGTATACTTCTTACTGAACCATGGGCTTTTTACAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412288" ref_strand="-" ref_description="SGN-E412288 [STM-16-E7]">
      <seq>gaaaggatattatgttcagccaactattattactgatgttaatacctcaatggaaatctggaaagaggaagtattcggacctgttctttgtgtcaaaacattcaaaactgaagaggaagccattgaactagcaaatgacaccaagtatggtttggctgctgctgttatgtcaaaagatgttaaaaggtgtgagaggtttacaaaggcatttcagacagggatcatctggattaactgttcacagccaacctttaatcagcttccatggggtggtaaaaagcgtagtggttttggacgtgatctaggggaatggggtcttgaaagtttcttgaacattaagcaggtgacagagtatacttctactgaaccatgggctttttacaagtcaccttcaaggaactagtgaaagggagtttgtccataaagcaattttaataatgtgcaaaactaaactctagtctattagaattgtttgttttgctcgttaatcaataaacagttttaataaaccttaatcgaatagagacaatatcaaggtagcttttctattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57252" stop="58767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57552" g_stop="57695" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57696" i_stop="57822" i_length="127">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57823" g_stop="57883" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="205" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57884" i_stop="57984" i_length="101">
            <donor d_prob="0.795" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57985" g_stop="58091" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="312" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58092" i_stop="58225" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58226" g_stop="58467" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="553" r_length="241" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58468" i_stop="58593" i_length="126">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.591" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58594" g_stop="58607" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="567" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E412288" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412288" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57552" e_stop="57695"/>
          <exon e_start="57823" e_stop="57883"/>
          <exon e_start="57985" e_stop="58091"/>
          <exon e_start="58226" e_stop="58467"/>
          <exon e_start="58594" e_stop="58607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATATTATGTTCAGCCAACAATTATTACTGATGTTAATACCTCAATGGAAATCTGGAAAGAGGAAGTATTCGGACCCGTTCTTTGTGTCAAAACATTCAAAACTGAAGAGCAAGCCATTGAACTAGCAAACGACACCAAGTGAGAGTTGCCTATTCAGACTGATGTTAACCATGTCTTTTTGTCCTTCCATTTTTACCTTTTTAGTTAATTTGAACTAAGTTTTAGTCATTTAGTATGTTGTTAATCCCCCCACTTCCTTTCATAGGTATGGCTTGGGTGCTGCTGTTATGTCAAAAGACGTTAAAAGGTGTGAGAGGTTTACAAAGGTGGGAACCTAGTATTTCACATTTGCTACAAGCGATTCCTTCATAAATCAATATCAGAAGGCGATTGACCTGTTGTCAATTAACTGGAATTTAATTTGCAGGCATTTCAGACAGGTATCATCTGGATTAACTGTTCACAGCCAACCTTTAATGAGCTACCATGGGGTGGTAAAAAGCGTAGTGGTTTTGGACGTGATCTAGGGAAATGGTAAGCACTCATTAATCTGAACTCACGTTGTATTTAAGTGAAAAACGCACTATATCAAAAAATTCAATGCACAAACTTGAGACCTCTGATATGATCGGAATGATAAGTGATAATCATTGTGTTCATTGATGCAGGGGTCTTGAAAATTTCTTGAACATTAAGCAGGTGACAGAGTATACTTCTGCTGAACCATTGGCTTTTTATAAGTCACCTTCAAAGAATTAGTAAAAGGGAGTTTGTCCACGAAGCAGTTTTAATAAATGTGCAAAACTAAACTCTAGTCTATTAGAATTGTTTATTTTGCTCGTTAACCAATAAACAGTTTTAATAAACCTTAATCGAATAGAGACAATATCAAAGTAGCTTTTCTTTTCTATTTATATATCGTGTTAGCCCTTCTTTGAATCATGTGTGAATACGAAATATTTTATATATTCTATCTAAAAATTTGAGTTGACTTTTCTAACTTCCCAACCTTTATTTCTAATACATTCTTTTAAAGGAAAAACAAAGAAA</genome_strand>
        <mrna_strand>GAAAGGATATTATGTTCAGCCAACTATTATTACTGATGTTAATACCTCAATGGAAATCTGGAAAGAGGAAGTATTCGGACCTGTTCTTTGTGTCAAAACATTCAAAACTGAAGAGGAAGCCATTGAACTAGCAAATGACACCAA...............................................................................................................................GTATGGTTTGGCTGCTGCTGTTATGTCAAAAGATGTTAAAAGGTGTGAGAGGTTTACAAAG.....................................................................................................GCATTTCAGACAGGGATCATCTGGATTAACTGTTCACAGCCAACCTTTAATCAGCTTCCATGGGGTGGTAAAAAGCGTAGTGGTTTTGGACGTGATCTAGGGGAATG......................................................................................................................................GGGTCTTGAAAGTTTCTTGAACATTAAGCAGGTGACAGAGTATACTTCTACTGAACCATGGGCTTTTTACAAGTCACCTTCAAGGAACTAGTGAAAGGGAGTTTGTCCATAAAGCAATTTTAAT-AATGTGCAAAACTAAACTCTAGTCTATTAGAATTGTTTGTTTTGCTCGTTAATCAATAAACAGTTTTAATAAACCTTAATCGAATAGAGACAATATCAAGGTAGCTTTTCTATTCAA..............................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411572" ref_strand="+" ref_description="SGN-E411572 [STM-14-L22]">
      <seq>gtcaagcaaagctatacaaagactccaaaagtcaatgactcatttcctctacatttcatccaatcaccaaaagcttaaatacccatttcccctttaccttcattccatctctccatcctcaatctttcttcaaagatttttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagaagagctaatcaagaaagcttgtaacttagccatggaagctcacaatttatcacctgagaaaccttatatttacaagaaaataaatgggtctactgatgttgttattgcttttgctggaactttgtcttttgatggttggtacagtaacacttcttttggagagacagagattaacaccactctgtttccatctttgagaagtgttggcactgatgaggtagctaaggtcaatgaagcatttgctagaagatttcaagacatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgtcaaaaggaagacaagtagtgtttgcagggcactcgtccggtggtgctatagctattctggcagctctctggtgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58874" stop="60846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59174" g_stop="59686" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60546" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="607" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E411572" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59174" e_stop="59686"/>
          <exon e_start="60453" e_stop="60546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGCAAAGCAATACAAAGACTTCAAAAGTCAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGG</genome_strand>
        <mrna_strand>GTCAAGCAAAGCTATACAAAGACTCCAAAAGTCAATGACTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAATACCCATTTCCCCTTTACCTTCATTCCATCTCTCCATCCTCAATCTTTCTTCAAAGATTTTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGAAGAGCTAATCAAGAAAGCTTGTAACTTAGCCATGGAAGCTCACAATTTATCACCTGAGAAACCTTATATTTACAAGAAAATAAATGGGTCTACTGATGTTGTTATTGCTTTTGCTGGAACTTTGTCTTTTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGACAGAGATTAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAGGTAGCTAAGGTCAATGAAGCATTTGCTAGAAGATTTCAAGACATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTCAAAAGGAAGACAAGTAGTGTTTGCAGGGCACTCGTCCGGTGGTGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417334" ref_strand="+" ref_description="SGN-E417334 [STM-25-C2]">
      <seq>gcaaaacaaagacttcaaaagtcaatgactcatttcctctacatttcatccaatcaccaaaagcttaaatacccatttcccctttaccttcattccatctctccatcctcaatctttcttcaaagatttttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagaagaagctaatcaagaaagcttgtaacttagccatggaagctcacaatttatcacctgggataccttatatttacaagaaaatagatcggtctactgatgttgtttttgcttttgctgaaactttgtcttttgatggttggtacagtaacacttcttttggagagacagagattaacaccactctgtttccatctttgagaagtgttggcactgatgaggtagctaaggtcaatgaagcatttgctagaagatttcaagacatactggacaaatcttcacttaaaaatgaggtggacaaggcaatgtcaaaaggaagacaagtagtgtttgcagggcactcgtccggtggcgctatagctattctggcagctctctggtgtctggaatggtgccgcacaagaccagaagtgacatgttagtccatctatactgtatgacttttggatcccctcttgttggaacaagatatggtctcatgccctcaggcgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58884" stop="60956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59184" g_stop="59686" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60656" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="706" r_length="202" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E417334" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59184" e_stop="59686"/>
          <exon e_start="60453" e_stop="60656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATACAAAGACTTCAAAAGTCAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATG-AGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAA</genome_strand>
        <mrna_strand>GCAAAACAAAGACTTCAAAAGTCAATGACTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAATACCCATTTCCCCTTTACCTTCATTCCATCTCTCCATCCTCAATCTTTCTTCAAAGATTTTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGAAGAAGCTAATCAAGAAAGCTTGTAACTTAGCCATGGAAGCTCACAATTTATCACCTGGGATACCTTATATTTACAAGAAAATAGATCGGTCTACTGATGTTGTTTTTGCTTTTGCTGAAACTTTGTCTTTTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGACAGAGATTAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAGGTAGCTAAGGTCAATGAAGCATTTGCTAGAAGATTTCAAGACATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACAAGGCAATGTCAAAAGGAAGACAAGTAGTGTTTGCAGGGCACTCGTCCGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGGTGCCGCACAAGACCAGA-AGTGACATGTTAGTCCATCTATACTGTATGACTTTTGGATCCCCTCTTGTTGG-AACAAGATATGGTCTCATGCCCTCAGGCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445961" ref_strand="+" ref_description="SGN-E445961 [cSTA-19-O10]">
      <seq>gcaaaacaaagacgggaaaagtcaatgactcatttcctctacatttcatccaatcaccaaaagcttaaatacccatttcccctttaccttcattccatctctccatcctcaatctttcttcaaagatttttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagaagagctaatcaagaaagcttgtaacttagccatggaagctcacaatttatcacctgggataccttatatttacaagaaaatagatcggtctactgatgttgtttttgcttttgctgaaactttgtcttttgatggttggtacagtaacacttcttttggagagacagagattaacaccactctgtttccatctttgagaagtgttggcactgatgaggtagctaaggtcaatgaagcatttgctagaagatttcaagacatactggacaaatcttcacttaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58900" stop="59983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59184" g_stop="59683" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E445961" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59184" e_stop="59683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATACAAAGACTTCAAAAGTCAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAAT</genome_strand>
        <mrna_strand>GCAAAACAAAGACGGGAAAAGTCAATGACTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAATACCCATTTCCCCTTTACCTTCATTCCATCTCTCCATCCTCAATCTTTCTTCAAAGATTTTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGAAGAGCTAATCAAGAAAGCTTGTAACTTAGCCATGGAAGCTCACAATTTATCACCTGGGATACCTTATATTTACAAGAAAATAGATCGGTCTACTGATGTTGTTTTTGCTTTTGCTGAAACTTTGTCTTTTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGACAGAGATTAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAGGTAGCTAAGGTCAATGAAGCATTTGCTAGAAGATTTCAAGACATACTGGACAAATCTTCACTTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306112" ref_strand="+" ref_description="SGN-E306112 [cLEY-13-B4]">
      <seq>gaagacttcaaaagtcaatggctcatttcctctacatttcatcgcaatcaccaggagcttaagtacccatttcccctttacctaaactccatctctctatcctcaatctttcttcaaggattcttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagatatgagctaatcaagaaaacatgtaacttaaccatggaagctcacaatttatcacctgggaaaccttatatttacaagaaaattaatgggtctactgatgttgtttttgcttttgctggaactttgtcttctgatggttggtacagtaacacttcttttggagagaaagagatcaacaccactctgtttccatctttgagaagtgttggcacctgatgaagtacctaaggtcaatgaagtatttgctacaagatttgaagagatactggacaaatcttcacttaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58892" stop="59984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59191" g_stop="59684" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E306112" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59191" e_stop="59684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTCAAAAGTCAATGGCTCATTTCCTCTACATTTCATC-CAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCA-CTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATG</genome_strand>
        <mrna_strand>GAAGACTTCAAAAGTCAATGGCTCATTTCCTCTACATTTCATCGCAATCACCAGGAGCTTAAGTACCCATTTCCCCTTTACCTAAACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGATATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACCTGATGAAGTACCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446489" ref_strand="+" ref_description="SGN-E446489 [cSTA-21-H19]">
      <seq>caatgactcatttcctctacatttcatccaatcaccaaaagcttaaatacccatttcccctttaccttcattccatctctccatcctcaatctttcttcaaagatttttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagaagagctaatcaagaaagcttgtaacttagccatggaagctcacaatttatcacctgagaaaccttatatttacaagaaaataaatgggtctactgatgttgttattgcttttgctggaactttgtcttttgatggttggtacagtaacacttcttttggagagacagagattaacaccactctgtttccatctttgagaagtgttggcactgatgaggtagctaaggtcaatgaagcatttgctagaagatttcaagacatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgtcaaaaggaagacaagtagtgtttgcagggcactcgtccggtggtgctatagctattctggcagctctctggtgtctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58906" stop="60849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59206" g_stop="59686" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60549" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="578" r_length="97" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E446489" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59206" e_stop="59686"/>
          <exon e_start="60453" e_stop="60549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAAT</genome_strand>
        <mrna_strand>CAATGACTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAATACCCATTTCCCCTTTACCTTCATTCCATCTCTCCATCCTCAATCTTTCTTCAAAGATTTTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGAAGAGCTAATCAAGAAAGCTTGTAACTTAGCCATGGAAGCTCACAATTTATCACCTGAGAAACCTTATATTTACAAGAAAATAAATGGGTCTACTGATGTTGTTATTGCTTTTGCTGGAACTTTGTCTTTTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGACAGAGATTAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAGGTAGCTAAGGTCAATGAAGCATTTGCTAGAAGATTTCAAGACATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTCAAAAGGAAGACAAGTAGTGTTTGCAGGGCACTCGTCCGGTGGTGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443795" ref_strand="+" ref_description="SGN-E443795 [cSTA-40-G13]">
      <seq>caatgactcatttcctctacatttcatccaatcaccaaaagcttaaatacccatttcccctttaccttcattccatctctccatcctcaatctttcttcaaagatttttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagaagagctaatcaagaaagcttgtaacttagccatggaagctcacaatttatcacctgagaaaccttatatttacaagaaaataaatgggtctactgatgttgttattgcttttgctggaactttgtcttttgatggttggtacagtaacacttcttttggagagacagagattaacaccactctgtttccatctttgagaagtgttggcactgatgaggtagctaaggtcaatgaagcatttgctagaagatttcaagacatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgtcaaaaggaagacaagtagtgtttgcagggcactcgtccggtggtgctatagctattctggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58906" stop="60831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59206" g_stop="59686" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60531" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="560" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E443795" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59206" e_stop="59686"/>
          <exon e_start="60453" e_stop="60531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAG</genome_strand>
        <mrna_strand>CAATGACTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAATACCCATTTCCCCTTTACCTTCATTCCATCTCTCCATCCTCAATCTTTCTTCAAAGATTTTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGAAGAGCTAATCAAGAAAGCTTGTAACTTAGCCATGGAAGCTCACAATTTATCACCTGAGAAACCTTATATTTACAAGAAAATAAATGGGTCTACTGATGTTGTTATTGCTTTTGCTGGAACTTTGTCTTTTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGACAGAGATTAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAGGTAGCTAAGGTCAATGAAGCATTTGCTAGAAGATTTCAAGACATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTCAAAAGGAAGACAAGTAGTGTTTGCAGGGCACTCGTCCGGTGGTGCTATAGCTATTCTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447587" ref_strand="+" ref_description="SGN-E447587 [cSTA-27-D15]">
      <seq>caatgactcatttcctctacatttcatccaatcaccaaaagcttaaatacccatttcccctttaccttcattccatctctccatcctcaatctttcttcaaagatttttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagaagagctaatcaagaaagcttgtaacttagccatggaagctcacaatttatcacctgagaaaccttatatttacaagaaaataaatgggtctactgatgttgttattgcttttgctggaactttgtcttttgatggttggtacagtaacacttcttttggagagacagagattaacaccactctgtttccatctttgagaagtgttggcactgatgaggtagctaaggtcaatgaagcatttgctagaagatttcaagacatactggacaaatcttcacttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58906" stop="59982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59206" g_stop="59682" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E447587" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59206" e_stop="59682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAA</genome_strand>
        <mrna_strand>CAATGACTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAATACCCATTTCCCCTTTACCTTCATTCCATCTCTCCATCCTCAATCTTTCTTCAAAGATTTTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGAAGAGCTAATCAAGAAAGCTTGTAACTTAGCCATGGAAGCTCACAATTTATCACCTGAGAAACCTTATATTTACAAGAAAATAAATGGGTCTACTGATGTTGTTATTGCTTTTGCTGGAACTTTGTCTTTTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGACAGAGATTAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAGGTAGCTAAGGTCAATGAAGCATTTGCTAGAAGATTTCAAGACATACTGGACAAATCTTCACTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746132" ref_strand="+" ref_description="SGN-E746132 [GI|47104922]">
      <seq>atctctctatcctcaatctttcttcaaggattcttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagatgagctaatcaagaaaacatgtaacttaaccatggaagctcacaatttatcacctgggaaaccttatatttacaagaaaattaatgggtctactgatgttgtttttgcttttgctggaactttgtcttctgatggttggtacagtaacacttcttttggagagaaagagatcaacaccactctgtttccatctttgagaagtgttggcactgatgaagtagctaaggtcaatgaagtatttgctacaagatttgaagagatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgttagaaggaagacaggtagtgtttgcagggcactcgtcgggtggcgctatagctattctggcagctctctggtgtctggaatgttgccgcacaagaccaaatggtgacatgttactccatccatactgtatgacttttggatcccctcttgttggtaacaagatatggtctcatgccctcaggcgcgaaaactgggctcgttacttcctacattttgtcatgaagtacgacgttgtccccagaatgatgcttgctcctctttcatcaattcaagaattgcttcaagtaatctctcccttcatcaatccaaagtcccagtattatcagcacgaggctgttgcacgatcaagtcatgcatcgaatttctttatgactgtaatgaggagtgcatcctctgttgcaagctatgatgcatgtaatctgaagggatgcacaaacttactgttggaaactgtttccaacattgttcaacttagcccttacagacccttcggaacttacatcttctgcactgggaataggaaactggttgtcgttgagaaccctgatgctgttctgcagttactgttctattcctctcaattgagttccgaagcagaagctgcagtagttgttcctagaagcttaaacgatcacctgttatataaaaacgaaatgcaagatagcttagagatgcaagatgttctccatctcaacaatcttactgatattcctttatcttcaaatgttgatccaagtatgaattcagcactgaatgaccttggcctgagtacaagagcaaggctgtgtcttcgtgcagcaggagagtgggagaagcagaagaagaagaacgaggaaaagattgaacaaaataagagaagcatcagggacgcattaagcaagatacaggagtatcagaccaagtgtgatatccgtaaagttgggtattatgatgcattcaagattcaaaacaccgatgatgacttcaatgctaatgtgagaaggcttgagctagcaggtatatgggatgagatcattgaaatgttgaaaaggtatgagctcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcagataataagaaaaagatagaagtaacagctttacattacttcaatgagattaacccagatatatgtagctcagataattgaagatgtttcaactttcatgagaactgctttacttgtatggcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58980" stop="62586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59280" g_stop="59686" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="61235" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="1190" r_length="783" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61236" i_stop="61326" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61327" g_stop="62285" g_length="959"/>
          <reference_exon_boundary r_type="cDNA" r_start="1191" r_stop="2149" r_length="959" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E746132" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2149</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59280" e_stop="59686"/>
          <exon e_start="60453" e_stop="61235"/>
          <exon e_start="61327" e_stop="62285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTGGTAAGCAATAGATATGGTTAATTTTTCATTTTCAGCAGGATTGTCTATCTTGCTCAAGCTAATAGGCGTTTTCACGTTATCTAAATCTCAGAGTACAAGAGCAAGGCTGTGTCTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGAAGCATCAGGGACGCATTAAGCAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGA</genome_strand>
        <mrna_strand>ATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTG...........................................................................................AGTACAAGAGCAAGGCTGTGTCTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGAAGCATCAGGGACGCATTAAGCAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246024" ref_strand="+" ref_description="SGN-E246024 [cLEF-54-C6]">
      <seq>tttcttcaaggattcttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagatgagctaatcaagaaaacatgtaacttaaccatggaagctcacaatttatcacctgggaaaccttatatttacaagaaaattaatgggtctactgatgttgtttttgcttttgctggaactttgtcttctgatggttggtacagtaacacttcttttggagagaaagagatcaacaccactctgtttccatctttgagaagtgttggcactgatgaagtagctaaggtcaatgaagtatttgctacaagatttgaagagatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgttagaaggaagacaggtagtgtttgcagggcactcgtcgggtggcgctatagctattctggcagctctctggtgtctggaatgttgccgcacaagaccaaatggtgacatgttactccatccatactgtatgacttttggatcccctcttgttggtaacaagatatggtctcatgccctcaggcgcgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58998" stop="60960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59298" g_stop="59686" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60660" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="597" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E246024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59298" e_stop="59686"/>
          <exon e_start="60453" e_stop="60660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACT</genome_strand>
        <mrna_strand>TTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269744" ref_strand="+" ref_description="SGN-E269744 [cLEM-17-P15]">
      <seq>aaggattcttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagatgagctaatcaagaaaacatgtaacttaaccatggaagctcacaatttatcacctgggaaaccttatatttacaagaaaattaatgggtctactgatgttgtttttgcttttgctggaactttgtcttctgatggttggtacagtaacacttcttttggagagaaagagatcaacaccactctgtttccatctttgagaagtgttggcactgatgaagtagctaaggtcaatgaagtatttgctacaagatttgaagagatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgttagaaggaagacaggtagtgtttgcagggcactcgtcgggtggcgctatagctattctggcagctctctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59005" stop="60841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59305" g_stop="59686" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60541" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="471" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E269744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59305" e_stop="59686"/>
          <exon e_start="60453" e_stop="60541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTG</genome_strand>
        <mrna_strand>AAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375765" ref_strand="+" ref_description="SGN-E375765 [TUS-15-A10]">
      <seq>ttcttgaaaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagatgagctaatcaagaaaacatgtaacttaaccatggaagctcacaatttatcacctgggaaaccttatatttacaagaaaattaatgggtctactgatgttgtttttgcttttgctggaactttgtcttctgatggttggtacagtaacacttcttttggagagaaagagatcaacaccactctgtttccatctttgagaagtgttggcactgatgaagtagctaaggtcaatgaagtatttgctacaagatttgaagagatactggacaaatcttcacttaaaaatgaggtggagaaggcaatgttagaaggaagacaggtagtgtttgcagggcactcgtcgggtggcgctatagctattctggcagctctctggtgtctggaatgttgccgcacaagaccaaatggtgacatgttactccatccatactgtatgacttttggatcccctcttgttggtaacaagatatggtctcatgccctcaggcgcgaaaactgggctcgttacttcctacattttgtcatgaagtacgacgttgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59010" stop="61006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59310" g_stop="59686" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60706" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="631" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E375765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59310" e_stop="59686"/>
          <exon e_start="60453" e_stop="60706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAGGTATACATACTGGGGTTCAATTATCTTGTTCTTTCTTAAAACTCGTTGTTTTGACTTGACACGAAAAAATTGTAGTGTTAAATGTTAGAGTAGTATAATCTCATTTCCTGTAGATAATTGTTTTTACCACTTGAGTGTACACCAGTTAAAGAATCAAATTCTGTGTGAGTGTTTAGACAAAGAATTTTTCTTTTTGATTCAATTTTTTTTTCAAAAGCATTGGAAGTTCTATTCCTGATAGTTCAGTTGGATCAACTTGATTCCCTTTAGTGGCTTTTATTTATTCCTTCCGTCCTAATTTTAGTGTCTTAGTTTGACTTAGACACCGAGTTCAAGAAATAAATGGAGACTTTGTTGTTTAGTCCTATTGATCTTCTGGTCTTAAACTCCAAGTAGAATGTTGGGATTGGAAAAATTACAAGATATAAAAAGAGACATTCTTTTTGGGAAAGACCACAAAGGAAAGTAAGTCACTTGAATTCTTAGTTGCGTGGACTCTCCACTTTTGATGCCGCACCCGTCTCGAATTCTCAAAAAAATACACTAGTTTTGGCGAATTCTACACGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCTTAAATTGCAACGAACGGAGTATTAGTTATCATGTCAACAATAAAGTACTGATTCCTATCATAGATCCTATCAGGATAATGCCTCTGTAGAGTGTAGACTAAGTTAATGGAAATTAAGCTTCATACCTTCATCTTCGATTCATGGAGTTGTGTTGGTTTTAGGTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCC</genome_strand>
        <mrna_strand>TTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201772" ref_strand="+" ref_description="SGN-E201772 [cLEC-11-B5]">
      <seq>aaactaaacagtaaagttgcaatctttaagcagctaagaagcaaaaatggtgaaaattggagaaggaattgaagtcagagatgagctaatcaagaaaacatgtaacttaaccatggaagcttacaatttatcacctgggaaaccttatatttacaagaaaattaatgggtctactgatgttgtttttgcttttgctggaactttgtcttctgatggttggtacaagaacacttcttttggagagaaagagatcaacaccactctgtttccatctttgagaagtgttggcactgatgaagtagctaagggcaatgaagtatttgctacaagatttgaagagatactggacaaatcttcacttaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59017" stop="59985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59317" g_stop="59685" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E201772" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59317" e_stop="59685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGA</genome_strand>
        <mrna_strand>AAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTTACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAAGAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGGCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485147" ref_strand="-" ref_description="SGN-E485147 [cSTE-16-B14]">
      <seq>ggcgcaaggcgctaaggagttatcttctctgatacccaagatgtctgtatgtgctcaggagcgagtgttttccaccatctggcataggtagactcagggaagagaacatcatcgccaagaaggatactctgcatccagatattcgcagctgtttctaaactcagaaccctgtcttgcacttgtgcaaatagcttgtttcttagttcctccacttcggcccagaaacaagactcggaacgtgcaccagcttgcacttcatcaaaatgctctaaccatatctgtgtgaaccgataacgcttaggcctagccctgatcaagtaaggtccagtatcttcattcttcaagtgcctgtaatagtttgcaatatccaagggctccacttgcctgtgaaactgtgtccctagttctatccagtctcttggtccatcagagctatctgggagctcataccttttcaacatttcaatgatctcatcccatatacctgctagctctagccttttcacattagctttgaagtcatcttcggtgttttgaatcttgaatgcatcataatacccaactttacggatatcacacttggtctggtactcctgaatgttgactagctcttctctgacttcaattccttctccaattttcaccacatttgcttatcagctgcttaaagattgcaactttactgttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62339" stop="59020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62039" g_stop="61445" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61444" i_stop="61233" i_length="212">
            <donor d_prob="0.373" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61232" g_stop="61227" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="600" r_length="5" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61226" i_stop="59410" i_length="1817">
            <donor d_prob="0.709" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59409" g_stop="59320" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="690" r_length="90" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E485147" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62039" e_stop="61445"/>
          <exon e_start="61232" e_stop="61227"/>
          <exon e_start="59409" e_stop="59320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCAAGGCGCTAAGGAGTTATTTTCCTTGACACCCAAGATGCCTGTTTGTGCTGAGGTGGGAGTGTTTTCCACCACTTGGTATAGGTAGATTCAGGGAAGAAAATATCATCGCCAAGAAGGCTACTCTGGATCCAGCCATTTGCAGCTGTTTCTAAATTCAAAACCCTGTCTTGCACTTGTGCAAATGGCTTGTTTCTTAGTTCCTCAACTTCTGCCCAGAAACAAGACTCGGAACGTGCACCAGCTTGCACTCTATCAAAATGCTCTAACCATCTCTGTGTGAACCGATAACGCTTAGGCCTAGCCCTGATCAAGTAAGGTCCAGTATCTTCATTCTTCAAGTGCCTGTAATAGTTTGCAATATCCAAGGGCTCAACTTGCCTGCGAAACTGTGTCCCTAGTTCTATCCAGTCTCTTCGTCCCTCGAAGCTATCTGGGAGCTCATACCTTTTCAACATTTCAATGATCTCATCCCATATACCTGCTAGCTCAAGCCTTCTCACATTAGCATTGAAGTCATCATCGGTGTTTTGAATCTTGAATGCATCATAATACCCAACTTTACGGATATCACACTTGGTCTGATACTCCTGTATCTTGCTTAATGCGTCCCTGATGCTTCTCTTATTTTGTTCAATCTTTTCCTCGTTCTTCTTCTTCTGCTTCTCCCACTCTCCTGCTGCACGAAGACACAGCCTTGCTCTTGTACTCTGAGATTTAGATAACGTGAAAACGCCTATTAGCTTGAGCAAGATAGACAATCCTGCTGAAAATGAAAAATTAACCATATCTATTGCTTACCAGGCCAAGGTCATTCAGTGCTGAATTCATACTTGGATCAACATTTGAAGATAAAGGAATATCAGTAAGATTGTTGAGATGGAGAACATCTTGCATCTCTAAGCTATCTTGCATTTCGTTTTTATATAACAGGTGATCGTTTAAGCTTCTAGGAACAACTACTGCAGCTTCTGCTTCGGAACTCAATTGAGAGGAATAGAACAGTAACTGCAGAACAGCATCAGGGTTCTCAACGACAACCAGTTTCCTATTCCCAGTGCAGAAGATGTAAGTTCCGAAGGGTCTGTAAGGGCTAAGTTGAACAATGTTGGAAACAGTTTCCAACAGTAAGTTTGTGCATCCCTTCAGATTACATGCATCATAGCTTGCAACAGAGGATGCACTCCTCATTACAGTCATAAAGAAATTCGATGCATGACTTGATCGTGCAACAGCCTCGTGCTGATAATACTGGGACTTTGGATTGATGAAGGGAGAGATTACTTGAAGCAATTCTTGAATTGATGAAAGAGGAGCAAGCATCATTCTGGGGACAACGTCGTACTTCATGACAAAATGTAGGAAGTAACGAGCCCAGTTTTCGCGCCTGAGGGCATGAGACCATATCTTGTTACCAACAAGAGGGGATCCAAAAGTCATACAGTATGGATGGAGTAACATGTCACCATTTGGTCTTGTGCGGCAACATTCCAGACACCAGAGAGCTGCCAGAATAGCTATAGCGCCACCCGACGAGTGCCCTGCAAACACTACCTGTCTTCCTTCTAACATTGCCTTCTCCACCTAAAACCAACACAACTCCATGAATCGAAGATGAAGGTATGAAGCTTAATTTCCATTAACTTAGTCTACACTCTACAGAGGCATTATCCTGATAGGATCTATGATAGGAATCAGTACTTTATTGTTGACATGATAACTAATACTCCGTTCGTTGCAATTTAAGCTATGTTGCTCGGACTCTTCAAAAATGTCAACGGGTGCGTGTAGAATTCGCCAAAACTAGTGTATTTTTTTGAGAATTCGAGACGGGTGCGGCATCAAAAGTGGAGAGTCCACGCAACTAAGAATTCAAGTGACTTACTTTCCTTTGTGGTCTTTCCCAAAAAGAATGTCTCTTTTTATATCTTGTAATTTTTCCAATCCCAACATTCTACTTGGAGTTTAAGACCAGAAGATCAATAGGACTAAACAACAAAGTCTCCATTTATTTCTTGAACTCGGTGTCTAAGTCAAACTAAGACACTAAAATTAGGACGGAAGGAATAAATAAAAGCCACTAAAGGGAATCAAGTTGATCCAACTGAACTATCAGGAATAGAACTTCCAATGCTTTTGAAAAAAAAATTGAATCAAAAAGAAAAATTCTTTGTCTAAACACTCACACAGAATTTGATTCTTTAACTGGTGTACACTCAAGTGGTAAAAACAATTATCTACAGGAAATGAGATTATACTACTCTAACATTTAACACTACAATTTTTTCGTGTCAAGTCAAAACAACGAGTTTTAAGAAAGAACAAGATAATTGAACCCCAGTATGTATACCTCATTTTTAAGTGAAGATTTGTCCAGTATCTCTTCAAATCTTGTAGCAAATACTTCATTGACCTTAGCTACTTCATCAGTGCCAACACTTCTCAAAGATGGAAACAGAGTGGTGTTGATCTCTTTCTCTCCAAAAGAAGTGTTACTGTACCAACCATCAGAAGACAAAGTTCCAGCAAAAGCAAAAACAACATCAGTAGACCCATTAATTTTCTTGTAAATATAAGGTTTCCCAGGTGATAAATTGTGAGCTTCCATGGTTAAGTTACATGTTTTCTTGATTAGCTCATCTCTGACTTCAATTCCTTCTCCAATTTTCACCATTTTTGCTTCTTAGCTGCTTAAAGATTGCAACTTTACTGTTTAG</genome_strand>
        <mrna_strand>GGCGCAAGGCGCTAAGGAGTTATCTTCTCTGATACCCAAGATGTCTGTATGTGCTCAGGAGCGAGTGTTTTCCACCATCTGGCATAGGTAGACTCAGGGAAGAGAACATCATCGCCAAGAAGGATACTCTGCATCCAGATATTCGCAGCTGTTTCTAAACTCAGAACCCTGTCTTGCACTTGTGCAAATAGCTTGTTTCTTAGTTCCTCCACTTCGGCCCAGAAACAAGACTCGGAACGTGCACCAGCTTGCACTTCATCAAAATGCTCTAACCATATCTGTGTGAACCGATAACGCTTAGGCCTAGCCCTGATCAAGTAAGGTCCAGTATCTTCATTCTTCAAGTGCCTGTAATAGTTTGCAATATCCAAGGGCTCCACTTGCCTGTGAAACTGTGTCCCTAGTTCTATCCAGTCTCTTGGTCCATCAGAGCTATCTGGGAGCTCATACCTTTTCAACATTTCAATGATCTCATCCCATATACCTGCTAGCTCTAGCCTTTTCACATTAGCTTTGAAGTCATCTTCGGTGTTTTGAATCTTGAATGCATCATAATACCCAACTTTACGGATATCACACTTGGTCTGGTACTCCT....................................................................................................................................................................................................................G-AATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAGCTCTTCTCTGACTTCAATTCCTTCTCCAATTTTCACCACATTTGCTTATCAGCTGCTTAAAGATTGCAACTTTACTGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314363" ref_strand="+" ref_description="SGN-E314363 [cTOA-21-C9]">
      <seq>ggcgctatagctattctggcagctctctggtgtctggaatgttgccgcacaagaccaaatggtgacatgttactccatccatactgtatgacttttggatcccctcttgttggtaacaagatatggtctcatgccctcaggcgcgaaaactgggctcgttacttcctacattttgtcatgaagtacgacgttgtccccagaatgatgcttgctcctctttcatcaattcaagaattgcttcaagtaatctctcccttcatcaatccaaagtcccagtattatcagcacgaggctgttgcacgatcaagtcatgcatcgaatttctttatgactgtaatgaggagtgcatcctctgttgcaagctatgatgcatgtaatctgaagggatgcacaaacttactgttggaaactgtttccaacattgttcaacttagcccttacagacccttcggaacttacatcttctgcactgggaataggaaactggttgtcgttgagaaccctgatgctgttctgcagttactgttctattcctctcaattgagttccgaagcagaagctgcagtagttgttcctagaagcttaaacgatcacctgttatataaaaacgaaatgcaagatagcttagagatgcaagatgttctccatctcaacaatcttactgatattcctttatcttcaaatgttgatccaagtatgaattcagcactgaatgaccttggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60210" stop="61535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60510" g_stop="61235" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E314363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60510" e_stop="61235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTG</genome_strand>
        <mrna_strand>GGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403876" ref_strand="+" ref_description="SGN-E403876 [PPC-12-C9]">
      <seq>tgacttttggatcccctcttgttggcaacaagatattgtctcatgccctcaggcgcgaaaactgggctcgttacttcatacattttgtcatgaagtacgacattgtccccaggatgatgcttgctcctctttcatcaattcaagaattgcttcaagcaatctctcccttcatcaatccgaagtcccagtattctcagcgcgatgctgttgcacgatcaagtaatgcattgaatttctttatgactgtaatgaggaatgcatcctctgttgcaagctatgctgcatgtaatctgaagggatgcacaaacttgctgttggaaactgtttccaacattgttcaactcagcccttatagaccctttggaacttacatcttctgcactgggaataggaaactggttgtcgttgagaaccctgatgctgttctgcagttactgttctattcctctcaactgagttccgaagcagaagctgcagtagtcggtgctagaagcttaaatgatcatctgttatataaaaacgaaattcaagatagcttagagatgcaagatgttgttcatctcaacaatctcactgatattcctttatcttcaaatgttgatctaagtggtgaaaagtgcagtatgaattcagcactgaatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60298" stop="61528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60598" g_stop="61203" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E403876" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60598" e_stop="61203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAA</genome_strand>
        <mrna_strand>TGACTTTTGGATCCCCTCTTGTTGGCAACAAGATATTGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCATACATTTTGTCATGAAGTACGACATTGTCCCCAGGATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGCAATCTCTCCCTTCATCAATCCGAAGTCCCAGTATTCTCAGCGCGATGCTGTTGCACGATCAAGTAATGCATTGAATTTCTTTATGACTGTAATGAGGAATGCATCCTCTGTTGCAAGCTATGCTGCATGTAATCTGAAGGGATGCACAAACTTGCTGTTGGAAACTGTTTCCAACATTGTTCAACTCAGCCCTTATAGACCCTTTGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAACTGAGTTCCGAAGCAGAAGCTGCAGTAGTCGGTGCTAGAAGCTTAAATGATCATCTGTTATATAAAAACGAAATTCAAGATAGCTTAGAGATGCAAGATGTTGTTCATCTCAACAATCTCACTGATATTCCTTTATCTTCAAATGTTGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433665" ref_strand="+" ref_description="SGN-E433665 [STM-58-H2]">
      <seq>tgacttttggatcccctcttgttggcaacaagatattgtctcatgccctcaggcgcgaaaactgggctcgttacttcatacattttgtcatgaagtacgacattgtccccaggatgatgcttgctcctctttcatcaattcaagaattgcttcaagcaatctctcccttcatcaatccgaagtcccagtattctcagcgcgatgctgttgcacgatcaagtaatgcattgaatttctttatgactgtaatgaggaatgcatcctctgttgcaagctatgctgcatgtaatctgaagggatgcacaaacttgctgttggaaactgtttccaacattgttcaactcagcccttatagaccctttggaacttacatcttctgcactgggaataggaaactggttgtcgttgagaaccctgatgctgttctgcagttactgttctattcctctcaactgagttccgaagcagaagctgcagtagtcggtgctagaagcttaaatgatcatctgttatataaaaacgaaattcaagatagcttagagatgcaagatgttgttcatctcaacaatctcactgatattcctttatcttcgaatgttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60298" stop="61500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60598" g_stop="61201" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E433665" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60598" e_stop="61201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCC</genome_strand>
        <mrna_strand>TGACTTTTGGATCCCCTCTTGTTGGCAACAAGATATTGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCATACATTTTGTCATGAAGTACGACATTGTCCCCAGGATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGCAATCTCTCCCTTCATCAATCCGAAGTCCCAGTATTCTCAGCGCGATGCTGTTGCACGATCAAGTAATGCATTGAATTTCTTTATGACTGTAATGAGGAATGCATCCTCTGTTGCAAGCTATGCTGCATGTAATCTGAAGGGATGCACAAACTTGCTGTTGGAAACTGTTTCCAACATTGTTCAACTCAGCCCTTATAGACCCTTTGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAACTGAGTTCCGAAGCAGAAGCTGCAGTAGTCGGTGCTAGAAGCTTAAATGATCATCTGTTATATAAAAACGAAATTCAAGATAGCTTAGAGATGCAAGATGTTGTTCATCTCAACAATCTCACTGATATTCCTTTATCTTCGAATGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200920" ref_strand="+" ref_description="SGN-E200920 [cLEC-5-D10]">
      <seq>ttgagttccgaagcagaagctgcagtagttgttcctagaagcttaaacgatcacctgttatataaaaacgaaatgcaagatagcttagagatgcaagatgttctccatctcaacaatcttactgatattcctttatcttcaaatgttgatccaagtatgaattcagcactgaatgaccttggcctgagtacaagagcaaggctgtgtcttcgtgcagcaggagagtgggagaagcagaagaagaagaacgaggaaaagattgaacaaaataagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60750" stop="61718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61050" g_stop="61235" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61236" i_stop="61326" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61327" g_stop="61418" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="278" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E200920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61050" e_stop="61235"/>
          <exon e_start="61327" e_stop="61418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTGGTAAGCAATAGATATGGTTAATTTTTCATTTTCAGCAGGATTGTCTATCTTGCTCAAGCTAATAGGCGTTTTCACGTTATCTAAATCTCAGAGTACAAGAGCAAGGCTGTGTCTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGAAG</genome_strand>
        <mrna_strand>TTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTG...........................................................................................AGTACAAGAGCAAGGCTGTGTCTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615920" ref_strand="+" ref_description="SGN-E615920 [65724]">
      <seq>cttcgtgcagcaggagagtgggagaagcagaagaagaagaacgaggaaaagattgaacaaaataagagcagcatcagggacgcattaagcaagatacaggagtaccagaccaagtgtgatatccgtaaagttgggtattatgatgcattcaagattcaaaacaccgaagatgacttcaaagctaatgtgaaaaggcttgagctagcaggtatatgggatgagatcattgaaatgttgaaaaggtatgagctcccagatagctttgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgataaagtgcaagctggtgcacgttccgagtcttgtttctgggccgaagtggaggaactaagaaacaagctatttgcacaagtgcaagacagggttctgagtttagaaacagctgcgaatatctggatccagagtagccttcttggcgatgatgttttcttccctgaatctacctataccaaatggtggaaaacactccctcctcagcacaaacagacatcttgggtatcagagaaaataactccttagcgccttgcgccttaatatcttgataaagatggtatccgagccaacttacagacacctataacattccaacacgtatattccaatgcccttaataatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61048" stop="62428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61348" g_stop="62128" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E615920" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61348" e_stop="62128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGAAGCATCAGGGACGCATTAAGCAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCA</genome_strand>
        <mrna_strand>CTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGCAGCATCAGGGACGCATTAAGCAAGATACAGGAGTACCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGAAGATGACTTCAAAGCTAATGTGAAAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTTGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAAAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCCGAAGTGGAGGAACTAAGAAACAAGCTATTTGCACAAGTGCAAGACAGGGTTCTGAGTTTAGAAACAGCTGCGAATATCTGGATCCAGAGTAGCCTTCTTGGCGATGATGTTTTCTTCCCTGAATCTACCTATACCAAATGGTGGAAAACACTCCCTCCTCAGCACAAACAGACATCTTGGGTATCAGAGAAAATAACTCCTTAGCGCCTTGCGCCTTAATATCTTGATAAAGATGGTATCCGAGCCAACTTACAGACACCTATAACATTCCAACACGTATATTCCAATGCCCTTAATAATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206315" ref_strand="+" ref_description="SGN-E206315 [cLEC-23-E20]">
      <seq>cgcattaagcaagatacaggagtatcagaccaagtgtgatatccgtaaagttgggtattatgatgcattcaagattcaaaacaccgatgatgacttcaatgctaatgtgagaaggcttgagctagcaggtatatgggatgagatcattgaaatgttgaaaaggtatgagctcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61128" stop="62298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61428" g_stop="61998" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E206315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61428" e_stop="61998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTAAGCAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCA</genome_strand>
        <mrna_strand>CGCATTAAGCAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372248" ref_strand="+" ref_description="SGN-E372248 [TUS-30-H19]">
      <seq>caagatacaggagtatcagaccaagtgtgatatccgtaaagttgggtattatgatgcattcaagattcaaaacaccgatgatgacttcaatgctaatgtgagaaggcttgagctagcaggtatatgggatgagatcattgaaatgttgaaaaggtatgagctcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61137" stop="62418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61437" g_stop="62118" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E372248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61437" e_stop="62118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCT</genome_strand>
        <mrna_strand>CAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285699" ref_strand="+" ref_description="SGN-E285699 [cLES-5-F18]">
      <seq>caagatacaggagtatcagaccaagtgtgatatccgtaaagttgggtattatgatgcattcaagattcaaaacaccgatgatgacttcaatgctaatgtgagaaggcttgagctagcaggtatatgggatgagatcattgaaatgttgaaaaggtatgagctcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61137" stop="62275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61437" g_stop="61975" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E285699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61437" e_stop="61975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACAC</genome_strand>
        <mrna_strand>CAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372247" ref_strand="+" ref_description="SGN-E372247 [TUS-30-H19](-)">
      <seq>aatgtgagaaggcttgagctagcaggtatatgggatgagatcattgaaatgttgaaaaggtatgagctcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcagataataagaaaaagatagaagtaacagctttacattacttcaatgagattaacccagatatatgtagctcagataattgaagatgtttcaactttcatgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61231" stop="62552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61531" g_stop="62259" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E372247" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61531" e_stop="62259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTT</genome_strand>
        <mrna_strand>AATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357547" ref_strand="+" ref_description="SGN-E357547 [cTOS-23-N19]">
      <seq>tcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcagataataagaaaaagatagaagtaacagctttacattacttcaatgagattaacccagatatatgtagctcagataattgaagatgtttcaactttcatgagaactgctttacttgtatggtagattagtagcaagaatagcacaacattncagtatttaagtttgggatacnaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61298" stop="62627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61598" g_stop="62329" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E357547" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61598" e_stop="62329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACT</genome_strand>
        <mrna_strand>TCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGC-ACAACATTNCAGTATTTAAGTTTGGGATACNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357867" ref_strand="+" ref_description="SGN-E357867 [cTOS-24-B21]">
      <seq>tcccagatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcagataataagaaaaagatagaagtaacagctttacattacttcaatgagattaacccagatatatgtagctcagataattgaagatgtttcaactttcatgagaactgctttacttgtatggtagattagtagcaagaatagcaacaacatttcagtatttaagttggggatacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61298" stop="62627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61598" g_stop="62329" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E357867" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61598" e_stop="62329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACT</genome_strand>
        <mrna_strand>TCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTTCAGTATTTAAGTTGGGGATACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212532" ref_strand="+" ref_description="SGN-E212532 [cLEC-74-I16]">
      <seq>gatagcttcgagggacgaagagactggatagaactagggacacagtttcgcaggcaagttgagcccttggatattgcaaactattacaggcacttgaagaatgaagatactggaccttacttgatcagggctaggcctaagcgttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcngataataagaaaaagatagaaggtacagctttacattacttcaatgagattaacccagatatatgtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61303" stop="62518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61603" g_stop="62218" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E212532" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61603" e_stop="62218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCT</genome_strand>
        <mrna_strand>GATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCNGATAATAAGAAAAAGATAGAAGGTACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433666" ref_strand="+" ref_description="SGN-E433666 [STM-58-H2]">
      <seq>catcttatttgggtttacatggaaatattctgagtttgttgtatcccaaccttaaatacttgaatgttgctattcttgctgctaatttaccatacaagtaaagcagttctcaggaaaattgaaacatcatcaattatctgagctacatacatctggttactctcattgaagtaatgtggagctgctagtctatctttttattattattatcttaagcaaataccatctggctgctattattaggggcattggaatatacgtggtggaatgttataggtgtctgtaagttggctcggataccatctttatcaagatattaaggcgcaaggcgctaaggagttattttctctgatacccaagatgtctgtttgtgctgaggagggagtgttttccaccatttggtataggtagattcagggaagaaaacatcatcgccaagaaggctactctggatccagatattcgcagctgtttctaaactcagaaccctgtcttgcacttgtgcaaatagcttgtttcttagttcctccacttcggcccagaaacaagactcggaacgtgcaccagcttgcactttatcaaaatgctctaaccatctctgtgtgaaccgataacgcttaggcctagccctgatcaagtaaggtccagtatcttcattcttcaagtgcctgtaatagtttgcaatatccaagggctcaacttgcctgcgaaactgtgtccctagttctatccagtctcttcgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62656" stop="61315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62362" g_stop="61615" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E433666" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62362" e_stop="61615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAATTCTCGGTGTACATGGAAAAATTGTGAGTTTGTTGTATCCCAAACTTAAATACTTGAATGTTGTTGCTATTCTTGCTACTAATCTACCATACAAGTAAAGCAGTTCTCATGAAAGTTGAAACATCTTCAATTATCTGAGCTACATATATCTGGGTTAATCTCATTGAAGTAATGTAAAGCTGTTACT-TCTATCTTT-TTCTTATTATCTGAAGCAAATACCATCTGGCTGCTCTTATTAGGGGCATTGCAACATATGTGGTGGAATGTTATAGGTGTCTGTGAGTTGGCTGGGATACCATCTTTATCAAGATATTAGGGCGCAAGGCGCTAAGGAGTTATTTTCCTTGACACCCAAGATGCCTGTTTGTGCTGAGGTGGGAGTGTTTTCCACCACTTGGTATAGGTAGATTCAGGGAAGAAAATATCATCGCCAAGAAGGCTACTCTGGATCCAGCCATTTGCAGCTGTTTCTAAATTCAAAACCCTGTCTTGCACTTGTGCAAATGGCTTGTTTCTTAGTTCCTCAACTTCTGCCCAGAAACAAGACTCGGAACGTGCACCAGCTTGCACTCTATCAAAATGCTCTAACCATCTCTGTGTGAACCGATAACGCTTAGGCCTAGCCCTGATCAAGTAAGGTCCAGTATCTTCATTCTTCAAGTGCCTGTAATAGTTTGCAATATCCAAGGGCTCAACTTGCCTGCGAAACTGTGTCCCTAGTTCTATCCAGTCTCTTCGTCC</genome_strand>
        <mrna_strand>CATCTTATT-TGGGTTTACATGGAAATATTCTGAGTTTGTTGTATCCCAACCTTAAATACTTGAATGTTG---CTATTCTTGCTGCTAATTTACCATACAAGTAAAGCAGTTCTCAGGAAAATTGAAACATCATCAATTATCTGAGCTACATACATCT-GGTTACTCTCATTGAAGTAATGTGGAGCTGCTAGTCTATCTTTTTATTATTATTATCTTAAGCAAATACCATCTGGCTGCTATTATTAGGGGCATTGGAATATACGTGGTGGAATGTTATAGGTGTCTGTAAGTTGGCTCGGATACCATCTTTATCAAGATATTAAGGCGCAAGGCGCTAAGGAGTTATTTTCTCTGATACCCAAGATGTCTGTTTGTGCTGAGGAGGGAGTGTTTTCCACCATTTGGTATAGGTAGATTCAGGGAAGAAAACATCATCGCCAAGAAGGCTACTCTGGATCCAGATATTCGCAGCTGTTTCTAAACTCAGAACCCTGTCTTGCACTTGTGCAAATAGCTTGTTTCTTAGTTCCTCCACTTCGGCCCAGAAACAAGACTCGGAACGTGCACCAGCTTGCACTTTATCAAAATGCTCTAACCATCTCTGTGTGAACCGATAACGCTTAGGCCTAGCCCTGATCAAGTAAGGTCCAGTATCTTCATTCTTCAAGTGCCTGTAATAGTTTGCAATATCCAAGGGCTCAACTTGCCTGCGAAACTGTGTCCCTAGTTCTATCCAGTCTCTTCGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210900" ref_strand="+" ref_description="SGN-E210900 [cLEC-69-C8]">
      <seq>gttatcggttcacacagagatggttagagcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcagataataagaaaaagatagaagtaacagctttacattacttcaatgagattaacccagatatatgtagctcagataattgaagatgtttcaactttcatgagaactgctttacttgtatggtagattagtagcaagaatagcaacaacattcaagtatttaagtttgggatacaacaaactcacaatttttccatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61445" stop="62647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61745" g_stop="62347" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E210900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61745" e_stop="62347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACTCACAATTTTTCCATGTAC</genome_strand>
        <mrna_strand>GTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACTCACAATTTTTCCATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375764" ref_strand="+" ref_description="SGN-E375764 [TUS-15-A10](-)">
      <seq>gcattttgatagagtgcaagctggtgcacgttccgagtcttgtttctgggcagaagttgaggaactaagaaacaagccatttgcacaagtgcaagacagggttttgaatttagaaacagctgcaaatggctggatccagagtagccttcttggcgatgatattttcttccctgaatctacctataccaagtggtggaaaacactcccacctcagcacaaacaggcatcttgggtgtcaaggaaaataactccttagcgccttgcgccctaatatcttgataaagatggtatcccagccaactcacagacacctataacattccaccacatatgttgcaatgcccctaataagagcagccagatggtatttgcttcagataataagaaaaagatagaagtaacagctttacattacttcaatgagattaacccagatatatgtagctcagataattgaagatgtttcaactttcatgagaactgctttacttgtatggtagattagtagcaagaatagcaacaacattcaagtatttaagtttgggatacaacaaactcacaatttttccatgtacaccgagaatttcaaactttttatgttttaagatccttcaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61473" stop="62695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61773" g_stop="62395" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E375764" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61773" e_stop="62395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACTCACAATTTTTCCATGTACACCGAGAATTTCAAACTTTTTATGTTTTAAGATCCTTCAAGTAACGAA</genome_strand>
        <mrna_strand>GCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACTCACAATTTTTCCATGTACACCGAGAATTTCAAACTTTTTATGTTTTAAGATCCTTCAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585701" ref_strand="+" ref_description="SGN-E585701 [68164]">
      <seq>gctttcaggcgtggaggcctgatgatgaattccgtccccaaagtcttccaaatttgtcaaaacagtatacgttccctatgaattcagggcggcattaccggggaggctctgtctggggatgtaaaagtgcagcaataccgacatcatgtcctatatgctgtgaggatttggattttacagatacaagttttctcccttgtccttgcgggtttaggctttgtctcttttgtcacaagaagattcttgaggaggatgggcgttgtccagcttgcaggaagcagtataaacatgacacggttgggggagagacaaccaaagatgcaggcggcctgatgtttcaagtggctcgttcctgtagcatgatctcaaggtcgtaggaagattctgtttttctataaatgtgtatgttgtgtcctctttctctgtgtggcttgactttgtctttgttagactccaatttttcttagctagatgttgatataggatcgagattctgaaagcacaggggaactgttaaagttctcttataatttttctcattatagatatgatgcttgtgctgatgtagaagactccttatgtgaatagataaggtggataaaggttagatagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64526" stop="63315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64226" g_stop="63615" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E585701" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64226" e_stop="63615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCAGGCGTGGAGGCCCGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAATATACTTTCCCTATGAATTCAGGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACAGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTAAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATGAATGTGTATGTTGTGTCCTCTTTCTCTGCGTGGCTTGA------CTTTGTTAGACTCCAATTTTTCTTAGCATTAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAACTGTTATAGTTCTCTTATAATTTTTCTCATTATAGATATGATGCTTGTGCTGATGTAGAAGACTCCTTATGTGAATAGATAAGGTGGATAAAGGTTAGATAGATTG</genome_strand>
        <mrna_strand>GCTTTCAGGCGTGGAGGCCTGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAGTATACGTTCCCTATGAATTCAGGGCGGCATTACCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCAATACCGACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACAGATACAAGTTTTCTCCCTTGTCCTTGCGGGTTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACGGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTCAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATAAATGTGTATGTTGTGTCCTCTTTCTCTGTGTGGCTTGACTTTGTCTTTGTTAGACTCCAATTTTTCTTAGC--TAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAACTGTTAAAGTTCTCTTATAATTTTTCTCATTATAGATATGATGCTTGTGCTGATGTAGAAGACTCCTTATGTGAATAGATAAGGTGGATAAAGGTTAGATAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436283" ref_strand="-" ref_description="SGN-E436283 [STM-62-D18]">
      <seq>tgatgaattccgtccccaaagtcttccaaatttgtcaaaacagtatacgttccctatgaattcagggcggcattaccggggaggctctgtctggggatgtaaaagtgcagcaataccgacatcatgtcctatatgctgtgaggatttggattttacagatacaagttttctcccttgtccttgcgggtttaggctttgtctcttttgtcacaagaagattcttgaggaggatgggcgttgtccagcttgcaggaagcagtataaacatgacacggttgggggagagacaaccaaagatgcaggcggcctgatgtttcaagtggctcgttcctgtagcatgatctcaaggtcgtaggaagattctgtttttctataaatgtgtatgttgtgtcctctttctctgtgtggcttgactttgtctttgttagactccaatttttcttagctagatgttgatataggatcgagattctgaaagcacaggggaactgttaaagttctcttataatttttctcattatagatatgatgcttgtgctgatgtagaagactccttatgtgaatagataaggtggataaaggttagatagatgaaaaaaaaaaaaaaaaactcgagggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64504" stop="63313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64204" g_stop="63619" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="611"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E436283" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64204" e_stop="63619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAATATACTTTCCCTATGAATTCAGGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACAGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTAAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATGAATGTGTATGTTGTGTCCTCTTTCTCTGCGTGGCTTGA------CTTTGTTAGACTCCAATTTTTCTTAGCATTAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAACTGTTATAGTTCTCTTATAATTTTTCTCATTATAGATATGATGCTTGTGCTGATGTAGAAGACTCCTTATGTGAATAGATAAGGTGGATAAAGGTTAGATAG</genome_strand>
        <mrna_strand>TGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAGTATACGTTCCCTATGAATTCAGGGCGGCATTACCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCAATACCGACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACAGATACAAGTTTTCTCCCTTGTCCTTGCGGGTTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACGGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTCAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATAAATGTGTATGTTGTGTCCTCTTTCTCTGTGTGGCTTGACTTTGTCTTTGTTAGACTCCAATTTTTCTTAGC--TAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAACTGTTAAAGTTCTCTTATAATTTTTCTCATTATAGATATGATGCTTGTGCTGATGTAGAAGACTCCTTATGTGAATAGATAAGGTGGATAAAGGTTAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436282" ref_strand="+" ref_description="SGN-E436282 [STM-62-D18]">
      <seq>ggaagctgttgctgatgctttagctgccactgataaggagcaggagcagcataactctagcttggattcagctccagaggtgcatatgagttttcaacaagaagtttctgacgggaaggtaccagcgatggatacatcacagcagaatcccaagggcagaggaactatacctggatttcctgtcagctttcaggcgtggaggcctgatgatgaattccgtccccaaagtcttccaaatttgtcaaaacagtatacgttccctatgaattcagggcggcattaccggggaggctctgtctggggatgtaaaagtgcagcaataccgacatcatgtcctatatgctgtgaggatttggattttacagatacaagttttctcccttgtccttgcgggtttaggctttgtctcttttgtcacaagaagattcttgaggaggatgggcgttgtccagcttgcaggaagcagtataaacatgacacggttgggggagagacaaccaaagatgcaggcggcctgatgtttcaagtggctcgttcctgtagcatgatctcaaggtcgtaggaagattctgtttttctataaatgtgtatgttgtgtcctctttctctgtgtggcttgactttgtctttgttagactccaatttttcttagctagatgttgatataggatcgagattctgaaagccaggggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64711" stop="63419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64411" g_stop="63719" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E436282" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64411" e_stop="63719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTGTTGCTGATGCTTTAGCTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTAGCTTGGATTCAGCTCCACAGGTTCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCAGCGCTGGATACATCACAGCAGAATCCCAAGGGCAGAGGAACTATACCTGTATTTCCTGTCAGCTTTCAGGCGTGGAGGCCCGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAATATACTTTCCCTATGAATTCAGGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACAGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTAAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATGAATGTGTATGTTGTGTCCTCTTTCTCTGCGTGGCTTGA------CTTTGTTAGACTCCAATTTTTCTTAGCATTAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAACT</genome_strand>
        <mrna_strand>GGAAGCTGTTGCTGATGCTTTAGCTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTAGCTTGGATTCAGCTCCAGAGGTGCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCAGCGATGGATACATCACAGCAGAATCCCAAGGGCAGAGGAACTATACCTGGATTTCCTGTCAGCTTTCAGGCGTGGAGGCCTGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAGTATACGTTCCCTATGAATTCAGGGCGGCATTACCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCAATACCGACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACAGATACAAGTTTTCTCCCTTGTCCTTGCGGGTTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACGGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTCAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATAAATGTGTATGTTGTGTCCTCTTTCTCTGTGTGGCTTGACTTTGTCTTTGTTAGACTCCAATTTTTCTTAGC--TAGATGTTGATATAGGATCGAGATTCTGAAAGC-CAGGGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460545" ref_strand="+" ref_description="SGN-E460545 [cPRO-31-J23]">
      <seq>ggaagctgttgctgatgctttagctgccactgataaggagcaggagcagcataactctagcttggattcagctccagaggtgcatatgagttttcaacaagaagtttctgacgggaaggtaccagcgatggatacatcacagcagaatcccaagggcagaggaactatacctggatttcctgtcagctttcaggcgtggaggcctgatgatgaattccgtccccaaagtcttccaaatttgtcaaaacagtatacgttccctatgaattcagggcggcattaccggggaggctctgtctggggatgtaaaagtgcagcaataccgacatcatgtcctatatgctgtgaggatttggattttacagatacaagttttctcccttgtccttgcgggtttaggctttgtctcttttgtcacaagaagattcttgaggaggatgggcgttgtccagcttgcaggaagcagtataaacatgacacggttgggggagagacaaccaaagatgcaggcggcctgatgtttcaagtggctcgttcctgtagcatgatctcaaggtcgtaggaagattctgtttttctataaatgtgtatgttgtgtcctctttctctgtgtggcttgactttgtctttgttagactccaatttttcttagctagatgttgatataggatcgagattctgaaagcacaggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64711" stop="63421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64411" g_stop="63721" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E460545" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64411" e_stop="63721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTGTTGCTGATGCTTTAGCTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTAGCTTGGATTCAGCTCCACAGGTTCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCAGCGCTGGATACATCACAGCAGAATCCCAAGGGCAGAGGAACTATACCTGTATTTCCTGTCAGCTTTCAGGCGTGGAGGCCCGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAATATACTTTCCCTATGAATTCAGGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACAGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTAAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATGAATGTGTATGTTGTGTCCTCTTTCTCTGCGTGGCTTGA------CTTTGTTAGACTCCAATTTTTCTTAGCATTAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAA</genome_strand>
        <mrna_strand>GGAAGCTGTTGCTGATGCTTTAGCTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTAGCTTGGATTCAGCTCCAGAGGTGCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCAGCGATGGATACATCACAGCAGAATCCCAAGGGCAGAGGAACTATACCTGGATTTCCTGTCAGCTTTCAGGCGTGGAGGCCTGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAGTATACGTTCCCTATGAATTCAGGGCGGCATTACCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCAATACCGACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACAGATACAAGTTTTCTCCCTTGTCCTTGCGGGTTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACGGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTCAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATAAATGTGTATGTTGTGTCCTCTTTCTCTGTGTGGCTTGACTTTGTCTTTGTTAGACTCCAATTTTTCTTAGC--TAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707130" ref_strand="+" ref_description="SGN-E707130 [FA32AF02]">
      <seq>catgtctccaagcaggaacttaatggtgggggcggggtttgtgagcaggggatgcaggttactaatgaaaagggccaattgatgaagaagtttgctatagagccgagaggagaagcacaggaaagtgggggttacatgaacacctacggtgattttgattcaccttctaatagccccaccagtcacactagtagtgtgttggaaggaaattattctgggaccaatttcactggtggcagcggcagtagcagcaatagtagcagtggcggttttagtatcagtggtgggtgttgctcagtaagtatgactgaggaagataacgaaggggaccatgactgcttggatgattgggaagctgttgctgatgctttaactgccactgataaggagcaggagcagcataactctatcttggattcagctccacaggttcatatgagttttcaacaagaagtttctgacgggaaggtaccatcgctggatacatcacagcataatcccaagggcagaggaactatacctgtatttcctgtcagctttcgggcgtggaggcccgatgatgaattccgtccccaaagtcttcaacatttgtcaaaacaatatactttccctatgaattcacggcgtcattgccggggaggctctgtctggggatgtaaaagtgcagcgatacccacatcatgtcctatatgctgtgaggatttggattttaccgatacaagttttctcccttgtccttgcggatttaggctttgtctcttttgtcacaagaagattcttgaggaggatgggcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65060" stop="63665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64761" g_stop="63965" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E707130" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64761" e_stop="63965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTCCAAGCAGGAACTTAATGGTGGGGGCGGGGTTTGTGAGCAGGGGATGCAGGTTACTAATGAAAAGGGCCAATTGATGAAGAAGTTTGCTATAAAGCCGAGAGGAGAAGCAGAGGAAAGTGGGGGTTACATGAACACCTACAGTGATTTTGATTCACCTTCTAATAGCCCCACCAGTCACACTAGTAGTGTGTTGGAAGGAAATTATTCTGGGACCAATTTCACTGGTGGCAGCGGCAGTAGCAGCAGTAGTAGCAGTGGCGGTTTTAGTAGCAGTGGTGGGTGTTGCTCAGTAAGTATGAGTGAGGAAGATAACGAAGGGGACGATGACTGCTTGGATGATTGGGAAGCTGTTGCTGATGCTTTAGCTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTAGCTTGGATTCAGCTCCACAGGTTCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCAGCGCTGGATACATCACAGCAGAATCCCAAGGGCAGAGGAACTATACCTGTATTTCCTGTCAGCTTTCAGGCGTGGAGGCCCGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAATATACTTTCCCTATGAATTCAGGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTG</genome_strand>
        <mrna_strand>CATGTCTCCAAGCAGGAACTTAATGGTGGGGGCGGGGTTTGTGAGCAGGGGATGCAGGTTACTAATGAAAAGGGCCAATTGATGAAGAAGTTTGCTATAGAGCCGAGAGGAGAAGCACAGGAAAGTGGGGGTTACATGAACACCTACGGTGATTTTGATTCACCTTCTAATAGCCCCACCAGTCACACTAGTAGTGTGTTGGAAGGAAATTATTCTGGGACCAATTTCACTGGTGGCAGCGGCAGTAGCAGCAATAGTAGCAGTGGCGGTTTTAGTATCAGTGGTGGGTGTTGCTCAGTAAGTATGACTGAGGAAGATAACGAAGGGGACCATGACTGCTTGGATGATTGGGAAGCTGTTGCTGATGCTTTAACTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTATCTTGGATTCAGCTCCACAGGTTCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCATCGCTGGATACATCACAGCATAATCCCAAGGGCAGAGGAACTATACCTGTATTTCCTGTCAGCTTTCGGGCGTGGAGGCCCGATGATGAATTCCGTCCCCAAAGTCTTCAACATTTGTCAAAACAATATACTTTCCCTATGAATTCACGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560050" ref_strand="+" ref_description="SGN-E560050 [19643]">
      <seq>cttctccatttcaatcccaacaactaaacgttcgaaggcaaacgccggaaaatgggagcagcaaacaaggcaggggacttggtatttaaggctttcgtgggaggactcggcgtcaccaccatttatctgacggcgacattctccgtcaacgtctaccgtggtctctcttggcataaagcccaatcgaaaaatgagaaagaaggatctgtagttcagcaggaagaatgacccgtcttcaagtcctacccttggtcatcgtgttgctagctgaggtcctgccagaaatttcggagtatatctgaatcttgtcgcattatgtaacgactctttcacagtttttccataggatacttaaaacacagcagcacttcataatcttctccatccaacaaacagattggatggacggtatgtcatgtttattcattttccattgctatattgttgctgaaattctccacaacgatattcgaagttccacagttgtatgatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71566" stop="68360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71254" g_stop="71100" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="186" r_length="155" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71099" i_stop="70622" i_length="478">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70621" g_stop="70603" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="204" r_length="18" r_score="0.632"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70602" i_stop="69300" i_length="1303">
            <donor d_prob="0.039" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69299" g_stop="69277" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="225" r_length="21" r_score="0.565"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69276" i_stop="69180" i_length="97">
            <donor d_prob="0.725" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69179" g_stop="69139" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="261" r_length="36" r_score="0.561"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69138" i_stop="68898" i_length="241">
            <donor d_prob="0.000" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68897" g_stop="68661" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="494" r_length="233" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="508"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E560050" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71254" e_stop="71100"/>
          <exon e_start="70621" e_stop="70603"/>
          <exon e_start="69299" e_stop="69277"/>
          <exon e_start="69179" e_stop="69139"/>
          <exon e_start="68897" e_stop="68661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGGCAAACGCCGGGAAATGGGAGCAGCAAGCAAGGCAGGGGACTTGTTATTTAAGGCCTTCGTCGGAGGGCTCGGTGTCACCACCATTTACCTCACGGCCACATTTTCCGTCAACGTATACCGTGGTCTCTCTTGGCATAAAGCACAATCGGTAACCTCCACAATCCCTTATAAACAGTCAAGTGTATGATTGCTAGTTGTTTTTCTATTTGGTGGAAAACCTAATTGTGGGATTTTTAGCTGTGATGCCTGAGAATTTTTATGGGTTTTGTGTATTTTATTTGCGAATATATCTTGATCCATTTTTAGTATCTCCATTTGATCGTCCGGCATGATTATTTGATTTCGTTCGTTTATCTATTACATGGATTATTCATTTGCCTTTAACTTGCTCAGGTTGTACGTCTGATATATGGTTTTGGTTGGGTCGTTGAAAATATGCTTAAACTTAGTTAAGGATTAGACTTAGTGTACCTGATACTTTGCCCGAATACCTACTTTAACATACGTATTCCGTTATAATCTGTTTGTCTTACTATCATTTTAGTCCGTTTTGAAAAGAAAATCTATTTCCTTTTTTGCAACTCTTTAGTTCTAACTTTCCAAACTTTGTGGTTTGTCAAAACTAGATAAACGAATTGGAACGGAGTGAGTAGCTCCTAGTGTGTCATGAAGAATGTCTTCTAGTACTAATTTGAAAGATGGAGTATCATTTTCTTTCTCTTGTAACAATTTTTTGTCTATTGCCTTTTTGTATATTTGCCCCTTTGTATTGACACAATACATCAATGAGGATTGTTCAGCTCAAGATTAGTACCTCATGTTCTGCTGGGCGCTGGCTACTGGCCTCTACTTGAAAACCATGCTGTTCAATGCGCCAGACAGTCAAGTAGGACCGAAGTTCCTGCTGTCATTTAGGTGTTGGAAGAGCCTGTACCTTTCCCCTAAATCTATCCATATAATTTAGCTCTAATAATTTTGTGCGCTTACATAACAAGTTGCAATTTAATATTTAGTTTGTGTTAACCCATATTTATTTGAGATAAACATCAGTCAGTTGGTGACTTTTATCAAAATTAATACAAAGAAATACCTGCCTTTGTGTCTTTTTAATCATCAAACTGCTGGATGTGGACTTTTAATGAGGTGTTTAGTTACTTGAGGGTAGGAGAAGGGTAAAGGAGGGAGAAAGAAATTCATTAGTTTATGTCCCTCCCTCCCATTATTTGGAACAAGTCGAAGAGTTAAAGAGATATATTTTGTCCATTTAGTCCTTAAAGGGGTTAAAAGAGAGGACTTGGAAAGGTATCTAGCAGAACCTTTCACTTATGCTCCTATCTCCCACCTTTCTGTTCTCTTTGAAACAGACTGTAAATGATTGACTTTTCCAAAGTGGAAAAGAATGTGATAAAAAATGGAGCTTTTCTGCTGCCAGAGATCACTGATCAGTGGAACTCTTTTCTGGCCTATATCAGAGTTCATCTAACATGCAAGGTGGATGGCTATGTTGCTTGGATCCTCCAAAAATGTTGCCGCACCTATATTGTATTCTTCAATAATGCTCTGTTTTGGGAGGATCCGACATGCAATTGCCAACATTTTTTAAGAGTCCAATCAACATAGGTTGATGGTTGTTTTGGTTTTGTTGGAGTCTTTCCAATTGGGCATAATGATTTTAGTTATCAAACTACCAAGTACTGGTGCACAAAAACTGGTGTTTTTATGTTGGTTGATGTATCTCTTTTTTTGCTTTAGTAGTATAAGGCTTAGCAACTCAAGTGCTTTCATTTCTTGAGCACTAATGATATATTCAAGTGCAATTGTTTCTAGTGATCTAGTGAGTTTCTGAAAGATGTGTTTGAACATGGGGGTTCTGATTGAGAACATACTTGAAGAGTTGTTTCTTCTAAGTTGGCTACTTCACTCATTGTGTATGTACAATTGCTTTAAGGCTGATGTTGTGCTATGAGTCAAGTAAGCAGCTAGACCACCCTTCATGTTTTGTGCTTGCTAACGTGCTATATTTGCTAATTGGTATGAAATTTGAAACACTATGTCCTTCTAGTTTCAGGCACCTGGCTATGCATCACATATGCTCCCTGCACATTTTGTGTGGTTTCTGTTAGTGACCTTACGTGCATATTCAACCTTTGGTCTATTAAATGCTGACAGTGCACCGTTTCTCCTAGATCATCTTTGCTGAATCTGAATATTACGTATCATATGGTTCATTAATTAAATTGTTAGTTTTACAAGAACACTTTCTGATATATGACCTTTTTTCTTCCTGCAAATGTAGAAAAATGAGAAAGAAGGATCTGTAGTTCAGCAGGAAGAATGACCTGTCTTCAAGTCCTACCCTTGGGGTCCTTCCAGAAATTTCGGAGTATATCTGAATCTTGTCGCATTATGTAACGACTTTTTCACAGTTTGTCCGTAGGATATTTAAAACACAGCAGCACTTCATAATCTTCTCCATCCAACAAACAAATTGGATGGACAAAGTATGTCATGTTTATTCAAATTCCATTGCTATATTGTTGCTGAAATTCTACACAAATACATTTGGAGTTCCACAGTTGTATGATTA</genome_strand>
        <mrna_strand>TCGAAGGCAAACGCCGGAAAATGGGAGCAGCAAACAAGGCAGGGGACTTGGTATTTAAGGCTTTCGTGGGAGGACTCGGCGTCACCACCATTTATCTGACGGCGACATTCTCCGTCAACGTCTACCGTGGTCTCTCTTGGCATAAAGCCCAATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGAGAAAGAA-GGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTAGTTCAGC-AGGA-AGAA.................................................................................................TGACCCGTCT-T-CAAGTCCTA--C-CCTTGGTCATCGTGT.................................................................................................................................................................................................................................................TGCTA-GC-TGAGGTCCTGCCAGAAATTTCGGAGTATATCTGAATCTTGTCGCATTATGTAACGACTCTTTCACAGTTTTTCCATAGGATACTTAAAACACAGCAGCACTTCATAATCTTCTCCATCCAACAAACAGATTGGATGGAC--GGTATGTCATGTTTATTCATTTTCCATTGCTATATTGTTGCTGAAATTCTCCACAACGATATTCGAAGTTCCACAGTTGTATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702075" ref_strand="+" ref_description="SGN-E702075 [FA17CH11]">
      <seq>gataattcatgctgctgaaggaaatctgtcagatagggaaatcattcaaaatgaaacattttctgaacattctttgaagttggaaaacatgacaaccaataatttcttgacagatgattcaactgtagccagaggcaatgctccaagtgaagattcttctgagatggcccaaggattgtccacaggaaaaggtgagcaagtcatggagatgggatatgcagaaagttctgataataaaccgcagtctattgaggcttctggtgttcattatgaaatagatgagcatgaggacttgatggggaagatggatctttcagaagaagatattgagaatgtttgcaatcagttgttctttataaaagatctttgcaatcaactgttaaagtcagagtcaagtgtgactgatgtaaacaatcgggtccctagccaacctataaatgatagagtgtttaagtacacatacaaaagaaagaggaaaagagaattgttgagtgtatctgatgagaaagcttcaattgcaaagagctctcaaacaaaaaacatgtgtgaaactagatagtcttttcaagacacaggatgagttcattgacagaatcatctcaggacagttggcaaatggcattaggttgctcaacagctaatgtgtctctctaagaagtgctagtgaaattgtgtgtgccttgtcttctgtgctataaaataaggaatgtcttctgtcagctatctctgagattcattatgtcattaaggatggaggtttacgagtgagatgcactatccaattgattgtttacatgtccagcagaggccgtatatagccttaatgcatcggataactttttccagatcatgtttttgtatcgagaaatcactaattagtgaacctagttttattgtatattaacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76417" stop="72753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76117" g_stop="75481" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75480" i_stop="73327" i_length="2154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73326" g_stop="73052" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="910" r_length="273" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E702075" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76117" e_stop="75481"/>
          <exon e_start="73326" e_stop="73052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATTCATGCTGCTGAAGGAAATCTGTCAGATAGGGAAATCATTCAAAATGAAACATTTTCTGAACATTCTTTGAAGTTGGAAAACATGACAACCAATAATTTCTTGACAGATGATTCAACTGTAGCCAGAGGCAATGCTCCAAGTGAAGATTCTTCTGAGATGGCCCAAGGATTGTCCACAGGAAAAGGTGAGCAAGTCATGGAGATGGGATATGCAGAAAGTTCTGATAATAAACCGCAGTCTATTGAGGCTTCTGGTGTTCATTATGAAATAGATGAGCATGAGGACTTGATGGGGAAGATGGATCTTTCAGAAGAAGATATTGAGAATGTTTGCAATCAGTTGTTCTTTATAAAAGATCTTTGCAATCAACTGTTAAAGTCAGAGTCAAGTGTGACTGATGTAAACAATCGGGTCCCTAGCCAACCTATAAATGATAGAGTGTTTAAGTACACATACAAAAGAAAGAGGAAAAGAGAATTGTTGAGTGTATCTGATGAGAAAGCTTCAATTGCAAAGAGCTCTCAAACAAAAAACATGTGTGAAACTAGATAGTCTTTTCAAGACACAGGATGAGTTCATTGACAGAATCATCTCAGGACAGTTGGCAAATGGCATTAGGTTGCTCAACAGGTTGGTTTTTTGCTTATTTATTCCCTTTGATCAGTTGATAATTATGTTGTATACCTATCTTTTTTTATATACTAATTTAACTGGTATTCCTTCAAGTTGAGATATGTAGCAAGTGTTCCCTCACATGAATGTGACGATATGTATAATTTTTTGGTATGAGAAGACAGGCTGGTAGAGCTCTCGTCGAATTGTTATAATGTGCTTTTTTTACATCCAAATTGAAACAAGAGAAAGGAGAGATGTCAAATTTGATGTCTTTTTGGTTATCTAAAAGTTCTAAACATAGAAAACTTAAAAGTTCCATCTATTTTTAGATCTTTGTGGGGAATTTGCAGGAGTTCTGAGAATATGTTGCAACTCCATTAAGGTTATCTGCTTTCGGACTTACTGACCCCCTTCCACAATTTCATCAGTTCCTAACATTTACAAAGTTTATATTAAGGAGGCATCGTTCTAGTGGGAAAGGCCAAACCTTCTACTCTTAAAAAGGACTATGTTTCACTAGAAGAACTTTTGGATAATATTGTAGAAGTTTTTTTGTGTTTGACCAATCTTTCCGAAGTATCTTTCGCATTGAACTACACAAAATGACATGTAAAGATTCACTTTATAATCAAGGTCTAACCCATCGGTAGCCCCCTAAAGTTGACACTAATTTTCACTTAGACACTCCAACTCGACTTTGTTCACTTTAGACACCTCATGTCATGTCCAACTGTGTCATTTTGACACTTTTGCTGACATAACATAGTGAGTGTGATACACTCTTTACCAGTGCATGGAGAGATTATATTTAACCTATTTTCATTTAACTTTTTCTTCTTCTTACTCATTTTAGCCATCACTTTTCAAAGCTTAAACTCCATCCATGGAGAAATAGATCTAATAGTGCTACAACACCAAGAAATTTCAAGCTTAAACAACTTTTCTTATTTTGTTGTCATTCTTCCTCCTTGAGATGTTTTGAAAAAGTTTGAAATATATTTTCTTAAAAGAAAATCTAGAAAATTCTTTTAGGGAACTCTTTGTTTAAATTTGAAGAATTTGATTTTATTTGAAGTTTTAAGTAAGAGGACTTGGTTTTTCCAAAGAAATTGTGCTTTTGTAAATAATTCCTTTCAAATAGTTAAATTACTACGAAAATACATCGAAGAAAATTAAAGCAATTTGGGGTAGGGGGTTCTGGAATGTGGAGAAGACAATCTGGTGGGGTAGAGGTTGAGGATCAGGGGTGGTGGTGTTGGAGAAGACAACATAGGGCTTGTAAGTGGTTAATTCTTTTTAAAATTATTTGGATAAAATTGACACATGTCATTGGCCTTTTTTAAGAAAAACTCAAAATTCATTTTCAATAAATATGCCATGTGTCTTTGTTTAATTCGTCATTTGACACGTCATCGACGAGTGTGTTACACACACTTTACATATTTGGCTGATTATAAAAAAAAGTGTCAAAATGACACACCAAAAAAATATGACATGAGGTGTCTAAAATGGACAAATCCTAGTTGAGGTGTCTAAGTGAAAGTTAGTGTCAAATTTAGGGGGCCATCGATGAGTTAGGCCTATAATTCATATGTTTTGAATAGGTAAATTGATTTGATACATGCATTATGAGACTCTAGTTATTCAACTTCTTTTCATTAAAATACAAATGATAAATTCACAATAGAGAGAAGGAGCATGTTTATGAGACTTTGGTCATAGATGGGTTGTTAACAATGCATGACATTAGTTTTAATCCATATGATAAGGGTACTTTGTCTTCAAAAAAATAAAAAACAGCTTATGGTACTGCTCATTAAGAGAAACTATTTTTCAGTTGCTTTGCCCCAACAGAAAAATAAGCACACACTTCTTGTTTCTGAATAGTTTGGTCGAACACGCAAGTAAGCTTCTTCATAGAAAGATGTTACGGTAGTTGGAATATTCCATCAGGATAAATTTTTCGAGAAAGAACATTTAGGAATAATGAATTTATCAACTATGCTGGTTTAATTCTCAGTACTGTAGAGTAATGTTATCATATTGCACTATTTTTGTTGGCGTGCTGCAAATTTTGATGACTGTTAACATGTTAAACTAGTTTATGGTTTCTGAAAATATATTGTTTGTCTCTTGGTTGCTCATATCTTCCATGTTTGATCTCTGCAGCTAATGTGTCTCTCTAAGAAGTGCTAGTGAAATTGTGTGTGCCTTGTCTTCTGTGCTATAAAATAAGGAATGTCTTCTGTCAGCTATCTCTGAGATTCATTATGTCATTAAGGATGGAGGTTTACGAGTGAGATGCACTATCCAATTGATTGTTTACATGTCCAGCAGAGGCCGTATATAGCCTTAATGCATCGGATAACTTTTTCCCAGATCATGTTTTTGTATCGAGAAATTCACTAATTAGTGAACCTAGTTTTATTGTATATTAACTTGAG</genome_strand>
        <mrna_strand>GATAATTCATGCTGCTGAAGGAAATCTGTCAGATAGGGAAATCATTCAAAATGAAACATTTTCTGAACATTCTTTGAAGTTGGAAAACATGACAACCAATAATTTCTTGACAGATGATTCAACTGTAGCCAGAGGCAATGCTCCAAGTGAAGATTCTTCTGAGATGGCCCAAGGATTGTCCACAGGAAAAGGTGAGCAAGTCATGGAGATGGGATATGCAGAAAGTTCTGATAATAAACCGCAGTCTATTGAGGCTTCTGGTGTTCATTATGAAATAGATGAGCATGAGGACTTGATGGGGAAGATGGATCTTTCAGAAGAAGATATTGAGAATGTTTGCAATCAGTTGTTCTTTATAAAAGATCTTTGCAATCAACTGTTAAAGTCAGAGTCAAGTGTGACTGATGTAAACAATCGGGTCCCTAGCCAACCTATAAATGATAGAGTGTTTAAGTACACATACAAAAGAAAGAGGAAAAGAGAATTGTTGAGTGTATCTGATGAGAAAGCTTCAATTGCAAAGAGCTCTCAAACAAAAAACATGTGTGAAACTAGATAGTCTTTTCAAGACACAGGATGAGTTCATTGACAGAATCATCTCAGGACAGTTGGCAAATGGCATTAGGTTGCTCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATGTGTCTCTCTAAGAAGTGCTAGTGAAATTGTGTGTGCCTTGTCTTCTGTGCTATAAAATAAGGAATGTCTTCTGTCAGCTATCTCTGAGATTCATTATGTCATTAAGGATGGAGGTTTACGAGTGAGATGCACTATCCAATTGATTGTTTACATGTCCAGCAGAGGCCGTATATAGCCTTAATGCATCGGATAACTTTTT-CCAGATCATGTTTTTGTATCGAGAAA-TCACTAATTAGTGAACCTAGTTTTATTGTATATTAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543931" ref_strand="+" ref_description="SGN-E543931 [TUS-66-A2](-)">
      <seq>cgattgaaaatattctcagctccattaactccattccccaaccgataatttgtggacgaagaggaggcgtgaaagaacaaaaacacagaaaggcaatcaatgagtcaaaacctcatttcatagataaactgtagctttaatatttccaaatcaaatttggggatttcttgttatatcgagtttcgcgataaattgaagctataaatcttcggaaaagcttggaatcgagttaatttttctgtgttagagccttgagcaaaaaaaaaaccaccttcgcaaattttgctcttcacattttggtctggaaaacctcaaacgacagctttgtgcttagttcaaggaaacagcaatggatgccgacgagagattaaaagctttagaaaaggcatatacggatgtagtcttgaacacagagaaagaagcagcgacgaggattatggtgtcggaacagaaagctcaatgttttcaagaggagctccaagtggtgaaagaaaaggggctaatgacgctgatgaagctcaaagagatgatggattctaagattattgaagcagagttaacatcgttgagtcaacagaggaagattgaagaacttgaatctcaactagaggaagcagaagatattgtaagtgatctcagggttgagttgagagaagttcaagctgaacttgagaaagtcgccagcaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82857" stop="76165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82557" g_stop="82303" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82302" i_stop="80850" i_length="1453">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80849" g_stop="80742" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="364" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80741" i_stop="79397" i_length="1345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79396" g_stop="79220" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="541" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79219" i_stop="76618" i_length="2602">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76617" g_stop="76462" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="695" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E543931" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82557" e_stop="82303"/>
          <exon e_start="80849" e_stop="80742"/>
          <exon e_start="79396" e_stop="79220"/>
          <exon e_start="76617" e_stop="76462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGAAAATATTCTCAGCTCCATTAACTCCATT-CCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAGGTATGTTTTTTTTTTCCTTACAAGTTAGTAGAAGGAATGCTTGAATTTTAGAATTTCAATCTTCTCGTATTTATATCGTTTTGGTTATATAGAATAATCACTCAAGAAATTCTAATATATATGTTTTATTTTTATTTTGAATTCATGCATCTTGTTGATGCAAAGAGAAACAATGAAAAAAAATGTTCATATGAAAATGGAAGGGAAGACTATAACAGGTTGACCTGCAATGCGCCTCTACTAAAATTGAGTTCTTTTTCAATTTTTTAATGAAACATTAGGTGACAGTATATTATTTTGATTTGCTTGTTATATTTTGGACTAACACTAATATTTAATTTACTTTAATATGGGATGTTCAGTTTAATAGATATGTATATATGACTGGTTATAGTGCATACCAGTTCGATCCCGATCTACTTGAACCATGGTATTAACTCAACAACTTACTCATAGTTCACGGGATATATTGAATGAAAGTGTTAGTATGATTTAAATACGAGGAGTTGTGATGGAAAATTTTGGGACCTCGTAAAGAAATATCACATTCATCCACGAGTCATAGAAATGATTGAATTATCAGGATTATATGGTGTTTATAGATCAAATCGACCTTCTATTGATCGTAGCTTGATCATTTCACTAGTAGAGAGATGGCGTCCCGAAACTCATACTTTCACTTTAGGACCGATGAGGCGAGAATCACCTGCAAGATGTAAAAGTGTTGTATGACTTACCTGTGAATGGTGATCCAGTACTTGGTGATGAGTCGATAAGGACCATAGGAGATTGACAAAATATTTTTCAAAGATTGTTAGGTTTGGGGGAATTAGTTTAAATAATGACTTAGTTTGGTCAAAAATTTCAAATTTTATTACTTCTAACCAACTATTTCTATGGAGATTTTCTTAAACTTAAAATCTCTCCATGACTCGTAATTTTTCTATTAAAAAATATAACAATTTAAGTTTTCGAAAAAATGCTTTGCCTTAGAATAAAATGTTCTTGACAATGTAGTATATATATTAAAATATGAATATTATCGAATGACCATATATAAGTTTAACAAAATAGTTCAATCAGCTGCGGAGCCACTATATGATGAACCTCTTTCGACGAAAAATTATATTATTTTTATATGATTAAAATAATTTTTTAAGCATATATGTTAGATGTCGAATCTCCTTCAACTACTTCATGTGTGTATTTCTTCCGATTTTGAACCTCTTGTCAAAAATTCTTGCTCCGCTTCTGAGTTCAATAGTAATTTACCTAGTTTAATTTTATAAAGAAACAAGTCTTTTTAGGCCGTTGCCGCTCAAGATCCTCTTTTCCCTCCATTTTTTCCTCATGAACTGACAGTACCAGTGACAATAATGTACTTTAATTCGTTTTCAGGGGCATTTGAGTAATTTACTAAAGCGAAACAATTTCCTCCTGTTTTCTTATTAAGCAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAGGTAACAATTTTAATTTTTTATTTTTTTTGCATGTTTTCATTTTGATGATAAATGTTATTTTAATTTTCTTATATTATGTTGGAGTGAAACAGAACGAGTTTAGGATTGAGGTTTGAGCATTAATTAGTTGTAAATTTAGTGATATATTTTTGATAATTTTTGTATGTGTTTGTTACTATCTGTTGCTTCATTTGCTTTAAATCTAAGTTTTTGCTGTCTTGTTTTCTAATAATCGTGTTCTCTACCTCACAAAGGTTGTGTGGTTAGGAACTAGTGGTCAATCAAAGTGGTTGAGAAATCTGAGTTCTCTGGTTCAAAACTCAGCGGAGACTAAAGCACTAGCCGATTTTTTCCCAATTTTCCTACCCTTGGTGGACAGAGTTAGCTGACACTTGTTCCTGGTGGCAGGTGGCACAAAAAGTTGGCCTAGACACCACGGTCACAAAAGAAAAGGATGAAATGTGGTAAGGTCTAAGTTGGGTTGGTGACAGGTATCTCGTGGAATTAGTCGATGTGCGCAAAAGTTGGTTCGAATGCCACGGTCATAAAAATAGGTAGTGTGGTAAAGTCTAAGTTGGGGCGGTGGTAGGTATCATGTGGAATTAGTCATGGCGCGTGAAAGTTGGTCCGAATACCACGATAAAAAAAAGAAGGTAGAGTGGTAAGGTCTAAGTTAGGGTGGAACCAAGTAGGGTTGAAGGGGTTTATTCAAATTTATACATGGTTAAAATTCTTTATTATGTATATATAGTAGATATTGAAATCCCTTTCAACTTCTTCATGTGTTTGCTTAATGAAAATTTTGGTTCTGCCACTTGGTCTAATGCAGTGGTAAGGTGTACATTCATTTAATCTTCCCAGTATCCACTTGTGAGATTGCAACGAGTATGTTATTGTTGTTGTTTCATTTGTTAACTTTCTAACCTCCCTAGACTCCACTTTTGTGATAGCACCGAGTATGTATTTGTTGTTGTTTCATTTGTTAACATTGTAATCTCCTTAGACTCCACTTGTGTGATTGCACCGAGTATGTTGTTATTGTTGTTTCATTTGTTAACATTGTAACCTCCCTAGACTCCACTTGTGAGTTTAACCCAAGTATGTTATTGTTGTTGTTTGTAACCTTCCTAGACTCCACTTGTGAGATTGAACCGAGTATGTTATTGTTGTTGTTTCATGTGTTAACATTGTAATCTCCGTAGACTCCACTTGTGTGATTGCACTGAGTATGTTATTGTTGTTGTTTCATTTGTTAACATCGTAAGCCTCCCCAGACCATAGTGAGATTGCAATGAGTATATTGTTGTTTTTGTTACGTTTGTAATGTTTTATTTTTGGGTTACAGAGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCAAAGAGATGATGGATTCTAAGGTGAACTCTATTGAACACTAGGCATTTGGCCATGAAATTTTTTTCACTAAGAGCACTAGTGTTCTTTGCTCAAATCAATATTGACCATGTTGCAAGCGTCTACCGATCTTAGTCCCACAATCAATTTGAAGCCGAAGCCAACTATATCTCAGACTTTTCAATACTACAACTAATCCTCGGAATATTGACACTTAAGTTATAAGCATCAGATAATGATTTTAGCTAACTAACACTCTATGTGCTCCAACTATCAAATATAATCTTATCTTTATTTCAAAATTACGTCTGGAAAATCTAACCTCTGTGAATTTTTTCCTTTCCATTTTGTTGTGAAGACGTGAAAACAAAGACGTCATTGACATGCAGCCAAAAGATATGGCTGTATGAGTGTCTCATTTTCCAACAAAGGTTCACATGTCCTCCAATGCAACTCCCATTTCCACTTGGTCATCCCACTTTAAGAGTTCTTAAGTACATCTTGAATAATTTCTTGCTACCATTCTCTGAGCAAGACATTTTTATCTTTTGTAGTTCTTGTTGTTTACTAAAGCACATCAATATTCGTCTCACAAATTCACTCTGATAAGTTCTAAATGGGGACTTGTTCAATTTTATTGCTTGATAATTTATTTATTTGAGAGGGAACCCAAATCTTCATACCTTTTGTAACTACCTGTTGAGGGTGTACCAGCATTTGAGCCTTTGTTGTCAACCTCATTGAAACCTCTTGAACAAAATACGTCCCTAACTTCTCACCCTTAAATCCTATTCTAAGCATTGGTTTGTTTGAATAGCAAACATAGGCCAAAAGCCTAAGTTGGTGTGTGTCACCACCCAAAGTATACCCTAGACGTGACATGACGTATAGCACCCCGTGAGGTTTATTATGACATCTTTATTGATTAATACACAAGAGTAGGTATACTTGCTATAACCCAAAGATTAGGTCCAAGGCCGAGATAAATCTGAGATGAACACATGAGGTAGATTTTGGGTTCATGTTTATTTTTGGAGTATAGTTGAAGTCGGGGTTAACACAGCAAGTTCATTGAGAGGCAGTCTTCTGTCTTGTCAAATAGTTTTTAAAGTGAGTAATTATTTAAAAGTGAGGTGAGTAGACGTTTTTAGATAAGCAACATGGTGACATGCTAAGGACCAAAAAGTGTCGAAGATGGTCAGCTCTCAATCTGAACTCAATGAATCCTACTTGGGTGTTTTGATTGATTCCTAATTCTTCCTCACGTAAAAATGTTCTTGCAGTTTCAATAATGTAACAATGCTAAGGCATATAGGATGGAGTAAAAAGATGTTCAAATTTTGGTATCGAAATGCTCTTCTATCAAAGGATGAAATTTTTTAAAAAGCTATTTGACTTCATTTTTACCTTTTTAGTGTAGAGCGAAGTGTTTGTGTATTGATCAACAAAGATGCAATAATACATTTTTTTATCAAGAGATAGAACAAGACAAATCACTTAAAATAATTTAACACGGTTTAGAGCTTTTTGTAGTCAGTTTATAAAATGGATGTTAATGAGCTTACATGTGAGCTTGTGGAGGTGAAATGGGCCACTCATGCAGTCCACTTTTGTTCCAGACGCATGCCAACGATGTCTGAGTTTTCAGATTTTTCACAACACAATGAAAAAGGAAAGCATCCAACAGACGTTTGATTATCCTGACGTAGTTTTGGAAACAGAGATAAAATATAATTTGATTCTTGTATGTCAGTAGAGACAATATGTAATATGCGTTTGTTACCATTGTGCATGTCGACATCCTTGTTGTCGTGATACGATTGTAAGTTGTGCGGCTCCGTTGCGATATGATGAGTGGCACCAGAGTCGTTTTAGCAAGGATTGGCAGTGGTATTGATCAGTAGACACTTGCAACATGGCCAATCTTGTTGCGTAGAAACATTGAGTAATGACGATAGTGTTATTGTTATTCGAGGACTGAAATAATGGATTTATCAAAAAATAATTAGATAAAACTGCGCCTTTTTTATTTCTATTTTTTAATAAGGCAAGATAAATGCCAGTTCTTCCCATTCTAATTTGGAAAAAAGGACAAATATACCTCTGAACTATCGTAAATGGTATGCAGATACAATCTGTCATATTTTTGAGACATTGGTGCCCTTGCCGTCCAAAATCTAAAGCATATATGCCCTTTACTTTAACGGAAGACTAAATAGGGACACGTGGCATAATCTTATATATTAATCCGATATTTAATAAATGTCGGGTCGATGGATTAGATGACACGTGTATGCCCCTTTGTATAAAACGTATATATGCACTAGTTTTTGGACGGCAGGGGCATCAATGTCCCAAAAGTATGATGGAGGTTTTATGCATACCATTTACAATAGTTCGGGGTATATTTGTCCTTTTTCCCTTCTAATATTACAAAGCTTCTTTGATTCTCAGTTACAACATAAACTTCTTTTATTCCCGATTCCCCTCTGGCCAATAATTTAGTAGATGTAACCAACTTTAACTTTTGTCATTTCTTTATATATCATTCACCTAGAAGACATCTTGCAAACATATTCTTTGCCAGTATCCACTATTTATATTTTTTCCATATCTTATTGACAGATTATTGAAGCAGAGTTAACATCGTTGAGTCAACAGAGGAAGATTGAAGAACTTGAATCTCAACTAGAGGAAGCAGAAGATATTGTAAGTGATCTCAGGGTTGAGTTGAGAGAAGTTCAAGCTGAACTTGAGAAAGTCGCCAGCAAAGAAAAAGAA</genome_strand>
        <mrna_strand>CGATTGAAAATATTCTCAGCTCCATTAACTCCATTCCCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCAAAGAGATGATGGATTCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGAAGCAGAGTTAACATCGTTGAGTCAACAGAGGAAGATTGAAGAACTTGAATCTCAACTAGAGGAAGCAGAAGATATTGTAAGTGATCTCAGGGTTGAGTTGAGAGAAGTTCAAGCTGAACTTGAGAAAGTCGCCAGC-AA-AAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543932" ref_strand="+" ref_description="SGN-E543932 [TUS-66-A2]">
      <seq>accgattgaaaatattctcagctccattaactccattcccaaccgataatttgtggacgaagaggaggcgtgaaagaacaaaaacacagaaaggcaatcaatgagtcaaaacctcatttcatagataaactgtagctttaatatttccaaatcaaatttggggatttcttgttatatcgagtttcgcgataaattgaagctataaatcttcggaaaagcttggaatcgagttaatttttctgtgttagagccttgagcaaaaaaaaaaccaccttcgcaaattttgctcttcacattttggtctggaaaacctcaaacgacagctttgtgcttagttcaaggaaacagcaatggatgccgacgagagattaaaagctttagaaaaggcatatacggatgtagtcttgaacacagagaaagaagcagcgacgaggattatggtgtcggaacagaaagctcaatgttttcaagaggagctccaagtggtgaaagaaaaggggctaatgacgctgatgaagctcanagagatgatggattctaagattattgaagcagagttaacatcgttgagtcaacagaggaagattgaagaacttgaatctcaactagaggaagcagaagatattgtaagtgatctcagggttgaattgaaagaaatcaagctgaacttgaaaaagtcgccagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82859" stop="76165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82559" g_stop="82303" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82302" i_stop="80850" i_length="1453">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80849" g_stop="80742" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="365" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80741" i_stop="79397" i_length="1345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79396" g_stop="79220" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="542" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79219" i_stop="76618" i_length="2602">
            <donor d_prob="0.635" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76617" g_stop="76465" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="694" r_length="152" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E543932" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82559" e_stop="82303"/>
          <exon e_start="80849" e_stop="80742"/>
          <exon e_start="79396" e_stop="79220"/>
          <exon e_start="76617" e_stop="76465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGATTGAAAATATTCTCAGCTCCATTAACTCCATTCCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAGGTATGTTTTTTTTTTCCTTACAAGTTAGTAGAAGGAATGCTTGAATTTTAGAATTTCAATCTTCTCGTATTTATATCGTTTTGGTTATATAGAATAATCACTCAAGAAATTCTAATATATATGTTTTATTTTTATTTTGAATTCATGCATCTTGTTGATGCAAAGAGAAACAATGAAAAAAAATGTTCATATGAAAATGGAAGGGAAGACTATAACAGGTTGACCTGCAATGCGCCTCTACTAAAATTGAGTTCTTTTTCAATTTTTTAATGAAACATTAGGTGACAGTATATTATTTTGATTTGCTTGTTATATTTTGGACTAACACTAATATTTAATTTACTTTAATATGGGATGTTCAGTTTAATAGATATGTATATATGACTGGTTATAGTGCATACCAGTTCGATCCCGATCTACTTGAACCATGGTATTAACTCAACAACTTACTCATAGTTCACGGGATATATTGAATGAAAGTGTTAGTATGATTTAAATACGAGGAGTTGTGATGGAAAATTTTGGGACCTCGTAAAGAAATATCACATTCATCCACGAGTCATAGAAATGATTGAATTATCAGGATTATATGGTGTTTATAGATCAAATCGACCTTCTATTGATCGTAGCTTGATCATTTCACTAGTAGAGAGATGGCGTCCCGAAACTCATACTTTCACTTTAGGACCGATGAGGCGAGAATCACCTGCAAGATGTAAAAGTGTTGTATGACTTACCTGTGAATGGTGATCCAGTACTTGGTGATGAGTCGATAAGGACCATAGGAGATTGACAAAATATTTTTCAAAGATTGTTAGGTTTGGGGGAATTAGTTTAAATAATGACTTAGTTTGGTCAAAAATTTCAAATTTTATTACTTCTAACCAACTATTTCTATGGAGATTTTCTTAAACTTAAAATCTCTCCATGACTCGTAATTTTTCTATTAAAAAATATAACAATTTAAGTTTTCGAAAAAATGCTTTGCCTTAGAATAAAATGTTCTTGACAATGTAGTATATATATTAAAATATGAATATTATCGAATGACCATATATAAGTTTAACAAAATAGTTCAATCAGCTGCGGAGCCACTATATGATGAACCTCTTTCGACGAAAAATTATATTATTTTTATATGATTAAAATAATTTTTTAAGCATATATGTTAGATGTCGAATCTCCTTCAACTACTTCATGTGTGTATTTCTTCCGATTTTGAACCTCTTGTCAAAAATTCTTGCTCCGCTTCTGAGTTCAATAGTAATTTACCTAGTTTAATTTTATAAAGAAACAAGTCTTTTTAGGCCGTTGCCGCTCAAGATCCTCTTTTCCCTCCATTTTTTCCTCATGAACTGACAGTACCAGTGACAATAATGTACTTTAATTCGTTTTCAGGGGCATTTGAGTAATTTACTAAAGCGAAACAATTTCCTCCTGTTTTCTTATTAAGCAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAGGTAACAATTTTAATTTTTTATTTTTTTTGCATGTTTTCATTTTGATGATAAATGTTATTTTAATTTTCTTATATTATGTTGGAGTGAAACAGAACGAGTTTAGGATTGAGGTTTGAGCATTAATTAGTTGTAAATTTAGTGATATATTTTTGATAATTTTTGTATGTGTTTGTTACTATCTGTTGCTTCATTTGCTTTAAATCTAAGTTTTTGCTGTCTTGTTTTCTAATAATCGTGTTCTCTACCTCACAAAGGTTGTGTGGTTAGGAACTAGTGGTCAATCAAAGTGGTTGAGAAATCTGAGTTCTCTGGTTCAAAACTCAGCGGAGACTAAAGCACTAGCCGATTTTTTCCCAATTTTCCTACCCTTGGTGGACAGAGTTAGCTGACACTTGTTCCTGGTGGCAGGTGGCACAAAAAGTTGGCCTAGACACCACGGTCACAAAAGAAAAGGATGAAATGTGGTAAGGTCTAAGTTGGGTTGGTGACAGGTATCTCGTGGAATTAGTCGATGTGCGCAAAAGTTGGTTCGAATGCCACGGTCATAAAAATAGGTAGTGTGGTAAAGTCTAAGTTGGGGCGGTGGTAGGTATCATGTGGAATTAGTCATGGCGCGTGAAAGTTGGTCCGAATACCACGATAAAAAAAAGAAGGTAGAGTGGTAAGGTCTAAGTTAGGGTGGAACCAAGTAGGGTTGAAGGGGTTTATTCAAATTTATACATGGTTAAAATTCTTTATTATGTATATATAGTAGATATTGAAATCCCTTTCAACTTCTTCATGTGTTTGCTTAATGAAAATTTTGGTTCTGCCACTTGGTCTAATGCAGTGGTAAGGTGTACATTCATTTAATCTTCCCAGTATCCACTTGTGAGATTGCAACGAGTATGTTATTGTTGTTGTTTCATTTGTTAACTTTCTAACCTCCCTAGACTCCACTTTTGTGATAGCACCGAGTATGTATTTGTTGTTGTTTCATTTGTTAACATTGTAATCTCCTTAGACTCCACTTGTGTGATTGCACCGAGTATGTTGTTATTGTTGTTTCATTTGTTAACATTGTAACCTCCCTAGACTCCACTTGTGAGTTTAACCCAAGTATGTTATTGTTGTTGTTTGTAACCTTCCTAGACTCCACTTGTGAGATTGAACCGAGTATGTTATTGTTGTTGTTTCATGTGTTAACATTGTAATCTCCGTAGACTCCACTTGTGTGATTGCACTGAGTATGTTATTGTTGTTGTTTCATTTGTTAACATCGTAAGCCTCCCCAGACCATAGTGAGATTGCAATGAGTATATTGTTGTTTTTGTTACGTTTGTAATGTTTTATTTTTGGGTTACAGAGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCAAAGAGATGATGGATTCTAAGGTGAACTCTATTGAACACTAGGCATTTGGCCATGAAATTTTTTTCACTAAGAGCACTAGTGTTCTTTGCTCAAATCAATATTGACCATGTTGCAAGCGTCTACCGATCTTAGTCCCACAATCAATTTGAAGCCGAAGCCAACTATATCTCAGACTTTTCAATACTACAACTAATCCTCGGAATATTGACACTTAAGTTATAAGCATCAGATAATGATTTTAGCTAACTAACACTCTATGTGCTCCAACTATCAAATATAATCTTATCTTTATTTCAAAATTACGTCTGGAAAATCTAACCTCTGTGAATTTTTTCCTTTCCATTTTGTTGTGAAGACGTGAAAACAAAGACGTCATTGACATGCAGCCAAAAGATATGGCTGTATGAGTGTCTCATTTTCCAACAAAGGTTCACATGTCCTCCAATGCAACTCCCATTTCCACTTGGTCATCCCACTTTAAGAGTTCTTAAGTACATCTTGAATAATTTCTTGCTACCATTCTCTGAGCAAGACATTTTTATCTTTTGTAGTTCTTGTTGTTTACTAAAGCACATCAATATTCGTCTCACAAATTCACTCTGATAAGTTCTAAATGGGGACTTGTTCAATTTTATTGCTTGATAATTTATTTATTTGAGAGGGAACCCAAATCTTCATACCTTTTGTAACTACCTGTTGAGGGTGTACCAGCATTTGAGCCTTTGTTGTCAACCTCATTGAAACCTCTTGAACAAAATACGTCCCTAACTTCTCACCCTTAAATCCTATTCTAAGCATTGGTTTGTTTGAATAGCAAACATAGGCCAAAAGCCTAAGTTGGTGTGTGTCACCACCCAAAGTATACCCTAGACGTGACATGACGTATAGCACCCCGTGAGGTTTATTATGACATCTTTATTGATTAATACACAAGAGTAGGTATACTTGCTATAACCCAAAGATTAGGTCCAAGGCCGAGATAAATCTGAGATGAACACATGAGGTAGATTTTGGGTTCATGTTTATTTTTGGAGTATAGTTGAAGTCGGGGTTAACACAGCAAGTTCATTGAGAGGCAGTCTTCTGTCTTGTCAAATAGTTTTTAAAGTGAGTAATTATTTAAAAGTGAGGTGAGTAGACGTTTTTAGATAAGCAACATGGTGACATGCTAAGGACCAAAAAGTGTCGAAGATGGTCAGCTCTCAATCTGAACTCAATGAATCCTACTTGGGTGTTTTGATTGATTCCTAATTCTTCCTCACGTAAAAATGTTCTTGCAGTTTCAATAATGTAACAATGCTAAGGCATATAGGATGGAGTAAAAAGATGTTCAAATTTTGGTATCGAAATGCTCTTCTATCAAAGGATGAAATTTTTTAAAAAGCTATTTGACTTCATTTTTACCTTTTTAGTGTAGAGCGAAGTGTTTGTGTATTGATCAACAAAGATGCAATAATACATTTTTTTATCAAGAGATAGAACAAGACAAATCACTTAAAATAATTTAACACGGTTTAGAGCTTTTTGTAGTCAGTTTATAAAATGGATGTTAATGAGCTTACATGTGAGCTTGTGGAGGTGAAATGGGCCACTCATGCAGTCCACTTTTGTTCCAGACGCATGCCAACGATGTCTGAGTTTTCAGATTTTTCACAACACAATGAAAAAGGAAAGCATCCAACAGACGTTTGATTATCCTGACGTAGTTTTGGAAACAGAGATAAAATATAATTTGATTCTTGTATGTCAGTAGAGACAATATGTAATATGCGTTTGTTACCATTGTGCATGTCGACATCCTTGTTGTCGTGATACGATTGTAAGTTGTGCGGCTCCGTTGCGATATGATGAGTGGCACCAGAGTCGTTTTAGCAAGGATTGGCAGTGGTATTGATCAGTAGACACTTGCAACATGGCCAATCTTGTTGCGTAGAAACATTGAGTAATGACGATAGTGTTATTGTTATTCGAGGACTGAAATAATGGATTTATCAAAAAATAATTAGATAAAACTGCGCCTTTTTTATTTCTATTTTTTAATAAGGCAAGATAAATGCCAGTTCTTCCCATTCTAATTTGGAAAAAAGGACAAATATACCTCTGAACTATCGTAAATGGTATGCAGATACAATCTGTCATATTTTTGAGACATTGGTGCCCTTGCCGTCCAAAATCTAAAGCATATATGCCCTTTACTTTAACGGAAGACTAAATAGGGACACGTGGCATAATCTTATATATTAATCCGATATTTAATAAATGTCGGGTCGATGGATTAGATGACACGTGTATGCCCCTTTGTATAAAACGTATATATGCACTAGTTTTTGGACGGCAGGGGCATCAATGTCCCAAAAGTATGATGGAGGTTTTATGCATACCATTTACAATAGTTCGGGGTATATTTGTCCTTTTTCCCTTCTAATATTACAAAGCTTCTTTGATTCTCAGTTACAACATAAACTTCTTTTATTCCCGATTCCCCTCTGGCCAATAATTTAGTAGATGTAACCAACTTTAACTTTTGTCATTTCTTTATATATCATTCACCTAGAAGACATCTTGCAAACATATTCTTTGCCAGTATCCACTATTTATATTTTTTCCATATCTTATTGACAGATTATTGAAGCAGAGTTAACATCGTTGAGTCAACAGAGGAAGATTGAAGAACTTGAATCTCAACTAGAGGAAGCAGAAGATATTGTAAGTGATCTCAGGGTTGAGTTGAGAGAAGTTCAAGCTGAACTTGAGAAAGTCGCCAGCAAAGAAAAA</genome_strand>
        <mrna_strand>ACCGATTGAAAATATTCTCAGCTCCATTAACTCCATTCCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCANAGAGATGATGGATTCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGAAGCAGAGTTAACATCGTTGAGTCAACAGAGGAAGATTGAAGAACTTGAATCTCAACTAGAGGAAGCAGAAGATATTGTAAGTGATCTCAGGGTTGAATTGAAAGAA-ATCAAGCTGAACTTGAAAAAGTCGCCAGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305293" ref_strand="+" ref_description="SGN-E305293 [cLEX-15-D7]">
      <seq>ccgattgaaaatattctcagctccattaactccattcccaaccgataatttgtggacgaagaggaggcgtgaaagaacaaaaaccacagaaaggcaatcaatgagtcaaaacctcatttcatagataaactgtagctttaatatttccaaatcaaatttggggatttcttgttatatcgagtttcgcgataaattgaagctataaatcttcggaaaagcttggaatcgagttaatttttctgtgttagagccttgagcaaaaaaaaaaccaccttcgcaaattttgctcttcacattttggtctggaaaacctcaaacgacagctttgtgcttagttcaaggaaacagcaatggatgccgacgagagattaaaagctttagaaaaggcatatacggatgtagtcttgaacacagagaaagaagcagcgacgaggattatggtgtcggaacagaaagctcaatgttttcaagaggagctccaagtggtgaaagaaaaggggctaatgacgctgatgaagctcaaagagatgatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82858" stop="78924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82558" g_stop="82303" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82302" i_stop="80850" i_length="1453">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80849" g_stop="80742" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="365" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80741" i_stop="79397" i_length="1345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79396" g_stop="79224" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="538" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E305293" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82558" e_stop="82303"/>
          <exon e_start="80849" e_stop="80742"/>
          <exon e_start="79396" e_stop="79224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTGAAAATATTCTCAGCTCCATTAACTCCATTCCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAA-CACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAGGTATGTTTTTTTTTTCCTTACAAGTTAGTAGAAGGAATGCTTGAATTTTAGAATTTCAATCTTCTCGTATTTATATCGTTTTGGTTATATAGAATAATCACTCAAGAAATTCTAATATATATGTTTTATTTTTATTTTGAATTCATGCATCTTGTTGATGCAAAGAGAAACAATGAAAAAAAATGTTCATATGAAAATGGAAGGGAAGACTATAACAGGTTGACCTGCAATGCGCCTCTACTAAAATTGAGTTCTTTTTCAATTTTTTAATGAAACATTAGGTGACAGTATATTATTTTGATTTGCTTGTTATATTTTGGACTAACACTAATATTTAATTTACTTTAATATGGGATGTTCAGTTTAATAGATATGTATATATGACTGGTTATAGTGCATACCAGTTCGATCCCGATCTACTTGAACCATGGTATTAACTCAACAACTTACTCATAGTTCACGGGATATATTGAATGAAAGTGTTAGTATGATTTAAATACGAGGAGTTGTGATGGAAAATTTTGGGACCTCGTAAAGAAATATCACATTCATCCACGAGTCATAGAAATGATTGAATTATCAGGATTATATGGTGTTTATAGATCAAATCGACCTTCTATTGATCGTAGCTTGATCATTTCACTAGTAGAGAGATGGCGTCCCGAAACTCATACTTTCACTTTAGGACCGATGAGGCGAGAATCACCTGCAAGATGTAAAAGTGTTGTATGACTTACCTGTGAATGGTGATCCAGTACTTGGTGATGAGTCGATAAGGACCATAGGAGATTGACAAAATATTTTTCAAAGATTGTTAGGTTTGGGGGAATTAGTTTAAATAATGACTTAGTTTGGTCAAAAATTTCAAATTTTATTACTTCTAACCAACTATTTCTATGGAGATTTTCTTAAACTTAAAATCTCTCCATGACTCGTAATTTTTCTATTAAAAAATATAACAATTTAAGTTTTCGAAAAAATGCTTTGCCTTAGAATAAAATGTTCTTGACAATGTAGTATATATATTAAAATATGAATATTATCGAATGACCATATATAAGTTTAACAAAATAGTTCAATCAGCTGCGGAGCCACTATATGATGAACCTCTTTCGACGAAAAATTATATTATTTTTATATGATTAAAATAATTTTTTAAGCATATATGTTAGATGTCGAATCTCCTTCAACTACTTCATGTGTGTATTTCTTCCGATTTTGAACCTCTTGTCAAAAATTCTTGCTCCGCTTCTGAGTTCAATAGTAATTTACCTAGTTTAATTTTATAAAGAAACAAGTCTTTTTAGGCCGTTGCCGCTCAAGATCCTCTTTTCCCTCCATTTTTTCCTCATGAACTGACAGTACCAGTGACAATAATGTACTTTAATTCGTTTTCAGGGGCATTTGAGTAATTTACTAAAGCGAAACAATTTCCTCCTGTTTTCTTATTAAGCAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAGGTAACAATTTTAATTTTTTATTTTTTTTGCATGTTTTCATTTTGATGATAAATGTTATTTTAATTTTCTTATATTATGTTGGAGTGAAACAGAACGAGTTTAGGATTGAGGTTTGAGCATTAATTAGTTGTAAATTTAGTGATATATTTTTGATAATTTTTGTATGTGTTTGTTACTATCTGTTGCTTCATTTGCTTTAAATCTAAGTTTTTGCTGTCTTGTTTTCTAATAATCGTGTTCTCTACCTCACAAAGGTTGTGTGGTTAGGAACTAGTGGTCAATCAAAGTGGTTGAGAAATCTGAGTTCTCTGGTTCAAAACTCAGCGGAGACTAAAGCACTAGCCGATTTTTTCCCAATTTTCCTACCCTTGGTGGACAGAGTTAGCTGACACTTGTTCCTGGTGGCAGGTGGCACAAAAAGTTGGCCTAGACACCACGGTCACAAAAGAAAAGGATGAAATGTGGTAAGGTCTAAGTTGGGTTGGTGACAGGTATCTCGTGGAATTAGTCGATGTGCGCAAAAGTTGGTTCGAATGCCACGGTCATAAAAATAGGTAGTGTGGTAAAGTCTAAGTTGGGGCGGTGGTAGGTATCATGTGGAATTAGTCATGGCGCGTGAAAGTTGGTCCGAATACCACGATAAAAAAAAGAAGGTAGAGTGGTAAGGTCTAAGTTAGGGTGGAACCAAGTAGGGTTGAAGGGGTTTATTCAAATTTATACATGGTTAAAATTCTTTATTATGTATATATAGTAGATATTGAAATCCCTTTCAACTTCTTCATGTGTTTGCTTAATGAAAATTTTGGTTCTGCCACTTGGTCTAATGCAGTGGTAAGGTGTACATTCATTTAATCTTCCCAGTATCCACTTGTGAGATTGCAACGAGTATGTTATTGTTGTTGTTTCATTTGTTAACTTTCTAACCTCCCTAGACTCCACTTTTGTGATAGCACCGAGTATGTATTTGTTGTTGTTTCATTTGTTAACATTGTAATCTCCTTAGACTCCACTTGTGTGATTGCACCGAGTATGTTGTTATTGTTGTTTCATTTGTTAACATTGTAACCTCCCTAGACTCCACTTGTGAGTTTAACCCAAGTATGTTATTGTTGTTGTTTGTAACCTTCCTAGACTCCACTTGTGAGATTGAACCGAGTATGTTATTGTTGTTGTTTCATGTGTTAACATTGTAATCTCCGTAGACTCCACTTGTGTGATTGCACTGAGTATGTTATTGTTGTTGTTTCATTTGTTAACATCGTAAGCCTCCCCAGACCATAGTGAGATTGCAATGAGTATATTGTTGTTTTTGTTACGTTTGTAATGTTTTATTTTTGGGTTACAGAGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCAAAGAGATGATGGATTC</genome_strand>
        <mrna_strand>CCGATTGAAAATATTCTCAGCTCCATTAACTCCATTCCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACCACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCAAAGAGATGATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207768" ref_strand="+" ref_description="SGN-E207768 [cLEC-32-K6]">
      <seq>ttcgggtttttcttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98745" stop="100291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99045" g_stop="99455" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="99991" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="511" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E207768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99045" e_stop="99455"/>
          <exon e_start="99892" e_stop="99991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGGTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGAC</genome_strand>
        <mrna_strand>TTCGGGTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704059" ref_strand="+" ref_description="SGN-E704059 [FA23BA03]">
      <seq>cgggtttttcttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98747" stop="101124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99047" g_stop="99455" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="618" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100824" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="878" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E704059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99047" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCT</genome_strand>
        <mrna_strand>CGGGTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590958" ref_strand="+" ref_description="SGN-E590958 [44565]">
      <seq>cttcctttcaatttcaatttcaataggtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggacaataagcaagaaatctcagttgtagcaccagcaacattaccaactaccaaaaaccattgcatttccggttggcaacaaactgttggttctatcatatttccagtacagattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98761" stop="101013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99050" g_stop="99455" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="608" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100639" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="683" r_length="75" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E590958" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99050" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCT</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAATTTCAATAGGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGACAATAAGCAAGAAATCTCAGTTGTAGCACCAGCAACATTACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590623" ref_strand="+" ref_description="SGN-E590623 [44223]">
      <seq>cttcctttcaatttcaatttcaatacgtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaactgatttttattgattcgtggaaacttccaggaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttcggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgttaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaagctcaaccgtcgccgccgtcgatctagcctctttgatatcaccagttgactcggtatcagtaatgccaatagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98761" stop="100887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99050" g_stop="99455" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="609" r_length="210" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100587" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="632" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E590623" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99050" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCA-GAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCA-CTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGA</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAATTTCAATACGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAACTGA--TTTTTATTGATTCGTGGAAACTTCCAGGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTCGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTTAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAAGCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCAGTTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306754" ref_strand="+" ref_description="SGN-E306754 [cLEY-19-L5]">
      <seq>tttttcttcctttcaatttcaataggtgtgtacggttgtcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaagatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaagattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtgaagactcgcacaccgacacaagttgcaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98751" stop="100318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99051" g_stop="99455" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100018" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="532" r_length="127" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E306754" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99051" e_stop="99455"/>
          <exon e_start="99892" e_stop="100018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCA</genome_strand>
        <mrna_strand>TTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTGTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAAGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAAGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTGAAGACTCGCACACCGACACAAGTTGCAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250383" ref_strand="+" ref_description="SGN-E250383 [cLEG-6-G4]">
      <seq>tttttcttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcacgatgaagggttaaatttgcgctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtcagagaggagttccgtggacagaggaagagcataagttattccttttacgattgcgaaaagttggaaaaggagactggagaggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98751" stop="100271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99051" g_stop="99455" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="99971" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="491" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E250383" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99051" e_stop="99455"/>
          <exon e_start="99892" e_stop="99971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAA-GGTT--A--TGC-CTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATC</genome_strand>
        <mrna_strand>TTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCACGATGAAGGGTTAAATTTGCGCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTCAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTACGATTGCGAAAAGTTGGAAAAGGAGACTGGAGAGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246138" ref_strand="+" ref_description="SGN-E246138 [cLEF-40-M6]">
      <seq>ttttcttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98752" stop="100331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99052" g_stop="99455" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100031" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="544" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E246138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99052" e_stop="99455"/>
          <exon e_start="99892" e_stop="100031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATAC</genome_strand>
        <mrna_strand>TTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253880" ref_strand="+" ref_description="SGN-E253880 [cLEG-28-A4]">
      <seq>ttcttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98754" stop="100331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99054" g_stop="99455" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100031" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="542" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E253880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99054" e_stop="99455"/>
          <exon e_start="99892" e_stop="100031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATAC</genome_strand>
        <mrna_strand>TTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731864" ref_strand="+" ref_description="SGN-E731864 [LA28BF04]">
      <seq>cttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgtttttcatgcctaatccatcaaatcgatcgaccttaccgccaaccacaatttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98756" stop="101146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99056" g_stop="99455" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="609" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100846" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="890" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E731864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99056" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACA</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTTCATGCCTAATCCATC-AAATCGATCGACCTTACCGCCAACCACAATTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728009" ref_strand="+" ref_description="SGN-E728009 [LA16BF10]">
      <seq>cttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttgggccctgtttctatgttttcaatgcctaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98756" stop="101106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99056" g_stop="99455" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="609" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100806" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="852" r_length="243" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E728009" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99056" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTT-GGTCCTGTTCCTATGTTTTCAATGCCTAATCC</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGGCCCTGTTTCTATGTTTTCAATGCCTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705000" ref_strand="+" ref_description="SGN-E705000 [FA25DE09]">
      <seq>cttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98756" stop="101100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99056" g_stop="99455" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="609" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100800" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="845" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E705000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99056" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCC</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731203" ref_strand="+" ref_description="SGN-E731203 [LA26BG09]">
      <seq>gaatcggcacgaggcttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98756" stop="101019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99056" g_stop="99455" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="414" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="623" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100719" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="778" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E731203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99056" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTC</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728017" ref_strand="+" ref_description="SGN-E728017 [LA16BG07]">
      <seq>cttcctttcaatttcagtaggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccaaaaagatgtcgagcgtttgcagagataagtcgacgtcgacgccggcggtaaccggcggcagatttggaggataaatcatgttgatttggttgtgagagtaatagtggatcctatgaggaagagcgagaatctgaacgatctttcacaggacgagcaaccgaatgctaacaacaacaactcacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggatatgcctctgcatatgacgcggatcaacatcattccaacagtggtcgcgagcgtaatagaggagttccgtggacagaggaagagcataagatattccttttatgattgcgaaaagttggaaaaggacactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcacaaatacttcctccggcgaaggaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgcctctagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98756" stop="100937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99056" g_stop="99455" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="612" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100638" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="686" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E728017" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99056" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTG-TTTGG-TGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAAC-AACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCC</genome_strand>
        <mrna_strand>CTTCCTTTCAATTTCAGTAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAAAAAGATGTCGAGCGTTTGCAGAGATAAGTCGACGTCGACGCCGGCGGTAACCGGCGGCAGATTTGGAGGATAAATCATGTTGATTTGGTTGTGAGAGTAATAGTGGATCCTATGAGGAAGAGCGAGAATCTGAACGATCTTTCACAGGACGAGCAACCGAATGCTAACAACAACAACTCACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGATATGCCTCTGCATATGACGCGGATCAACATCATTCCAACAGTGGTCGCGAGCGTAATAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGATATTCCTTTTATGATTGCGAAAAGTTGGAAAAGGACACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCACAAATACTTCCTCCGGCGAAGGAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCTCTAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211740" ref_strand="+" ref_description="SGN-E211740 [cLEC-66-M7]">
      <seq>ttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98757" stop="100409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99057" g_stop="99455" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="608" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E211740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99057" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG</genome_strand>
        <mrna_strand>TTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313959" ref_strand="+" ref_description="SGN-E313959 [cTOA-19-C10]">
      <seq>ttcctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggaaaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98757" stop="99683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99057" g_stop="99383" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E313959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99057" e_stop="99383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGC</genome_strand>
        <mrna_strand>TTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAAAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697373" ref_strand="+" ref_description="SGN-E697373 [FA02CE11]">
      <seq>ccgtttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgcggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggctttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgacgaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcatcgatgaaggttatgcctctgcagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98759" stop="99712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99058" g_stop="99412" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E697373" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99058" e_stop="99412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCA-GGATGAAGGTTATGCCTCTGCAGATGAC</genome_strand>
        <mrna_strand>CCGTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGCGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGCTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGACGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCATCGATGAAGGTTATGCCTCTGCAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697700" ref_strand="+" ref_description="SGN-E697700 [FA03DE04]">
      <seq>ctttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaacaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacaccggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98760" stop="100365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99060" g_stop="99455" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100065" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="570" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E697700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99060" e_stop="99455"/>
          <exon e_start="99892" e_stop="100065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCC</genome_strand>
        <mrna_strand>CTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAACAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACCGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463806" ref_strand="+" ref_description="SGN-E463806 [cPRO-16-E11]">
      <seq>cttctttcttcctttcaatttcaatttcaataggtgtgtacggtttccgtttgacggagtgtatgtttagtcatcgccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttgcagcgataagtcgtcatcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctanagtggctcaggatgaaggttatgcctctgcagatgacgctgnttcacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgtcaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgcccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98751" stop="100409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99455" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="406" r_length="388" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="616" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E463806" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCG-CCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG</genome_strand>
        <mrna_strand>TTTCAATTTCAATAGGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCGCCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTGCAGCGATAAGTCGTCATCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTANAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGNTTCACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTCAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562943" ref_strand="+" ref_description="SGN-E562943 [1660]">
      <seq>ctttcttcctttcaatttcaatttcaataggtgtgtacggtttccgtttgacggaagtgtatgtttagtcatcaccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtgggaccagaggaagagcatcacgttattccttttaggattgcagaaagtgggaacaaggagactggagaggaatctctcggtaacttcgtagagactcgcacacgactcagttgcaagtcatgctcagaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98753" stop="100330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99455" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="404" r_length="389" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100030" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="546" r_length="142" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E562943" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99455"/>
          <exon e_start="99892" e_stop="100030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGAC-GAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGT-GGA-CAGAGGAAGAGCAT-AAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAA-AAGGAGACTGGAGAGGAATCTCTC-GTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATA</genome_strand>
        <mrna_strand>TTTCAATTTCAATAGGTGTGTACGGTTTCCGTTTGACGGAAGTGTATGTTTAGTCATCACCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGGACCAGAGGAAGAGCATCACGTTATTCCTTTTAGGATTGCAGAAAGTGGGAACAAGGAGACTGGAGAGGAATCTCTCGGTAACTTCGTAGAGACTCGCACA-CGACTCA-GTTGCAAGTCATGCTCAGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463973" ref_strand="+" ref_description="SGN-E463973 [cPRO-16-F11]">
      <seq>cttctttcttcctttcaatttcaatttcaataggtgtgtacggtttccgtttgacggagtgtatgtttagtcatcgccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttgcagcgataagtcgtcatcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaagatgaagggtatgcctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98751" stop="99704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99404" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="355" r_length="337" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E463973" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTG</genome_strand>
        <mrna_strand>TTTCAATTTCAATAGGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCGCCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTGCAGCGATAAGTCGTCATCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAAGATGAAGGGTATGCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476061" ref_strand="+" ref_description="SGN-E476061 [cSTB-43-O7]">
      <seq>cttctttcttcctttcaatttcaatttcaataggtgtgtacggtttccgtttgacggagtgtatgtttagtcatcgccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttgcagcgataagtcgtcatcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98751" stop="99679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99379" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="330" r_length="312" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E476061" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTG</genome_strand>
        <mrna_strand>TTTCAATTTCAATAGGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCGCCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTGCAGCGATAAGTCGTCATCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291323" ref_strand="+" ref_description="SGN-E291323 [cLET-2-G10]">
      <seq>tttcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttctggaggctaaatcatgttgtttggtgtgagagccaacgtggatcctatgacgaagagcgtgagtctgaacgatctcttcacagtacgagcacccgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98761" stop="99625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99325" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E291323" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCT-TTCACAGTACGAGCAACCGAAT</genome_strand>
        <mrna_strand>TTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTCTGGAGGCTAAATCATGTTGTTTGGTGTGAGAGCCAACGTGGATCCTATGACGAAGAGCGTGAGTCTGAACGATCTCTTCACAGTACGAGCACCCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561501" ref_strand="+" ref_description="SGN-E561501 [16311]">
      <seq>ttcaatttcaatacgtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaactgatttttattgattcgtggaaacttccaggaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttcggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgttaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98762" stop="100356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99062" g_stop="99455" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100056" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="552" r_length="165" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E561501" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99062" e_stop="99455"/>
          <exon e_start="99892" e_stop="100056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCA-GAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACC</genome_strand>
        <mrna_strand>TTCAATTTCAATACGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAACTGA--TTTTTATTGATTCGTGGAAACTTCCAGGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTCGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTTAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378167" ref_strand="+" ref_description="SGN-E378167 [TUS-23-N23]">
      <seq>tcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaccacaattcaacaatcgangcatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98763" stop="101212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99063" g_stop="99455" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="602" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100912" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="949" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E378167" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99063" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACT</genome_strand>
        <mrna_strand>TCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCC-ACCACAATTCAACAATCGANGCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246848" ref_strand="+" ref_description="SGN-E246848 [cLEF-41-E12]">
      <seq>tcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtatgaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98763" stop="100389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99063" g_stop="99455" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100089" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="591" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E246848" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99063" e_stop="99455"/>
          <exon e_start="99892" e_stop="100089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCA</genome_strand>
        <mrna_strand>TCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATGAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368402" ref_strand="+" ref_description="SGN-E368402 [TUS-23-N23]">
      <seq>tcaatttcaataggtgtgtacggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaactatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98763" stop="100380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99063" g_stop="99455" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="582" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E368402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99063" e_stop="99455"/>
          <exon e_start="99892" e_stop="100080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCT</genome_strand>
        <mrna_strand>TCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACTATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576082" ref_strand="+" ref_description="SGN-E576082 [59243]">
      <seq>tttcaatacgtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaactgatttttattgattcgtggaaacttccaggaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttcggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgttaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaacgaggtggaaaataaacaagaaatcccagttctagcaccaggaacattaccaagtaccaaagacaatgcatttccgggggcaccagctgttggtcctatcatatttccagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98767" stop="101005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99067" g_stop="99455" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="591" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100705" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="724" r_length="133" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E576082" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99067" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCA-GAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAA-GAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTA</genome_strand>
        <mrna_strand>TTTCAATACGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAACTGA--TTTTTATTGATTCGTGGAAACTTCCAGGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTCGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTTAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAACGAGGTGGAAAATAAACAAGAAATCCCAGTTCTAGCACCAGGAACATTA---CC------AAGTACCAAAGACAATGCATTTCCGGGGGCACCAGCTGTTGGTCCTATCATATTTCCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584467" ref_strand="+" ref_description="SGN-E584467 [10294]">
      <seq>taggtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtatgcccaatagaagaggtggaaaataagcgagaaaatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98773" stop="100912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99073" g_stop="99455" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="585" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100612" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="634" r_length="49" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E584467" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99073" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAG-AAATCCCA</genome_strand>
        <mrna_strand>TAGGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTATGCCCAATAGAAGAGGTGGAAAATAAGCGAGAAAATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584472" ref_strand="+" ref_description="SGN-E584472 [10299]">
      <seq>taggtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaattgattttgtattgattcgtggaaacttccagaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98773" stop="99620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99073" g_stop="99320" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E584472" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99073" e_stop="99320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAAC</genome_strand>
        <mrna_strand>TAGGTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAATTGA-TTTTGTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581669" ref_strand="+" ref_description="SGN-E581669 [7296]">
      <seq>gtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaattgattgtggattgattcgtggaaacttccagaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctattaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggacaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98776" stop="100889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99076" g_stop="99455" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="582" r_length="209" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100589" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="607" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E581669" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99076" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGG</genome_strand>
        <mrna_strand>GTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAATTGA-TTGTGGATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---ATTAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGACAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476652" ref_strand="+" ref_description="SGN-E476652 [cSTB-45-F23]">
      <seq>cttctttcttcctttcaatttcaatttcaatacgtgtgtacggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaactgatttttattgattcgtggaaacttccaggaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagaggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttcggattgcagaaagtgggaaaaggagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98751" stop="100260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99076" g_stop="99455" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="406" r_length="373" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="99960" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="475" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E476652" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99076" e_stop="99455"/>
          <exon e_start="99892" e_stop="99960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCA-GAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACT</genome_strand>
        <mrna_strand>GTGTGTACGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAACTGA--TTTTTATTGATTCGTGGAAACTTCCAGGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGAGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTCGGATTGCAGAAAGTGGGAAAAGGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730228" ref_strand="+" ref_description="SGN-E730228 [LA23BH12]">
      <seq>acggttttcaattgacgaagtgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98782" stop="101148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99082" g_stop="99455" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="583" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100848" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="866" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E730228" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99082" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAAT</genome_strand>
        <mrna_strand>ACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTC-ATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450422" ref_strand="+" ref_description="SGN-E450422 [cSTS-9-E24]">
      <seq>cggtttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaattgattttttattgattcggggaaacttccaaaacgatgtcgagcgtttacagcgataagtcgtcgtcaacgccggcagttaccggcggcggttttggaggaaaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacgggggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaaaagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagtgggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98783" stop="100254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99083" g_stop="99455" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="99954" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="429" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E450422" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99083" e_stop="99455"/>
          <exon e_start="99892" e_stop="99954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAG</genome_strand>
        <mrna_strand>CGGTTTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAATTGA-TTTTTTATTGATTCGGGGAAACTTCCAAAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCAACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAAAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAAC-G-GG-GGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTGGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450405" ref_strand="+" ref_description="SGN-E450405 [cSTS-9-C14]">
      <seq>ttccgtttgacggagtgtatgtttagtcatcaccactttgtatcaactgatttttattgattcgtggaaacttccaggaacgatgtcgagcgtttacagcgataagtcgtcgtcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttcggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgttaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98788" stop="100400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99087" g_stop="99455" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="571" r_length="209" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E450405" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99087" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCA-GAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG</genome_strand>
        <mrna_strand>TTCCGTTTGACGGAGTGTATGTTTAGTCATCACCACTTTGTATCAACTGA--TTTTTATTGATTCGTGGAAACTTCCAGGAACGATGTCGAGCGTTTACAGCGATAAGTCGTCGTCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTCGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTTAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473523" ref_strand="+" ref_description="SGN-E473523 [cSTB-32-N3]">
      <seq>gtttgacggagtgtatgtttagtcatcgccactttgtatcaattgattttttattgattcgtggaaacttccagaacgatgtcgagcgtttgcagcgataagtcgtcatcgacgccggcagttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgtcaagactcgcacaccgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98793" stop="100303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99091" g_stop="99455" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100003" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="470" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E473523" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99091" e_stop="99455"/>
          <exon e_start="99892" e_stop="100003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGAC</genome_strand>
        <mrna_strand>GTTTGACGGAGTGTATGTTTAGTCATCGCCACTTTGTATCAATTGA-TTTTTTATTGATTCGTGGAAACTTCCAGAACGATGTCGAGCGTTTGCAGCGATAAGTCGTCATCGACGCCGGCAGTTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTCAAGACTCGCACACCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698939" ref_strand="+" ref_description="SGN-E698939 [FA08AC07]">
      <seq>cgtatgtttagtcatcaacactttgtataaattgatttttttattgattcgtggaatcttccagaaagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcacccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcacccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgaccttgatcatgcgaattcatcgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98803" stop="101070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99102" g_stop="99455" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="564" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100770" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="772" r_length="208" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E698939" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99102" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCA-CCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCA-CCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGA-CATGATCATGCGAATTCATCGATGCT</genome_strand>
        <mrna_strand>CGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACCTTGATCATGCGAATTCATCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709928" ref_strand="+" ref_description="SGN-E709928 [FA53CF12]">
      <seq>cgttatagatgtcgagcgtttgcagtgataagtcgtcgtcgacgccggcggtaaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaatttcacaatcgagccatcgtcgttgtcactgagattatcattgtcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98866" stop="101191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99166" g_stop="99455" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="294" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="503" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100891" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="830" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E709928" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99166" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGAT</genome_strand>
        <mrna_strand>ATAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTTCACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584469" ref_strand="+" ref_description="SGN-E584469 [10296]">
      <seq>ttaccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttgtagcaccagcaacattaccaactaccaaaaccaatgcatttccggtggcaaccaactgttgggtcctatcatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98912" stop="100985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99213" g_stop="99455" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="446" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100700" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="575" r_length="129" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E584469" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99213" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGC-ACCGGCTGTT-GCTCCTATCATATTTC</genome_strand>
        <mrna_strand>TTACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTGTAGCACCAGCAACATTA---CC------AACTACCAAAACCAATGCATTTCCGGTGGCAACCAACTGTTGGGTCCTATCATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573632" ref_strand="+" ref_description="SGN-E573632 [32973]">
      <seq>ccggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcatccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagcaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggacaataagcaagaaatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98916" stop="100912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99216" g_stop="99455" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="444" r_length="210" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100612" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="492" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E573632" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99216" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAG-AGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCA</genome_strand>
        <mrna_strand>CCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCATCCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGCAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGACAATAAGCAAGAAATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317204" ref_strand="+" ref_description="SGN-E317204 [cTOA-28-A10]">
      <seq>ggcggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctggtccctatgttttcatgcctaatccatcaaaatcgatcgaccttaacgccaaccacattcaacaatcgagccatcgtcgttgtcactgagattatcattgtcacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98918" stop="101190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99218" g_stop="99455" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="447" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100890" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="772" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E317204" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99218" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCT-GTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGA</genome_strand>
        <mrna_strand>GGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGGTCCCTATGTTTTC-ATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCAC-ATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561790" ref_strand="+" ref_description="SGN-E561790 [19208]">
      <seq>tggatccccgggctgcaggcggttttggaggagaaatcatgttgtttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttgtagcaccagcaacattaccaaataccaaaagcaatgcatttccggtggcaccaactgttggtcctatcatatttccagtacagattgacaagtcaagagagtatccaactctgttgcgacatgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98917" stop="101053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99221" g_stop="99455" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="246" r_length="229" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="455" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100753" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="635" r_length="180" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E561790" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99221" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCAT</genome_strand>
        <mrna_strand>GGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTGTAGCACCAGCAACATTA---CC-----AAA-TACCAAAAGCAATGCATTTCCGGTGGCACCAACTGTTGGTCCTATCATATTTCCAGTACAGATTGACAAGTCAAGAGAGTATCCAACTCTGTTGCGACATGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265388" ref_strand="+" ref_description="SGN-E265388 [cLEI-9-K9]">
      <seq>tttggtgtgagagtaaaagtggatcctatgaggaagagcgtgagtctgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98948" stop="100970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99248" g_stop="99455" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="417" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100670" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="523" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E265388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99248" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGG</genome_strand>
        <mrna_strand>TTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591848" ref_strand="+" ref_description="SGN-E591848 [45569]">
      <seq>gtctaaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacggcggtgataacaatgaatcctctaaagtggctcaggatgaaggttatgcctctgcagatgacgctgttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttcggattgcagaaagtgggaaaaggagactggagaggaatctctcgtaacttcgttaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataaacaagaaatcccagttctagcaccagcaacattaccaactaccaaaaccaatgcatttccgggggcaccagctgttggtcctatcatatttccagtacaaattgacaagtcaagagagaatccaactctgttgcgacatgatcatgggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaagtcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcnggcatataacgttgatgcccaagttttcagtaattggagaaaagcatcatccgtgtgggcatgagatcaaaggatctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98991" stop="101300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99291" g_stop="99455" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="368" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="101000" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="798" r_length="430" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E591848" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99291" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="101000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTC-GGCATATAATG-TGATG-TCAAG-TTTCAGTAA-TGGAG-AAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGA</genome_strand>
        <mrna_strand>GTCTAAACGATCTTTCACAGTACGAGCAACCGAATGCT---AACAACAACAACAA---CGGCGGTGATAACAATGAATCCTCTAAAGTGGCTCAGGATGAAGGTTATGCCTCTGCAGATGACGCTGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTCGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTTAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAACAAGAAATCCCAGTTCTAGCACCAGCAACATTA---CC------AACTACCAAAACCAATGCATTTCCGGGGGCACCAGCTGTTGGTCCTATCATATTTCCAGTACAAATTGACAAGTCAAGAGAGAATCCAACTCTGTTGCGACATGATCATGGGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAAGTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCNGGCATATAACGTTGATGCCCAAGTTTTCAGTAATTGGAGAAAAGCATCATCCGTGTGG---GCATGAGATCAAAGGATCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277016" ref_strand="+" ref_description="SGN-E277016 [cLEN-22-N18]">
      <seq>tgaacgatctttcacagtacgagcaaccgaatgctaacaacaacaacaacaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggttatgcctctgcagatgacgcggttcaacatcagtccaacagtggtcgcgagcgtaagagaggagttccgtggacagaggaagagcataagttattccttttaggattgcaaaaagttggaaaaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98994" stop="101104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99294" g_stop="99455" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="100100" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="371" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100565" g_stop="100804" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="611" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E277016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99294" e_stop="99455"/>
          <exon e_start="99892" e_stop="100100"/>
          <exon e_start="100565" e_stop="100804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAAT</genome_strand>
        <mrna_strand>TGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265256" ref_strand="+" ref_description="SGN-E265256 [cLEI-9-K11]">
      <seq>acaacggcggcggtgataacaatgaatcctctaaagtggcgcaggatgaaggtatgcctctgcgatgacgcggttcaacatcagtccaacagtggtcgaagcgtaataaggagttccgtggacagaggaagagcataattattccttttaggattgcaaagttggaaaaggagactggagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99042" stop="100269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99342" g_stop="99455" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99892" g_stop="99969" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="185" r_length="75" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E265256" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99342" e_stop="99455"/>
          <exon e_start="99892" e_stop="99969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAGGTGAGATCTCCTGTCCTCTTCTTCTATTTTTTGTTGCTAATCGGCGTGTTTTTATGATCGTCTTCATTTTTCATTCGATTCGGTTATTTCTGTCAGTGCTTAGTCAATTAATGTCTACTCTGAGTGAAGTTTCTATTAGATTCATCGATCGTTTTCTCTGTTATGCACAAATTTTTGAGTTATACTCTTCTATCCTAATTTGTGTTGCACAGAGTCAAATTGATAGTTTTATCACGTGATTTATATGTAATTGTTTGAAATTAATTCCAAAAATGATGGCCGAATTTGTAGAATTTTTTTTGGATTCTGTAGAAGGGAACTCGTTTCCCTCTGTCTAGATTTCAGGACCATAAATATGGTTTTGATCTAACCTGCTTAGCTTTGAATCCATAAAAATTGATTTCTGATGAAGTAGGGTTGATTTTGTTTGTATTAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAA</genome_strand>
        <mrna_strand>ACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGG-TATGCCTCTGC-GATGACGCGGTTCAACATCAGTCCAACAGTGGTCG-AAGCGTAATA-AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGTGGACAGAGGAAGAGCATAA-TTATTCCTTTTAGGATTGC--AAAGTTGGAAAAGGAGACTGGAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589486" ref_strand="-" ref_description="SGN-E589486 [43062]">
      <seq>aaagagcataagttatccttttcggattgcagaaaatggggaaaaggagactggagaggaatctctcgtaacttcgttaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataaacaagaaatcccagttctagcaccagcaacattaccaactaccaaaaccaatgcatttccgggggcaccagctgttggtcctatcatatttccagtacaaattgacaagtcaagagagaatccaactctgttgcgacatgatcatgggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgccaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaagaagatgaaaatactaggacaagagtgagtaagctcggttcataattatattaatcttatatattgaggaaaagtttatgatatccatgtgatgtgattagttgactagacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtgtacctatttaatgctaagggaaagtagttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99648" stop="101491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99909" g_stop="100100" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101174" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="779" r_length="587" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E589486" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99909" e_stop="100100"/>
          <exon e_start="100565" e_stop="101174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGCATAAGTTATTCCTTTTAGGATTGCA-AAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTG</genome_strand>
        <mrna_strand>AAAGAGCATAAGTTA-TCCTTTTCGGATTGCAGAAAATGGGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTTAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAACAAGAAATCCCAGTTCTAGCACCAGCAACATTA---CC------AACTACCAAAACCAATGCATTTCCGGGGGCACCAGCTGTTGGTCCTATCATATTTCCAGTACAAATTGACAAGTCAAGAGAGAATCCAACTCTGTTGCGACATGATCATGGGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGCCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCT--TG--AG-AAAAAAAGAAGATGAAAATACTAGGAC-AAGAGTGAGTAAGCTCGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATG--A-TATCCAT-GTGATGTGATTAGTTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617746" ref_strand="+" ref_description="SGN-E617746 [66599]">
      <seq>aaggagactggagaggaatctctcgtaacttcgtaaagactcgcacaccgactcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttgtagcaccagcaacattaccaactaccaaaaccaatgcatttccggtggcaccaactgttggtcctatcatatttccagtacagattgacaagtcaagagagtatccaactctgttgcgacatgatcatgggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaagaagaagaaaaaactaggacaagagtgagtaagctgggttcataatttatatataatcttatatattgaggaaaagtttatgatatccatgtggtgattaatggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99652" stop="101396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99952" g_stop="100100" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101093" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="661" r_length="512" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E617746" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99952" e_stop="100100"/>
          <exon e_start="100565" e_stop="101093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAA-TTATAT-TAATCTTATATATTGAGGAAAAGTTTAT</genome_strand>
        <mrna_strand>AAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACTCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTGTAGCACCAGCAACATTA---CC------AACTACCAAAACCAATGCATTTCCGGTGGCACCAACTGTTGGTCCTATCATATTTCCAGTACAGATTGACAAGTCAAGAGAGTATCCAACTCTGTTGCGACATGATCATGGGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCT--TG--AG-AAAAAAAGAAGAAGAAAAAACTAGGAC-AAGAGTGAGTAAGCTGGGTTCATAATTTATATATAATCTTATATATTGAGGAAAAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551701" ref_strand="+" ref_description="SGN-E551701 [cTSB-1-J10]">
      <seq>atctctcgtaacttcgtaaagactcgcacaccgacacaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgagccatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagagagatcaaaggatctctggagaaagaaaaaaaagaagaagaaaaaactaggacaaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgtaaggagatatccatatgtgattaattgactagacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtacctatttaatgctactcttatttataacatcaaaatccctactactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99669" stop="101526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99969" g_stop="100100" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101226" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="794" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E551701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99969" e_stop="100100"/>
          <exon e_start="100565" e_stop="101226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCTACTACTAAA</genome_strand>
        <mrna_strand>ATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCTACTACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591495" ref_strand="-" ref_description="SGN-E591495 [45208]">
      <seq>tcaggttgcaagtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataaacaagaaatcccagttctagcaccagcaacattaccaactacccaaaccaatgcatttccgggggcaccagctgttggtcctatcatatttccagtacaaattgacaagtcaagagagaatccaactctgttgcgacatgatcatgggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgccaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaagaagatgaaaatactaggacaagagtgagtaagctcggttcataattatattaatcttatatattgaggaaaagtttatgatatccatgtgatgtgattagttgactagacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtgtacctatttaatgctaagggaaagtagttttccattgaaaatcacaatgaagatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99705" stop="101491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100004" g_stop="100100" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101174" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="684" r_length="587" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E591495" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100004" e_stop="100100"/>
          <exon e_start="100565" e_stop="101174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTG</genome_strand>
        <mrna_strand>TCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAACAAGAAATCCCAGTTCTAGCACCAGCAACATTA---CC------AACTACCCAAACCAATGCATTTCCGGGGGCACCAGCTGTTGGTCCTATCATATTTCCAGTACAAATTGACAAGTCAAGAGAGAATCCAACTCTGTTGCGACATGATCATGGGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGCCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCT--TG--AG-AAAAAAAGAAGATGAAAATACTAGGAC-AAGAGTGAGTAAGCTCGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATG--A-TATCCAT-GTGATGTGATTAGTTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368401" ref_strand="+" ref_description="SGN-E368401 [TUS-23-N23](-)">
      <seq>agtcatgctcagaaatacttcctccggcgaagcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgagccatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagagagatcaaaggatctctggagaaagaaaaaaaagaagaagaaaaaactaggacaaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgtaaggagatatccatatgtgattaattgactagacttttggtcctgatttgtacagaccagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99714" stop="101460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100014" g_stop="100100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101166" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="689" r_length="602" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E368401" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100014" e_stop="100100"/>
          <exon e_start="100565" e_stop="101166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCAT</genome_strand>
        <mrna_strand>AGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696933" ref_strand="+" ref_description="SGN-E696933 [LH_Ea10G19](-)">
      <seq>gcaacctcaaccgtcgccgccgtcgatctagcctctttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacagcaacattacctactgtagaaactaccaaaaccaatgcatttccggtggcaccggctgttgctcctatcatatttccagtacaggttaacaagtcaagagagaatccaactctgtttcgacatgatcatgggaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcgaaagcgattgaccttaacgccaaccacaactcaacaatcgagccttcgtcgtggtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtggggtcaagtttcagtaatggagaaagcatcatccgttagagggagagagatcaaaggatctctgagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99745" stop="101325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100045" g_stop="100100" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101021" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="517" r_length="461" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E696933" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100045" e_stop="100100"/>
          <exon e_start="100565" e_stop="101021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGC-A-A-CA---TTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGA</genome_strand>
        <mrna_strand>GCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACAGCAACATTACCTACTGTAGAAACTACCAAAACCAATGCATTTCCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAACAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGGGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCGAAAGCGATTGACCTTAACGCCAACCACAACTCAACAATCGAGCCTTCGTCGTGGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGGGGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGT-TAGAGGGAGAGAGATCAAAGGATCTCT-GAGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693093" ref_strand="+" ref_description="SGN-E693093 [LH_Ea10G19]">
      <seq>ttaacctcaaccgtcgccgccgtcgatctagcctctttcatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacagcaacattacctactgtagaaactaccaaaaccaatgcatttccggtggcaccggctgttgctcctatcatatttccagtacaggttaacaagtcaagagagaatccaactctgtttcgacatgatcatgggaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcgaaagcgattgaccttaacgccaaccacaactcaacaatcgagccttcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagagagatcaaaggatctctggagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99747" stop="101316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100045" g_stop="100100" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101014" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="512" r_length="456" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E693093" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100045" e_stop="100100"/>
          <exon e_start="100565" e_stop="101014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACA------TTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAG</genome_strand>
        <mrna_strand>TTAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTCATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACAGCAACATTACCTACTGTAGAAACTACCAAAACCAATGCATTTCCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAACAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGGGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCGAAAGCGATTGACCTTAACGCCAACCACAACTCAACAATCGAGCCTTCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551804" ref_strand="+" ref_description="SGN-E551804 [cTSB-1-O14]">
      <seq>gtcgatctagcctctttgatatcaccactgactcggtattcattttttattcatgtcttccatttatcaaacttgtttctcacccttattattaatcgagtgaaatctaacaatttctttgaattactacaattatatttctctcattttgccatttattggtgaatttcctttgagtaggtggtaagtgattgtgtatagagagagaaaattagatggtttgattttaatacttcgatcttatcactctttaacagaaggagtagtaatgtgattctttcattgttcttgttttgaattgatattgatgctgggtttttgttgttattcttttgtgtcttttctctaatagattctttttcattggtgtcaagttctttgtttatacttgccttctggaaaagatagaaatattgaattctgatgaatacaaactgccacttggatattttgtttttcagattttccatttctaaggttctctttctatgacaagcaggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccaagaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgaaccatcgtcgttgtcactgagattatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99766" stop="101182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100066" g_stop="100882" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E551804" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100066" e_stop="100882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTG</genome_strand>
        <mrna_strand>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAAGAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAACCATCGTCGTTGTCACTGAGATTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556389" ref_strand="+" ref_description="SGN-E556389 [cTSD-3-F16]">
      <seq>gtcgatctagcctctttgatatcaccactgactcggtattcattttttattcatgtcttccatttatcaaacttgtttctcacccttattattaatcgagtgaaatctaacaatttctttgaattactacaattatatttctctcattttgccatttattggtgaatttcctttgagtaggtggtaagtgattgtgtatagagagagaaaattagatggtttgattttaatacttcgatcttatcactctttaacagaaggagtagtaatgtgattctttcattgttcttgttttgaattgatattgatgctgggtttttgttgttattcttttgtgtcttttctctaatagattctttttcattggtgtcaagttctttgtttatacttgccttctggaaaagatagaaatattgaattctgatgaatacaaactgccacttggatattttgtttttcagattttccatttctaaggttctctttctatgacaagcaggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcaatgctagttggtcctgttcctatgttttcaatgcctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99766" stop="101105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100066" g_stop="100805" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E556389" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100066" e_stop="100805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATC</genome_strand>
        <mrna_strand>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCAATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392259" ref_strand="+" ref_description="SGN-E392259 [TUS-36-M22]">
      <seq>ctttgatatcaccactgactcggtattcattttttattcatgtcttccatttatcaaacttgtttctcacccttattattaatcgagtgaaatctaacaatttctttgaattactacaattatatttctctcattttgccatttattggtgaatttcctttgagtaggtggtaagtgattgtgtatagagagagaaaattagatggtttgattttaatacttcgatcttatcactctttaacagaaggagtagtaatgtgattctttcattgttcttgttttgaattgatattgatgctgggtttttgttgttattcttttgtgtcttttctctaatagattctttttcattggtgtcaagttctttgtttatacttgccttctggaaaagatagaaatattgaattctgatgaatacaaactgccacttggatattttgtttttcagattttccatttctaaggttctctttctatgacaagcaggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99779" stop="101061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100079" g_stop="100761" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E392259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100079" e_stop="100761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTC</genome_strand>
        <mrna_strand>CTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236527" ref_strand="+" ref_description="SGN-E236527 [cLED-13-K5]">
      <seq>tttgatatcaccactgactcggtattcattttttattcatgtcttccatttatcaaacttgtttctcacccttattattaatcgagtgaaatctaacaatttctttgaattactacaattatatttctctcattttgccatttattggtgaatttcctttgagtaggtggtaagtgattgtgtatagagagagaaaattagatggtttgattttaatacttcgatcttatcactctttaacagaaggagtagtaatgtgattctttcattgttcttgttttgaattgatattgatgctgggtttttggtggtattcttttggggtcttttctctaatagattctttttcattggtgtcaagttctttgtttatacttgccttctggaaaagatagaaatattgaattctgatgaatacaaactgccacttggatattttgttttcagattttccatttctaaggttctctttctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99780" stop="100858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100080" g_stop="100558" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E236527" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100080" e_stop="100558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTT-GTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGAC</genome_strand>
        <mrna_strand>TTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGGTGGTATTCTTTTGGGGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTG-TTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240851" ref_strand="+" ref_description="SGN-E240851 [cLED-24-F18]">
      <seq>tttgatatcaccactgactcggtattcattttttattcatgtcttccatttatcaaacttgtttctcacccttattattaatcgagtgaaatctaacaatttctttgaattactacaattatatttctctcattttgccatttattggtgaatttcctttgagtaggtggtaagtgattgtgtatagagagagaaaattagatggtttgattttaatacttcgatcttatcactctttaacagaaggagtagtaatgtgattctttcattgttcttgttttgaattgatattgatgctgggtttttgttgttattcttttgtgtcttttctctaatagattctttttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99780" stop="100731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100080" g_stop="100431" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E240851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100080" e_stop="100431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTG</genome_strand>
        <mrna_strand>TTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269158" ref_strand="-" ref_description="SGN-E269158 [cLEI-16-G16]">
      <seq>ttgatatcaccactgactcggtatcagtaatgccaatagaagaggtggaaaataagctagaaatcccagttccagcaccagcaacattacctcgtgtagaaactaccaaaaccaatgcattttcggtggcaccggatgttgctcctatcatatttccaggacaggttaataagtcaagagagaatccaactttgtttggacatgatcatgcgaattcatcgatgctagttggtcctgttcttatgttttcaatgcctaatccatcaaaatcgatggactttaacgccaaccacaattcaactatcgagccatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtgatgtcaagtttcagcaatggagaaagcatcatccgtgtggcatgagacagatcaaaggatctttggagaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99781" stop="101316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100081" g_stop="100100" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100565" g_stop="101016" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="472" r_length="452" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E269158" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269158" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100081" e_stop="100100"/>
          <exon e_start="100565" e_stop="101016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAA</genome_strand>
        <mrna_strand>TTGATATCACCACTGACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCTAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCGTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGATGTTGCTCCTATCATATTTCCAGGACAGGTTAATAAGTCAAGAGAGAATCCAACTTTGTTTGGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCTTATGTTTTCAATGCCTAATCCATCAAAATCGATGGACTTTAACGCCAACCACAATTCAACTATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGCAATGGAGAAAGCATCATCCGTGTGGCATGAGACAGATCAAAGGATCTTTGGAGAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392495" ref_strand="+" ref_description="SGN-E392495 [TUS-36-M22](-)">
      <seq>gaaaagatagaaatattgaattctgatgaatacaaactgccacttggatattttgtttttcagattttccatttctaaggttctctttctatgacaagcaggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgagccatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatttactagacactcggcatataatgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagagagatcaaaggatctctggagaaagaaaaaaaagaagaagaaaaaactaggacaaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgtaaggagatatccatatgtgattaattgactagacttttggtcctgatttgtacagaccagaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100164" stop="101460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100464" g_stop="101159" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="715"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E392495" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100464" e_stop="101159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAAT</genome_strand>
        <mrna_strand>GAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATTTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556560" ref_strand="+" ref_description="SGN-E556560 [cTSD-3-N7]">
      <seq>ggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgagccatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagagagatcaaaggatctctggagaaagaaaaaaaagaagaagaaaaaactaggacaaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgtaaggagatatccatatgtgattaattgactagacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtacctatttaatgctactcttatttataacatcaaaatccctactactaaagtagttttccatggaaaaaaaaaaaaaaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100264" stop="101558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100564" g_stop="101249" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="708"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E556560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100564" e_stop="101249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCTACTACTAAAGTAGTTTTCCATGGAAAAACACA</genome_strand>
        <mrna_strand>GGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCTACTACTAAAGTAGTTTTCCATGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432323" ref_strand="-" ref_description="SGN-E432323 [STM-56-J24]">
      <seq>gtatcagtaatgccaatagaagaggtggaaaataaacaagaaatcccagttctagcaccagcaacattaccaactaccaaaaccaatgcatttccgggggcaccagctgttggtcctatcatatttccagtacaaattgacaagtcaagagagaatccaactctgttgcgacatgatcatgggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgccaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaagaagatgaaaatactaggacaagagtgagtaagctcggttcataattatattaatcttatatattgaggaaaagtttatgatatccatgtgatgtgattagttgactagacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtgtacctatttaatgctaagggaaagtagttttccattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100265" stop="101491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100565" g_stop="101174" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="647"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E432323" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100565" e_stop="101174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTG</genome_strand>
        <mrna_strand>GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAACAAGAAATCCCAGTTCTAGCACCAGCAACATTA---CC------AACTACCAAAACCAATGCATTTCCGGGGGCACCAGCTGTTGGTCCTATCATATTTCCAGTACAAATTGACAAGTCAAGAGAGAATCCAACTCTGTTGCGACATGATCATGGGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGCCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCT--TG--AG-AAAAAAAGAAGATGAAAATACTAGGAC-AAGAGTGAGTAAGCTCGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATG--A-TATCCAT-GTGATGTGATTAGTTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576816" ref_strand="+" ref_description="SGN-E576816 [60093]">
      <seq>ctgactcggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttgtagcaccagcaacattaccaactaccaaaaccaatgcatttccggtggcaccaactgttggtcctatcatatttccagtacagattgacaagtcaagagagtatccaactctgttgcgacatgatcatgggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100264" stop="101313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100565" g_stop="101012" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="443" r_length="435" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E576816" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100565" e_stop="101012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAA</genome_strand>
        <mrna_strand>GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTGTAGCACCAGCAACATTA---CC------AACTACCAAAACCAATGCATTTCCGGTGGCACCAACTGTTGGTCCTATCATATTTCCAGTACAGATTGACAAGTCAAGAGAGTATCCAACTCTGTTGCGACATGATCATGGGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCTTGAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241791" ref_strand="+" ref_description="SGN-E241791 [cLEE-10-M23]">
      <seq>gagaatccatctctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgagccatcgtcgttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataatgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagagagatcaaaggatctctggagaaagaaaaaaaagaagaagaaaaaactaggacaaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgtaaggagatatccatatgtgattaattgactagacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtacctatttaatgctactcttatttataacatcaaanaataaaataaaaaaaaaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100424" stop="101511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100724" g_stop="101211" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="515"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E241791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100724" e_stop="101211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAA</genome_strand>
        <mrna_strand>GAGAATCCATCTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611363" ref_strand="+" ref_description="SGN-E611363 [61114]">
      <seq>ggaattcaccgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaacagcaattgaccttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100456" stop="101313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="101013" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E611363" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="101013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAA</genome_strand>
        <mrna_strand>GGAATTCACCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAACAGCAATTGACCTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCTTGAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308760" ref_strand="+" ref_description="SGN-E308760 [cLEZ-11-I10]">
      <seq>gtttttacaacccatacactaagattcaagaaaatcataattgctgcctaacacatgcacccaatcaggatttggataatgttatcacatggtcagctcatacaaccacccacatacatatctataggaccactcttcatcaaagatggtatcttcattgtgtttttccatggaaaactactttagtagtagggattttgatgttataaataagagtagcattaaataggtaccacaaagcatgacatatttctggtctgtacaaatcaggaccaaaagtctagtcaattaatcacatatggatatctccttacataaacttttcctcaatatataagattaatataattatgaacccagcttactcactctttgtcctagttttttcttcttcttatttttctttctccaaagatcctttgatctctctcatgccacacggatgatgctttctccattactgaaacttgacatcacattatatgccgagtgtctagtagatgatgcttgtccctgatcaagtgacaatgataatctcagtgacaacgacgatggctcgattgttgaattgtggttggcgttaaggtcgatcgattttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101707" stop="100504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101407" g_stop="100804" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E308760" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101407" e_stop="100804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTACAACCCATACACTAGGATTCAAGAAAATCATAATTGCTGCCTAACACATGCACCCAATCAGGATTTGGATAATGTTATCACATGGTCAGCTCATACAACCACCCACATACATATCTATAGGACCACTCTTCATCAAAGATGGTATCTTCATTGTGTTTTTCCATGGAAAACTACTTTAGTAGTAGGGATTTTGATGTTATAAATAAGAGTAGCATTAAATAGGTACCACAAAGCATGACATATTTCTGGTCTGTACAAATCAGGACCAAAAGTCTAGTCAATTAATCACATATGGATATCTCCTTACATAAACTTTTCCTCAATATATAAGATTAATATAATTATGAACCCAGCTTACTCACTCTTTGTCCTAGTTTTTTCTTCTTCTTTTTTTTCTTTCTCCAGAGATCCTTTGATCTCTCTCATGCCACACGGATGATGCTTTCTCCATTACTGAAACTTGACATCACATTATATGCCGAGTGTCTAGTAGATGATGCTTGTCCCTGATCAAGTGACAATGATAATCTCAGTGACAACGACGATGGCTCGATTGTTGAATTGTGGTTGGCGTTAAGGTCGATCGATTTTGATGGA</genome_strand>
        <mrna_strand>GTTTTTACAACCCATACACTAAGATTCAAGAAAATCATAATTGCTGCCTAACACATGCACCCAATCAGGATTTGGATAATGTTATCACATGGTCAGCTCATACAACCACCCACATACATATCTATAGGACCACTCTTCATCAAAGATGGTATCTTCATTGTGTTTTTCCATGGAAAACTACTTTAGTAGTAGGGATTTTGATGTTATAAATAAGAGTAGCATTAAATAGGTACCACAAAGCATGACATATTTCTGGTCTGTACAAATCAGGACCAAAAGTCTAGTCAATTAATCACATATGGATATCTCCTTACATAAACTTTTCCTCAATATATAAGATTAATATAATTATGAACCCAGCTTACTCACTCTTTGTCCTAGTTTTTTCTTCTTCTTATTTTTCTTTCTCCAAAGATCCTTTGATCTCTCTCATGCCACACGGATGATGCTTTCTCCATTACTGAAACTTGACATCACATTATATGCCGAGTGTCTAGTAGATGATGCTTGTCCCTGATCAAGTGACAATGATAATCTCAGTGACAACGACGATGGCTCGATTGTTGAATTGTGGTTGGCGTTAAGGTCGATCGATTTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596595" ref_strand="-" ref_description="SGN-E596595 [40080]">
      <seq>cttaacgccaaccacaactcaacaattgagccatcgtctttgtcactgagattatcattgtcacttgatcagggacaagcatcatctactagacactcggcatataacgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaagaagaagaaaaaactaggacaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgaaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100523" stop="101404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100823" g_stop="101101" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="285"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E596595" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596595" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100823" e_stop="101101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAG</genome_strand>
        <mrna_strand>CTTAACGCCAACCACAACTCAACAATTGAGCCATCGTCTTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCT--TG--AG-AAAAAAAGAAGAAGAAAAAACTAGGAC-AAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575058" ref_strand="+" ref_description="SGN-E575058 [34622]">
      <seq>ctttgtcactgagattatcattgtcacttgatcatgtacaagcatcatctactagacactcggcatataacgtgatgtcaagtttcagtaatggagaaagcatcatccgtgtggcatgagatcaaaggatctcttgagaaaaaaagaagaagaaaaaactaggacaagagtgagtaagctgggttcataattatattaatcttatatattgaggaaaagtttatgatatccatgtggtgattaaatgactacacttttggtcctgatttgtacagaccagaaatatgtcatgctttgtggtacctatttaatgctactcttatttataacatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="+" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100560" stop="101512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100860" g_stop="101217" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="+" ref_id="SGN-E575058" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.047" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100860" e_stop="101217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATAT-GTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCT</genome_strand>
        <mrna_strand>CTTTGTCACTGAGATTATCATTGTCACTTGATCATGTACAAGCATCATCTACTAGACACTCGGCATATAACGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCAT----GAGATCAAAGGATCTCT--TG--AG-AAAAAAAGAAGAAGAAAAAACTAGGAC-AAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTA--T-----GATATCCATGTGGTGATTAAATGACTACACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221365" ref_strand="+" ref_description="SGN-E221365 [cLEL-22-H8](-)">
      <seq>gatcaaaagtcacaagtggttccgcacaatcaactggaaaaaacttgatgccagagaactacagcctaagttcaaaccagatgtaattggcagagattgcacagccaatttcgataaatgttggactacgatgccaccggatgactcaccagcatctactccgacaacaggcgaacactttcaaggttacacttatgtagcaccaaatccttggctctcctctagttgatttaagtctttatcctgacaaaattccgaacttttagtttgctattgtaagtcattcttttttagagagaggatcatgagaagtgtatggatcagattgtatcatgataaaagcaaatctttctaactctttttgtgtactattgtaagctcaattcttctttaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105784" stop="104792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105484" g_stop="105093" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="414"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E221365" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105484" e_stop="105093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAAGTCACAAGTGGTTCCGCACAATCAACTGGAAGAAACTTGATGCCAGAGAACTACAGCCTAAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</genome_strand>
        <mrna_strand>GATCAAAAGTCACAAGTGGTTCCGCACAATCAACTGGAAAAAACTTGATGCCAGAGAACTACAGCCTAAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220988" ref_strand="+" ref_description="SGN-E220988 [cLEL-22-H20](-)">
      <seq>aagttcaaaccagatgtaattggcagagattgcacagccaatttcgataaatgttggactacgatgccaccggatgactcaccagcatctactccgacaacaggcgaacactttcaaggttacacttatgtagcaccaaatccttggctctcctctagttgatttaagtctttatcctgacaaaattccgaacttttagtttgctattgtaagtcattcttttttagagagaggatcatgagaagtgtatggatcagattgtatcatgataaaagcaaatctttctaactctttttgtgtactattgtaagctcaattcttctttaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105717" stop="104792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105417" g_stop="105093" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="347"/>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E220988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105417" e_stop="105093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</genome_strand>
        <mrna_strand>AAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557597" ref_strand="+" ref_description="SGN-E557597 [16420]">
      <seq>cttgaggatgattggaaaaggttcttttgggaaggtttttcagtgtgaagatgaaggggtatggtggtgagggtgagggtgatgggatattagcaatgaaagtgatgaggaaggacacggtaatcaagaataagcatgtggattatatgagagctgagagggatattctcactaaagttgagcacccttttattgttcagcttagatactcatttcagacgaagtctaagctgtatttgattttggattttataaatggaggacatcttttctatcatctatacagacaagggattttcagtgaggaccagctagatttatgctgctgagatagtttctgctgtttcacatcttcacaagagagggatcgtgcatcgagacctcaaacctgaaaatattctcatggatggtgatggaccatgtcatgctgacagattttggactggcaaaagagattgatgaatcaagcagatctaattcaattgtgtggaaccatgggaaatacatggctcccggagcattatacagtccaagggccacaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108590" stop="105711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108290" g_stop="108074" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108073" i_stop="106562" i_length="1512">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.866" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106561" g_stop="106479" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="301" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106478" i_stop="106394" i_length="85">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106393" g_stop="106273" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="421" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106272" i_stop="106132" i_length="141">
            <donor d_prob="0.901" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106131" g_stop="106011" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="547" r_length="126" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E557597" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108290" e_stop="108074"/>
          <exon e_start="106561" e_stop="106479"/>
          <exon e_start="106393" e_stop="106273"/>
          <exon e_start="106131" e_stop="106011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGATGATTGGAAAAGGTTCTTTTGGGAAGGTTTTTCAG-GTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAGGTAATAATTGCTTATACTGGACTTAATAAATTTGTCTATTCAGTTTCAGTTTAATGGATTGAAATTTGATGCATAAATAGTTTTACTATCCTGCTATTGTTACCTCTTATGCCTTCATAAATGTTGTGTTTTTTTGCTTTCTTTGAGCCGAGTGTTTATCGGAAATAGCCTCTCTACCTACACTCACCCTCCCCTGACCCCATTCATGGTACTATACTGGTTCTGTTGTTGTTGTTTGTACATAAATACAGGGATATCTTGGTGAGAATAGTGCGTCCACATTAAGGGACTTGGCTAAGTGTTATTCCAGTTATCAATCTGAACTGATGTTACTTGTTTTTCTTTTTCATGTACAAGAACAAGATAATCTTTTGTATTAGGAATTATTTGGTTTCAAGTCAGAAACTAAATTTAGTACTATGGTTATTCGTCCTTTCATTTAATTTTCTGTTACAGAAGTACTTAACAGATGAGGCTTTTCCTTGCCTCTCTCTGTGGGGAAAAGCTTTTCATCAAAAGAGGAAACTCTTTTGGGAATCTGGTTGAATTCTGGTGTCACTCATTCCTTCTTTTTTGAGCTGGGACAACATGAGCAAGTTTTGAACTTTATTAGTACTAGGAGTACTATTTAGCATCATTAATGCTAATGAAATTAATTTCAAGTGGAACTTCTGTTTTTGTCTAGAATCTAGTCAGATTGTTGATATTTGATTGGATCTTTTAGTAGATTTATTTAGACGATATCAGAGAACCTCATTAACTTTTTCTGTCGCGATTTTCTTTTTTTAGTTCCCATTATTATTTGCCTTTGATGCAGAATTGTCTTTGTTTCGGGAATGATCTTTGTGAAGGTTTTTTTGGACAATTTTTCTTTTGAACGGTTTAACTTTTGTATTATAGACCAGTACTTAGGTCGTACTGGAGAACCCATTTACAAATGAAATTATGAGAACAAAGAAGCTAAGAAAATTCAATCCTAACATGAGTCTAAAACTTTTAAGATTGATCTGCATCTACGGGAGCTCTTTGTTCTTCAATAGGAAATAGCAAAACATTGTTTCTATAAAATGCTACTTCTGGCCTCAAAATGTTTGGAATTCCTTTCTTTCCAGATAGCCCACCAATGCAAGCTGGAATGATCCTACAGTAGCTTCTATTTGTTACCCCAATCCCAGCCTCCTCCCAGCTAGAAAGAGTGTCAACAATCTTCCTGGGCATTGTCCAAGATGAATTTTTTTTTTTTTTTGGGCAATTTCAAAGTGAAGTTAATGATTTTGTAGAACTTTTGTTGGTTTTTTCTGTTTAGTTCCCATATTTCTCGATGTCTTTTTTAAGCACGGATTTTGTCTTTCTTTGGTGTACTCATTGTCATTGATTTTGCTACTGTGATTTGATTTTCGAAATCATTGAACTGATGCCTTACAGTCTCAGACCAAGCTTTTTTGCCCTTTGATGTGTTTGTTCTTATTAACAATATCAGTCCTTGATCATTTATTTTGGAATATGCTGCAGACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAGGTACCTTTGGTATTTTTTATTGTCTAACCAGTCATAATATGCATTCTGTTCTTCTAACTTCAGCTCTTGGGTGTGCTTTGGGTAGTGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGA-CATGTAATAGTCTTGCTGTACTCTACTGCAGGAACATGATTGATCCATGGAAGAAGAAACGAAATAAGAAATATGTAGCATTTTTCCTTTGAACATTGCAGTTGATTCATTCCTCTTCTTAAGCATATCATTTTCTCTACCCAGGTCATGCTGACAGATTTTGGACTGGCAAAAGAGATTGATGAATCAAGCAGATCTAATTCAA-TGTGTGGAACCAT-GG-AATACATGGCT-CCGGAG-ATTATACAGTCCAAGGGCCACAATAAAG</genome_strand>
        <mrna_strand>CTTGAGGATGATTGGAAAAGGTTCTTTTGGGAAGGTTTTTCAGTGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGGATATTAGCAATGAAAGTGATGAGGAAGGACACGGTAATCAAGAATAAGCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACTAAAGTTGAGCACCCTTTTATTGTTCAGCTTAGATACTCATTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTCTAAGCTGTATTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATCTATACAGACAAGGGATTTTCAG.....................................................................................TGAGGACCA-GCTA-GATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACAAGAGAGGGATCGTGCATCGAGACCTCAAACCTGAAAATATTCTCATGGATGGTGATGGACCAT.............................................................................................................................................GTCATGCTGACAGATTTTGGACTGGCAAAAGAGATTGATGAATCAAGCAGATCTAATTCAATTGTGTGGAACCATGGGAAATACATGGCTCCCGGAGCATTATACAGTCCAAGGGCCACAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224449" ref_strand="-" ref_description="SGN-E224449 [cLEL-27-D14](-)">
      <seq>cttttgggaaggtttttcaggtgaagatgaaggggtatggtggtgagggtgagggtgatggaatattagccatgaaagtgatgaggaaggacacagtaatcaagaataaccatgtggattatatgagagctgagagggatattctcaccaaagttgagcacccttttattgtgcagcttagatactcatttcagacgaagtctaagctttacttgattttggattttataaatggaggacatcttttctatcatttatacagacaagggattttcagtgaggaccaggcaaggatttatgctgctgagatagtttctgctgtttcacatcttcaccagagagggatcgtgcatcgagacctcaaaccagaaaatattctcatggatggtgatggacatgtcatgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108567" stop="105963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108267" g_stop="108074" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108073" i_stop="106562" i_length="1512">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106561" g_stop="106479" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106478" i_stop="106394" i_length="85">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106393" g_stop="106273" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="398" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106272" i_stop="106132" i_length="141">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106131" g_stop="106121" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="409" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E224449" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224449" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108267" e_stop="108074"/>
          <exon e_start="106561" e_stop="106479"/>
          <exon e_start="106393" e_stop="106273"/>
          <exon e_start="106131" e_stop="106121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGGAAGGTTTTTCAGGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAGGTAATAATTGCTTATACTGGACTTAATAAATTTGTCTATTCAGTTTCAGTTTAATGGATTGAAATTTGATGCATAAATAGTTTTACTATCCTGCTATTGTTACCTCTTATGCCTTCATAAATGTTGTGTTTTTTTGCTTTCTTTGAGCCGAGTGTTTATCGGAAATAGCCTCTCTACCTACACTCACCCTCCCCTGACCCCATTCATGGTACTATACTGGTTCTGTTGTTGTTGTTTGTACATAAATACAGGGATATCTTGGTGAGAATAGTGCGTCCACATTAAGGGACTTGGCTAAGTGTTATTCCAGTTATCAATCTGAACTGATGTTACTTGTTTTTCTTTTTCATGTACAAGAACAAGATAATCTTTTGTATTAGGAATTATTTGGTTTCAAGTCAGAAACTAAATTTAGTACTATGGTTATTCGTCCTTTCATTTAATTTTCTGTTACAGAAGTACTTAACAGATGAGGCTTTTCCTTGCCTCTCTCTGTGGGGAAAAGCTTTTCATCAAAAGAGGAAACTCTTTTGGGAATCTGGTTGAATTCTGGTGTCACTCATTCCTTCTTTTTTGAGCTGGGACAACATGAGCAAGTTTTGAACTTTATTAGTACTAGGAGTACTATTTAGCATCATTAATGCTAATGAAATTAATTTCAAGTGGAACTTCTGTTTTTGTCTAGAATCTAGTCAGATTGTTGATATTTGATTGGATCTTTTAGTAGATTTATTTAGACGATATCAGAGAACCTCATTAACTTTTTCTGTCGCGATTTTCTTTTTTTAGTTCCCATTATTATTTGCCTTTGATGCAGAATTGTCTTTGTTTCGGGAATGATCTTTGTGAAGGTTTTTTTGGACAATTTTTCTTTTGAACGGTTTAACTTTTGTATTATAGACCAGTACTTAGGTCGTACTGGAGAACCCATTTACAAATGAAATTATGAGAACAAAGAAGCTAAGAAAATTCAATCCTAACATGAGTCTAAAACTTTTAAGATTGATCTGCATCTACGGGAGCTCTTTGTTCTTCAATAGGAAATAGCAAAACATTGTTTCTATAAAATGCTACTTCTGGCCTCAAAATGTTTGGAATTCCTTTCTTTCCAGATAGCCCACCAATGCAAGCTGGAATGATCCTACAGTAGCTTCTATTTGTTACCCCAATCCCAGCCTCCTCCCAGCTAGAAAGAGTGTCAACAATCTTCCTGGGCATTGTCCAAGATGAATTTTTTTTTTTTTTTGGGCAATTTCAAAGTGAAGTTAATGATTTTGTAGAACTTTTGTTGGTTTTTTCTGTTTAGTTCCCATATTTCTCGATGTCTTTTTTAAGCACGGATTTTGTCTTTCTTTGGTGTACTCATTGTCATTGATTTTGCTACTGTGATTTGATTTTCGAAATCATTGAACTGATGCCTTACAGTCTCAGACCAAGCTTTTTTGCCCTTTGATGTGTTTGTTCTTATTAACAATATCAGTCCTTGATCATTTATTTTGGAATATGCTGCAGACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAGGTACCTTTGGTATTTTTTATTGTCTAACCAGTCATAATATGCATTCTGTTCTTCTAACTTCAGCTCTTGGGTGTGCTTTGGGTAGTGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGACATGTAATAGTCTTGCTGTACTCTACTGCAGGAACATGATTGATCCATGGAAGAAGAAACGAAATAAGAAATATGTAGCATTTTTCCTTTGAACATTGCAGTTGATTCATTCCTCTTCTTAAGCATATCATTTTCTCTACCCAGGTCATGCTGAC</genome_strand>
        <mrna_strand>CTTTTGGGAAGGTTTTTCAGGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAG.....................................................................................TGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGACAT.............................................................................................................................................GTCATGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451945" ref_strand="+" ref_description="SGN-E451945 [cSTS-15-K21]">
      <seq>tctctctatactttcatttgcctgtgtctctctttcatgttcattcatgcatctgtaatttgcaaaattcactgtacccattacttctctgctgataattcacggcttccttcttcttcttcttcttcttcttcccccaagcaaacacccttcaaagttgcaacctttcaattttttgatttcttcttttccatttattagtccctgcagatccctgatgtagccctttttctttcacagcctgctctgagttcaatctcagctggcttttcttgcctaaatcacattcttgattcacaaaataacaatagtaaagatgccatctttgttatttttgctgaccaattgataaaggggtttcaagaattcttgttaatatggcctttgcagctcagcagaagaaggctattcattccatgttagcaaacaagctgacccatctcaaaatccctgactcttcttcatcatctcctccttctactgatccagactttgatttttctgatgtttttggtgctcctacctcttcttcatctcctacatcttcttccagttttctaactgacccacaaatcattcatagtaggtcccattcttttgtgggtccatctccaaggatcactctctcaaagcctctgccttttaccaagaagttgattctgagagtgaaagtgatagtgataaagttaatactcatgtangtactcaccaaactgaatgtactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109352" stop="108060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109034" g_stop="108360" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="726" r_length="683" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E451945" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109034" e_stop="108360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCATCTGTAATTTGCAAAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTT-TT--TCTTCTTC--CCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTA-C-C-TC-TC--CT--T-CATCTTCTTCCAGTTTTCTAACTGACCCACAAATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACTCTCTCAAAACCTCTGCCTTTTCACCAAGAAGTTGATTCTGAGGGAGAAAGTGATAGTGATAAAGTTAATACTCATGTAGGTACTCACCAAACTGAATGTTCTGA</genome_strand>
        <mrna_strand>TTCATGCATCTGTAATTTGCAAAATTCACTGTACCCATTACTTCTCTGCTGATAATTCACGGCTTCCTTCTTCTTCTTCTTCTTCTTCTTCCCCCAAGCAAACACCCTTCAAAGTTGCAACCTTTCAATTTTTTGATTTCTTCTTTTCCATTTATTAGTCCCTGCAGATCCCTGATGTAGCCCTTTTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTT-TCTTGCCTAAATCACATTCTTGATTCAC-AAAATAACAATAGTAAAGATGCCATCTTTGTTATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTC-T--TCATCATCTCCTCCTTCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTTCTTCATCTCCTACATCTTCTTCCAGTTTTCTAACTGACCCACAAATCATTCATAGTAGGTCCCATTCTTTTGTGGGTCCATCTCCAAGGATCACTCTCTCAAAGCCTCTGCCTTTT-ACCAAGAAGTTGATTCTGAGAGTGAAAGTGATAGTGATAAAGTTAATACTCATGTANGTACTCACCAAACTGAATGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247713" ref_strand="+" ref_description="SGN-E247713 [cLEF-42-G12]">
      <seq>tccatacttttatttgtctctctctttcatgcatctgtggggtgcataatcccctgtacccattacttctctgctcataaatcacagcttccttcttctttttcttcttcccccattccaaacaccctttaaagttgcaacctttcactttcttgatttcttcttttccattaattagtccctgcagatccctgatgtagcccttgttctttcacagcctgctctgagttcaatctcagctggctttctcttgcctaaatcacattcttgattcacaaaaataacaatagtaaagatgcaatctttgatatttttgctgaccaattgataaaggggtttcaagaattcttgttaatatggcctttgcagctcagcagaagaaggctattcattccatgttagcaaacaagctgacccatctcaaaatccctgactcttcttcatcatcatctcctcctcctactgatccagactttgatttttctgatgtttttggtgctcctacctctccttcatcttcttccagttttctaactgacccacanatcattcatagtaggtcccactcttttgtgggtccatctccaaggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109359" stop="108164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109059" g_stop="108464" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E247713" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109059" e_stop="108464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATACTTTCATTTGTCTCTCTCTTTCATGCATCTGTAATTTGCAAAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTCCTTCATCTTCTTCCAGTTTTCTAACTGACCCACAAATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACT</genome_strand>
        <mrna_strand>TCCATACTTTTATTTGTCTCTCTCTTTCATGCATCTGTGGGGTGCATAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTCCTTCATCTTCTTCCAGTTTTCTAACTGACCCACANATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445675" ref_strand="+" ref_description="SGN-E445675 [cSTA-18-K23]">
      <seq>gtctctctctatactttcatttgcctctctctctctttcatgttcattcatgcatctgtaatttgcaaaattcactgtacccattacttctctgctgataaatcacggcttccttcttcttcttcttcccctaagcaaacacccttcaaagttgcaacctttcactttcttgattcttcttttccattaattagtccctgcagatccctgatgtagccctttttctttcacagcctgctctgagttcaatctcagctggcttttcttgcctaaaccacattcttgattcacaaaatagcaatagtaaagatacaatctttgttattttggctgaccaattgataaaggggtttcaagaattcttgttaatatggcctttgcagctcagcagaagaaggctattcattccatgttagcaaacaagctgacccatctcaaaatccctgactcttcttcatcatctcctccttctactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109367" stop="108293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109034" g_stop="108593" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="478" r_length="432" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E445675" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109034" e_stop="108593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCATCTGTAATTTGCAAAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGAT</genome_strand>
        <mrna_strand>TTCATGCATCTGTAATTTGCAAAATTCACTGTACCCATTACTTCTCTGCTGATAAATCACGGCTTCCTTCTTC-T-T-CTTCTTCCCCTA-AGCAAACACCCTTCAAAGTTGCAACCTTTCACTTTCTTGA-TTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTTTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTT-TCTTGCCTAAACCACATTCTTGATTCAC-AAAATAGCAATAGTAAAGATACAATCTTTGTTATTTTGGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTC-T--TCATCATCTCCTCCTTCTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445670" ref_strand="+" ref_description="SGN-E445670 [cSTA-18-K11]">
      <seq>ccctaagcaaacacccttcaaagttgcaacctctcactctgttgattcttcttttccattaattaatccctgcaaatccctgatgtagccctttttctttcacagcctgctctgagttcaatctcagctggcttttcttgcctaaaccacattcttgattcacaaaatagcaatagtaaagatacaatctttgttattttggctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109241" stop="108439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108948" g_stop="108739" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E445670" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108948" e_stop="108739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGAC</genome_strand>
        <mrna_strand>CCCTAAGCAAACACCCTTCAAAGTTGCAACCTCTCACTCTGTTGA-TTCTTCTTTTCCATTAATTAATCCCTGCAAATCCCTGATGTAGCCCTTTTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTT-TCTTGCCTAAACCACATTCTTGATTCAC-AAAATAGCAATAGTAAAGATACAATCTTTGTTATTTTGGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549724" ref_strand="+" ref_description="SGN-E549724 [TUS-6-L3](-)">
      <seq>ccataagagacagtgtaattattcctcgagggcccactatcaccagaattttggttgcttgtctaactggagcccttcctagttcacgactagaaacagtaacttacgctctactggcattgacccgggcatatgggtgaaaagctcttgagtgggcaaaggaatgtgtgtccttaattccatcaacagctgttacagaattggaaaggactaggtttttacaagctttgtctgatgcagcctctggagcaaatatgaacggtctggtagttccgattgacgagatttcagaggtttgccgacgtaatcgaactgttcaggaaatagttcaaggagctttgaggccacttgatctgaacatagtagctgtatcatagtggagagggtgcagaaggacctttttttaacctctcccttctttgcagacagtagtttttcatgattctttggaggccttatttcatcgtttgtccattgtgcggcttggaaatatatactagttatgcagcaaaagggtgttgtattgttgttactttttctacttgtgggaagtgatagaggaactcaaagcagatgcagttcacttggtttggctttttcacttttggtcctttttcgatttgggggggttttctttcgaaggtgaggagtttccagttttgaggtttaatcctggagttcaatgtataagcttcttgtagttggtaacatcttccagtttataactatggatagaatgtgcagttcttcagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111775" stop="110311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111475" g_stop="111378" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111377" i_stop="111272" i_length="106">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111271" g_stop="110616" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="752" r_length="654" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E549724" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111475" e_stop="111378"/>
          <exon e_start="111271" e_stop="110616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACAGTAAGTACAAATCATTATTTCTTTTTTATAAAAGGCAGATGGGTGAAGAGAAAGGTAGTAATAGTTTGTTGCATTCAAGAGTTACTCTGAGCTGTTTTCTTTGTAGGTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCGAAGGTGAGGAGTTTCCAGTTTTGAGGTTTAATCCTGGAGTTCAATGTATAAGCTTCTTGTATTTGGTAACATCTTCCAGTTTATAACTATGTATAGAATGTGCAGTTTCTTTCAG</genome_strand>
        <mrna_strand>CCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACA..........................................................................................................GTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTGAAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCGAAGGTGAGGAGTTTCCAGTTTTGAGGTTTAATCCTGGAGTTCAATGTATAAGCTTCTTGTAGTTGGTAACATCTTCCAGTTTATAACTATGGATAGAATGTGCAG-TTC-TTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549746" ref_strand="+" ref_description="SGN-E549746 [TUS-6-L3]">
      <seq>ccataagagacagtgtaattattcctcgagggcccactatcaccagaattttggttgcttgtctaactggagcccttcctagttcacgactagaaacagtaacttacgctctactggcattgacccgggcatatgggttgaaagctcttgagtgggcaaaggaatgtgtgtccttaattccatcaacagctgttacagaattggaaaggactaggtttttacaagctttgtctgatgcagcctctggagcaaatatgaacggtctggtagttccgattgacgagatttcagaggtttgccgacgtaatcgaactgttcaggaaatagttcaaggagctttgaggccacttgatctgaacatagtagctgtatcatagtggagagggtgcagaaggacctttttttaacctctcccttctttgcagacagtagtttttcatgattctttggaggccttatttcatcgtttgtccattgtgcggcttggaaatatatactagttatgcagcaaaagggtgttgtattgttgttactttttctacttgtgggaagtgatagaggaactcaaagcagatgcagttcacttggtttggctttttcacttttggtcctttttcgatttgggggggttttctttcgaaggtgaggagtttcaagttttgaggtttatcctggaggtcaatgtataagcttcttgtatttgggtacatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111775" stop="110355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111475" g_stop="111378" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111377" i_stop="111272" i_length="106">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111271" g_stop="110655" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="714" r_length="616" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E549746" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111475" e_stop="111378"/>
          <exon e_start="111271" e_stop="110655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACAGTAAGTACAAATCATTATTTCTTTTTTATAAAAGGCAGATGGGTGAAGAGAAAGGTAGTAATAGTTTGTTGCATTCAAGAGTTACTCTGAGCTGTTTTCTTTGTAGGTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCGAAGGTGAGGAGTTTCCAGTTTTGAGGTTTAATCCTGGAGTTCAATGTATAAGCTTCTTGTATTTGGTAACATCTTC</genome_strand>
        <mrna_strand>CCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACA..........................................................................................................GTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCGAAGGTGAGGAGTTTCAAGTTTTGAGGTTT-ATCCTGGAGGTCAATGTATAAGCTTCTTGTATTTGGGTACATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699682" ref_strand="+" ref_description="SGN-E699682 [FA10DF04]">
      <seq>cccttcattggtggattgtgccatgatcggcatcaccgtgcagcacagggaggcttgcaattcaatattgaactttgtgtctgatatattcgatctttcgaactctacaaacggggaaagttgcctatccataagagacagtgtaattattcctcgagggcccactatcaccagaattttggttgcttgtctaactggagcccttcctagttcacgactagaaacagtaacttacgctctactggcattgacccgggcatatgggttgaaagctcttgagtgggcaaaggaatgtgtgtccttaattccatcaacagctgttacagaattggaaaggactaggtttttacaagctttgtctgatgcagcctctggagcaaatatgaacggtctggtagttccgattgacgagatttcagaggtttgccgacgtaatcgaactgttcaggaaatagttcaaggagctttgaggccacttgatctgaacatagtagctgtatcatagtggagagggtgcagaaggacctttttttaacctctcccttctttgcagacagtagtttttcatgattctttggaggccttatttcatcgtttgtccattgtgcggcttggaaatatatactagttatgcagcaaaagggtgttgtattgttgttactttttctacttgtgggaagtgatagaggaactcaaagcagatgcagttcacttggtttggctttttcacttttggtcctttttcgatttgggggggttttctttccaaggtgaggagtttccagttttgaggtttaatcctggagttcaatgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113765" stop="110381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113466" g_stop="113419" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113418" i_stop="111556" i_length="1863">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111555" g_stop="111378" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="226" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111377" i_stop="111272" i_length="106">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111271" g_stop="110681" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="817" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E699682" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113466" e_stop="113419"/>
          <exon e_start="111555" e_stop="111378"/>
          <exon e_start="111271" e_stop="110681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCATTGGTGGATTGTGCCATGATCGGCATCACCGTGCAGCACAGGTAAATCTCTCTATTTCCTCCTCACCCCATGAACTTATGGCCTGTTTACATCTATTTTGATGTAAAGAGGAAGCTCTGGTTCTACACGGGTAGACTGATGAAGATTTTGTATTCTGGACAATAACATAAAATTGTGAGAAATGTGAGATGAATTGGTTGAATTTGTGAGGTCAAACGTCTTATGGTTGAATCTTGGTAGCGCCAATAATTTATCTCTTCAGCGTAGAATACAATTGTTGAGATATATGCCTTCGTAGGCAGAACTTCAATTTCATCTATAACTTAAATTTTTTTTTATGGAACTATCTGGTAGACCTCAAGCTGCTGGCTGCATGTCATACATGCCATGTCTGTTACAGATGTAATTAATGCAAGGACTGCAACTGAGTTGATGACATCTGTGTGAGCCAATCATTTAATTTTATGAATTTTGTTATAGTGCCTCATGAGAGTATCTTTTCTCTGACAAAACACCAGTAAATTTCGATTACTTGACCTCTTATTATGTAATGGCTTTGGTATAACATAAAATGCAATTTAATTATTTCACACAAGTTGCATCTGACTTTGCTCTGCCAACTTCAATTCTTCTAGTAGTTTGGCAGCATGAGTCCAAGCTGCCGTAATTGTGGTGCTTTGTACACTAGATTTTGCAGTCACATTTTCTTTCTTTCTTTCCTAGGAGAAGTTGCTCCAACTAGAATGCTATACTTGGAATTATAGCGTCCAGCAAAGTTTGTCACCATCCAATCTGCACCGGTCATGTTTGATTCACGTGGAGTAATACTTCATCTGGAGCTTATTATATATGCTGAAGCCTGAAGTATGCATCCTGATGAGTATCACTAGAGAATGAAATTTGTAGTCCTAACTAGAAAGATAATATTAGGTCAGTCATTGTGAGGTAGTCTAGTTTACCAACTTCTTTTTTATCTCCCTGGAACACCAAGAGGCTCCTCTGACCTAGTAGATCGCTAAGGGGACCAAAATCTTATCTCATCATAAATTGATTTTCTTCCCTATGAGTTAGTCTCAATAATACCATGGTTTTTGTGACATTGACACATGTAACTGTCAGAAAAGTGCGGACGAAAAGCATGTAGATAACTATGATCAAGTACCTGAGTGAATGATACAAGAACTGAGTCACGGGACACGGCCAGTTTGATTAGCATGAATTACTTGATGAGACATTAACTGGTCTGATGCTGAAGGAACACATATTCACTATGTTGGTTGTCTATTTTGTTGCATTTCTCAATGCAATATAAGCAGCAGTTTGTTCCACATCAATATGGCGCTATATTTGTTTCCAAAGTCCATTGCCTACAATATGGGTTACAGAGGCCAAGTACCCAAGATATTTAGTAAAAGTATACTTGTAGTTGAATTTTAATATGTCAAGCATAGAATCATCTTTTGATTACCCCCCCCCCCCCCCCCGCCCCCCGCTGTTTCAATTTAAGTGTGTCTTAGTTTGATTAGGTACAGAGTTTAAGAAAATTAGGGAAACTTTTGAATCTTGTGTGGCCTAAAACTAAAGACGTGGGTAATGTATCAAGATTTCTTTTGAATCTTGTGATCTTAAACAAACCATGTAAGATGGTGGAATTAGGGAGTTGCCAATGTCATTCTTTCTGAAACATACTAAGACCGAAAGTAAGGCACTTACATTAAAATGGCGGGAGTATATCATTGTCCATTCATCTATCTAATTACTAGAGAACCTATCAGGAACTGCCAGGGAACTCTGGCCCTTTTAGATTTGGATTTCTCCTTCTCTAGTAATTCTATTATCCATTTGGTATGATATTTTATTATGTTTTGATTGTTCTAAATTTCGAAGTATTGACTGGATTGTAGGGAGGCTTGCAATTCAATATTGAACTTTGTGTCTGATATATTCGATCTTTCGAACTCTACAAACGGGGAAAGTTGCCTATCCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACAGTAAGTACAAATCATTATTTCTTTTTTATAAAAGGCAGATGGGTGAAGAGAAAGGTAGTAATAGTTTGTTGCATTCAAGAGTTACTCTGAGCTGTTTTCTTTGTAGGTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCGAAGGTGAGGAGTTTCCAGTTTTGAGGTTTAATCCTGGAGTTCAATGTATA</genome_strand>
        <mrna_strand>CCCTTCATTGGTGGATTGTGCCATGATCGGCATCACCGTGCAGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTTGCAATTCAATATTGAACTTTGTGTCTGATATATTCGATCTTTCGAACTCTACAAACGGGGAAAGTTGCCTATCCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACA..........................................................................................................GTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCCAAGGTGAGGAGTTTCCAGTTTTGAGGTTTAATCCTGGAGTTCAATGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246157" ref_strand="+" ref_description="SGN-E246157 [cLEF-40-F7]">
      <seq>cataagagacagtgtaattattcctcgagggcccactatcaccagaattttggttgcttgtctaactggagcccttcctagttcacgactagaaacagtaacttacgctctactggcattgacccgggcatatgggttgaaagctcttgagtgggcaaaggaatgtgtgtccttaattccatcaacagctgttacagaattggaaaggactaggtttttacaagctttgtctgatgcagcctctggagcaaatatgaacggtctggtagttccgattgacgagatttcagaggtttgccgacgtaatcgaactgttcaggaaatagttcaaggagctttgaggccacttgatctgaacatagtagctgtatcatagtggagagggtgcagaaggacctttttttaacctctcccttctttgcagacagtagtttttcatgattctttggaggccttatttcatcgtttgtccattgtgcggcttggaaatatatactagttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111774" stop="110564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111474" g_stop="111378" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111377" i_stop="111272" i_length="106">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111271" g_stop="110864" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="505" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E246157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111474" e_stop="111378"/>
          <exon e_start="111271" e_stop="110864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACAGTAAGTACAAATCATTATTTCTTTTTTATAAAAGGCAGATGGGTGAAGAGAAAGGTAGTAATAGTTTGTTGCATTCAAGAGTTACTCTGAGCTGTTTTCTTTGTAGGTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGC</genome_strand>
        <mrna_strand>CATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACA..........................................................................................................GTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568618" ref_strand="+" ref_description="SGN-E568618 [12928]">
      <seq>aagatgtatccgatactgtctcaactattttttccctctactgtgtttccatcattggtggattgtgccatgatcggatcaccgtgcagcacaggggaggcttgcaattcaatattgaactttgtatctgatatattcgatcttgcaaactctacaaacggagaaagttgcctatccataagggacagtgtaattattcctcgagggcccactatcaccagaattttggttgcttgtctaactggagcccttcctagttcacgactagaaacagtaacttacgctctactggcattgacccgggcttatgggttgaaagctcttgagtgggcaaaggaatgtgtgtccttaattccatcaacagctgttacagaattggaaaggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113814" stop="110857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113514" g_stop="113419" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113418" i_stop="111556" i_length="1863">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111555" g_stop="111378" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="273" r_length="179" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111377" i_stop="111272" i_length="106">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111271" g_stop="111157" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="388" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E568618" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113514" e_stop="113419"/>
          <exon e_start="111555" e_stop="111378"/>
          <exon e_start="111271" e_stop="111157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGTATCCGATACTGTCCTCAACTATTTTTTCCCTCTACTGTGTTTCCATCATTGGTGGATTGTGCCATGATCGGCATCACCGTGCAGCACAGGTAAATCTCTCTATTTCCTCCTCACCCCATGAACTTATGGCCTGTTTACATCTATTTTGATGTAAAGAGGAAGCTCTGGTTCTACACGGGTAGACTGATGAAGATTTTGTATTCTGGACAATAACATAAAATTGTGAGAAATGTGAGATGAATTGGTTGAATTTGTGAGGTCAAACGTCTTATGGTTGAATCTTGGTAGCGCCAATAATTTATCTCTTCAGCGTAGAATACAATTGTTGAGATATATGCCTTCGTAGGCAGAACTTCAATTTCATCTATAACTTAAATTTTTTTTTATGGAACTATCTGGTAGACCTCAAGCTGCTGGCTGCATGTCATACATGCCATGTCTGTTACAGATGTAATTAATGCAAGGACTGCAACTGAGTTGATGACATCTGTGTGAGCCAATCATTTAATTTTATGAATTTTGTTATAGTGCCTCATGAGAGTATCTTTTCTCTGACAAAACACCAGTAAATTTCGATTACTTGACCTCTTATTATGTAATGGCTTTGGTATAACATAAAATGCAATTTAATTATTTCACACAAGTTGCATCTGACTTTGCTCTGCCAACTTCAATTCTTCTAGTAGTTTGGCAGCATGAGTCCAAGCTGCCGTAATTGTGGTGCTTTGTACACTAGATTTTGCAGTCACATTTTCTTTCTTTCTTTCCTAGGAGAAGTTGCTCCAACTAGAATGCTATACTTGGAATTATAGCGTCCAGCAAAGTTTGTCACCATCCAATCTGCACCGGTCATGTTTGATTCACGTGGAGTAATACTTCATCTGGAGCTTATTATATATGCTGAAGCCTGAAGTATGCATCCTGATGAGTATCACTAGAGAATGAAATTTGTAGTCCTAACTAGAAAGATAATATTAGGTCAGTCATTGTGAGGTAGTCTAGTTTACCAACTTCTTTTTTATCTCCCTGGAACACCAAGAGGCTCCTCTGACCTAGTAGATCGCTAAGGGGACCAAAATCTTATCTCATCATAAATTGATTTTCTTCCCTATGAGTTAGTCTCAATAATACCATGGTTTTTGTGACATTGACACATGTAACTGTCAGAAAAGTGCGGACGAAAAGCATGTAGATAACTATGATCAAGTACCTGAGTGAATGATACAAGAACTGAGTCACGGGACACGGCCAGTTTGATTAGCATGAATTACTTGATGAGACATTAACTGGTCTGATGCTGAAGGAACACATATTCACTATGTTGGTTGTCTATTTTGTTGCATTTCTCAATGCAATATAAGCAGCAGTTTGTTCCACATCAATATGGCGCTATATTTGTTTCCAAAGTCCATTGCCTACAATATGGGTTACAGAGGCCAAGTACCCAAGATATTTAGTAAAAGTATACTTGTAGTTGAATTTTAATATGTCAAGCATAGAATCATCTTTTGATTACCCCCCCCCCCCCCCCCGCCCCCCGCTGTTTCAATTTAAGTGTGTCTTAGTTTGATTAGGTACAGAGTTTAAGAAAATTAGGGAAACTTTTGAATCTTGTGTGGCCTAAAACTAAAGACGTGGGTAATGTATCAAGATTTCTTTTGAATCTTGTGATCTTAAACAAACCATGTAAGATGGTGGAATTAGGGAGTTGCCAATGTCATTCTTTCTGAAACATACTAAGACCGAAAGTAAGGCACTTACATTAAAATGGCGGGAGTATATCATTGTCCATTCATCTATCTAATTACTAGAGAACCTATCAGGAACTGCCAGGGAACTCTGGCCCTTTTAGATTTGGATTTCTCCTTCTCTAGTAATTCTATTATCCATTTGGTATGATATTTTATTATGTTTTGATTGTTCTAAATTTCGAAGTATTGACTGGATTGTAG-GGAGGCTTGCAATTCAATATTGAACTTTGTGTCTGATATATTCGATCTTTCGAACTCTACAAACGGGGAAAGTTGCCTATCCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACAGTAAGTACAAATCATTATTTCTTTTTTATAAAAGGCAGATGGGTGAAGAGAAAGGTAGTAATAGTTTGTTGCATTCAAGAGTTACTCTGAGCTGTTTTCTTTGTAGGTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTA</genome_strand>
        <mrna_strand>AAGATGTATCCGATACTGT-CTCAACTATTTTTTCCCTCTACTGTGTTTCCATCATTGGTGGATTGTGCCATGATCGG-ATCACCGTGCAGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCTTGCAATTCAATATTGAACTTTGTATCTGATATATTCGATCTTGCAAACTCTACAAACGGAGAAAGTTGCCTATCCATAAGGGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACA..........................................................................................................GTAACTTACGCTCTACTGGCATTGACCCGGGCTTATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259070" ref_strand="+" ref_description="SGN-E259070 [cLEG-41-I18]">
      <seq>gaggaaatacaaggactatatggacaacaccatcagccgtgtttgctttatctctctagtgaagtcattaagatatttggttcagatccatcctgtgcaaattacttgaaagttctcattgagtctctctttagccatacagcatgtcttcttacaaagattcacgatttcacttgccgtccggatatagcaaatgagtgggttttgctggcatcaagatgtatccaatactgatctcaactattgtttccctctactgtgtccccatcattggtggattgtgccatgatcggcatcaccgtgcatcacacggaggcttgcaattcaatattgaactttgtgtctgatatattcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114183" stop="111209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113883" g_stop="113812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113811" i_stop="113728" i_length="84">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.199" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113727" g_stop="113635" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="165" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113634" i_stop="113565" i_length="70">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.156" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113564" g_stop="113419" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="311" r_length="146" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113418" i_stop="111556" i_length="1863">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111555" g_stop="111509" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="358" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E259070" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113883" e_stop="113812"/>
          <exon e_start="113727" e_stop="113635"/>
          <exon e_start="113564" e_stop="113419"/>
          <exon e_start="111555" e_stop="111509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAGGTATTTGAGTTCTTTCTTGCATTGCAAAATTTTAACCAAATTTGCAGTTTCCATTTTAAGCAACAGTTGGACCTTCTGCCGCAGATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAGGTACAGTCTGTTGCTTTATTTTGCATTTCACCGCTAGTTATGTAAGCTAACTCCGAAGTGTGGTTCACAGGATTTCACTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATACTGTCCTCAACTATTTTTTCCCTCTACTGTGTTTCCATCATTGGTGGATTGTGCCATGATCGGCATCACCGTGCAGCACAGGTAAATCTCTCTATTTCCTCCTCACCCCATGAACTTATGGCCTGTTTACATCTATTTTGATGTAAAGAGGAAGCTCTGGTTCTACACGGGTAGACTGATGAAGATTTTGTATTCTGGACAATAACATAAAATTGTGAGAAATGTGAGATGAATTGGTTGAATTTGTGAGGTCAAACGTCTTATGGTTGAATCTTGGTAGCGCCAATAATTTATCTCTTCAGCGTAGAATACAATTGTTGAGATATATGCCTTCGTAGGCAGAACTTCAATTTCATCTATAACTTAAATTTTTTTTTATGGAACTATCTGGTAGACCTCAAGCTGCTGGCTGCATGTCATACATGCCATGTCTGTTACAGATGTAATTAATGCAAGGACTGCAACTGAGTTGATGACATCTGTGTGAGCCAATCATTTAATTTTATGAATTTTGTTATAGTGCCTCATGAGAGTATCTTTTCTCTGACAAAACACCAGTAAATTTCGATTACTTGACCTCTTATTATGTAATGGCTTTGGTATAACATAAAATGCAATTTAATTATTTCACACAAGTTGCATCTGACTTTGCTCTGCCAACTTCAATTCTTCTAGTAGTTTGGCAGCATGAGTCCAAGCTGCCGTAATTGTGGTGCTTTGTACACTAGATTTTGCAGTCACATTTTCTTTCTTTCTTTCCTAGGAGAAGTTGCTCCAACTAGAATGCTATACTTGGAATTATAGCGTCCAGCAAAGTTTGTCACCATCCAATCTGCACCGGTCATGTTTGATTCACGTGGAGTAATACTTCATCTGGAGCTTATTATATATGCTGAAGCCTGAAGTATGCATCCTGATGAGTATCACTAGAGAATGAAATTTGTAGTCCTAACTAGAAAGATAATATTAGGTCAGTCATTGTGAGGTAGTCTAGTTTACCAACTTCTTTTTTATCTCCCTGGAACACCAAGAGGCTCCTCTGACCTAGTAGATCGCTAAGGGGACCAAAATCTTATCTCATCATAAATTGATTTTCTTCCCTATGAGTTAGTCTCAATAATACCATGGTTTTTGTGACATTGACACATGTAACTGTCAGAAAAGTGCGGACGAAAAGCATGTAGATAACTATGATCAAGTACCTGAGTGAATGATACAAGAACTGAGTCACGGGACACGGCCAGTTTGATTAGCATGAATTACTTGATGAGACATTAACTGGTCTGATGCTGAAGGAACACATATTCACTATGTTGGTTGTCTATTTTGTTGCATTTCTCAATGCAATATAAGCAGCAGTTTGTTCCACATCAATATGGCGCTATATTTGTTTCCAAAGTCCATTGCCTACAATATGGGTTACAGAGGCCAAGTACCCAAGATATTTAGTAAAAGTATACTTGTAGTTGAATTTTAATATGTCAAGCATAGAATCATCTTTTGATTACCCCCCCCCCCCCCCCCGCCCCCCGCTGTTTCAATTTAAGTGTGTCTTAGTTTGATTAGGTACAGAGTTTAAGAAAATTAGGGAAACTTTTGAATCTTGTGTGGCCTAAAACTAAAGACGTGGGTAATGTATCAAGATTTCTTTTGAATCTTGTGATCTTAAACAAACCATGTAAGATGGTGGAATTAGGGAGTTGCCAATGTCATTCTTTCTGAAACATACTAAGACCGAAAGTAAGGCACTTACATTAAAATGGCGGGAGTATATCATTGTCCATTCATCTATCTAATTACTAGAGAACCTATCAGGAACTGCCAGGGAACTCTGGCCCTTTTAGATTTGGATTTCTCCTTCTCTAGTAATTCTATTATCCATTTGGTATGATATTTTATTATGTTTTGATTGTTCTAAATTTCGAAGTATTGACTGGATTGTAGGGAGGCTTGCAATTCAATATTGAACTTTGTGTCTGATATATTCGATC</genome_strand>
        <mrna_strand>GAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTGCTTTATCTCTCTAGTGAAGTCATTAAG....................................................................................ATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAC......................................................................GATTTCACTTGCCGTCCGGATATAGCAAATGAGTGGGTTTTGCTGGCATCAAGATGTATCCAATACTGATCTCAACTATTGTTTCCCTCTACTGTGTCCCCATCATTGGTGGATTGTGCCATGATCGGCATCACCGTGCATCACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTTGCAATTCAATATTGAACTTTGTGTCTGATATATTCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709724" ref_strand="+" ref_description="SGN-E709724 [FA52DG08]">
      <seq>acaatcggagcgtattcaaagtggcttgatgcttcatcaaatggattttcacatttgcccacactcattgatattcttgtgagaggcatgagcacgtgtgaagattccgcagctgcagctgctttagctttcagacacatatgcaatgattgcaagaagaagctttgtgggtcactagatggtctgtttcaaatttaccaaacggcagtcattggggaaggtcccttcaaagtttccgcggaagattcgttgcatctggttgaagctttaagtatggttattacagagcttccttcggaacatgctaagaaggcacttgaggcagtatgcctgccatctgttgctcagttacaagagatgatcaatcaaggtccccaagttttggggcaaaaaaatgctcgggaattaactgttcattttgatcgacttcaaatatatttagatatgtaaatcacccagaagcggttgcagatgcaattcaaaaactttggccaatattcaaagccatttttgatgttcgtgcttgggacatgcggacgatggagtctctttgccgggcttgtaaaaatgctgtacgaacttctaagaggctcatgggggttacaattggggcgatgctggaggaaatacaaggactatatggacaacaccatcagccgtgttttctttatctctctagtgaagtcattaagatatttggttcagatccatcctgtgcaaattacttgaaagttctcattgagtctctctttagccatacagcatgtcttcttacaaagattcaggatttcccttcccgtccggatatagcagatgattgttttttgctggcatcaagatgtatccgataatgtcctcaactattttttccctccactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153G23-6hywM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153G23.1" temp_strand="-" temp_description="C06HBa0153G23.1  AC209511.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0153G23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117022" stop="113169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116722" g_stop="116575" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116574" i_stop="115144" i_length="1431">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115143" g_stop="115020" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="272" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115019" i_stop="114897" i_length="123">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114896" g_stop="114815" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="354" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114814" i_stop="114743" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114742" g_stop="114654" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="442" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114653" i_stop="114573" i_length="81">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114572" g_stop="114498" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="517" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114497" i_stop="114407" i_length="91">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114406" g_stop="114352" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="572" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114351" i_stop="113932" i_length="420">
            <donor d_prob="0.377" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113931" g_stop="113812" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="692" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113811" i_stop="113728" i_length="84">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.199" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113727" g_stop="113635" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="785" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="113634" i_stop="113565" i_length="70">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="113564" g_stop="113469" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="881" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153G23.1" gen_strand="-" ref_id="SGN-E709724" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116722" e_stop="116575"/>
          <exon e_start="115143" e_stop="115020"/>
          <exon e_start="114896" e_stop="114815"/>
          <exon e_start="114742" e_stop="114654"/>
          <exon e_start="114572" e_stop="114498"/>
          <exon e_start="114406" e_stop="114352"/>
          <exon e_start="113931" e_stop="113812"/>
          <exon e_start="113727" e_stop="113635"/>
          <exon e_start="113564" e_stop="113469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCGGAGCGTATTCAAAGTGGCTTGATGCTTCATCAAATGGATTTTCACATTTGCCCACACTCATTGATATTCTTGTGAGAGGCATGAGCACGTGTGAAGATTCCGCAGCTGCAGCTGCTTTAGCTTTCAGACACATATGCAATGGTAAATACTTCGTTCAGTTTCTCATGTTTGTATTTATTTTTCTTTTAGTGTTACTTGTAGTAATTCTGCCTTTTATCCAAAAAAAAATTGATACTCCACCCTTTTTGTTAAAGAACTGATTATTTTTCTATGATCATTCTATTTTATTTATTTTCAAGAGATCTCTAATATTTGATAATTGATGAAAGTTTACCACTTCATGGTTGGGCTTTGTCAACGATATAATTAATATCTGTGAGACTAGTTGGTGGATTATGATACACCTCTTGTTTCAAATTCACATCCAGTTTATCTGTGGCAGCTATTTCATAAAGACAACTTGGAAAAGAGCCAAAAATATCTCTATCCTAGGGAAAAAGGCTCAACAACACCATCCATCCACCTTTTGATCTGAATTACCCCCAATCTATTTTTTTCTATTTTGTTCGGACTCTTCAAAAATATCAATGGGAGCGTGTCAGATGTTCTAAAAGTAGTGTGTTTTTGGTAAATCCGACAAGGGTGCAGCATCGAAAGTGAAGAGTCCGTGCAACTTATATTTTATATTAAAATACCTCAAACTAAAACCTTAAACTTGATTGTTTTTCCTAATTTTTTTTAAAAAGCCATGTGATCTATTTTGATTGACCAAAATATTACTTATTTCAAAAATTAATCCCACCCATTTCGTTAATCTAAACTTGCCCCAAATAATCTGGTTCGTTCTTTATAATCTAAAATCACCCGCTGATATTTTTATTCCACCCATTTAAACTCTTGTAAATATTCTATAGAAGCCACAAAGTCTTGCAACTCTGAATCTCTCTCCTAGCCAGGTGATTGAGCCTCTGTTTTCCCCTCTTGGATCCCCAACTCAAGCTATCCAACAACTTGGAACTGAATTGTTATCTCATCTCTTTGCACATGAGCATTTTAAGCAGGATACAAACAAGAAAAGCAGTAGTGTCTCTTGTGCAGCTAGCAGGCATTGGTATTTTGAACTTGCAACAGACATCAATTAGGGTCAGATTATTAGGCGCGAGTTTGAATTAAAAAAATGGGTGGCTTTAATTTTTAAATAAAGTAATGTAAGTGGCCAATCAAAATAGCCATGTGGCTTTTTTAAAAACTAGTAAAAATCATCAAGTTTAAGGTGTTAGTTTAGGGGTATTCTTGAGCAAAAAAAAAACATATAGGTTGAGGGTATTTTTAGACCAAAAGGTGGATGAAGGGTATTGATGAGCCATTTTCCATAGGATAGAGGTATTTTTGGCCCTTTTCTGAATAGAATTTTAGGATCAATTTTTTCTTAACTTTGCGAAATTGTATCTTGGTTACTCAGTCCATCTGAAATGACCTGGTGAATTTGCTCCTTCTCAGAGTTAAACATTCTGGCCAGAGTTAATAGTTCTTTAGTTCAATCTCGTTTCAATCTTTTTACTGTCATTGTAGATTGCAAGAAGAAGCTTTGTGGGTCACTAGATGGTCTGTTTCAAATTTACCAAACGGCAGTCATTGGGGAAGGTCCCTTCAAAGTTTCCGCGGAAGATTCGTTGCATCTGGTTGAAGCTTTAAGGTATTATCTAATGCTTAGAAGCTGATCCCTAAGTTAGTTAAGTTCTTTATCTTGTTAAATCCTTACTCTCACCACCCACTTTCCAAGTAAACACACTGGTCTTTTTTCTTCTTTTTTTTGCAGTATGGTTATTACAGAGCTTCCTTCGGAACATGCTAAGAAGGCACTTGAGGCAGTATGCCTGCCATCTGTTGCTCAGTTACAAGTAAGTTTCCTTTCTAAAATTTTATGAATAACTTTAAGTATCAATTTACAAATACTTGGAGTTAACTTCCAGGAGATGATCAATCAAGGTCCCCAAGTTTTGGGGCAAAAAAATGCTCGGGAATTAACTGTTCATTTTGATCGACTTGCAAATATATTTAGGTACAGGAAATTTCCTTGTTCCGTCTTTCATCTATTTGCTTCTATTTGCATTGTCAATTTTGGGACTGAAACCATTTGCAGATATGTAAATCACCCAGAAGCGGTTGCAGATGCAATTCAAAAACTTTGGCCAATATTCAAAGCCATTTTTGATGTGTAAGAAAGCTGTATGCTGTAAATATTGCTTTTAGGATAACTCTTTGATTATAAATTTCCCTAATGGTATTGTTTGATGATATTCACATAGTCGTGCTTGGGACATGCGGACGATGGAGTCTCTTTGCCGGGCTTGTAAAAATGCTGTAAGTTCAGTTATCTATGCCATCCCCTGCCAAGGGATCCAGGAAATCATTCATCAAGCTTCCTATTCCTGAAAAATGTTGTAGTGACACAACTTCTCCTGTAAATATGTGGCGTTTTTCATAGTCCTTCGAATACTTCGTGTTCTTCTCTTCTTTATTCTTGTGCCTCTTGACATCTACATCCGGAGCTGATTTTTTTTCTTCTTTCTGTGAATTTCTGCTGACTTATGTTGCTTAACGTATGACCTCAAACTGCTTTTATGTTACTCTTTGAAATTGTGATTGATAATGTTCTCTACAGCTTATTTAAAGTGGTGTGTTCTGAACTCTGAAGACAAGTATCATCAAGATTCTAGTCTGAGCCCGACAATGAGCAAATGGTATTATGACTTTCCTAACTATGATGATTTCATCCATTAGGTACGAACTTCTAAGAGGCTCATGGGGGTTACAATTGGGGCGATGCTGGAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAGGTATTTGAGTTCTTTCTTGCATTGCAAAATTTTAACCAAATTTGCAGTTTCCATTTTAAGCAACAGTTGGACCTTCTGCCGCAGATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAGGTACAGTCTGTTGCTTTATTTTGCATTTCACCGCTAGTTATGTAAGCTAACTCCGAAGTGTGGTTCACAGGATTTCACTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATACTGTCCTCAACTATTTTTTCCCTCTACTGTG</genome_strand>
        <mrna_strand>ACAATCGGAGCGTATTCAAAGTGGCTTGATGCTTCATCAAATGGATTTTCACATTTGCCCACACTCATTGATATTCTTGTGAGAGGCATGAGCACGTGTGAAGATTCCGCAGCTGCAGCTGCTTTAGCTTTCAGACACATATGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGAAGAAGCTTTGTGGGTCACTAGATGGTCTGTTTCAAATTTACCAAACGGCAGTCATTGGGGAAGGTCCCTTCAAAGTTTCCGCGGAAGATTCGTTGCATCTGGTTGAAGCTTTAAG...........................................................................................................................TATGGTTATTACAGAGCTTCCTTCGGAACATGCTAAGAAGGCACTTGAGGCAGTATGCCTGCCATCTGTTGCTCAGTTACAA........................................................................GAGATGATCAATCAAGGTCCCCAAGTTTTGGGGCAAAAAAATGCTCGGGAATTAACTGTTCATTTTGATCGACTT-CAAATATATTTAG.................................................................................ATATGTAAATCACCCAGAAGCGGTTGCAGATGCAATTCAAAAACTTTGGCCAATATTCAAAGCCATTTTTGATGT...........................................................................................TCGTGCTTGGGACATGCGGACGATGGAGTCTCTTTGCCGGGCTTGTAAAAATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAACTTCTAAGAGGCTCATGGGGGTTACAATTGGGGCGATGCTGGAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAG....................................................................................ATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAG......................................................................GATTTCCCTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATAATGTCCTCAACTATTTTTTCCCTCCACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>181</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2245" PGL_stop="3087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2245" e_stop="3087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2245" e_stop="3087" e_length="843"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2245" stop="2891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2245" stop="2889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2416" stop="3087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTTACAGTTCAGTAGTGGGGCAAAGAAAACAACAGCTCATCATAAAAGATAAGTTTTCTACCAACAAAAAAAATATTATTGTGGTTGGTCTTATTTGTCTAATGTCTTTTTCGTTGTTTAATTTAATTTACTTCTCTTGTCTCTACTTGTTTTTGTCTTTATGCACTGTAAATACAATATCCATTTTTTTTGTGTGATA</gDNA_template>
            <first_frame> F  F  L  P  P  P  S  L  I  T  S  Q  C  I  N  P  Y  F  N  G  R  F  *  I  S  S  R  I  S  T  N  A  K  Y  R  Y  F  R  N  A  I  S  T  T  *  P  L  F  L  L  P  I  F  P  F  S  E  S  I  N  K  I  R  *  V  *  L  V  A  *  V  T  *  R  C  G  *  G  G  I  C  M  G  *  R  N  Q  R  F  E  E  A  S  *  M  V  G  D  R  R  R  T  *  M  E  D  F  H  P  S  V  P  S  E  Q  K  R  *  *  E  C  E  I  P  I  R  S  F  E  L  L  T  E  L  R  *  R  T  R  E  *  R  R  R  G  G  G  I  G  T  S  E  F  L  D  E  I  R  I  D  S  G  V  *  *  L  G  Q  R  W  A  Q  F  R  L  S  C  K  R  K  Y  Y  T  I  *  Q  *  L  D  W  T  D  R  *  I  Y  I  I  V  N  H  K  L  V  S  A  Y  N  F  E  T  I  Q  S  P  L  Q  F  S  S  G  A  K  K  T  T  A  H  H  K  R  *  V  F  Y  Q  Q  K  K  Y  Y  C  G  W  S  Y  L  S  N  V  F  F  V  V  *  F  N  L  L  L  L  S  L  L  V  F  V  F  M  H  C  K  Y  N  I  H  F  F  C  V  I </first_frame>
            <second_frame>  F  F  F  L  L  L  L  *  S  P  A  N  A  L  T  H  I  S  M  A  G  S  E  F  P  H  A  Y  P  Q  T  P  S  I  D  T  S  E  T  L  F  Q  R  R  S  R  C  F  C  F  P  S  F  R  S  P  N  Q  L  T  K  Y  V  K  F  D  W  W  H  R  L  R  S  G  A  V  K  E  G  S  V  W  A  K  G  I  N  A  L  K  K  L  R  E  W  S  E  I  V  A  G  P  R  W  K  T  F  I  R  R  F  H  R  N  K  S  G  N  R  N  A  K  F  Q  Y  D  P  L  S  Y  S  L  N  F  D  E  G  R  G  N  N  G  E  E  E  E  E  L  V  L  R  N  F  S  T  R  Y  A  S  I  P  A  S  S  N  L  G  K  D  G  P  S  F  V  *  V  A  N  A  S  T  I  L  F  D  S  D  W  T  G  P  I  D  K  F  I  L  S  S  I  I  N  *  S  Q  R  I  I  S  R  Q  F  N  P  P  Y  S  S  V  V  G  Q  R  K  Q  Q  L  I  I  K  D  K  F  S  T  N  K  K  N  I  I  V  V  G  L  I  C  L  M  S  F  S  L  F  N  L  I  Y  F  S  C  L  Y  L  F  L  S  L  C  T  V  N  T  I  S  I  F  F  V  *   </second_frame>
            <third_frame>   F  S  S  S  S  F  S  N  H  Q  P  M  H  *  P  I  F  Q  W  Q  V  L  N  F  L  T  H  I  H  K  R  Q  V  S  I  L  P  K  R  Y  F  N  D  V  A  V  V  S  A  S  H  L  S  V  L  R  I  N  *  Q  N  T  L  S  L  T  G  G  I  G  Y  V  A  V  R  L  R  R  D  L  Y  G  L  K  E  S  T  L  *  R  S  F  V  N  G  R  R  S  S  P  D  L  D  G  R  L  S  S  V  G  S  I  G  T  K  A  V  I  G  M  R  N  S  N  T  I  L  *  V  T  H  *  T  S  M  K  D  E  G  I  T  E  K  R  R  R  N  W  Y  F  G  I  S  R  R  D  T  H  R  F  R  R  L  V  T  W  A  K  M  G  P  V  S  F  E  L  Q  T  Q  V  L  Y  Y  L  T  V  I  G  L  D  R  S  I  N  L  Y  Y  R  Q  S  *  I  S  L  S  V  *  F  R  D  N  S  I  P  L  T  V  Q  *  W  G  K  E  N  N  S  S  S  *  K  I  S  F  L  P  T  K  K  I  L  L  W  L  V  L  F  V  *  C  L  F  R  C  L  I  *  F  T  S  L  V  S  T  C  F  C  L  Y  A  L  *  I  Q  Y  P  F  F  L  C  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2270" stop="2770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPANALTHISMAGSEFPHAYPQTPSIDTSETLFQRRSRCFCFPSFRSPNQLTKYVKFDWWHRLRSGAVKEGSVWAKGINALKKLREWSEIVAGPRWKTFIRRFHRNKSGNRNAKFQYDPLSYSLNFDEGRGNNGEEEEELVLRNFSTRYASIPASSNLGKDGPSFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2855" stop="3085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQRIISRQFNPPYSSVVGQRKQQLIIKDKFSTNKKNIIVVGLICLMSFSLFNLIYFSCLYLFLSLCTVNTISIFFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9064" PGL_stop="5451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9064" e_stop="6516"/>
            <exon e_start="5918" e_stop="5451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="9064" e_stop="6516" e_length="2549"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6515" i_stop="5919" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5918" e_stop="5451" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9064" stop="8523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8937" stop="8193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8740" stop="7993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8481" stop="7764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8295" stop="7494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="7342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="7361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7534" stop="6918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7240" stop="6821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7232" stop="6705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7219" stop="6516"/>
              <exon start="5918" stop="5743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7148" stop="6728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6963" stop="6516"/>
              <exon start="5918" stop="5554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6954" stop="6516"/>
              <exon start="5918" stop="5665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6954" stop="6516"/>
              <exon start="5918" stop="5777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6793" stop="6516"/>
              <exon start="5918" stop="5475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6740" stop="6516"/>
              <exon start="5918" stop="5484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6594" stop="6516"/>
              <exon start="5918" stop="5489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6555" stop="6516"/>
              <exon start="5918" stop="5451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6545" stop="6516"/>
              <exon start="5918" stop="5575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5871" stop="5451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCTCCCCAAGGAGATAGCCCTTCAGGTGGGGAGACCTGCACAGGTGATGAGCTTAAGCCAAAGACATCTCCTGTAGATAGTTCTTCAGGTAACCATAGTGGGCGAAATGACGGTGATGCTAATGGTGATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGCAGAAGTGAGGAGGGACTTTGATTTGAATAATGGGCCTGGTGTTGATGATTCATGTGCAGAACAGCCTCTATTCCACCAGAGTCATCAGGGAAACATGCGCTCCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAG : TTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</gDNA_template>
            <first_frame> L  F  L  P  K  E  I  A  L  Q  V  G  R  P  A  Q  V  M  S  L  S  Q  R  H  L  L  *  I  V  L  Q  V  T  I  V  G  E  M  T  V  M  L  M  V  I  K  R  N  S  S  L  L  L  I  R  R  G  L  R  V  K  Y  M  L  I  E  V  Q  *  R  I  L  T  E  K  E  G  P  L  H  L  L  L  K  K  Q  P  R  E  S  A  L  I  H  P  A  L  I  H  R  W  L  E  I  *  N  Q  V  L  M  R  S  *  L  R  W  Q  S  L  L  R  L  L  A  M  Y  S  K  K  Q  V  M  V  N  R  A  D  N  S  M  R  K  K  *  F  P  L  R  H  L  I  M  F  *  M  A  N  Q  V  D  M  V  V  Q  *  E  R  T  K  S  L  M  A  L  *  A  *  K  A  *  N  D  Q  L  E  F  L  L  L  N  M  R  A  T  T  K  M  M  *  V  G  C  *  V  L  L  V  Q  R  *  N  R  L  Q  L  W  *  N  L  K  L  Q  K  E  V  T  R  K  S  C  N  K  L  V  L  V  E  T  L  L  Q  G  K  V  D  I  L  M  K  W  M  Q  I  V  F  *  S  Q  N  S  Q  I  L  I  K  R  L  L  I  L  Q  L  L  R  I  K  P  H  L  N  V  I  *  L  *  G  I  *  Q  R  M  N  L  K  L  K  R  *  R  S  M  I  L  A  V  D  Y  L  L  R  K  R  H  L  D  F  L  M  Q  K  W  K  I  W  N  Q  E  N  L  N  T  L  V  *  R  Q  I  D  Q  R  N  A  Y  P  S  K  G  K  I  L  Q  A  L  L  L  L  P  Q  I  Q  L  Q  R  *  S  L  T  *  M  K  V  L  F  L  M  R  G  N  M  G  S  Q  S  T  R  Q  A  L  G  V  C  R  M  S  K  *  *  A  H  Q  H  L  L  S  L  L  F  P  V  A  F  L  L  P  L  R  W  L  L  L  P  K  D  L  L  S  H  Q  K  I  Y  *  E  S  K  G  S  L  D  G  K  D  Q  Q  P  Q  V  H  F  V  R  L  S  Q  E  N  P  L  T  C  I  Q  I  P  *  P  S  L  L  L  K  L  P  P  A  S  M  V  D  L  H  *  I  L  I  *  M  *  L  M  K  E  F  W  R  I  *  I  L  R  I  V  L  *  Q  *  V  L  R  W  T  I  *  L  I  L  F  H  Q  K  I  N  V  Q  A  L  F  V  V  L  E  D  L  I  S  I  *  I  E  L  M  N  L  M  M  *  V  N  A  P  *  V  A  V  I  D  *  R  V  L  F  F  P  Q  E  H  L  H  P  V  S  C  Q  L  Q  K  *  G  G  T  L  I  *  I  M  G  L  V  L  M  I  H  V  Q  N  S  L  Y  S  T  R  V  I  R  E  T  C  A  P  N  *  M  L  L  A  S  E  *  T  I  Q  K  W  E  T  Y  H  L  G  L  L  Q  G  I  V  T  Q  R  *  Q  F  H  Q  C  C  L  I  G  G  S  S  H  H  F  Q  *  S  H  P  V  P  R  E  C  *  V  H  L  L  L  V  P  L  I  L  Q  M  F  S  G  V  R  Y  C  H  H  H  L  L  C  L  F  P  L  P  H  S  S  I  L  C  S  L  L  E  L  L  S  H  F  P  L  E  H  M  L  L  D  Q  P  L  I  L  I  H  P  R  V  E  D  F  S  L  R  L  *  I  H  S  C  *  V  L  W  H  L  N  T  Q  G  L  I  W  F  P  F  P  M  L  T  A  M  E  P  P  T  T  T  E  N  G  A  G  K  V  W  I  *  M  Q  V  L  E  L  W  T  W  K  G  K  K  S  Q  F  R  W  *  R  G  N  W  T  S  M  G  G  C  I  L  *  L  E  V  Y  *  R  G  R  N  P  R  E  D  G  T  V  R  V  T  G  S  S  N  H  R  G  S  R  N  A  K  K  P  A  T  W  R  S  *  S :   C  Q  R  M  D  Y  G  G  L  L  T  S  I  S  F  *  Y  A  L  V  V  V  *  C  D  Q  *  C  V  Q  S  P  T  T  I  S  L  N  V  *  K  E  G  G  F  Q  W  V  C  E  H  F  C  Q  P  Y  C  L  G  G  D  R  *  V  F  P  L  *  I  F  *  L  L  E  G  L  R  S  A  T  P  G  N  C  G  *  V  V  L  S  L  A  K  I  L  P  V  E  V  G  F  L  D  R  V  K  W  N  A  F  Y  V  L  C  C  *  *  S  F  L  L  P  T  F  L  A  V  L  S  S  F  L  A  I  T  *  V  *  R  G  *  H  Q  I  L  V  L  K  C  P  P  A  M  L  L   </first_frame>
            <second_frame>  C  F  S  P  R  R  *  P  F  R  W  G  D  L  H  R  *  *  A  *  A  K  D  I  S  C  R  *  F  F  R  *  P  *  W  A  K  *  R  *  C  *  W  *  *  R  E  T  V  R  C  C  *  Y  V  V  V  *  G  *  S  T  C  *  *  K  C  N  D  G  F  *  Q  R  K  K  A  L  F  I  S  F  *  R  N  N  H  G  R  V  L  *  F  I  L  H  *  F  T  D  G  W  K  F  E  I  R  C  *  *  E  V  S  *  D  G  K  V  C  C  G  S  L  Q  C  I  R  K  S  K  *  W  *  T  E  Q  T  I  P  *  G  K  S  N  F  H  *  D  T  *  *  C  S  R  W  R  I  R  W  T  W  *  F  N  R  R  G  Q  S  H  *  W  P  C  K  H  R  R  L  E  T  T  S  W  N  F  C  F  *  I  *  G  R  R  Q  K  *  C  E  *  G  V  R  C  C  *  Y  R  G  E  T  A  F  S  C  G  E  I  *  S  Y  R  K  R  *  Q  G  R  V  A  T  N  W  F  *  S  R  H  Y  C  R  E  R  W  T  F  *  *  N  G  C  K  *  C  F  K  V  R  T  A  K  F  *  *  K  D  C  *  Y  F  S  Y  *  G  *  S  R  I  *  M  *  F  S  Y  K  E  F  D  K  G  *  T  *  S  *  R  D  D  E  A  *  F  W  Q  W  I  T  Y  *  E  R  D  T  W  I  F  *  C  R  S  G  K  F  G  I  K  R  I  *  I  L  W  C  R  G  R  *  T  K  G  M  R  I  H  Q  R  G  K  F  F  K  L  C  C  C  C  P  R  F  S  F  K  D  E  V  *  L  K  *  R  F  Y  F  *  *  G  E  I  W  G  V  N  Q  L  D  R  P  W  V  F  V  E  C  P  N  N  E  P  I  N  I  C  C  L  F  C  F  Q  *  P  S  C  F  H  Y  G  G  C  C  C  Q  R  T  F  C  P  T  R  R  S  I  E  S  Q  R  G  V  W  M  E  R  I  S  S  H  K  C  I  S  S  G  *  A  K  K  T  P  *  H  A  F  K  F  H  D  H  L  C  Y  *  S  F  L  Q  Q  A  W  S  T  S  I  R  Y  *  S  E  C  S  *  *  K  S  F  G  G  Y  K  F  S  G  L  C  F  S  N  R  F  C  G  G  P  Y  N  *  S  C  F  I  K  K  *  M  F  R  P  S  S  *  F  W  R  T  *  S  R  F  E  *  S  *  *  T  *  *  C  R  S  M  L  L  E  *  Q  S  *  I  R  G  C  C  F  S  R  K  S  I  F  I  Q  Y  L  A  N  C  R  S  E  E  G  L  *  F  E  *  W  A  W  C  *  *  F  M  C  R  T  A  S  I  P  P  E  S  S  G  K  H  A  L  P  T  K  C  F  *  P  Q  N  E  Q  S  R  N  G  K  L  I  I  L  V  C  S  R  E  *  L  L  N  D  D  N  S  I  N  V  A  *  S  G  G  A  A  T  I  S  N  N  P  T  R  C  P  A  N  V  R  S  I  C  C  W  F  P  L  Y  S  R  C  F  Q  G  F  G  I  V  I  I  T  C  Y  A  F  S  R  C  P  I  P  V  S  C  V  P  F  W  N  Y  F  P  T  S  L  W  N  I  C  C  W  I  N  L  L  Y  *  F  I  L  G  W  K  T  F  H  S  A  Y  K  F  T  V  A  R  C  C  G  T  S  I  P  K  A  L  Y  G  F  P  S  R  C  *  Q  Q  W  S  H  R  P  Q  Q  K  T  E  P  A  R  S  G  S  E  C  R  S  W  S  C  G  L  G  R  E  R  R  V  S  F  V  G  N  E  A  T  G  R  A  W  E  D  V  S  C  S  W  R  S  T  E  E  E  G  T  R  G  R  M  G  Q  *  E  L  Q  V  Q  A  I  T  V  A  V  G  M  Q  K  N  L  Q  L  G  D  L  E   : V  V  K  G  W  T  M  V  G  S  S  Q  V  S  A  S  S  M  L  L  W  L  C  D  V  T  N  D  V  F  S  P  Q  P  L  F  L  S  M  Y  E  R  K  E  D  F  N  G  F  V  S  T  F  V  N  R  I  V  W  V  E  T  D  E  S  S  L  C  K  Y  F  N  C  W  K  A  *  D  L  Q  H  P  A  T  A  D  K  L  S  Y  R  W  P  R  Y  C  Q  W  R  L  D  F  W  T  E  *  N  G  M  P  S  M  F  F  V  A  N  D  L  S  C  S  L  L  S  W  L  F  S  P  L  F  W  Q  L  H  K  Y  K  E  V  D  T  K  F  W  Y  *  S  V  H  L  P  C  F  Y  </second_frame>
            <third_frame>   V  S  P  Q  G  D  S  P  S  G  G  E  T  C  T  G  D  E  L  K  P  K  T  S  P  V  D  S  S  S  G  N  H  S  G  R  N  D  G  D  A  N  G  D  K  E  K  Q  F  V  V  A  N  T  S  W  S  E  G  K  V  H  A  N  R  S  A  M  T  D  F  N  R  E  R  R  P  S  S  S  P  S  E  E  T  T  T  G  E  C  F  N  S  S  C  T  D  S  Q  M  A  G  N  L  K  S  G  V  N  E  K  L  V  E  M  A  K  S  A  A  A  P  C  N  V  F  E  K  A  S  D  G  E  Q  S  R  Q  F  H  E  E  K  V  I  S  T  K  T  L  D  N  V  L  D  G  E  S  G  G  H  G  S  S  I  G  E  D  K  V  T  N  G  L  V  S  I  E  G  L  K  R  P  V  G  I  S  A  F  K  Y  E  G  D  D  K  N  D  V  S  R  V  L  G  V  A  S  T  E  V  K  P  P  S  V  V  V  K  S  E  A  T  E  R  G  D  K  E  E  L  Q  Q  T  G  S  S  R  D  T  I  A  G  K  G  G  H  S  D  E  M  D  A  N  S  V  L  K  S  E  Q  P  N  S  D  K  K  T  V  D  T  S  V  I  E  D  K  A  A  S  E  C  N  L  A  I  R  N  L  T  K  D  E  P  K  A  E  E  M  T  K  H  D  S  G  S  G  L  L  T  K  K  E  T  P  G  F  S  N  A  E  V  E  N  L  E  S  R  E  S  K  Y  S  G  V  E  A  D  R  P  K  E  C  V  S  I  K  G  E  N  S  S  S  S  A  A  A  A  P  D  S  A  S  K  M  K  F  D  L  N  E  G  F  I  S  D  E  G  K  Y  G  E  S  I  N  S  T  G  P  G  C  L  S  N  V  Q  I  M  S  P  S  T  F  A  V  S  S  V  S  S  S  L  P  A  S  I  T  V  A  A  A  A  K  G  P  F  V  P  P  E  D  L  L  R  V  K  G  E  F  G  W  K  G  S  A  A  T  S  A  F  R  P  A  E  P  R  K  P  P  D  M  H  S  N  S  M  T  I  S  V  T  E  A  S  S  S  K  H  G  R  P  P  L  D  I  D  L  N  V  A  D  E  R  V  L  E  D  I  N  S  Q  D  C  A  L  A  I  G  S  A  V  D  H  I  T  N  L  V  S  S  K  N  K  C  S  G  P  L  R  S  F  G  G  L  D  L  D  L  N  R  V  D  E  P  N  D  V  G  Q  C  S  L  S  S  S  H  R  L  E  G  A  V  F  P  A  R  A  S  S  S  S  I  L  P  T  A  E  V  R  R  D  F  D  L  N  N  G  P  G  V  D  D  S  C  A  E  Q  P  L  F  H  Q  S  H  Q  G  N  M  R  S  Q  L  N  A  S  S  L  R  M  N  N  P  E  M  G  N  L  S  S  W  F  A  P  G  N  S  Y  S  T  M  T  I  P  S  M  L  P  D  R  G  E  Q  P  P  F  P  I  I  P  P  G  A  P  R  M  L  G  P  S  A  A  G  S  P  Y  T  P  D  V  F  R  G  S  V  L  S  S  S  P  A  M  P  F  P  A  A  P  F  Q  Y  P  V  F  P  F  G  T  T  F  P  L  P  S  G  T  Y  A  V  G  S  T  S  Y  I  D  S  S  S  G  G  R  L  F  T  P  P  I  N  S  Q  L  L  G  A  V  A  P  Q  Y  P  R  P  Y  M  V  S  L  P  D  A  N  S  N  G  A  T  D  H  N  R  K  R  S  R  Q  G  L  D  L  N  A  G  P  G  A  V  D  L  E  G  K  E  E  S  V  S  L  V  T  R  Q  L  D  E  H  G  R  M  Y  P  V  A  G  G  L  L  K  R  K  E  P  E  G  G  W  D  S  E  S  Y  R  F  K  Q  S  P  W  Q  *  E  C  K  K  T  C  N  L  A  I  L  K  :  L  S  K  D  G  L  W  W  A  P  H  K  Y  Q  L  L  V  C  S  C  G  C  V  M  *  P  M  M  C  S  V  P  N  H  Y  F  S  Q  C  M  K  G  R  R  I  S  M  G  L  *  A  L  L  S  T  V  L  S  G  W  R  Q  M  S  L  P  S  V  N  I  L  T  V  G  R  L  E  I  C  N  T  R  Q  L  R  I  S  C  L  I  V  G  Q  D  I  A  S  G  G  W  I  S  G  Q  S  K  M  E  C  L  L  C  S  L  L  L  M  I  F  L  A  P  Y  F  L  G  C  S  L  L  F  F  G  N  Y  I  S  I  K  R  L  T  P  N  F  G  T  K  V  S  T  C  H  A  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9062" stop="6552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2508</number_coding_nucleotides>
                  <number_encoded_amino_acids>836</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSPQGDSPSGGETCTGDELKPKTSPVDSSSGNHSGRNDGDANGDKEKQFVVANTSWSEGKVHANRSAMTDFNRERRPSSSPSEETTTGECFNSSCTDSQMAGNLKSGVNEKLVEMAKSAAAPCNVFEKASDGEQSRQFHEEKVISTKTLDNVLDGESGGHGSSIGEDKVTNGLVSIEGLKRPVGISAFKYEGDDKNDVSRVLGVASTEVKPPSVVVKSEATERGDKEELQQTGSSRDTIAGKGGHSDEMDANSVLKSEQPNSDKKTVDTSVIEDKAASECNLAIRNLTKDEPKAEEMTKHDSGSGLLTKKETPGFSNAEVENLESRESKYSGVEADRPKECVSIKGENSSSSAAAAPDSASKMKFDLNEGFISDEGKYGESINSTGPGCLSNVQIMSPSTFAVSSVSSSLPASITVAAAAKGPFVPPEDLLRVKGEFGWKGSAATSAFRPAEPRKPPDMHSNSMTISVTEASSSKHGRPPLDIDLNVADERVLEDINSQDCALAIGSAVDHITNLVSSKNKCSGPLRSFGGLDLDLNRVDEPNDVGQCSLSSSHRLEGAVFPARASSSSILPTAEVRRDFDLNNGPGVDDSCAEQPLFHQSHQGNMRSQLNASSLRMNNPEMGNLSSWFAPGNSYSTMTIPSMLPDRGEQPPFPIIPPGAPRMLGPSAAGSPYTPDVFRGSVLSSSPAMPFPAAPFQYPVFPFGTTFPLPSGTYAVGSTSYIDSSSGGRLFTPPINSQLLGAVAPQYPRPYMVSLPDANSNGATDHNRKRSRQGLDLNAGPGAVDLEGKEESVSLVTRQLDEHGRMYPVAGGLLKRKEPEGGWDSESYRFKQSPWQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5768" stop="5451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLSTVLSGWRQMSLPSVNILTVGRLEICNTRQLRISCLIVGQDIASGGWISGQSKMECLLCSLLLMIFLAPYFLGCSLLFFGNYISIKRLTPNFGTKVSTCHAFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10033" PGL_stop="9330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10033" e_stop="9330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="10033" e_stop="9330" e_length="704"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10033" stop="9330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACACCAGTGGAAACTAATATGAAGTCTGCATGCTCTTCTCCAGGCCCAATAAAACAAGCATCACCTCCTTCATCCGGAAAAGTGGGTCAGCCAAGAATTTCAGCTTTTGGTTCCAGTGATGTTCCTCTGGCTAGGGAAGATAAGAGCAGCAGTTCTAGTCAGTCTCACAATCACAGTCAGTCCTTATCAGGGAAGGAGGATGCAAGGAGTTCAACTGCTGTTTCAATGAGCAGCATCAAGATCTCTAGTGGTGGTTCTCGGCACCGCAAGTCGATAAATGGTGGTCCTGGACCATCGGTTTCTGCAGGTCAAAAAGAAGGTTCTACAAACAGAAGTTCTTCATTGCACCGGAATCCTACCACTGAGAAGTCGCTGCAGTCTGCATTGAGTGGTGAAAAAACGGTTGATGTGCCAGCTGTAGAAGGGAGTTGTCACAAATTGATAGTAAAGATACCAAACAAAGGCCGCAGTCCTGCGCGGAGTGTCAGTGGAGGATCATGTGAAGACCCTTCAATCATGAGCAGCCGAGCTTCTTCTCCTGTGCTTTCTGAAAAGAATGATCAGCTTGATCGTAATTCTAAGGAGAAGAAAGATGCATATCGATCAGATGTTACTATTAACGTGAATACAGAATCATGGCAGAGCAATGTTTTGAAAGATGTACTCACTGGATCTGATGAGGGTGATGGATCACCTGTTGCT</gDNA_template>
            <first_frame> L  H  Q  W  K  L  I  *  S  L  H  A  L  L  Q  A  Q  *  N  K  H  H  L  L  H  P  E  K  W  V  S  Q  E  F  Q  L  L  V  P  V  M  F  L  W  L  G  K  I  R  A  A  V  L  V  S  L  T  I  T  V  S  P  Y  Q  G  R  R  M  Q  G  V  Q  L  L  F  Q  *  A  A  S  R  S  L  V  V  V  L  G  T  A  S  R  *  M  V  V  L  D  H  R  F  L  Q  V  K  K  K  V  L  Q  T  E  V  L  H  C  T  G  I  L  P  L  R  S  R  C  S  L  H  *  V  V  K  K  R  L  M  C  Q  L  *  K  G  V  V  T  N  *  *  *  R  Y  Q  T  K  A  A  V  L  R  G  V  S  V  E  D  H  V  K  T  L  Q  S  *  A  A  E  L  L  L  L  C  F  L  K  R  M  I  S  L  I  V  I  L  R  R  R  K  M  H  I  D  Q  M  L  L  L  T  *  I  Q  N  H  G  R  A  M  F  *  K  M  Y  S  L  D  L  M  R  V  M  D  H  L  L   </first_frame>
            <second_frame>  Y  T  S  G  N  *  Y  E  V  C  M  L  F  S  R  P  N  K  T  S  I  T  S  F  I  R  K  S  G  S  A  K  N  F  S  F  W  F  Q  *  C  S  S  G  *  G  R  *  E  Q  Q  F  *  S  V  S  Q  S  Q  S  V  L  I  R  E  G  G  C  K  E  F  N  C  C  F  N  E  Q  H  Q  D  L  *  W  W  F  S  A  P  Q  V  D  K  W  W  S  W  T  I  G  F  C  R  S  K  R  R  F  Y  K  Q  K  F  F  I  A  P  E  S  Y  H  *  E  V  A  A  V  C  I  E  W  *  K  N  G  *  C  A  S  C  R  R  E  L  S  Q  I  D  S  K  D  T  K  Q  R  P  Q  S  C  A  E  C  Q  W  R  I  M  *  R  P  F  N  H  E  Q  P  S  F  F  S  C  A  F  *  K  E  *  S  A  *  S  *  F  *  G  E  E  R  C  I  S  I  R  C  Y  Y  *  R  E  Y  R  I  M  A  E  Q  C  F  E  R  C  T  H  W  I  *  *  G  *  W  I  T  C  C  </second_frame>
            <third_frame>   T  P  V  E  T  N  M  K  S  A  C  S  S  P  G  P  I  K  Q  A  S  P  P  S  S  G  K  V  G  Q  P  R  I  S  A  F  G  S  S  D  V  P  L  A  R  E  D  K  S  S  S  S  S  Q  S  H  N  H  S  Q  S  L  S  G  K  E  D  A  R  S  S  T  A  V  S  M  S  S  I  K  I  S  S  G  G  S  R  H  R  K  S  I  N  G  G  P  G  P  S  V  S  A  G  Q  K  E  G  S  T  N  R  S  S  S  L  H  R  N  P  T  T  E  K  S  L  Q  S  A  L  S  G  E  K  T  V  D  V  P  A  V  E  G  S  C  H  K  L  I  V  K  I  P  N  K  G  R  S  P  A  R  S  V  S  G  G  S  C  E  D  P  S  I  M  S  S  R  A  S  S  P  V  L  S  E  K  N  D  Q  L  D  R  N  S  K  E  K  K  D  A  Y  R  S  D  V  T  I  N  V  N  T  E  S  W  Q  S  N  V  L  K  D  V  L  T  G  S  D  E  G  D  G  S  P  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10031" stop="9330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPVETNMKSACSSPGPIKQASPPSSGKVGQPRISAFGSSDVPLAREDKSSSSSQSHNHSQSLSGKEDARSSTAVSMSSIKISSGGSRHRKSINGGPGPSVSAGQKEGSTNRSSSLHRNPTTEKSLQSALSGEKTVDVPAVEGSCHKLIVKIPNKGRSPARSVSGGSCEDPSIMSSRASSPVLSEKNDQLDRNSKEKKDAYRSDVTINVNTESWQSNVLKDVLTGSDEGDGSPVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15324" PGL_stop="15064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15324" e_stop="15064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="15324" e_stop="15064" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15324" stop="15064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGCAGAAGTTGTATGAGCGATCCATCCGAATGAGGACAAGATTCAAGCTTAGCTTCTTATATTCTTTCTATGTGATAGATGTGAAAACCAAACAAGACTGGTGTTTGATGATATGTAAGTTGGCTTCATGTTATATAAACGTGAGAATCATTAAATTAGTGGTCATTGTTTGGCACAAAATCTGGCGTCAACGTGTGTGTATTATATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCAGTTTTTTTTACAAGG</gDNA_template>
            <first_frame> G  A  E  V  V  *  A  I  H  P  N  E  D  K  I  Q  A  *  L  L  I  F  F  L  C  D  R  C  E  N  Q  T  R  L  V  F  D  D  M  *  V  G  F  M  L  Y  K  R  E  N  H  *  I  S  G  H  C  L  A  Q  N  L  A  S  T  C  V  Y  Y  I  K  R  H  G  Q  V  V  H  V  Y  E  S  V  F  F  T  R </first_frame>
            <second_frame>  V  Q  K  L  Y  E  R  S  I  R  M  R  T  R  F  K  L  S  F  L  Y  S  F  Y  V  I  D  V  K  T  K  Q  D  W  C  L  M  I  C  K  L  A  S  C  Y  I  N  V  R  I  I  K  L  V  V  I  V  W  H  K  I  W  R  Q  R  V  C  I  I  *  K  D  M  G  K  *  S  M  C  M  S  Q  F  F  L  Q   </second_frame>
            <third_frame>   C  R  S  C  M  S  D  P  S  E  *  G  Q  D  S  S  L  A  S  Y  I  L  S  M  *  *  M  *  K  P  N  K  T  G  V  *  *  Y  V  S  W  L  H  V  I  *  T  *  E  S  L  N  *  W  S  L  F  G  T  K  S  G  V  N  V  C  V  L  Y  K  K  T  W  A  S  S  P  C  V  *  V  S  F  F  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15323" stop="15114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQKLYERSIRMRTRFKLSFLYSFYVIDVKTKQDWCLMICKLASCYINVRIIKLVVIVWHKIWRQRVCII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24957" PGL_stop="34074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24957" e_stop="25066"/>
            <exon e_start="26710" e_stop="26807"/>
            <exon e_start="26917" e_stop="27090"/>
            <exon e_start="28173" e_stop="28273"/>
            <exon e_start="28520" e_stop="28595"/>
            <exon e_start="28676" e_stop="28735"/>
            <exon e_start="29768" e_stop="29952"/>
            <exon e_start="31027" e_stop="31123"/>
            <exon e_start="31493" e_stop="31579"/>
            <exon e_start="32811" e_stop="32869"/>
            <exon e_start="32955" e_stop="33046"/>
            <exon e_start="33155" e_stop="33232"/>
            <exon e_start="33342" e_stop="33502"/>
            <exon e_start="33592" e_stop="34074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.272" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24957" e_stop="25066" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26710" e_stop="26807" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26917" e_stop="27090" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.980">
            <gDNA_intron_boundary i_start="27091" i_stop="28172" i_length="1082"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28173" e_stop="28273" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.884">
            <gDNA_intron_boundary i_start="28274" i_stop="28519" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28520" e_stop="28595" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28596" i_stop="28675" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28676" e_stop="28735" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28736" i_stop="29767" i_length="1032"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29768" e_stop="29952" e_length="185"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29953" i_stop="31026" i_length="1074"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31027" e_stop="31123" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31493" e_stop="31579" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="32811" e_stop="32869" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="32955" e_stop="33046" e_length="92"/>
          </exon>
          <intron i_serial="11" don_prob="0.956" acc_prob="0.933">
            <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33155" e_stop="33232" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.272" acc_prob="0.973">
            <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="33342" e_stop="33502" e_length="161"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="0.992">
            <gDNA_exon_boundary e_start="33592" e_stop="34074" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27090"/>
              <exon start="28173" stop="28273"/>
              <exon start="28520" stop="28595"/>
              <exon start="28676" stop="28735"/>
              <exon start="29768" stop="29853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27090"/>
              <exon start="28173" stop="28273"/>
              <exon start="28520" stop="28595"/>
              <exon start="28676" stop="28735"/>
              <exon start="29768" stop="29780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="26978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24958" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27090"/>
              <exon start="28173" stop="28215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24960" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28705" stop="28735"/>
              <exon start="29768" stop="29952"/>
              <exon start="31027" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31027" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="33601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32855" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33175" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33188" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33760" stop="34055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33760" stop="34055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC : CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT : GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG : AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG : GTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG : GTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAG : TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG : GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG : GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT : GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG : GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG : GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG : TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</gDNA_template>
            <first_frame> W  R  R  R  S  S  S  S  S  K  G  K  *  T  S  A  T  S  T  K  R  S  A  S  *  C  F  L  L  H  Y  *  S  S  P  M  A :   *  S  Y  S  S  W  I  S  A  L  S  C  Y  A  W  Y  H  C  Y  H  S  Y  S  S  S  S  P  N  G  R  W  K   : *  G  K  S  P  S  Y  S  D  I  A  I  R  R  W  A  E  H  L  V  A  V  Y  L  W  D  *  I  A  C  C  D  W  R  V  L  Y  L  C  C  T  Y  N  L  D  Y  P  F  W  T  M  E  *  *  R  S  C  V   : E  I  Q  E  D  N  A  G  H  P  R  C  P  Y  C  C  F  N  P  S  D  C  P  R  L  Q  W  S  L  A  Q  C  Y  K  :  V  S  E  S  T  F  S  C  S  F  G  F  S  C  W  L  W  S  L  *  V  W  F  S  W   : G  C  Q  M  C  *  N  W  V  A  R  A  S  P  F  S  H  F  L  S   : V  S  G  T  P  D  T  S  R  E  E  Y  I  *  S  F  C  C  S  F  H  G  D  H  C  M  D  L  C  T  P  T  H  C  G  R  G  L  Q  W  K  A  T  E  D  T  S  K  L  Q  N  *  P  C  W  T  H  *  W  C  S  M  :  D  *  Y  S  L  P  F  P  M  G  T  S  F  I  Q  C  W  *  S  I  C  Y  D  D  G  *  F  C  C  S  S  R   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A   : G  S  W  H  S  T  I  R  I  I  W  H  W  E  W  I  F  C  I  R  :  G  E  C  W  S  I  S  I  D  T  C  W  Q  *  K  S  C  S  D  I  C  C  V  H  D  F  L  F  N  S  R :   E  I  W  S  C  L  C  F  N  S  C  T  Y  C  W  C  F  I  L  P  F  L  R  L  C  R :   R  W  R  L  R  F  S  S  V  L  Q  S  *  *  F  P  H  Q  V  Y  I  R  F  L  R  L  S  W  L  V  H  S  T  V  L  Q  *  V  Y  C  C  C  W  L  W  T  C  S  H  T  C  K  M   : V  Q  R  H  G  Q  R  S  L  S  I  K  S  F  C  G  G  Y  R  C  L  F  P  G  Q  H  N  A  Q  K  G  W  P  D  K  K  G  Q  R  Q  A  L  V  G  Q  I  Q  V  L  Q  D  *  H  E  K  *  G  I  L  L  P  P  F  Q  S  E  Q  V  F  P  I  C  V  I  W  R  R  H  G  H  K  G  F  I  F  L  L  V  S  T  R  V  H  L  C  L  L  E  R  G  G  G  R  L  L  L  Q  H  Q  F  S  S  F  M  R  N  E  V  *  R  S  L  E  Q  Q  L  L  V  *  V  F  P  T  V  V  N  L  W  I  I  W  I  Q  L  *  L  A  I  E  Q  A  I  L  L  *  I  I  I  S  S  K  </first_frame>
            <second_frame>  G  G  G  G  A  A  P  A  A  K  A  S  E  P  V  P  H  P  P  K  D  Q  L  P  N  V  S  Y  C  I  T  S  P  P  P  W   : P  E  A  I  L  L  G  F  Q  H  Y  L  V  M  L  G  T  I  V  I  I  P  T  A  L  V  P  Q  M  G  G  G  N  :  E  E  K  A  Q  V  I  Q  T  S  L  F  V  A  G  L  N  T  L  L  Q  S  I  F  G  T  R  L  P  A  V  I  G  G  S  Y  T  F  V  A  P  T  I  S  I  I  L  S  G  Q  W  N  D  E  D  P  V  S  :  K  F  K  K  I  M  R  A  T  Q  G  A  L  I  V  A  S  T  L  Q  I  V  L  G  F  S  G  L  W  R  N  V  T  R :   F  L  S  P  L  S  A  V  P  L  V  S  L  V  G  F  G  L  Y  E  F  G  F  P  G  :  V  A  K  C  V  E  I  G  L  P  E  L  V  L  L  V  I  F  S  Q  :  Y  L  A  H  L  I  R  P  G  K  N  I  F  D  R  F  A  V  L  F  T  V  I  I  V  W  I  Y  A  H  L  L  T  V  G  G  A  Y  N  G  K  P  P  K  T  Q  A  S  C  R  T  D  R  A  G  L  I  S  G  A  Q  W :   I  S  I  P  Y  P  F  Q  W  G  P  P  S  F  N  A  G  E  A  F  A  M  M  M  A  S  F  V  A  L  V  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q  :  G  V  G  I  L  L  S  G  L  F  G  T  G  N  G  S  S  V  S  V :   E  N  A  G  L  L  A  L  T  R  V  G  S  R  R  V  V  Q  I  S  A  A  F  M  I  F  F  S  I  L   : G  K  F  G  A  V  F  A  S  I  P  A  P  I  V  G  A  L  Y  C  L  F  F  A  Y  V   : G  A  G  G  L  G  F  L  Q  F  C  N  L  N  S  F  R  T  K  F  I  L  G  F  S  V  F  L  G  L  S  I  P  Q  Y  F  N  E  Y  T  A  V  A  G  Y  G  P  V  H  T  H  A  R  W  :  F  N  D  M  A  N  V  P  F  Q  S  K  A  F  V  A  G  I  V  A  F  F  L  D  N  T  M  H  K  K  D  G  Q  T  R  K  D  R  G  K  H  W  W  D  K  F  K  S  F  K  T  D  T  R  S  E  E  F  Y  S  L  P  F  N  L  N  K  Y  F  P  S  V  *  F  G  D  A  T  D  T  K  V  S  S  F  Y  *  *  V  L  E  F  I  C  A  C  W  R  G  G  E  V  G  C  C  C  N  I  N  F  L  L  S  *  E  M  K  Y  E  E  A  *  N  N  S  Y  *  F  K  Y  F  L  L  L  *  I  Y  G  S  F  G  F  N  F  N  *  Q  L  S  K  Q  S  F  Y  E  L  *  L  A  V  N </second_frame>
            <third_frame>   E  E  E  E  Q  L  Q  Q  Q  R  Q  V  N  Q  C  H  I  H  Q  K  I  S  F  L  M  F  L  T  A  L  L  V  L  P  H  G  :  L  K  L  F  F  L  D  F  S  I  I  L  L  C  L  V  P  L  L  S  F  L  Q  L  *  F  P  K  W  E  V  E  M :   R  K  K  P  K  L  F  R  H  R  Y  S  S  L  G  *  T  P  C  C  S  L  S  L  G  L  D  C  L  L  *  L  E  G  L  I  P  L  L  H  L  Q  S  R  L  S  F  L  D  N  G  M  M  K  I  L  C  R :   N  S  R  R  *  C  G  P  P  K  V  P  L  L  L  L  Q  P  F  R  L  S  *  A  S  V  V  S  G  A  M  L  Q   : G  F  *  V  H  F  Q  L  F  L  W  F  L  L  L  A  L  V  F  M  S  L  V  F  L  G :   L  P  N  V  L  K  L  G  C  Q  S  *  S  F  *  S  F  S  L  S :   I  W  H  T  *  Y  V  Q  G  R  I  Y  L  I  V  L  L  F  F  S  R  *  S  L  Y  G  F  M  H  T  Y  S  L  W  A  G  L  T  M  E  S  H  R  R  H  K  Q  A  A  E  L  T  V  L  D  S  L  V  V  L  N   : G  L  V  F  L  T  L  S  N  G  D  L  L  H  S  M  L  V  K  H  L  L  *  *  W  L  V  L  L  L  *  *  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G  R :   E  L  A  F  Y  Y  Q  D  Y  L  A  L  G  M  D  L  L  Y  P   : W  R  M  L  V  Y  *  H  *  H  V  L  A  V  E  E  L  F  R  Y  L  L  R  S  *  F  S  F  Q  F  S  :  G  N  L  E  L  S  L  L  Q  F  L  H  L  L  L  V  L  Y  I  A  F  S  S  L  M  *  :  A  L  E  A  *  V  F  F  S  S  A  I  L  I  V  S  A  P  S  L  Y  *  V  S  P  S  F  L  A  C  P  F  H  S  T  S  M  S  I  L  L  L  L  V  M  D  L  F  T  H  M  Q  D  G :   S  T  T  W  P  T  F  P  F  N  Q  K  L  L  W  R  V  S  L  P  F  S  W  T  T  Q  C  T  K  R  M  A  R  Q  E  R  T  E  A  S  T  G  G  T  N  S  S  P  S  R  L  T  R  E  V  R  N  S  T  P  S  L  S  I  *  T  S  I  S  H  L  C  D  L  A  T  P  R  T  Q  R  F  H  L  F  T  S  K  Y  *  S  S  S  V  L  V  G  E  G  G  R  *  V  A  A  A  T  S  I  F  F  F  H  E  K  *  S  M  K  K  L  R  T  T  V  I  S  L  S  I  S  Y  C  C  K  F  M  D  H  L  D  S  T  L  T  S  N  *  A  S  N  P  F  M  N  Y  N  *  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24958" stop="25066"/>
                    <exon start="26710" stop="26807"/>
                    <exon start="26917" stop="27090"/>
                    <exon start="28173" stop="28273"/>
                    <exon start="28520" stop="28595"/>
                    <exon start="28676" stop="28735"/>
                    <exon start="29768" stop="29952"/>
                    <exon start="31027" stop="31123"/>
                    <exon start="31493" stop="31579"/>
                    <exon start="32811" stop="32869"/>
                    <exon start="32955" stop="33046"/>
                    <exon start="33155" stop="33232"/>
                    <exon start="33342" stop="33502"/>
                    <exon start="33592" stop="33810"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGGAAPAAKASEPVPHPPKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTIVIIPTALVPQMGGGNEEKAQVIQTSLFVAGLNTLLQSIFGTRLPAVIGGSYTFVAPTISIILSGQWNDEDPVSKFKKIMRATQGALIVASTLQIVLGFSGLWRNVTRFLSPLSAVPLVSLVGFGLYEFGFPGVAKCVEIGLPELVLLVIFSQYLAHLIRPGKNIFDRFAVLFTVIIVWIYAHLLTVGGAYNGKPPKTQASCRTDRAGLISGAQWISIPYPFQWGPPSFNAGEAFAMMMASFVALVESTGAFIAVARYASATPLPPSILSRGVGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAAFMIFFSILGKFGAVFASIPAPIVGALYCLFFAYVGAGGLGFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAVAGYGPVHTHARWFNDMANVPFQSKAFVAGIVAFFLDNTMHKKDGQTRKDRGKHWWDKFKSFKTDTRSEEFYSLPFNLNKYFPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30614" e_stop="31123"/>
            <exon e_start="31493" e_stop="31579"/>
            <exon e_start="32811" e_stop="32869"/>
            <exon e_start="32955" e_stop="33046"/>
            <exon e_start="33155" e_stop="33232"/>
            <exon e_start="33342" e_stop="33502"/>
            <exon e_start="33592" e_stop="34074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.272" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="30614" e_stop="31123" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31493" e_stop="31579" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32811" e_stop="32869" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32955" e_stop="33046" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.933">
            <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33155" e_stop="33232" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.272" acc_prob="0.973">
            <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33342" e_stop="33502" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="33592" e_stop="34074" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30614" stop="31123"/>
              <exon start="31493" stop="31558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30619" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31027" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="33601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32855" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33175" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33188" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33760" stop="34055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33760" stop="34055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG : GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT : GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG : GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG : GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG : TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</gDNA_template>
            <first_frame> L  C  W  S  V  I  P  T  L  S  I  T  G  T  Y  G  H  G  A  I  D  *  E  K  Y  A  Q  V  G  V  P  K  *  P  I  *  V  L  Y  Y  R  L  H  R  V  F  V  G  Q  F  *  K  M  E  H  N  K  N  *  I  S  L  S  I  S  S  S  L  T  V  G  L  M  V  V  T  W  D  A  Y  C  L  K  N  I  P  L  R  S  L  L  I  L  R  C  F  C  W  L  S  I  V  L  N  L  L  L  *  P  V  G  K  Y  S  S  R  I  T  R  Q  L  I  V  I  L  I  I  F  S  F  R  L  L  V  *  T  C  R  I  S  I  P  Y  P  F  Q  W  G  P  P  S  F  N  A  G  E  A  F  A  M  M  M  A  S  F  V  A  L  V  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q  :  G  V  G  I  L  L  S  G  L  F  G  T  G  N  G  S  S  V  S  V :   E  N  A  G  L  L  A  L  T  R  V  G  S  R  R  V  V  Q  I  S  A  A  F  M  I  F  F  S  I  L   : G  K  F  G  A  V  F  A  S  I  P  A  P  I  V  G  A  L  Y  C  L  F  F  A  Y  V   : G  A  G  G  L  G  F  L  Q  F  C  N  L  N  S  F  R  T  K  F  I  L  G  F  S  V  F  L  G  L  S  I  P  Q  Y  F  N  E  Y  T  A  V  A  G  Y  G  P  V  H  T  H  A  R  W  :  F  N  D  M  A  N  V  P  F  Q  S  K  A  F  V  A  G  I  V  A  F  F  L  D  N  T  M  H  K  K  D  G  Q  T  R  K  D  R  G  K  H  W  W  D  K  F  K  S  F  K  T  D  T  R  S  E  E  F  Y  S  L  P  F  N  L  N  K  Y  F  P  S  V  *  F  G  D  A  T  D  T  K  V  S  S  F  Y  *  *  V  L  E  F  I  C  A  C  W  R  G  G  E  V  G  C  C  C  N  I  N  F  L  L  S  *  E  M  K  Y  E  E  A  *  N  N  S  Y  *  F  K  Y  F  L  L  L  *  I  Y  G  S  F  G  F  N  F  N  *  Q  L  S  K  Q  S  F  Y  E  L  *  L  A  V  N </first_frame>
            <second_frame>  C  A  G  L  L  F  P  H  *  A  *  L  A  H  M  V  M  V  L  *  I  R  K  S  T  H  K  W  V  S  Q  S  N  L  S  E  S  Y  I  I  D  C  I  E  C  L  L  V  N  F  E  K  W  S  I  T  K  I  R  F  R  Y  P  F  H  L  L  L  L  L  V  L  W  L  *  H  G  M  H  I  V  *  K  T  F  H  Y  V  H  Y  S  Y  *  G  V  F  V  G  *  V  L  F  L  I  C  Y  F  S  L  *  E  N  I  P  L  E  L  R  G  N  L  L  *  F  *  *  F  S  L  F  V  C  W  F  E  P  A  G  L  V  F  L  T  L  S  N  G  D  L  L  H  S  M  L  V  K  H  L  L  *  *  W  L  V  L  L  L  *  *  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G  R :   E  L  A  F  Y  Y  Q  D  Y  L  A  L  G  M  D  L  L  Y  P   : W  R  M  L  V  Y  *  H  *  H  V  L  A  V  E  E  L  F  R  Y  L  L  R  S  *  F  S  F  Q  F  S  :  G  N  L  E  L  S  L  L  Q  F  L  H  L  L  L  V  L  Y  I  A  F  S  S  L  M  *  :  A  L  E  A  *  V  F  F  S  S  A  I  L  I  V  S  A  P  S  L  Y  *  V  S  P  S  F  L  A  C  P  F  H  S  T  S  M  S  I  L  L  L  L  V  M  D  L  F  T  H  M  Q  D  G :   S  T  T  W  P  T  F  P  F  N  Q  K  L  L  W  R  V  S  L  P  F  S  W  T  T  Q  C  T  K  R  M  A  R  Q  E  R  T  E  A  S  T  G  G  T  N  S  S  P  S  R  L  T  R  E  V  R  N  S  T  P  S  L  S  I  *  T  S  I  S  H  L  C  D  L  A  T  P  R  T  Q  R  F  H  L  F  T  S  K  Y  *  S  S  S  V  L  V  G  E  G  G  R  *  V  A  A  A  T  S  I  F  F  F  H  E  K  *  S  M  K  K  L  R  T  T  V  I  S  L  S  I  S  Y  C  C  K  F  M  D  H  L  D  S  T  L  T  S  N  *  A  S  N  P  F  M  N  Y  N  *  Q  *   </second_frame>
            <third_frame>   V  L  V  C  Y  S  H  T  E  H  N  W  H  I  W  S  W  C  Y  R  L  G  K  V  R  T  S  G  C  P  K  V  T  Y  L  S  L  I  L  S  T  A  *  S  V  C  W  S  I  L  K  N  G  A  *  Q  K  L  D  F  V  I  H  F  I  F  S  Y  C  W  S  Y  G  C  D  M  G  C  I  L  F  E  K  H  S  I  T  F  I  T  H  I  K  V  F  L  L  V  K  Y  C  S  *  F  V  T  L  A  C  R  K  I  F  L  *  N  Y  E  A  T  Y  C  N  F  N  N  F  L  F  S  F  A  G  L  N  L  Q  D  *  Y  S  L  P  F  P  M  G  T  S  F  I  Q  C  W  *  S  I  C  Y  D  D  G  *  F  C  C  S  S  R   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A   : G  S  W  H  S  T  I  R  I  I  W  H  W  E  W  I  F  C  I  R  :  G  E  C  W  S  I  S  I  D  T  C  W  Q  *  K  S  C  S  D  I  C  C  V  H  D  F  L  F  N  S  R :   E  I  W  S  C  L  C  F  N  S  C  T  Y  C  W  C  F  I  L  P  F  L  R  L  C  R :   R  W  R  L  R  F  S  S  V  L  Q  S  *  *  F  P  H  Q  V  Y  I  R  F  L  R  L  S  W  L  V  H  S  T  V  L  Q  *  V  Y  C  C  C  W  L  W  T  C  S  H  T  C  K  M   : V  Q  R  H  G  Q  R  S  L  S  I  K  S  F  C  G  G  Y  R  C  L  F  P  G  Q  H  N  A  Q  K  G  W  P  D  K  K  G  Q  R  Q  A  L  V  G  Q  I  Q  V  L  Q  D  *  H  E  K  *  G  I  L  L  P  P  F  Q  S  E  Q  V  F  P  I  C  V  I  W  R  R  H  G  H  K  G  F  I  F  L  L  V  S  T  R  V  H  L  C  L  L  E  R  G  G  G  R  L  L  L  Q  H  Q  F  S  S  F  M  R  N  E  V  *  R  S  L  E  Q  Q  L  L  V  *  V  F  P  T  V  V  N  L  W  I  I  W  I  Q  L  *  L  A  I  E  Q  A  I  L  L  *  I  I  I  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31019" stop="31123"/>
                    <exon start="31493" stop="31579"/>
                    <exon start="32811" stop="32869"/>
                    <exon start="32955" stop="33046"/>
                    <exon start="33155" stop="33232"/>
                    <exon start="33342" stop="33502"/>
                    <exon start="33592" stop="33810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCRISIPYPFQWGPPSFNAGEAFAMMMASFVALVESTGAFIAVARYASATPLPPSILSRGVGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAAFMIFFSILGKFGAVFASIPAPIVGALYCLFFAYVGAGGLGFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAVAGYGPVHTHARWFNDMANVPFQSKAFVAGIVAFFLDNTMHKKDGQTRKDRGKHWWDKFKSFKTDTRSEEFYSLPFNLNKYFPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28519" e_stop="28595"/>
            <exon e_start="28676" e_stop="28735"/>
            <exon e_start="29768" e_stop="29952"/>
            <exon e_start="31027" e_stop="31123"/>
            <exon e_start="31493" e_stop="31579"/>
            <exon e_start="32811" e_stop="32869"/>
            <exon e_start="32955" e_stop="33046"/>
            <exon e_start="33155" e_stop="33232"/>
            <exon e_start="33342" e_stop="33502"/>
            <exon e_start="33592" e_stop="34074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.272" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28519" e_stop="28595" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28596" i_stop="28675" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28676" e_stop="28735" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28736" i_stop="29767" i_length="1032"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29768" e_stop="29952" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29953" i_stop="31026" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31027" e_stop="31123" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31124" i_stop="31492" i_length="369"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31493" e_stop="31579" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31580" i_stop="32810" i_length="1231"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32811" e_stop="32869" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32870" i_stop="32954" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32955" e_stop="33046" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.956" acc_prob="0.933">
            <gDNA_intron_boundary i_start="33047" i_stop="33154" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33155" e_stop="33232" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.272" acc_prob="0.973">
            <gDNA_intron_boundary i_start="33233" i_stop="33341" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33342" e_stop="33502" e_length="161"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33503" i_stop="33591" i_length="89"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="33592" e_stop="34074" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28519" stop="28595"/>
              <exon start="28676" stop="28735"/>
              <exon start="29768" stop="29952"/>
              <exon start="31027" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28705" stop="28735"/>
              <exon start="29768" stop="29952"/>
              <exon start="31027" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31027" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="33601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="31123"/>
              <exon start="31493" stop="31579"/>
              <exon start="32811" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32855" stop="32869"/>
              <exon start="32955" stop="33046"/>
              <exon start="33155" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33175" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33188" stop="33232"/>
              <exon start="33342" stop="33502"/>
              <exon start="33592" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33760" stop="34055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33760" stop="34055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG : GTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAG : TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG : GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG : GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT : GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG : GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG : GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG : TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAAT</gDNA_template>
            <first_frame> G  F  *  V  H  F  Q  L  F  L  W  F  L  L  L  A  L  V  F  M  S  L  V  F  L  G :   L  P  N  V  L  K  L  G  C  Q  S  *  S  F  *  S  F  S  L  S :   I  W  H  T  *  Y  V  Q  G  R  I  Y  L  I  V  L  L  F  F  S  R  *  S  L  Y  G  F  M  H  T  Y  S  L  W  A  G  L  T  M  E  S  H  R  R  H  K  Q  A  A  E  L  T  V  L  D  S  L  V  V  L  N   : G  L  V  F  L  T  L  S  N  G  D  L  L  H  S  M  L  V  K  H  L  L  *  *  W  L  V  L  L  L  *  *  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G  R :   E  L  A  F  Y  Y  Q  D  Y  L  A  L  G  M  D  L  L  Y  P   : W  R  M  L  V  Y  *  H  *  H  V  L  A  V  E  E  L  F  R  Y  L  L  R  S  *  F  S  F  Q  F  S  :  G  N  L  E  L  S  L  L  Q  F  L  H  L  L  L  V  L  Y  I  A  F  S  S  L  M  *  :  A  L  E  A  *  V  F  F  S  S  A  I  L  I  V  S  A  P  S  L  Y  *  V  S  P  S  F  L  A  C  P  F  H  S  T  S  M  S  I  L  L  L  L  V  M  D  L  F  T  H  M  Q  D  G :   S  T  T  W  P  T  F  P  F  N  Q  K  L  L  W  R  V  S  L  P  F  S  W  T  T  Q  C  T  K  R  M  A  R  Q  E  R  T  E  A  S  T  G  G  T  N  S  S  P  S  R  L  T  R  E  V  R  N  S  T  P  S  L  S  I  *  T  S  I  S  H  L  C  D  L  A  T  P  R  T  Q  R  F  H  L  F  T  S  K  Y  *  S  S  S  V  L  V  G  E  G  G  R  *  V  A  A  A  T  S  I  F  F  F  H  E  K  *  S  M  K  K  L  R  T  T  V  I  S  L  S  I  S  Y  C  C  K  F  M  D  H  L  D  S  T  L  T  S  N  *  A  S  N  P  F  M  N  Y  N  *  Q  *   </first_frame>
            <second_frame>  V  S  E  S  T  F  S  C  S  F  G  F  S  C  W  L  W  S  L  *  V  W  F  S  W   : G  C  Q  M  C  *  N  W  V  A  R  A  S  P  F  S  H  F  L  S   : V  S  G  T  P  D  T  S  R  E  E  Y  I  *  S  F  C  C  S  F  H  G  D  H  C  M  D  L  C  T  P  T  H  C  G  R  G  L  Q  W  K  A  T  E  D  T  S  K  L  Q  N  *  P  C  W  T  H  *  W  C  S  M  :  D  *  Y  S  L  P  F  P  M  G  T  S  F  I  Q  C  W  *  S  I  C  Y  D  D  G  *  F  C  C  S  S  R   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A   : G  S  W  H  S  T  I  R  I  I  W  H  W  E  W  I  F  C  I  R  :  G  E  C  W  S  I  S  I  D  T  C  W  Q  *  K  S  C  S  D  I  C  C  V  H  D  F  L  F  N  S  R :   E  I  W  S  C  L  C  F  N  S  C  T  Y  C  W  C  F  I  L  P  F  L  R  L  C  R :   R  W  R  L  R  F  S  S  V  L  Q  S  *  *  F  P  H  Q  V  Y  I  R  F  L  R  L  S  W  L  V  H  S  T  V  L  Q  *  V  Y  C  C  C  W  L  W  T  C  S  H  T  C  K  M   : V  Q  R  H  G  Q  R  S  L  S  I  K  S  F  C  G  G  Y  R  C  L  F  P  G  Q  H  N  A  Q  K  G  W  P  D  K  K  G  Q  R  Q  A  L  V  G  Q  I  Q  V  L  Q  D  *  H  E  K  *  G  I  L  L  P  P  F  Q  S  E  Q  V  F  P  I  C  V  I  W  R  R  H  G  H  K  G  F  I  F  L  L  V  S  T  R  V  H  L  C  L  L  E  R  G  G  G  R  L  L  L  Q  H  Q  F  S  S  F  M  R  N  E  V  *  R  S  L  E  Q  Q  L  L  V  *  V  F  P  T  V  V  N  L  W  I  I  W  I  Q  L  *  L  A  I  E  Q  A  I  L  L  *  I  I  I  S  S  K  </second_frame>
            <third_frame>   F  L  S  P  L  S  A  V  P  L  V  S  L  V  G  F  G  L  Y  E  F  G  F  P  G  :  V  A  K  C  V  E  I  G  L  P  E  L  V  L  L  V  I  F  S  Q  :  Y  L  A  H  L  I  R  P  G  K  N  I  F  D  R  F  A  V  L  F  T  V  I  I  V  W  I  Y  A  H  L  L  T  V  G  G  A  Y  N  G  K  P  P  K  T  Q  A  S  C  R  T  D  R  A  G  L  I  S  G  A  Q  W :   I  S  I  P  Y  P  F  Q  W  G  P  P  S  F  N  A  G  E  A  F  A  M  M  M  A  S  F  V  A  L  V  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q  :  G  V  G  I  L  L  S  G  L  F  G  T  G  N  G  S  S  V  S  V :   E  N  A  G  L  L  A  L  T  R  V  G  S  R  R  V  V  Q  I  S  A  A  F  M  I  F  F  S  I  L   : G  K  F  G  A  V  F  A  S  I  P  A  P  I  V  G  A  L  Y  C  L  F  F  A  Y  V   : G  A  G  G  L  G  F  L  Q  F  C  N  L  N  S  F  R  T  K  F  I  L  G  F  S  V  F  L  G  L  S  I  P  Q  Y  F  N  E  Y  T  A  V  A  G  Y  G  P  V  H  T  H  A  R  W  :  F  N  D  M  A  N  V  P  F  Q  S  K  A  F  V  A  G  I  V  A  F  F  L  D  N  T  M  H  K  K  D  G  Q  T  R  K  D  R  G  K  H  W  W  D  K  F  K  S  F  K  T  D  T  R  S  E  E  F  Y  S  L  P  F  N  L  N  K  Y  F  P  S  V  *  F  G  D  A  T  D  T  K  V  S  S  F  Y  *  *  V  L  E  F  I  C  A  C  W  R  G  G  E  V  G  C  C  C  N  I  N  F  L  L  S  *  E  M  K  Y  E  E  A  *  N  N  S  Y  *  F  K  Y  F  L  L  L  *  I  Y  G  S  F  G  F  N  F  N  *  Q  L  S  K  Q  S  F  Y  E  L  *  L  A  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28521" stop="28595"/>
                    <exon start="28676" stop="28735"/>
                    <exon start="29768" stop="29952"/>
                    <exon start="31027" stop="31123"/>
                    <exon start="31493" stop="31579"/>
                    <exon start="32811" stop="32869"/>
                    <exon start="32955" stop="33046"/>
                    <exon start="33155" stop="33232"/>
                    <exon start="33342" stop="33502"/>
                    <exon start="33592" stop="33810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSPLSAVPLVSLVGFGLYEFGFPGVAKCVEIGLPELVLLVIFSQYLAHLIRPGKNIFDRFAVLFTVIIVWIYAHLLTVGGAYNGKPPKTQASCRTDRAGLISGAQWISIPYPFQWGPPSFNAGEAFAMMMASFVALVESTGAFIAVARYASATPLPPSILSRGVGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAAFMIFFSILGKFGAVFASIPAPIVGALYCLFFAYVGAGGLGFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAVAGYGPVHTHARWFNDMANVPFQSKAFVAGIVAFFLDNTMHKKDGQTRKDRGKHWWDKFKSFKTDTRSEEFYSLPFNLNKYFPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="24957" e_stop="25066"/>
            <exon e_start="26710" e_stop="26807"/>
            <exon e_start="26917" e_stop="27090"/>
            <exon e_start="28173" e_stop="28273"/>
            <exon e_start="28520" e_stop="28528"/>
            <exon e_start="31493" e_stop="31579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24957" e_stop="25066" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="25067" i_stop="26709" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26710" e_stop="26807" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="26808" i_stop="26916" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26917" e_stop="27090" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.980">
            <gDNA_intron_boundary i_start="27091" i_stop="28172" i_length="1082"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28173" e_stop="28273" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.884">
            <gDNA_intron_boundary i_start="28274" i_stop="28519" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28520" e_stop="28528" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="28529" i_stop="31492" i_length="2964"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="31493" e_stop="31579" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="26978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24958" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27090"/>
              <exon start="28173" stop="28215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24960" stop="25066"/>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26710" stop="26807"/>
              <exon start="26917" stop="27090"/>
              <exon start="28173" stop="28273"/>
              <exon start="28520" stop="28528"/>
              <exon start="31493" stop="31579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC : CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT : GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG : AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG : GTTTCTGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG</gDNA_template>
            <first_frame> W  R  R  R  S  S  S  S  S  K  G  K  *  T  S  A  T  S  T  K  R  S  A  S  *  C  F  L  L  H  Y  *  S  S  P  M  A :   *  S  Y  S  S  W  I  S  A  L  S  C  Y  A  W  Y  H  C  Y  H  S  Y  S  S  S  S  P  N  G  R  W  K   : *  G  K  S  P  S  Y  S  D  I  A  I  R  R  W  A  E  H  L  V  A  V  Y  L  W  D  *  I  A  C  C  D  W  R  V  L  Y  L  C  C  T  Y  N  L  D  Y  P  F  W  T  M  E  *  *  R  S  C  V   : E  I  Q  E  D  N  A  G  H  P  R  C  P  Y  C  C  F  N  P  S  D  C  P  R  L  Q  W  S  L  A  Q  C  Y  K  :  V  S  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q </first_frame>
            <second_frame>  G  G  G  G  A  A  P  A  A  K  A  S  E  P  V  P  H  P  P  K  D  Q  L  P  N  V  S  Y  C  I  T  S  P  P  P  W   : P  E  A  I  L  L  G  F  Q  H  Y  L  V  M  L  G  T  I  V  I  I  P  T  A  L  V  P  Q  M  G  G  G  N  :  E  E  K  A  Q  V  I  Q  T  S  L  F  V  A  G  L  N  T  L  L  Q  S  I  F  G  T  R  L  P  A  V  I  G  G  S  Y  T  F  V  A  P  T  I  S  I  I  L  S  G  Q  W  N  D  E  D  P  V  S  :  K  F  K  K  I  M  R  A  T  Q  G  A  L  I  V  A  S  T  L  Q  I  V  L  G  F  S  G  L  W  R  N  V  T  R :   F  L  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G   </second_frame>
            <third_frame>   E  E  E  E  Q  L  Q  Q  Q  R  Q  V  N  Q  C  H  I  H  Q  K  I  S  F  L  M  F  L  T  A  L  L  V  L  P  H  G  :  L  K  L  F  F  L  D  F  S  I  I  L  L  C  L  V  P  L  L  S  F  L  Q  L  *  F  P  K  W  E  V  E  M :   R  K  K  P  K  L  F  R  H  R  Y  S  S  L  G  *  T  P  C  C  S  L  S  L  G  L  D  C  L  L  *  L  E  G  L  I  P  L  L  H  L  Q  S  R  L  S  F  L  D  N  G  M  M  K  I  L  C  R :   N  S  R  R  *  C  G  P  P  K  V  P  L  L  L  L  Q  P  F  R  L  S  *  A  S  V  V  S  G  A  M  L  Q   : G  F  *   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24958" stop="25066"/>
                    <exon start="26710" stop="26807"/>
                    <exon start="26917" stop="27090"/>
                    <exon start="28173" stop="28273"/>
                    <exon start="28520" stop="28528"/>
                    <exon start="31493" stop="31577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGGAAPAAKASEPVPHPPKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTIVIIPTALVPQMGGGNEEKAQVIQTSLFVAGLNTLLQSIFGTRLPAVIGGSYTFVAPTISIILSGQWNDEDPVSKFKKIMRATQGALIVASTLQIVLGFSGLWRNVTRFLSPLVLLLQLQDMQVPLPYHHPYLVVVLVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34174" PGL_stop="33814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34174" e_stop="33814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34174" e_stop="33814" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34174" stop="33814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTTTGATTTCACATAATTTAAAAACCATTTTACAATTTTTCTATTTTTTTCATGCAAGACAAAAAAAAAAATTGTCCTAGTGTTTTGTTGTACACTGATTTACTGCTAATTATAATTCATAAAAGGATTGCTTGCTCAATTGCTAGTTAAAGTTGAATCCAAATGATCCATAAATTTACAACAGTAGGAAATACTTAAACTAATAACTGTTGTTCTAAGCTTCTTCATACTTCATTTCTCATGAAAGAAGAAAATTGATGTTGCAGCAGCAACCTACCTCCCCCCCTCTCCAACAAGCACAGATGAACTCTAGTACTTACTAGTAAAAAGATGAAACCTTTGTGTCCGTGGCGTCGCC</gDNA_template>
            <first_frame> F  V  *  F  H  I  I  *  K  P  F  Y  N  F  S  I  F  F  M  Q  D  K  K  K  N  C  P  S  V  L  L  Y  T  D  L  L  L  I  I  I  H  K  R  I  A  C  S  I  A  S  *  S  *  I  Q  M  I  H  K  F  T  T  V  G  N  T  *  T  N  N  C  C  S  K  L  L  H  T  S  F  L  M  K  E  E  N  *  C  C  S  S  N  L  P  P  P  L  S  N  K  H  R  *  T  L  V  L  T  S  K  K  M  K  P  L  C  P  W  R  R  </first_frame>
            <second_frame>  L  F  D  F  T  *  F  K  N  H  F  T  I  F  L  F  F  S  C  K  T  K  K  K  I  V  L  V  F  C  C  T  L  I  Y  C  *  L  *  F  I  K  G  L  L  A  Q  L  L  V  K  V  E  S  K  *  S  I  N  L  Q  Q  *  E  I  L  K  L  I  T  V  V  L  S  F  F  I  L  H  F  S  *  K  K  K  I  D  V  A  A  A  T  Y  L  P  P  S  P  T  S  T  D  E  L  *  Y  L  L  V  K  R  *  N  L  C  V  R  G  V  A </second_frame>
            <third_frame>   C  L  I  S  H  N  L  K  T  I  L  Q  F  F  Y  F  F  H  A  R  Q  K  K  K  L  S  *  C  F  V  V  H  *  F  T  A  N  Y  N  S  *  K  D  C  L  L  N  C  *  L  K  L  N  P  N  D  P  *  I  Y  N  S  R  K  Y  L  N  *  *  L  L  F  *  A  S  S  Y  F  I  S  H  E  R  R  K  L  M  L  Q  Q  Q  P  T  S  P  P  L  Q  Q  A  Q  M  N  S  S  T  Y  *  *  K  D  E  T  F  V  S  V  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39953" PGL_stop="40408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39953" e_stop="40408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="39953" e_stop="40408" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39953" stop="40408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCATAAAAATCCATGAGAATTTTCAGAACAAGCATAACAGCAATTGCAGTGTGTTTGGTAGAGAAAAAAAAGATTGTATTGGTCAATGGTGGCATTAAAGCACAAAACCATAGGCATATAAACACAAAATGAAGGAAACTCTTCTCTTGACTCTCATGAAGATGTCATATAATAGATATATGTAATAAGTCTTGAATTGTATGTATGAACCAGAACAACAATTTGGTTCAGCTCCCGACTGAAAGTCGATTACCCTTTATGTTTTAAACTCAAACTGAGATGAAAATGTTCACGGCTAGGCTCGTGATATTGTGCTCTCAGTCATCCCTTTAGTTTTTCTCATGGTCTTCCATTTGGCTGAAGTTGCCTCTCTCCTTGAAAAGTTGAGTGTGATGGTGCCTACAGTACAATCTATGCTCATGAGCTACATAGTTTGATGGACTGATCACACAG</gDNA_template>
            <first_frame> S  S  *  K  S  M  R  I  F  R  T  S  I  T  A  I  A  V  C  L  V  E  K  K  K  I  V  L  V  N  G  G  I  K  A  Q  N  H  R  H  I  N  T  K  *  R  K  L  F  S  *  L  S  *  R  C  H  I  I  D  I  C  N  K  S  *  I  V  C  M  N  Q  N  N  N  L  V  Q  L  P  T  E  S  R  L  P  F  M  F  *  T  Q  T  E  M  K  M  F  T  A  R  L  V  I  L  C  S  Q  S  S  L  *  F  F  S  W  S  S  I  W  L  K  L  P  L  S  L  K  S  *  V  *  W  C  L  Q  Y  N  L  C  S  *  A  T  *  F  D  G  L  I  T  Q </first_frame>
            <second_frame>  H  H  K  N  P  *  E  F  S  E  Q  A  *  Q  Q  L  Q  C  V  W  *  R  K  K  R  L  Y  W  S  M  V  A  L  K  H  K  T  I  G  I  *  T  Q  N  E  G  N  S  S  L  D  S  H  E  D  V  I  *  *  I  Y  V  I  S  L  E  L  Y  V  *  T  R  T  T  I  W  F  S  S  R  L  K  V  D  Y  P  L  C  F  K  L  K  L  R  *  K  C  S  R  L  G  S  *  Y  C  A  L  S  H  P  F  S  F  S  H  G  L  P  F  G  *  S  C  L  S  P  *  K  V  E  C  D  G  A  Y  S  T  I  Y  A  H  E  L  H  S  L  M  D  *  S  H   </second_frame>
            <third_frame>   I  I  K  I  H  E  N  F  Q  N  K  H  N  S  N  C  S  V  F  G  R  E  K  K  D  C  I  G  Q  W  W  H  *  S  T  K  P  *  A  Y  K  H  K  M  K  E  T  L  L  L  T  L  M  K  M  S  Y  N  R  Y  M  *  *  V  L  N  C  M  Y  E  P  E  Q  Q  F  G  S  A  P  D  *  K  S  I  T  L  Y  V  L  N  S  N  *  D  E  N  V  H  G  *  A  R  D  I  V  L  S  V  I  P  L  V  F  L  M  V  F  H  L  A  E  V  A  S  L  L  E  K  L  S  V  M  V  P  T  V  Q  S  M  L  M  S  Y  I  V  *  W  T  D  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="43277" PGL_stop="40075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43277" e_stop="43137"/>
            <exon e_start="41095" e_stop="40999"/>
            <exon e_start="40895" e_stop="40858"/>
            <exon e_start="40752" e_stop="40666"/>
            <exon e_start="40464" e_stop="40075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43277" e_stop="43137" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="43136" i_stop="41096" i_length="2041"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41095" e_stop="40999" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.738" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40998" i_stop="40896" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40895" e_stop="40858" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.928">
            <gDNA_intron_boundary i_start="40857" i_stop="40753" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40752" e_stop="40666" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.857" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40665" i_stop="40465" i_length="201"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40464" e_stop="40075" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43277" stop="43137"/>
              <exon start="41095" stop="40999"/>
              <exon start="40895" stop="40858"/>
              <exon start="40752" stop="40666"/>
              <exon start="40464" stop="40369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43276" stop="43137"/>
              <exon start="41095" stop="40999"/>
              <exon start="40895" stop="40858"/>
              <exon start="40752" stop="40666"/>
              <exon start="40464" stop="40329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43276" stop="43137"/>
              <exon start="41095" stop="40999"/>
              <exon start="40895" stop="40858"/>
              <exon start="40752" stop="40666"/>
              <exon start="40464" stop="40331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43276" stop="43137"/>
              <exon start="41095" stop="40999"/>
              <exon start="40895" stop="40858"/>
              <exon start="40752" stop="40681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40888" stop="40858"/>
              <exon start="40752" stop="40666"/>
              <exon start="40464" stop="40075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATGGCAAGTTTTGGAGGGACAACTCAGAAGTGTAAGGCTTGTGAAAAAACTGTTTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTATCATAAAGCTTGTTTCAGATGCCACCATTGTAAGGGTACACTCAAG : CTGAGTAATTATAACTCCTTCGAAGGAGTTTTGTACTGCCGACCTCACTTTGATCAGCTATTCAAAATGACAGGAAGTCTGGATAAGAGTTTCGAAG : GGGCTCCGAAAACTGTCAGGGAACGTTCCGCGGATCAG : GGATCAAACAGTAAGGTTTCAAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTATCCACTAGAAAAG : GTAGCAGTGGATGGCACTTCGTACCACAGGCCTTGTTTCAAATGCAGCCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATAGATTGTACTGTAGGCACCATCACACTCAACTTTTCAAGGAGAGAGGCAACTTCAGCCAAATGGAAGACCATGAGAAAAACTAAAGGGATGACTGAGAGCACAATATCACGAGCCTAGCCGTGAACATTTTCATCTCAGTTTGAGTTTAAAACATAAAGGGTAATCGACTTTCAGTCGGGAGCTGAACCAAATTGTTGTTCTGGTTCATACATACAATTCAAGACTTATTACATATATCTATTATATGACATCTTCATGAGAGTCAAGAGAAGAGTTTCCTTCATTTTGTGTTT</gDNA_template>
            <first_frame> E  M  A  S  F  G  G  T  T  Q  K  C  K  A  C  E  K  T  V  Y  L  V  D  Q  L  T  A  D  N  K  V  Y  H  K  A  C  F  R  C  H  H  C  K  G  T  L  K  :  L  S  N  Y  N  S  F  E  G  V  L  Y  C  R  P  H  F  D  Q  L  F  K  M  T  G  S  L  D  K  S  F  E   : G  A  P  K  T  V  R  E  R  S  A  D  Q  :  G  S  N  S  K  V  S  S  L  F  G  G  T  Q  D  K  C  V  A  C  K  K  T  V  Y  P  L  E  K  :  V  A  V  D  G  T  S  Y  H  R  P  C  F  K  C  S  H  G  G  C  V  I  S  P  S  N  Y  V  A  H  E  H  R  L  Y  C  R  H  H  H  T  Q  L  F  K  E  R  G  N  F  S  Q  M  E  D  H  E  K  N  *  R  D  D  *  E  H  N  I  T  S  L  A  V  N  I  F  I  S  V  *  V  *  N  I  K  G  N  R  L  S  V  G  S  *  T  K  L  L  F  W  F  I  H  T  I  Q  D  L  L  H  I  S  I  I  *  H  L  H  E  S  Q  E  K  S  F  L  H  F  V  F </first_frame>
            <second_frame>  K  W  Q  V  L  E  G  Q  L  R  S  V  R  L  V  K  K  L  F  T  W  W  I  S  L  L  L  T  I  R  F  I  I  K  L  V  S  D  A  T  I  V  R  V  H  S  S :   *  V  I  I  T  P  S  K  E  F  C  T  A  D  L  T  L  I  S  Y  S  K  *  Q  E  V  W  I  R  V  S  K  :  G  L  R  K  L  S  G  N  V  P  R  I  R :   D  Q  T  V  R  F  Q  V  C  L  A  E  L  K  I  N  V  L  L  A  R  K  L  S  I  H  *  K  R :   *  Q  W  M  A  L  R  T  T  G  L  V  S  N  A  A  M  E  A  V  *  S  V  H  Q  T  M  *  L  M  S  I  D  C  T  V  G  T  I  T  L  N  F  S  R  R  E  A  T  S  A  K  W  K  T  M  R  K  T  K  G  M  T  E  S  T  I  S  R  A  *  P  *  T  F  S  S  Q  F  E  F  K  T  *  R  V  I  D  F  Q  S  G  A  E  P  N  C  C  S  G  S  Y  I  Q  F  K  T  Y  Y  I  Y  L  L  Y  D  I  F  M  R  V  K  R  R  V  S  F  I  L  C   </second_frame>
            <third_frame>   N  G  K  F  W  R  D  N  S  E  V  *  G  L  *  K  N  C  L  L  G  G  S  A  Y  C  *  Q  *  G  L  S  *  S  L  F  Q  M  P  P  L  *  G  Y  T  Q   : A  E  *  L  *  L  L  R  R  S  F  V  L  P  T  S  L  *  S  A  I  Q  N  D  R  K  S  G  *  E  F  R  R :   G  S  E  N  C  Q  G  T  F  R  G  S   : G  I  K  Q  *  G  F  K  F  V  W  R  N  S  R  *  M  C  C  L  Q  E  N  C  L  S  T  R  K   : G  S  S  G  W  H  F  V  P  Q  A  L  F  Q  M  Q  P  W  R  L  C  D  Q  S  I  K  L  C  S  S  *  A  *  I  V  L  *  A  P  S  H  S  T  F  Q  G  E  R  Q  L  Q  P  N  G  R  P  *  E  K  L  K  G  *  L  R  A  Q  Y  H  E  P  S  R  E  H  F  H  L  S  L  S  L  K  H  K  G  *  S  T  F  S  R  E  L  N  Q  I  V  V  L  V  H  T  Y  N  S  R  L  I  T  Y  I  Y  Y  M  T  S  S  *  E  S  R  E  E  F  P  S  F  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43277" stop="43137"/>
                    <exon start="41095" stop="40999"/>
                    <exon start="40895" stop="40858"/>
                    <exon start="40752" stop="40666"/>
                    <exon start="40464" stop="40285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMASFGGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKMTGSLDKSFEGAPKTVRERSADQGSNSKVSSLFGGTQDKCVACKKTVYPLEKVAVDGTSYHRPCFKCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKERGNFSQMEDHEKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="53144" PGL_stop="58607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53144" e_stop="53659"/>
            <exon e_start="53796" e_stop="53929"/>
            <exon e_start="54779" e_stop="54859"/>
            <exon e_start="54947" e_stop="55095"/>
            <exon e_start="55444" e_stop="55536"/>
            <exon e_start="55629" e_stop="55752"/>
            <exon e_start="55848" e_stop="55913"/>
            <exon e_start="56018" e_stop="56087"/>
            <exon e_start="56202" e_stop="56278"/>
            <exon e_start="57043" e_stop="57156"/>
            <exon e_start="57369" e_stop="57446"/>
            <exon e_start="57544" e_stop="57695"/>
            <exon e_start="57823" e_stop="57883"/>
            <exon e_start="57985" e_stop="58091"/>
            <exon e_start="58226" e_stop="58467"/>
            <exon e_start="58594" e_stop="58607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="0.965"/>
          <exon-intron don_prob="0.993" acc_prob="0.926" e_score="0.962"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="0.972"/>
          <exon-intron don_prob="0.795" acc_prob="0.976" e_score="0.951"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.963"/>
          <exon-intron don_prob="0.000" acc_prob="0.591" e_score="0.934"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="53144" e_stop="53659" e_length="516"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="53660" i_stop="53795" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53796" e_stop="53929" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53930" i_stop="54778" i_length="849"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54779" e_stop="54859" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54860" i_stop="54946" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54947" e_stop="55095" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.994">
            <gDNA_intron_boundary i_start="55096" i_stop="55443" i_length="348"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55444" e_stop="55536" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.871">
            <gDNA_intron_boundary i_start="55537" i_stop="55628" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55629" e_stop="55752" e_length="124"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55753" i_stop="55847" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55848" e_stop="55913" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="55914" i_stop="56017" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56018" e_stop="56087" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.960" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56088" i_stop="56201" i_length="114"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56202" e_stop="56278" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.829" acc_prob="0.974">
            <gDNA_intron_boundary i_start="56279" i_stop="57042" i_length="764"/>
          </intron>
          <exon e_serial="10" e_score="0.965">
            <gDNA_exon_boundary e_start="57043" e_stop="57156" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57157" i_stop="57368" i_length="212"/>
          </intron>
          <exon e_serial="11" e_score="0.962">
            <gDNA_exon_boundary e_start="57369" e_stop="57446" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.926">
            <gDNA_intron_boundary i_start="57447" i_stop="57543" i_length="97"/>
          </intron>
          <exon e_serial="12" e_score="0.972">
            <gDNA_exon_boundary e_start="57544" e_stop="57695" e_length="152"/>
          </exon>
          <intron i_serial="12" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57696" i_stop="57822" i_length="127"/>
          </intron>
          <exon e_serial="13" e_score="0.951">
            <gDNA_exon_boundary e_start="57823" e_stop="57883" e_length="61"/>
          </exon>
          <intron i_serial="13" don_prob="0.795" acc_prob="0.976">
            <gDNA_intron_boundary i_start="57884" i_stop="57984" i_length="101"/>
          </intron>
          <exon e_serial="14" e_score="0.963">
            <gDNA_exon_boundary e_start="57985" e_stop="58091" e_length="107"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58092" i_stop="58225" i_length="134"/>
          </intron>
          <exon e_serial="15" e_score="0.934">
            <gDNA_exon_boundary e_start="58226" e_stop="58467" e_length="242"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.591">
            <gDNA_intron_boundary i_start="58468" i_stop="58593" i_length="126"/>
          </intron>
          <exon e_serial="16" e_score="0.786">
            <gDNA_exon_boundary e_start="58594" e_stop="58607" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53144" stop="53611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53487" stop="53659"/>
              <exon start="53796" stop="53929"/>
              <exon start="54779" stop="54859"/>
              <exon start="54947" stop="55095"/>
              <exon start="55444" stop="55536"/>
              <exon start="55629" stop="55645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53520" stop="53659"/>
              <exon start="53796" stop="53929"/>
              <exon start="54779" stop="54859"/>
              <exon start="54947" stop="55095"/>
              <exon start="55444" stop="55470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53520" stop="53659"/>
              <exon start="53796" stop="53929"/>
              <exon start="54779" stop="54859"/>
              <exon start="54947" stop="55095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54828" stop="54859"/>
              <exon start="54947" stop="55095"/>
              <exon start="55444" stop="55536"/>
              <exon start="55629" stop="55666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54954" stop="55095"/>
              <exon start="55444" stop="55536"/>
              <exon start="55629" stop="55752"/>
              <exon start="55848" stop="55913"/>
              <exon start="56018" stop="56087"/>
              <exon start="56202" stop="56278"/>
              <exon start="57043" stop="57076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55012" stop="55095"/>
              <exon start="55444" stop="55536"/>
              <exon start="55629" stop="55752"/>
              <exon start="55848" stop="55913"/>
              <exon start="56018" stop="56087"/>
              <exon start="56202" stop="56278"/>
              <exon start="57043" stop="57154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55012" stop="55095"/>
              <exon start="55444" stop="55536"/>
              <exon start="55629" stop="55752"/>
              <exon start="55848" stop="55913"/>
              <exon start="56018" stop="56087"/>
              <exon start="56202" stop="56278"/>
              <exon start="57043" stop="57138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56027" stop="56087"/>
              <exon start="56202" stop="56278"/>
              <exon start="57043" stop="57156"/>
              <exon start="57369" stop="57446"/>
              <exon start="57544" stop="57695"/>
              <exon start="57823" stop="57883"/>
              <exon start="57985" stop="58091"/>
              <exon start="58226" stop="58301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57552" stop="57695"/>
              <exon start="57823" stop="57883"/>
              <exon start="57985" stop="58091"/>
              <exon start="58226" stop="58467"/>
              <exon start="58594" stop="58607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412288" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATGAAAAAGATGGATAAGTGATGTTACTACTTACTACTATCCTTTCTAATTTTCCTATTTCATTCATTTCATGATTTCTCTCCAAAAAATAGTAACACTATCTAATTAATTTATTCCAAAAAAAATTATACATTTCTACGTTTGAAATATAATTTGAATTTAAATCAACATTAAACGAATAAAATTCATAAACATACAAATATAAGATTGTGAAATATTTTCGTCGAAACAACTTTCATAATAAAATCAATGTAGACGTTAAATCCTTTCGACTTCTTTTTTGCTCATTTCTTTATATGGTGGCTTTTTATATGAACAAAAATCACTGATCTAACTACTCCCTGCGCCATTTTATCAGTTTTCTTTACGTAAGGGTGAGGTGATTGTATCGAGTTATGGCAAATCGTAATGTACCAATCCCTCGTCGACAGCTGTACATCGGCGGAGAATGGAGAGAACCGGTCAAGAAGAACCGGATTCCGATAATCAATCCGGCTACTGAAGAAATCATCG : GGGATATTCCGGCGGCTACCGCGGAAGATGTGGATATAGCTGTGGAAGCAGCACGGAAAGCGATTGCGAGGGATGACTGGGGTTCTACAACAGGGGCACAACGCGCAAAATACCTCCGTGCTATTGCTGCTAAG : GTACTGGAGAAGAAATCCGTACTTGCAACACTTGAATCCCTTGATAGTGGAAAAACATTGTATGAGTCTGCTGCAGATATG : GATGACGTTGCAGGATGTTTTGAGTACTATGCAGGCCTTGCTGAAGCTTTGGATTCGAGAAGGATGACTCCGGTTAATCTTAATTCAGATTCATATAAAAGTTATGTTCTTAGAGAACCTCTTGGTGTTGTGGGATTGATAACTCCATG : GAATTATCCATTGTTAATGGCCATATGGAAAGTTGCCCCTGCTCTGGCTGCTGGTTGTGCAGCAATACTTAAGCCATCTGAACTAGCATCAAT : TACCTGTTTGGAGTTGGGTGAGATCTGTAGAGAGATTGGTCTTCCTTCTGGTGCCCTTAACATTTTAACAGGATTGGGGCCTGAAGCTGGTGGTCCTTTGGCATCTCATCCTCATGTGGACAAG : ATTTCATTTACAGGAAGTGGACCTACAGGATCTAAGATCATGACTGCTGCAGCTCAACTTGTTAAA : CCAGTTAGTCTTGAGCTTGGTGGAAAAAGTCCAATCGTGGTGTTTGACGATATCGATAACCTTGATATAG : CTGCTGAGTGGACTCTTTTTGGCATCTTTGCAAATACTGGTCAAGTTTGTAGTGCAACATCACGGCTTATAGTACAG : GAAAACATTGCTTCTGCATTTATGGACAGACTGCTTAAGTGGACCAAAAACATCAAAATCTCCGATCCTTTGGAAGAAGACTGCAAGCTTGGTCCTGTCGTCAGTGCTGGACAA : TATGAGAAGGTATTGAAGTTCATCTCAAATGCCAAAAGTGAAGGTGCAACCATTCTGTGTGGTGGCGAACGGCCTCAG : CACTTGAAGAAAGGATATTATGTTCAGCCAACAATTATTACTGATGTTAATACCTCAATGGAAATCTGGAAAGAGGAAGTATTCGGACCCGTTCTTTGTGTCAAAACATTCAAAACTGAAGAGCAAGCCATTGAACTAGCAAACGACACCAA : GTATGGCTTGGGTGCTGCTGTTATGTCAAAAGACGTTAAAAGGTGTGAGAGGTTTACAAAG : GCATTTCAGACAGGTATCATCTGGATTAACTGTTCACAGCCAACCTTTAATGAGCTACCATGGGGTGGTAAAAAGCGTAGTGGTTTTGGACGTGATCTAGGGAAATG : GGGTCTTGAAAATTTCTTGAACATTAAGCAGGTGACAGAGTATACTTCTGCTGAACCATTGGCTTTTTATAAGTCACCTTCAAAGAATTAGTAAAAGGGAGTTTGTCCACGAAGCAGTTTTAATAAATGTGCAAAACTAAACTCTAGTCTATTAGAATTGTTTATTTTGCTCGTTAACCAATAAACAGTTTTAATAAACCTTAATCGAATAGAGACAATATCAAAGTAGCTTTTCTTTTCTA : GAAAAACAAAGAAA</gDNA_template>
            <first_frame> Y  M  K  K  M  D  K  *  C  Y  Y  L  L  L  S  F  L  I  F  L  F  H  S  F  H  D  F  S  P  K  N  S  N  T  I  *  L  I  Y  S  K  K  N  Y  T  F  L  R  L  K  Y  N  L  N  L  N  Q  H  *  T  N  K  I  H  K  H  T  N  I  R  L  *  N  I  F  V  E  T  T  F  I  I  K  S  M  *  T  L  N  P  F  D  F  F  F  A  H  F  F  I  W  W  L  F  I  *  T  K  I  T  D  L  T  T  P  C  A  I  L  S  V  F  F  T  *  G  *  G  D  C  I  E  L  W  Q  I  V  M  Y  Q  S  L  V  D  S  C  T  S  A  E  N  G  E  N  R  S  R  R  T  G  F  R  *  S  I  R  L  L  K  K  S  S  :  G  I  F  R  R  L  P  R  K  M  W  I  *  L  W  K  Q  H  G  K  R  L  R  G  M  T  G  V  L  Q  Q  G  H  N  A  Q  N  T  S  V  L  L  L  L  R :   Y  W  R  R  N  P  Y  L  Q  H  L  N  P  L  I  V  E  K  H  C  M  S  L  L  Q  I  W :   M  T  L  Q  D  V  L  S  T  M  Q  A  L  L  K  L  W  I  R  E  G  *  L  R  L  I  L  I  Q  I  H  I  K  V  M  F  L  E  N  L  L  V  L  W  D  *  *  L  H   : G  I  I  H  C  *  W  P  Y  G  K  L  P  L  L  W  L  L  V  V  Q  Q  Y  L  S  H  L  N  *  H  Q   : L  P  V  W  S  W  V  R  S  V  E  R  L  V  F  L  L  V  P  L  T  F  *  Q  D  W  G  L  K  L  V  V  L  W  H  L  I  L  M  W  T  R :   F  H  L  Q  E  V  D  L  Q  D  L  R  S  *  L  L  Q  L  N  L  L  N :   Q  L  V  L  S  L  V  E  K  V  Q  S  W  C  L  T  I  S  I  T  L  I  *  :  L  L  S  G  L  F  L  A  S  L  Q  I  L  V  K  F  V  V  Q  H  H  G  L  *  Y  R :   K  T  L  L  L  H  L  W  T  D  C  L  S  G  P  K  T  S  K  S  P  I  L  W  K  K  T  A  S  L  V  L  S  S  V  L  D  N :   M  R  R  Y  *  S  S  S  Q  M  P  K  V  K  V  Q  P  F  C  V  V  A  N  G  L  S :   T  *  R  K  D  I  M  F  S  Q  Q  L  L  L  M  L  I  P  Q  W  K  S  G  K  R  K  Y  S  D  P  F  F  V  S  K  H  S  K  L  K  S  K  P  L  N  *  Q  T  T  P   : S  M  A  W  V  L  L  L  C  Q  K  T  L  K  G  V  R  G  L  Q  R :   H  F  R  Q  V  S  S  G  L  T  V  H  S  Q  P  L  M  S  Y  H  G  V  V  K  S  V  V  V  L  D  V  I  *  G  N   : G  V  L  K  I  S  *  T  L  S  R  *  Q  S  I  L  L  L  N  H  W  L  F  I  S  H  L  Q  R  I  S  K  R  E  F  V  H  E  A  V  L  I  N  V  Q  N  *  T  L  V  Y  *  N  C  L  F  C  S  L  T  N  K  Q  F  *  *  T  L  I  E  *  R  Q  Y  Q  S  S  F  S  F  L  :  E  K  Q  R   </first_frame>
            <second_frame>  T  *  K  R  W  I  S  D  V  T  T  Y  Y  Y  P  F  *  F  S  Y  F  I  H  F  M  I  S  L  Q  K  I  V  T  L  S  N  *  F  I  P  K  K  I  I  H  F  Y  V  *  N  I  I  *  I  *  I  N  I  K  R  I  K  F  I  N  I  Q  I  *  D  C  E  I  F  S  S  K  Q  L  S  *  *  N  Q  C  R  R  *  I  L  S  T  S  F  L  L  I  S  L  Y  G  G  F  L  Y  E  Q  K  S  L  I  *  L  L  P  A  P  F  Y  Q  F  S  L  R  K  G  E  V  I  V  S  S  Y  G  K  S  *  C  T  N  P  S  S  T  A  V  H  R  R  R  M  E  R  T  G  Q  E  E  P  D  S  D  N  Q  S  G  Y  *  R  N  H  R :   G  Y  S  G  G  Y  R  G  R  C  G  Y  S  C  G  S  S  T  E  S  D  C  E  G  *  L  G  F  Y  N  R  G  T  T  R  K  I  P  P  C  Y  C  C  *   : G  T  G  E  E  I  R  T  C  N  T  *  I  P  *  *  W  K  N  I  V  *  V  C  C  R  Y   : G  *  R  C  R  M  F  *  V  L  C  R  P  C  *  S  F  G  F  E  K  D  D  S  G  *  S  *  F  R  F  I  *  K  L  C  S  *  R  T  S  W  C  C  G  I  D  N  S  M  :  E  L  S  I  V  N  G  H  M  E  S  C  P  C  S  G  C  W  L  C  S  N  T  *  A  I  *  T  S  I  N  :  Y  L  F  G  V  G  *  D  L  *  R  D  W  S  S  F  W  C  P  *  H  F  N  R  I  G  A  *  S  W  W  S  F  G  I  S  S  S  C  G  Q   : D  F  I  Y  R  K  W  T  Y  R  I  *  D  H  D  C  C  S  S  T  C  *   : T  S  *  S  *  A  W  W  K  K  S  N  R  G  V  *  R  Y  R  *  P  *  Y  S :   C  *  V  D  S  F  W  H  L  C  K  Y  W  S  S  L  *  C  N  I  T  A  Y  S  T   : G  K  H  C  F  C  I  Y  G  Q  T  A  *  V  D  Q  K  H  Q  N  L  R  S  F  G  R  R  L  Q  A  W  S  C  R  Q  C  W  T   : I  *  E  G  I  E  V  H  L  K  C  Q  K  *  R  C  N  H  S  V  W  W  R  T  A  S   : A  L  E  E  R  I  L  C  S  A  N  N  Y  Y  *  C  *  Y  L  N  G  N  L  E  R  G  S  I  R  T  R  S  L  C  Q  N  I  Q  N  *  R  A  S  H  *  T  S  K  R  H  Q  :  V  W  L  G  C  C  C  Y  V  K  R  R  *  K  V  *  E  V  Y  K   : G  I  S  D  R  Y  H  L  D  *  L  F  T  A  N  L  *  *  A  T  M  G  W  *  K  A  *  W  F  W  T  *  S  R  E  M  :  G  S  *  K  F  L  E  H  *  A  G  D  R  V  Y  F  C  *  T  I  G  F  L  *  V  T  F  K  E  L  V  K  G  S  L  S  T  K  Q  F  *  *  M  C  K  T  K  L  *  S  I  R  I  V  Y  F  A  R  *  P  I  N  S  F  N  K  P  *  S  N  R  D  N  I  K  V  A  F  L  F  * :   K  N  K  E  </second_frame>
            <third_frame>   H  E  K  D  G  *  V  M  L  L  L  T  T  I  L  S  N  F  P  I  S  F  I  S  *  F  L  S  K  K  *  *  H  Y  L  I  N  L  F  Q  K  K  L  Y  I  S  T  F  E  I  *  F  E  F  K  S  T  L  N  E  *  N  S  *  T  Y  K  Y  K  I  V  K  Y  F  R  R  N  N  F  H  N  K  I  N  V  D  V  K  S  F  R  L  L  F  C  S  F  L  Y  M  V  A  F  Y  M  N  K  N  H  *  S  N  Y  S  L  R  H  F  I  S  F  L  Y  V  R  V  R  *  L  Y  R  V  M  A  N  R  N  V  P  I  P  R  R  Q  L  Y  I  G  G  E  W  R  E  P  V  K  K  N  R  I  P  I  I  N  P  A  T  E  E  I  I   : G  D  I  P  A  A  T  A  E  D  V  D  I  A  V  E  A  A  R  K  A  I  A  R  D  D  W  G  S  T  T  G  A  Q  R  A  K  Y  L  R  A  I  A  A  K  :  V  L  E  K  K  S  V  L  A  T  L  E  S  L  D  S  G  K  T  L  Y  E  S  A  A  D  M  :  D  D  V  A  G  C  F  E  Y  Y  A  G  L  A  E  A  L  D  S  R  R  M  T  P  V  N  L  N  S  D  S  Y  K  S  Y  V  L  R  E  P  L  G  V  V  G  L  I  T  P  W :   N  Y  P  L  L  M  A  I  W  K  V  A  P  A  L  A  A  G  C  A  A  I  L  K  P  S  E  L  A  S  I :   T  C  L  E  L  G  E  I  C  R  E  I  G  L  P  S  G  A  L  N  I  L  T  G  L  G  P  E  A  G  G  P  L  A  S  H  P  H  V  D  K  :  I  S  F  T  G  S  G  P  T  G  S  K  I  M  T  A  A  A  Q  L  V  K  :  P  V  S  L  E  L  G  G  K  S  P  I  V  V  F  D  D  I  D  N  L  D  I   : A  A  E  W  T  L  F  G  I  F  A  N  T  G  Q  V  C  S  A  T  S  R  L  I  V  Q  :  E  N  I  A  S  A  F  M  D  R  L  L  K  W  T  K  N  I  K  I  S  D  P  L  E  E  D  C  K  L  G  P  V  V  S  A  G  Q  :  Y  E  K  V  L  K  F  I  S  N  A  K  S  E  G  A  T  I  L  C  G  G  E  R  P  Q  :  H  L  K  K  G  Y  Y  V  Q  P  T  I  I  T  D  V  N  T  S  M  E  I  W  K  E  E  V  F  G  P  V  L  C  V  K  T  F  K  T  E  E  Q  A  I  E  L  A  N  D  T  K :   Y  G  L  G  A  A  V  M  S  K  D  V  K  R  C  E  R  F  T  K  :  A  F  Q  T  G  I  I  W  I  N  C  S  Q  P  T  F  N  E  L  P  W  G  G  K  K  R  S  G  F  G  R  D  L  G  K  W :   G  L  E  N  F  L  N  I  K  Q  V  T  E  Y  T  S  A  E  P  L  A  F  Y  K  S  P  S  K  N  *  *  K  G  V  C  P  R  S  S  F  N  K  C  A  K  L  N  S  S  L  L  E  L  F  I  L  L  V  N  Q  *  T  V  L  I  N  L  N  R  I  E  T  I  S  K  *  L  F  F  S   : R  K  T  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53530" stop="53659"/>
                    <exon start="53796" stop="53929"/>
                    <exon start="54779" stop="54859"/>
                    <exon start="54947" stop="55095"/>
                    <exon start="55444" stop="55536"/>
                    <exon start="55629" stop="55752"/>
                    <exon start="55848" stop="55913"/>
                    <exon start="56018" stop="56087"/>
                    <exon start="56202" stop="56278"/>
                    <exon start="57043" stop="57156"/>
                    <exon start="57369" stop="57446"/>
                    <exon start="57544" stop="57695"/>
                    <exon start="57823" stop="57883"/>
                    <exon start="57985" stop="58091"/>
                    <exon start="58226" stop="58316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRVMANRNVPIPRRQLYIGGEWREPVKKNRIPIINPATEEIIGDIPAATAEDVDIAVEAARKAIARDDWGSTTGAQRAKYLRAIAAKVLEKKSVLATLESLDSGKTLYESAADMDDVAGCFEYYAGLAEALDSRRMTPVNLNSDSYKSYVLREPLGVVGLITPWNYPLLMAIWKVAPALAAGCAAILKPSELASITCLELGEICREIGLPSGALNILTGLGPEAGGPLASHPHVDKISFTGSGPTGSKIMTAAAQLVKPVSLELGGKSPIVVFDDIDNLDIAAEWTLFGIFANTGQVCSATSRLIVQENIASAFMDRLLKWTKNIKISDPLEEDCKLGPVVSAGQYEKVLKFISNAKSEGATILCGGERPQHLKKGYYVQPTIITDVNTSMEIWKEEVFGPVLCVKTFKTEEQAIELANDTKYGLGAAVMSKDVKRCERFTKAFQTGIIWINCSQPTFNELPWGGKKRSGFGRDLGKWGLENFLNIKQVTEYTSAEPLAFYKSPSKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59174" PGL_stop="62395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59174" e_stop="59686"/>
            <exon e_start="60453" e_stop="61235"/>
            <exon e_start="61327" e_stop="62395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.978"/>
          <exon-intron don_prob="0.995" acc_prob="0.822" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="59174" e_stop="59686" e_length="513"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59687" i_stop="60452" i_length="766"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60453" e_stop="61235" e_length="783"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.822">
            <gDNA_intron_boundary i_start="61236" i_stop="61326" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="61327" e_stop="62395" e_length="1069"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59174" stop="59686"/>
              <exon start="60453" stop="60546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59184" stop="59686"/>
              <exon start="60453" stop="60656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59184" stop="59683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59191" stop="59684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59206" stop="59686"/>
              <exon start="60453" stop="60549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59206" stop="59686"/>
              <exon start="60453" stop="60531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59206" stop="59682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59280" stop="59686"/>
              <exon start="60453" stop="61235"/>
              <exon start="61327" stop="62285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59298" stop="59686"/>
              <exon start="60453" stop="60660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59305" stop="59686"/>
              <exon start="60453" stop="60541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59310" stop="59686"/>
              <exon start="60453" stop="60706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59317" stop="59685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60510" stop="61235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60598" stop="61203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60598" stop="61201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61050" stop="61235"/>
              <exon start="61327" stop="61418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61348" stop="62128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61428" stop="61998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61437" stop="62118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61437" stop="61975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61531" stop="62259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61598" stop="62329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61598" stop="62329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61603" stop="62218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61745" stop="62347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61773" stop="62395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAAGCAAAGCAATACAAAGACTTCAAAAGTCAATGGCTCATTTCCTCTACATTTCATCCAATCACCAAAAGCTTAAGTACCCATTTCCCCTTTACCTTCACTCCATCTCTCTATCCTCAATCTTTCTTCAAGGATTCTTGAAAACTAAACAGTAAAGTTGCAATCTTTAAGCAGCTAAGAAGCAAAAATGGTGAAAATTGGAGAAGGAATTGAAGTCAGAGATGAGCTAATCAAGAAAACATGTAACTTAACCATGGAAGCTCACAATTTATCACCTGGGAAACCTTATATTTACAAGAAAATTAATGGGTCTACTGATGTTGTTTTTGCTTTTGCTGGAACTTTGTCTTCTGATGGTTGGTACAGTAACACTTCTTTTGGAGAGAAAGAGATCAACACCACTCTGTTTCCATCTTTGAGAAGTGTTGGCACTGATGAAGTAGCTAAGGTCAATGAAGTATTTGCTACAAGATTTGAAGAGATACTGGACAAATCTTCACTTAAAAATGAG : GTGGAGAAGGCAATGTTAGAAGGAAGACAGGTAGTGTTTGCAGGGCACTCGTCGGGTGGCGCTATAGCTATTCTGGCAGCTCTCTGGTGTCTGGAATGTTGCCGCACAAGACCAAATGGTGACATGTTACTCCATCCATACTGTATGACTTTTGGATCCCCTCTTGTTGGTAACAAGATATGGTCTCATGCCCTCAGGCGCGAAAACTGGGCTCGTTACTTCCTACATTTTGTCATGAAGTACGACGTTGTCCCCAGAATGATGCTTGCTCCTCTTTCATCAATTCAAGAATTGCTTCAAGTAATCTCTCCCTTCATCAATCCAAAGTCCCAGTATTATCAGCACGAGGCTGTTGCACGATCAAGTCATGCATCGAATTTCTTTATGACTGTAATGAGGAGTGCATCCTCTGTTGCAAGCTATGATGCATGTAATCTGAAGGGATGCACAAACTTACTGTTGGAAACTGTTTCCAACATTGTTCAACTTAGCCCTTACAGACCCTTCGGAACTTACATCTTCTGCACTGGGAATAGGAAACTGGTTGTCGTTGAGAACCCTGATGCTGTTCTGCAGTTACTGTTCTATTCCTCTCAATTGAGTTCCGAAGCAGAAGCTGCAGTAGTTGTTCCTAGAAGCTTAAACGATCACCTGTTATATAAAAACGAAATGCAAGATAGCTTAGAGATGCAAGATGTTCTCCATCTCAACAATCTTACTGATATTCCTTTATCTTCAAATGTTGATCCAAGTATGAATTCAGCACTGAATGACCTTGGCCTG : AGTACAAGAGCAAGGCTGTGTCTTCGTGCAGCAGGAGAGTGGGAGAAGCAGAAGAAGAAGAACGAGGAAAAGATTGAACAAAATAAGAGAAGCATCAGGGACGCATTAAGCAAGATACAGGAGTATCAGACCAAGTGTGATATCCGTAAAGTTGGGTATTATGATGCATTCAAGATTCAAAACACCGATGATGACTTCAATGCTAATGTGAGAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCATTGAAATGTTGAAAAGGTATGAGCTCCCAGATAGCTTCGAGGGACGAAGAGACTGGATAGAACTAGGGACACAGTTTCGCAGGCAAGTTGAGCCCTTGGATATTGCAAACTATTACAGGCACTTGAAGAATGAAGATACTGGACCTTACTTGATCAGGGCTAGGCCTAAGCGTTATCGGTTCACACAGAGATGGTTAGAGCATTTTGATAGAGTGCAAGCTGGTGCACGTTCCGAGTCTTGTTTCTGGGCAGAAGTTGAGGAACTAAGAAACAAGCCATTTGCACAAGTGCAAGACAGGGTTTTGAATTTAGAAACAGCTGCAAATGGCTGGATCCAGAGTAGCCTTCTTGGCGATGATATTTTCTTCCCTGAATCTACCTATACCAAGTGGTGGAAAACACTCCCACCTCAGCACAAACAGGCATCTTGGGTGTCAAGGAAAATAACTCCTTAGCGCCTTGCGCCCTAATATCTTGATAAAGATGGTATCCCAGCCAACTCACAGACACCTATAACATTCCACCACATATGTTGCAATGCCCCTAATAAGAGCAGCCAGATGGTATTTGCTTCAGATAATAAGAAAAAGATAGAAGTAACAGCTTTACATTACTTCAATGAGATTAACCCAGATATATGTAGCTCAGATAATTGAAGATGTTTCAACTTTCATGAGAACTGCTTTACTTGTATGGTAGATTAGTAGCAAGAATAGCAACAACATTCAAGTATTTAAGTTTGGGATACAACAAACTCACAATTTTTCCATGTACACCGAGAATTTCAAACTTTTTATGTTTTAAGATCCTTCAAGTAACGAA</gDNA_template>
            <first_frame> V  K  Q  S  N  T  K  T  S  K  V  N  G  S  F  P  L  H  F  I  Q  S  P  K  A  *  V  P  I  S  P  L  P  S  L  H  L  S  I  L  N  L  S  S  R  I  L  E  N  *  T  V  K  L  Q  S  L  S  S  *  E  A  K  M  V  K  I  G  E  G  I  E  V  R  D  E  L  I  K  K  T  C  N  L  T  M  E  A  H  N  L  S  P  G  K  P  Y  I  Y  K  K  I  N  G  S  T  D  V  V  F  A  F  A  G  T  L  S  S  D  G  W  Y  S  N  T  S  F  G  E  K  E  I  N  T  T  L  F  P  S  L  R  S  V  G  T  D  E  V  A  K  V  N  E  V  F  A  T  R  F  E  E  I  L  D  K  S  S  L  K  N  E  :  V  E  K  A  M  L  E  G  R  Q  V  V  F  A  G  H  S  S  G  G  A  I  A  I  L  A  A  L  W  C  L  E  C  C  R  T  R  P  N  G  D  M  L  L  H  P  Y  C  M  T  F  G  S  P  L  V  G  N  K  I  W  S  H  A  L  R  R  E  N  W  A  R  Y  F  L  H  F  V  M  K  Y  D  V  V  P  R  M  M  L  A  P  L  S  S  I  Q  E  L  L  Q  V  I  S  P  F  I  N  P  K  S  Q  Y  Y  Q  H  E  A  V  A  R  S  S  H  A  S  N  F  F  M  T  V  M  R  S  A  S  S  V  A  S  Y  D  A  C  N  L  K  G  C  T  N  L  L  L  E  T  V  S  N  I  V  Q  L  S  P  Y  R  P  F  G  T  Y  I  F  C  T  G  N  R  K  L  V  V  V  E  N  P  D  A  V  L  Q  L  L  F  Y  S  S  Q  L  S  S  E  A  E  A  A  V  V  V  P  R  S  L  N  D  H  L  L  Y  K  N  E  M  Q  D  S  L  E  M  Q  D  V  L  H  L  N  N  L  T  D  I  P  L  S  S  N  V  D  P  S  M  N  S  A  L  N  D  L  G  L  :  S  T  R  A  R  L  C  L  R  A  A  G  E  W  E  K  Q  K  K  K  N  E  E  K  I  E  Q  N  K  R  S  I  R  D  A  L  S  K  I  Q  E  Y  Q  T  K  C  D  I  R  K  V  G  Y  Y  D  A  F  K  I  Q  N  T  D  D  D  F  N  A  N  V  R  R  L  E  L  A  G  I  W  D  E  I  I  E  M  L  K  R  Y  E  L  P  D  S  F  E  G  R  R  D  W  I  E  L  G  T  Q  F  R  R  Q  V  E  P  L  D  I  A  N  Y  Y  R  H  L  K  N  E  D  T  G  P  Y  L  I  R  A  R  P  K  R  Y  R  F  T  Q  R  W  L  E  H  F  D  R  V  Q  A  G  A  R  S  E  S  C  F  W  A  E  V  E  E  L  R  N  K  P  F  A  Q  V  Q  D  R  V  L  N  L  E  T  A  A  N  G  W  I  Q  S  S  L  L  G  D  D  I  F  F  P  E  S  T  Y  T  K  W  W  K  T  L  P  P  Q  H  K  Q  A  S  W  V  S  R  K  I  T  P  *  R  L  A  P  *  Y  L  D  K  D  G  I  P  A  N  S  Q  T  P  I  T  F  H  H  I  C  C  N  A  P  N  K  S  S  Q  M  V  F  A  S  D  N  K  K  K  I  E  V  T  A  L  H  Y  F  N  E  I  N  P  D  I  C  S  S  D  N  *  R  C  F  N  F  H  E  N  C  F  T  C  M  V  D  *  *  Q  E  *  Q  Q  H  S  S  I  *  V  W  D  T  T  N  S  Q  F  F  H  V  H  R  E  F  Q  T  F  Y  V  L  R  S  F  K  *  R  </first_frame>
            <second_frame>  S  S  K  A  I  Q  R  L  Q  K  S  M  A  H  F  L  Y  I  S  S  N  H  Q  K  L  K  Y  P  F  P  L  Y  L  H  S  I  S  L  S  S  I  F  L  Q  G  F  L  K  T  K  Q  *  S  C  N  L  *  A  A  K  K  Q  K  W  *  K  L  E  K  E  L  K  S  E  M  S  *  S  R  K  H  V  T  *  P  W  K  L  T  I  Y  H  L  G  N  L  I  F  T  R  K  L  M  G  L  L  M  L  F  L  L  L  L  E  L  C  L  L  M  V  G  T  V  T  L  L  L  E  R  K  R  S  T  P  L  C  F  H  L  *  E  V  L  A  L  M  K  *  L  R  S  M  K  Y  L  L  Q  D  L  K  R  Y  W  T  N  L  H  L  K  M  R :   W  R  R  Q  C  *  K  E  D  R  *  C  L  Q  G  T  R  R  V  A  L  *  L  F  W  Q  L  S  G  V  W  N  V  A  A  Q  D  Q  M  V  T  C  Y  S  I  H  T  V  *  L  L  D  P  L  L  L  V  T  R  Y  G  L  M  P  S  G  A  K  T  G  L  V  T  S  Y  I  L  S  *  S  T  T  L  S  P  E  *  C  L  L  L  F  H  Q  F  K  N  C  F  K  *  S  L  P  S  S  I  Q  S  P  S  I  I  S  T  R  L  L  H  D  Q  V  M  H  R  I  S  L  *  L  *  *  G  V  H  P  L  L  Q  A  M  M  H  V  I  *  R  D  A  Q  T  Y  C  W  K  L  F  P  T  L  F  N  L  A  L  T  D  P  S  E  L  T  S  S  A  L  G  I  G  N  W  L  S  L  R  T  L  M  L  F  C  S  Y  C  S  I  P  L  N  *  V  P  K  Q  K  L  Q  *  L  F  L  E  A  *  T  I  T  C  Y  I  K  T  K  C  K  I  A  *  R  C  K  M  F  S  I  S  T  I  L  L  I  F  L  Y  L  Q  M  L  I  Q  V  *  I  Q  H  *  M  T  L  A  * :   V  Q  E  Q  G  C  V  F  V  Q  Q  E  S  G  R  S  R  R  R  R  T  R  K  R  L  N  K  I  R  E  A  S  G  T  H  *  A  R  Y  R  S  I  R  P  S  V  I  S  V  K  L  G  I  M  M  H  S  R  F  K  T  P  M  M  T  S  M  L  M  *  E  G  L  S  *  Q  V  Y  G  M  R  S  L  K  C  *  K  G  M  S  S  Q  I  A  S  R  D  E  E  T  G  *  N  *  G  H  S  F  A  G  K  L  S  P  W  I  L  Q  T  I  T  G  T  *  R  M  K  I  L  D  L  T  *  S  G  L  G  L  S  V  I  G  S  H  R  D  G  *  S  I  L  I  E  C  K  L  V  H  V  P  S  L  V  S  G  Q  K  L  R  N  *  E  T  S  H  L  H  K  C  K  T  G  F  *  I  *  K  Q  L  Q  M  A  G  S  R  V  A  F  L  A  M  I  F  S  S  L  N  L  P  I  P  S  G  G  K  H  S  H  L  S  T  N  R  H  L  G  C  Q  G  K  *  L  L  S  A  L  R  P  N  I  L  I  K  M  V  S  Q  P  T  H  R  H  L  *  H  S  T  T  Y  V  A  M  P  L  I  R  A  A  R  W  Y  L  L  Q  I  I  R  K  R  *  K  *  Q  L  Y  I  T  S  M  R  L  T  Q  I  Y  V  A  Q  I  I  E  D  V  S  T  F  M  R  T  A  L  L  V  W  *  I  S  S  K  N  S  N  N  I  Q  V  F  K  F  G  I  Q  Q  T  H  N  F  S  M  Y  T  E  N  F  K  L  F  M  F  *  D  P  S  S  N  E </second_frame>
            <third_frame>   Q  A  K  Q  Y  K  D  F  K  S  Q  W  L  I  S  S  T  F  H  P  I  T  K  S  L  S  T  H  F  P  F  T  F  T  P  S  L  Y  P  Q  S  F  F  K  D  S  *  K  L  N  S  K  V  A  I  F  K  Q  L  R  S  K  N  G  E  N  W  R  R  N  *  S  Q  R  *  A  N  Q  E  N  M  *  L  N  H  G  S  S  Q  F  I  T  W  E  T  L  Y  L  Q  E  N  *  W  V  Y  *  C  C  F  C  F  C  W  N  F  V  F  *  W  L  V  Q  *  H  F  F  W  R  E  R  D  Q  H  H  S  V  S  I  F  E  K  C  W  H  *  *  S  S  *  G  Q  *  S  I  C  Y  K  I  *  R  D  T  G  Q  I  F  T  *  K  *   : G  G  E  G  N  V  R  R  K  T  G  S  V  C  R  A  L  V  G  W  R  Y  S  Y  S  G  S  S  L  V  S  G  M  L  P  H  K  T  K  W  *  H  V  T  P  S  I  L  Y  D  F  W  I  P  S  C  W  *  Q  D  M  V  S  C  P  Q  A  R  K  L  G  S  L  L  P  T  F  C  H  E  V  R  R  C  P  Q  N  D  A  C  S  S  F  I  N  S  R  I  A  S  S  N  L  S  L  H  Q  S  K  V  P  V  L  S  A  R  G  C  C  T  I  K  S  C  I  E  F  L  Y  D  C  N  E  E  C  I  L  C  C  K  L  *  C  M  *  S  E  G  M  H  K  L  T  V  G  N  C  F  Q  H  C  S  T  *  P  L  Q  T  L  R  N  L  H  L  L  H  W  E  *  E  T  G  C  R  *  E  P  *  C  C  S  A  V  T  V  L  F  L  S  I  E  F  R  S  R  S  C  S  S  C  S  *  K  L  K  R  S  P  V  I  *  K  R  N  A  R  *  L  R  D  A  R  C  S  P  S  Q  Q  S  Y  *  Y  S  F  I  F  K  C  *  S  K  Y  E  F  S  T  E  *  P  W  P   : E  Y  K  S  K  A  V  S  S  C  S  R  R  V  G  E  A  E  E  E  E  R  G  K  D  *  T  K  *  E  K  H  Q  G  R  I  K  Q  D  T  G  V  S  D  Q  V  *  Y  P  *  S  W  V  L  *  C  I  Q  D  S  K  H  R  *  *  L  Q  C  *  C  E  K  A  *  A  S  R  Y  M  G  *  D  H  *  N  V  E  K  V  *  A  P  R  *  L  R  G  T  K  R  L  D  R  T  R  D  T  V  S  Q  A  S  *  A  L  G  Y  C  K  L  L  Q  A  L  E  E  *  R  Y  W  T  L  L  D  Q  G  *  A  *  A  L  S  V  H  T  E  M  V  R  A  F  *  *  S  A  S  W  C  T  F  R  V  L  F  L  G  R  S  *  G  T  K  K  Q  A  I  C  T  S  A  R  Q  G  F  E  F  R  N  S  C  K  W  L  D  P  E  *  P  S  W  R  *  Y  F  L  P  *  I  Y  L  Y  Q  V  V  E  N  T  P  T  S  A  Q  T  G  I  L  G  V  K  E  N  N  S  L  A  P  C  A  L  I  S  *  *  R  W  Y  P  S  Q  L  T  D  T  Y  N  I  P  P  H  M  L  Q  C  P  *  *  E  Q  P  D  G  I  C  F  R  *  *  E  K  D  R  S  N  S  F  T  L  L  Q  *  D  *  P  R  Y  M  *  L  R  *  L  K  M  F  Q  L  S  *  E  L  L  Y  L  Y  G  R  L  V  A  R  I  A  T  T  F  K  Y  L  S  L  G  Y  N  K  L  T  I  F  P  C  T  P  R  I  S  N  F  L  C  F  K  I  L  Q  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59354" stop="59686"/>
                    <exon start="60453" stop="61235"/>
                    <exon start="61327" stop="62028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1815</number_coding_nucleotides>
                  <number_encoded_amino_acids>605</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAKMVKIGEGIEVRDELIKKTCNLTMEAHNLSPGKPYIYKKINGSTDVVFAFAGTLSSDGWYSNTSFGEKEINTTLFPSLRSVGTDEVAKVNEVFATRFEEILDKSSLKNEVEKAMLEGRQVVFAGHSSGGAIAILAALWCLECCRTRPNGDMLLHPYCMTFGSPLVGNKIWSHALRRENWARYFLHFVMKYDVVPRMMLAPLSSIQELLQVISPFINPKSQYYQHEAVARSSHASNFFMTVMRSASSVASYDACNLKGCTNLLLETVSNIVQLSPYRPFGTYIFCTGNRKLVVVENPDAVLQLLFYSSQLSSEAEAAVVVPRSLNDHLLYKNEMQDSLEMQDVLHLNNLTDIPLSSNVDPSMNSALNDLGLSTRARLCLRAAGEWEKQKKKNEEKIEQNKRSIRDALSKIQEYQTKCDIRKVGYYDAFKIQNTDDDFNANVRRLELAGIWDEIIEMLKRYELPDSFEGRRDWIELGTQFRRQVEPLDIANYYRHLKNEDTGPYLIRARPKRYRFTQRWLEHFDRVQAGARSESCFWAEVEELRNKPFAQVQDRVLNLETAANGWIQSSLLGDDIFFPESTYTKWWKTLPPQHKQASWVSRKITP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62362" PGL_stop="59320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62362" e_stop="61445"/>
            <exon e_start="61232" e_stop="61227"/>
            <exon e_start="59409" e_stop="59320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.373" acc_prob="0.902" e_score="0.922"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="62362" e_stop="61445" e_length="918"/>
          </exon>
          <intron i_serial="1" don_prob="0.373" acc_prob="0.902">
            <gDNA_intron_boundary i_start="61444" i_stop="61233" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="61232" e_stop="61227" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61226" i_stop="59410" i_length="1817"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="59409" e_stop="59320" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62362" stop="61615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62039" stop="61445"/>
              <exon start="61232" stop="61227"/>
              <exon start="59409" stop="59320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485147" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAAATTCTCGGTGTACATGGAAAAATTGTGAGTTTGTTGTATCCCAAACTTAAATACTTGAATGTTGTTGCTATTCTTGCTACTAATCTACCATACAAGTAAAGCAGTTCTCATGAAAGTTGAAACATCTTCAATTATCTGAGCTACATATATCTGGGTTAATCTCATTGAAGTAATGTAAAGCTGTTACTTCTATCTTTTTCTTATTATCTGAAGCAAATACCATCTGGCTGCTCTTATTAGGGGCATTGCAACATATGTGGTGGAATGTTATAGGTGTCTGTGAGTTGGCTGGGATACCATCTTTATCAAGATATTAGGGCGCAAGGCGCTAAGGAGTTATTTTCCTTGACACCCAAGATGCCTGTTTGTGCTGAGGTGGGAGTGTTTTCCACCACTTGGTATAGGTAGATTCAGGGAAGAAAATATCATCGCCAAGAAGGCTACTCTGGATCCAGCCATTTGCAGCTGTTTCTAAATTCAAAACCCTGTCTTGCACTTGTGCAAATGGCTTGTTTCTTAGTTCCTCAACTTCTGCCCAGAAACAAGACTCGGAACGTGCACCAGCTTGCACTCTATCAAAATGCTCTAACCATCTCTGTGTGAACCGATAACGCTTAGGCCTAGCCCTGATCAAGTAAGGTCCAGTATCTTCATTCTTCAAGTGCCTGTAATAGTTTGCAATATCCAAGGGCTCAACTTGCCTGCGAAACTGTGTCCCTAGTTCTATCCAGTCTCTTCGTCCCTCGAAGCTATCTGGGAGCTCATACCTTTTCAACATTTCAATGATCTCATCCCATATACCTGCTAGCTCAAGCCTTCTCACATTAGCATTGAAGTCATCATCGGTGTTTTGAATCTTGAATGCATCATAATACCCAACTTTACGGATATCACACTTGGTCTGATACTCCT : GCCAAG : TTGATTAGCTCATCTCTGACTTCAATTCCTTCTCCAATTTTCACCATTTTTGCTTCTTAGCTGCTTAAAGATTGCAACTTTACTGTTTAG</gDNA_template>
            <first_frame> F  E  I  L  G  V  H  G  K  I  V  S  L  L  Y  P  K  L  K  Y  L  N  V  V  A  I  L  A  T  N  L  P  Y  K  *  S  S  S  H  E  S  *  N  I  F  N  Y  L  S  Y  I  Y  L  G  *  S  H  *  S  N  V  K  L  L  L  L  S  F  S  Y  Y  L  K  Q  I  P  S  G  C  S  Y  *  G  H  C  N  I  C  G  G  M  L  *  V  S  V  S  W  L  G  Y  H  L  Y  Q  D  I  R  A  Q  G  A  K  E  L  F  S  L  T  P  K  M  P  V  C  A  E  V  G  V  F  S  T  T  W  Y  R  *  I  Q  G  R  K  Y  H  R  Q  E  G  Y  S  G  S  S  H  L  Q  L  F  L  N  S  K  P  C  L  A  L  V  Q  M  A  C  F  L  V  P  Q  L  L  P  R  N  K  T  R  N  V  H  Q  L  A  L  Y  Q  N  A  L  T  I  S  V  *  T  D  N  A  *  A  *  P  *  S  S  K  V  Q  Y  L  H  S  S  S  A  C  N  S  L  Q  Y  P  R  A  Q  L  A  C  E  T  V  S  L  V  L  S  S  L  F  V  P  R  S  Y  L  G  A  H  T  F  S  T  F  Q  *  S  H  P  I  Y  L  L  A  Q  A  F  S  H  *  H  *  S  H  H  R  C  F  E  S  *  M  H  H  N  T  Q  L  Y  G  Y  H  T  W  S  D  T  P  :  A  K  :  L  I  S  S  S  L  T  S  I  P  S  P  I  F  T  I  F  A  S  *  L  L  K  D  C  N  F  T  V  * </first_frame>
            <second_frame>  L  K  F  S  V  Y  M  E  K  L  *  V  C  C  I  P  N  L  N  T  *  M  L  L  L  F  L  L  L  I  Y  H  T  S  K  A  V  L  M  K  V  E  T  S  S  I  I  *  A  T  Y  I  W  V  N  L  I  E  V  M  *  S  C  Y  F  Y  L  F  L  I  I  *  S  K  Y  H  L  A  A  L  I  R  G  I  A  T  Y  V  V  E  C  Y  R  C  L  *  V  G  W  D  T  I  F  I  K  I  L  G  R  K  A  L  R  S  Y  F  P  *  H  P  R  C  L  F  V  L  R  W  E  C  F  P  P  L  G  I  G  R  F  R  E  E  N  I  I  A  K  K  A  T  L  D  P  A  I  C  S  C  F  *  I  Q  N  P  V  L  H  L  C  K  W  L  V  S  *  F  L  N  F  C  P  E  T  R  L  G  T  C  T  S  L  H  S  I  K  M  L  *  P  S  L  C  E  P  I  T  L  R  P  S  P  D  Q  V  R  S  S  I  F  I  L  Q  V  P  V  I  V  C  N  I  Q  G  L  N  L  P  A  K  L  C  P  *  F  Y  P  V  S  S  S  L  E  A  I  W  E  L  I  P  F  Q  H  F  N  D  L  I  P  Y  T  C  *  L  K  P  S  H  I  S  I  E  V  I  I  G  V  L  N  L  E  C  I  I  I  P  N  F  T  D  I  T  L  G  L  I  L  L :   P  S :   *  L  A  H  L  *  L  Q  F  L  L  Q  F  S  P  F  L  L  L  S  C  L  K  I  A  T  L  L  F   </second_frame>
            <third_frame>   *  N  S  R  C  T  W  K  N  C  E  F  V  V  S  Q  T  *  I  L  E  C  C  C  Y  S  C  Y  *  S  T  I  Q  V  K  Q  F  S  *  K  L  K  H  L  Q  L  S  E  L  H  I  S  G  L  I  S  L  K  *  C  K  A  V  T  S  I  F  F  L  L  S  E  A  N  T  I  W  L  L  L  L  G  A  L  Q  H  M  W  W  N  V  I  G  V  C  E  L  A  G  I  P  S  L  S  R  Y  *  G  A  R  R  *  G  V  I  F  L  D  T  Q  D  A  C  L  C  *  G  G  S  V  F  H  H  L  V  *  V  D  S  G  K  K  I  S  S  P  R  R  L  L  W  I  Q  P  F  A  A  V  S  K  F  K  T  L  S  C  T  C  A  N  G  L  F  L  S  S  S  T  S  A  Q  K  Q  D  S  E  R  A  P  A  C  T  L  S  K  C  S  N  H  L  C  V  N  R  *  R  L  G  L  A  L  I  K  *  G  P  V  S  S  F  F  K  C  L  *  *  F  A  I  S  K  G  S  T  C  L  R  N  C  V  P  S  S  I  Q  S  L  R  P  S  K  L  S  G  S  S  Y  L  F  N  I  S  M  I  S  S  H  I  P  A  S  S  S  L  L  T  L  A  L  K  S  S  S  V  F  *  I  L  N  A  S  *  Y  P  T  L  R  I  S  H  L  V  *  Y  S   : C  Q   : V  D  *  L  I  S  D  F  N  S  F  S  N  F  H  H  F  C  F  L  A  A  *  R  L  Q  L  Y  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61952" stop="61746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDSGKKISSPRRLLWIQPFAAVSKFKTLSCTCANGLFLSSSTSAQKQDSERAPACTLSKCSNHLCVNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61948" stop="61754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQGRKYHRQEGYSGSSHLQLFLNSKPCLALVQMACFLVPQLLPRNKTRNVHQLALYQNALTISV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64761" PGL_stop="63615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64761" e_stop="63615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="64761" e_stop="63615" e_length="1147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64761" stop="63965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64411" stop="63719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64411" stop="63721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64226" stop="63615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64204" stop="63619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436283" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCTCCAAGCAGGAACTTAATGGTGGGGGCGGGGTTTGTGAGCAGGGGATGCAGGTTACTAATGAAAAGGGCCAATTGATGAAGAAGTTTGCTATAAAGCCGAGAGGAGAAGCAGAGGAAAGTGGGGGTTACATGAACACCTACAGTGATTTTGATTCACCTTCTAATAGCCCCACCAGTCACACTAGTAGTGTGTTGGAAGGAAATTATTCTGGGACCAATTTCACTGGTGGCAGCGGCAGTAGCAGCAGTAGTAGCAGTGGCGGTTTTAGTAGCAGTGGTGGGTGTTGCTCAGTAAGTATGAGTGAGGAAGATAACGAAGGGGACGATGACTGCTTGGATGATTGGGAAGCTGTTGCTGATGCTTTAGCTGCCACTGATAAGGAGCAGGAGCAGCATAACTCTAGCTTGGATTCAGCTCCACAGGTTCATATGAGTTTTCAACAAGAAGTTTCTGACGGGAAGGTACCAGCGCTGGATACATCACAGCAGAATCCCAAGGGCAGAGGAACTATACCTGTATTTCCTGTCAGCTTTCAGGCGTGGAGGCCCGATGATGAATTCCGTCCCCAAAGTCTTCCAAATTTGTCAAAACAATATACTTTCCCTATGAATTCAGGGCGTCATTGCCGGGGAGGCTCTGTCTGGGGATGTAAAAGTGCAGCGATACCCACATCATGTCCTATATGCTGTGAGGATTTGGATTTTACCGATACAAGTTTTCTCCCTTGTCCTTGCGGATTTAGGCTTTGTCTCTTTTGTCACAAGAAGATTCTTGAGGAGGATGGGCGTTGTCCAGCTTGCAGGAAGCAGTATAAACATGACACAGTTGGGGGAGAGACAACCAAAGATGCAGGCGGCCTGATGTTTAAAGTGGCTCGTTCCTGTAGCATGATCTCAAGGTCGTAGGAAGATTCTGTTTTTCTATGAATGTGTATGTTGTGTCCTCTTTCTCTGCGTGGCTTGACTTTGTTAGACTCCAATTTTTCTTAGCATTAGATGTTGATATAGGATCGAGATTCTGAAAGCACAGGGGAACTGTTATAGTTCTCTTATAATTTTTCTCATTATAGATATGATGCTTGTGCTGATGTAGAAGACTCCTTATGTGAATAGATAAGGTGGATAAAGGTTAGATAGATTG</gDNA_template>
            <first_frame> K  V  S  K  Q  E  L  N  G  G  G  G  V  C  E  Q  G  M  Q  V  T  N  E  K  G  Q  L  M  K  K  F  A  I  K  P  R  G  E  A  E  E  S  G  G  Y  M  N  T  Y  S  D  F  D  S  P  S  N  S  P  T  S  H  T  S  S  V  L  E  G  N  Y  S  G  T  N  F  T  G  G  S  G  S  S  S  S  S  S  S  G  G  F  S  S  S  G  G  C  C  S  V  S  M  S  E  E  D  N  E  G  D  D  D  C  L  D  D  W  E  A  V  A  D  A  L  A  A  T  D  K  E  Q  E  Q  H  N  S  S  L  D  S  A  P  Q  V  H  M  S  F  Q  Q  E  V  S  D  G  K  V  P  A  L  D  T  S  Q  Q  N  P  K  G  R  G  T  I  P  V  F  P  V  S  F  Q  A  W  R  P  D  D  E  F  R  P  Q  S  L  P  N  L  S  K  Q  Y  T  F  P  M  N  S  G  R  H  C  R  G  G  S  V  W  G  C  K  S  A  A  I  P  T  S  C  P  I  C  C  E  D  L  D  F  T  D  T  S  F  L  P  C  P  C  G  F  R  L  C  L  F  C  H  K  K  I  L  E  E  D  G  R  C  P  A  C  R  K  Q  Y  K  H  D  T  V  G  G  E  T  T  K  D  A  G  G  L  M  F  K  V  A  R  S  C  S  M  I  S  R  S  *  E  D  S  V  F  L  *  M  C  M  L  C  P  L  S  L  R  G  L  T  L  L  D  S  N  F  S  *  H  *  M  L  I  *  D  R  D  S  E  S  T  G  E  L  L  *  F  S  Y  N  F  S  H  Y  R  Y  D  A  C  A  D  V  E  D  S  L  C  E  *  I  R  W  I  K  V  R  *  I  </first_frame>
            <second_frame>  K  S  P  S  R  N  L  M  V  G  A  G  F  V  S  R  G  C  R  L  L  M  K  R  A  N  *  *  R  S  L  L  *  S  R  E  E  K  Q  R  K  V  G  V  T  *  T  P  T  V  I  L  I  H  L  L  I  A  P  P  V  T  L  V  V  C  W  K  E  I  I  L  G  P  I  S  L  V  A  A  A  V  A  A  V  V  A  V  A  V  L  V  A  V  V  G  V  A  Q  *  V  *  V  R  K  I  T  K  G  T  M  T  A  W  M  I  G  K  L  L  L  M  L  *  L  P  L  I  R  S  R  S  S  I  T  L  A  W  I  Q  L  H  R  F  I  *  V  F  N  K  K  F  L  T  G  R  Y  Q  R  W  I  H  H  S  R  I  P  R  A  E  E  L  Y  L  Y  F  L  S  A  F  R  R  G  G  P  M  M  N  S  V  P  K  V  F  Q  I  C  Q  N  N  I  L  S  L  *  I  Q  G  V  I  A  G  E  A  L  S  G  D  V  K  V  Q  R  Y  P  H  H  V  L  Y  A  V  R  I  W  I  L  P  I  Q  V  F  S  L  V  L  A  D  L  G  F  V  S  F  V  T  R  R  F  L  R  R  M  G  V  V  Q  L  A  G  S  S  I  N  M  T  Q  L  G  E  R  Q  P  K  M  Q  A  A  *  C  L  K  W  L  V  P  V  A  *  S  Q  G  R  R  K  I  L  F  F  Y  E  C  V  C  C  V  L  F  L  C  V  A  *  L  C  *  T  P  I  F  L  S  I  R  C  *  Y  R  I  E  I  L  K  A  Q  G  N  C  Y  S  S  L  I  I  F  L  I  I  D  M  M  L  V  L  M  *  K  T  P  Y  V  N  R  *  G  G  *  R  L  D  R  L </second_frame>
            <third_frame>   S  L  Q  A  G  T  *  W  W  G  R  G  L  *  A  G  D  A  G  Y  *  *  K  G  P  I  D  E  E  V  C  Y  K  A  E  R  R  S  R  G  K  W  G  L  H  E  H  L  Q  *  F  *  F  T  F  *  *  P  H  Q  S  H  *  *  C  V  G  R  K  L  F  W  D  Q  F  H  W  W  Q  R  Q  *  Q  Q  *  *  Q  W  R  F  *  *  Q  W  W  V  L  L  S  K  Y  E  *  G  R  *  R  R  G  R  *  L  L  G  *  L  G  S  C  C  *  C  F  S  C  H  *  *  G  A  G  A  A  *  L  *  L  G  F  S  S  T  G  S  Y  E  F  S  T  R  S  F  *  R  E  G  T  S  A  G  Y  I  T  A  E  S  Q  G  Q  R  N  Y  T  C  I  S  C  Q  L  S  G  V  E  A  R  *  *  I  P  S  P  K  S  S  K  F  V  K  T  I  Y  F  P  Y  E  F  R  A  S  L  P  G  R  L  C  L  G  M  *  K  C  S  D  T  H  I  M  S  Y  M  L  *  G  F  G  F  Y  R  Y  K  F  S  P  L  S  L  R  I  *  A  L  S  L  L  S  Q  E  D  S  *  G  G  W  A  L  S  S  L  Q  E  A  V  *  T  *  H  S  W  G  R  D  N  Q  R  C  R  R  P  D  V  *  S  G  S  F  L  *  H  D  L  K  V  V  G  R  F  C  F  S  M  N  V  Y  V  V  S  S  F  S  A  W  L  D  F  V  R  L  Q  F  F  L  A  L  D  V  D  I  G  S  R  F  *  K  H  R  G  T  V  I  V  L  L  *  F  F  S  L  *  I  *  C  L  C  *  C  R  R  L  L  M  *  I  D  K  V  D  K  G  *  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64761" stop="63850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSKQELNGGGGVCEQGMQVTNEKGQLMKKFAIKPRGEAEESGGYMNTYSDFDSPSNSPTSHTSSVLEGNYSGTNFTGGSGSSSSSSSGGFSSSGGCCSVSMSEEDNEGDDDCLDDWEAVADALAATDKEQEQHNSSLDSAPQVHMSFQQEVSDGKVPALDTSQQNPKGRGTIPVFPVSFQAWRPDDEFRPQSLPNLSKQYTFPMNSGRHCRGGSVWGCKSAAIPTSCPICCEDLDFTDTSFLPCPCGFRLCLFCHKKILEEDGRCPACRKQYKHDTVGGETTKDAGGLMFKVARSCSMISRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71254" PGL_stop="68661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71254" e_stop="71100"/>
            <exon e_start="70621" e_stop="70603"/>
            <exon e_start="69299" e_stop="69277"/>
            <exon e_start="69179" e_stop="69139"/>
            <exon e_start="68897" e_stop="68661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.959" e_score="0.916"/>
          <exon-intron don_prob="0.039" acc_prob="0.915" e_score="0.632"/>
          <exon-intron don_prob="0.725" acc_prob="0.961" e_score="0.565"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.561"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="71254" e_stop="71100" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.959">
            <gDNA_intron_boundary i_start="71099" i_stop="70622" i_length="478"/>
          </intron>
          <exon e_serial="2" e_score="0.632">
            <gDNA_exon_boundary e_start="70621" e_stop="70603" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="0.039" acc_prob="0.915">
            <gDNA_intron_boundary i_start="70602" i_stop="69300" i_length="1303"/>
          </intron>
          <exon e_serial="3" e_score="0.565">
            <gDNA_exon_boundary e_start="69299" e_stop="69277" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.725" acc_prob="0.961">
            <gDNA_intron_boundary i_start="69276" i_stop="69180" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.561">
            <gDNA_exon_boundary e_start="69179" e_stop="69139" e_length="41"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69138" i_stop="68898" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="0.903">
            <gDNA_exon_boundary e_start="68897" e_stop="68661" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71254" stop="71100"/>
              <exon start="70621" stop="70603"/>
              <exon start="69299" stop="69277"/>
              <exon start="69179" stop="69139"/>
              <exon start="68897" stop="68661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAAGGCAAACGCCGGGAAATGGGAGCAGCAAGCAAGGCAGGGGACTTGTTATTTAAGGCCTTCGTCGGAGGGCTCGGTGTCACCACCATTTACCTCACGGCCACATTTTCCGTCAACGTATACCGTGGTCTCTCTTGGCATAAAGCACAATCG : ATAAACGAATTGGAACGGA : GCTGATGTTGTGCTATGAGTCAA : GCACCTGGCTATGCATCACATATGCTCCCTGCACATTTTGT : TCCTACCCTTGGGGTCCTTCCAGAAATTTCGGAGTATATCTGAATCTTGTCGCATTATGTAACGACTTTTTCACAGTTTGTCCGTAGGATATTTAAAACACAGCAGCACTTCATAATCTTCTCCATCCAACAAACAAATTGGATGGACAAAGTATGTCATGTTTATTCAAATTCCATTGCTATATTGTTGCTGAAATTCTACACAAATACATTTGGAGTTCCACAGTTGTATGATTA</gDNA_template>
            <first_frame> S  K  A  N  A  G  K  W  E  Q  Q  A  R  Q  G  T  C  Y  L  R  P  S  S  E  G  S  V  S  P  P  F  T  S  R  P  H  F  P  S  T  Y  T  V  V  S  L  G  I  K  H  N  R :   *  T  N  W  N  G  :  A  D  V  V  L  *  V  K :   H  L  A  M  H  H  I  C  S  L  H  I  L   : F  L  P  L  G  S  F  Q  K  F  R  S  I  S  E  S  C  R  I  M  *  R  L  F  H  S  L  S  V  G  Y  L  K  H  S  S  T  S  *  S  S  P  S  N  K  Q  I  G  W  T  K  Y  V  M  F  I  Q  I  P  L  L  Y  C  C  *  N  S  T  Q  I  H  L  E  F  H  S  C  M  I  </first_frame>
            <second_frame>  R  R  Q  T  P  G  N  G  S  S  K  Q  G  R  G  L  V  I  *  G  L  R  R  R  A  R  C  H  H  H  L  P  H  G  H  I  F  R  Q  R  I  P  W  S  L  L  A  *  S  T  I   : D  K  R  I  G  T  E :   L  M  L  C  Y  E  S   : S  T  W  L  C  I  T  Y  A  P  C  T  F  C  :  S  Y  P  W  G  P  S  R  N  F  G  V  Y  L  N  L  V  A  L  C  N  D  F  F  T  V  C  P  *  D  I  *  N  T  A  A  L  H  N  L  L  H  P  T  N  K  L  D  G  Q  S  M  S  C  L  F  K  F  H  C  Y  I  V  A  E  I  L  H  K  Y  I  W  S  S  T  V  V  *  L </second_frame>
            <third_frame>   E  G  K  R  R  E  M  G  A  A  S  K  A  G  D  L  L  F  K  A  F  V  G  G  L  G  V  T  T  I  Y  L  T  A  T  F  S  V  N  V  Y  R  G  L  S  W  H  K  A  Q  S  :  I  N  E  L  E  R   : S  *  C  C  A  M  S  Q  :  A  P  G  Y  A  S  H  M  L  P  A  H  F  V :   P  T  L  G  V  L  P  E  I  S  E  Y  I  *  I  L  S  H  Y  V  T  T  F  S  Q  F  V  R  R  I  F  K  T  Q  Q  H  F  I  I  F  S  I  Q  Q  T  N  W  M  D  K  V  C  H  V  Y  S  N  S  I  A  I  L  L  L  K  F  Y  T  N  T  F  G  V  P  Q  L  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68854" stop="68663"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSHYVTTFSQFVRRIFKTQQHFIIFSIQQTNWMDKVCHVYSNSIAILLLKFYTNTFGVPQLYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="76117" PGL_stop="73052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76117" e_stop="75481"/>
            <exon e_start="73326" e_stop="73052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76117" e_stop="75481" e_length="637"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="75480" i_stop="73327" i_length="2154"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="73326" e_stop="73052" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76117" stop="75481"/>
              <exon start="73326" stop="73052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAATTCATGCTGCTGAAGGAAATCTGTCAGATAGGGAAATCATTCAAAATGAAACATTTTCTGAACATTCTTTGAAGTTGGAAAACATGACAACCAATAATTTCTTGACAGATGATTCAACTGTAGCCAGAGGCAATGCTCCAAGTGAAGATTCTTCTGAGATGGCCCAAGGATTGTCCACAGGAAAAGGTGAGCAAGTCATGGAGATGGGATATGCAGAAAGTTCTGATAATAAACCGCAGTCTATTGAGGCTTCTGGTGTTCATTATGAAATAGATGAGCATGAGGACTTGATGGGGAAGATGGATCTTTCAGAAGAAGATATTGAGAATGTTTGCAATCAGTTGTTCTTTATAAAAGATCTTTGCAATCAACTGTTAAAGTCAGAGTCAAGTGTGACTGATGTAAACAATCGGGTCCCTAGCCAACCTATAAATGATAGAGTGTTTAAGTACACATACAAAAGAAAGAGGAAAAGAGAATTGTTGAGTGTATCTGATGAGAAAGCTTCAATTGCAAAGAGCTCTCAAACAAAAAACATGTGTGAAACTAGATAGTCTTTTCAAGACACAGGATGAGTTCATTGACAGAATCATCTCAGGACAGTTGGCAAATGGCATTAGGTTGCTCAACAG : CTAATGTGTCTCTCTAAGAAGTGCTAGTGAAATTGTGTGTGCCTTGTCTTCTGTGCTATAAAATAAGGAATGTCTTCTGTCAGCTATCTCTGAGATTCATTATGTCATTAAGGATGGAGGTTTACGAGTGAGATGCACTATCCAATTGATTGTTTACATGTCCAGCAGAGGCCGTATATAGCCTTAATGCATCGGATAACTTTTTCCCAGATCATGTTTTTGTATCGAGAAATTCACTAATTAGTGAACCTAGTTTTATTGTATATTAACTTGAG</gDNA_template>
            <first_frame> D  N  S  C  C  *  R  K  S  V  R  *  G  N  H  S  K  *  N  I  F  *  T  F  F  E  V  G  K  H  D  N  Q  *  F  L  D  R  *  F  N  C  S  Q  R  Q  C  S  K  *  R  F  F  *  D  G  P  R  I  V  H  R  K  R  *  A  S  H  G  D  G  I  C  R  K  F  *  *  *  T  A  V  Y  *  G  F  W  C  S  L  *  N  R  *  A  *  G  L  D  G  E  D  G  S  F  R  R  R  Y  *  E  C  L  Q  S  V  V  L  Y  K  R  S  L  Q  S  T  V  K  V  R  V  K  C  D  *  C  K  Q  S  G  P  *  P  T  Y  K  *  *  S  V  *  V  H  I  Q  K  K  E  E  K  R  I  V  E  C  I  *  *  E  S  F  N  C  K  E  L  S  N  K  K  H  V  *  N  *  I  V  F  S  R  H  R  M  S  S  L  T  E  S  S  Q  D  S  W  Q  M  A  L  G  C  S  T   : A  N  V  S  L  *  E  V  L  V  K  L  C  V  P  C  L  L  C  Y  K  I  R  N  V  F  C  Q  L  S  L  R  F  I  M  S  L  R  M  E  V  Y  E  *  D  A  L  S  N  *  L  F  T  C  P  A  E  A  V  Y  S  L  N  A  S  D  N  F  F  P  D  H  V  F  V  S  R  N  S  L  I  S  E  P  S  F  I  V  Y  *  L  E </first_frame>
            <second_frame>  I  I  H  A  A  E  G  N  L  S  D  R  E  I  I  Q  N  E  T  F  S  E  H  S  L  K  L  E  N  M  T  T  N  N  F  L  T  D  D  S  T  V  A  R  G  N  A  P  S  E  D  S  S  E  M  A  Q  G  L  S  T  G  K  G  E  Q  V  M  E  M  G  Y  A  E  S  S  D  N  K  P  Q  S  I  E  A  S  G  V  H  Y  E  I  D  E  H  E  D  L  M  G  K  M  D  L  S  E  E  D  I  E  N  V  C  N  Q  L  F  F  I  K  D  L  C  N  Q  L  L  K  S  E  S  S  V  T  D  V  N  N  R  V  P  S  Q  P  I  N  D  R  V  F  K  Y  T  Y  K  R  K  R  K  R  E  L  L  S  V  S  D  E  K  A  S  I  A  K  S  S  Q  T  K  N  M  C  E  T  R  *  S  F  Q  D  T  G  *  V  H  *  Q  N  H  L  R  T  V  G  K  W  H  *  V  A  Q  Q  :  L  M  C  L  S  K  K  C  *  *  N  C  V  C  L  V  F  C  A  I  K  *  G  M  S  S  V  S  Y  L  *  D  S  L  C  H  *  G  W  R  F  T  S  E  M  H  Y  P  I  D  C  L  H  V  Q  Q  R  P  Y  I  A  L  M  H  R  I  T  F  S  Q  I  M  F  L  Y  R  E  I  H  *  L  V  N  L  V  L  L  Y  I  N  L   </second_frame>
            <third_frame>   *  F  M  L  L  K  E  I  C  Q  I  G  K  S  F  K  M  K  H  F  L  N  I  L  *  S  W  K  T  *  Q  P  I  I  S  *  Q  M  I  Q  L  *  P  E  A  M  L  Q  V  K  I  L  L  R  W  P  K  D  C  P  Q  E  K  V  S  K  S  W  R  W  D  M  Q  K  V  L  I  I  N  R  S  L  L  R  L  L  V  F  I  M  K  *  M  S  M  R  T  *  W  G  R  W  I  F  Q  K  K  I  L  R  M  F  A  I  S  C  S  L  *  K  I  F  A  I  N  C  *  S  Q  S  Q  V  *  L  M  *  T  I  G  S  L  A  N  L  *  M  I  E  C  L  S  T  H  T  K  E  R  G  K  E  N  C  *  V  Y  L  M  R  K  L  Q  L  Q  R  A  L  K  Q  K  T  C  V  K  L  D  S  L  F  K  T  Q  D  E  F  I  D  R  I  I  S  G  Q  L  A  N  G  I  R  L  L  N  S :   *  C  V  S  L  R  S  A  S  E  I  V  C  A  L  S  S  V  L  *  N  K  E  C  L  L  S  A  I  S  E  I  H  Y  V  I  K  D  G  G  L  R  V  R  C  T  I  Q  L  I  V  Y  M  S  S  R  G  R  I  *  P  *  C  I  G  *  L  F  P  R  S  C  F  C  I  E  K  F  T  N  *  *  T  *  F  Y  C  I  L  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76116" stop="75559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIHAAEGNLSDREIIQNETFSEHSLKLENMTTNNFLTDDSTVARGNAPSEDSSEMAQGLSTGKGEQVMEMGYAESSDNKPQSIEASGVHYEIDEHEDLMGKMDLSEEDIENVCNQLFFIKDLCNQLLKSESSVTDVNNRVPSQPINDRVFKYTYKRKRKRELLSVSDEKASIAKSSQTKNMCETR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="82559" PGL_stop="76462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82559" e_stop="82303"/>
            <exon e_start="80849" e_stop="80742"/>
            <exon e_start="79396" e_stop="79220"/>
            <exon e_start="76617" e_stop="76462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82559" e_stop="82303" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82302" i_stop="80850" i_length="1453"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80849" e_stop="80742" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80741" i_stop="79397" i_length="1345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79396" e_stop="79220" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.635" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79219" i_stop="76618" i_length="2602"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="76617" e_stop="76462" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82559" stop="82303"/>
              <exon start="80849" stop="80742"/>
              <exon start="79396" stop="79220"/>
              <exon start="76617" stop="76465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82558" stop="82303"/>
              <exon start="80849" stop="80742"/>
              <exon start="79396" stop="79224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82557" stop="82303"/>
              <exon start="80849" stop="80742"/>
              <exon start="79396" stop="79220"/>
              <exon start="76617" stop="76462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGATTGAAAATATTCTCAGCTCCATTAACTCCATTCCCAACCGATAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACACAGAAAGGCAATCAATGAGTCAAAACCTCATTTCATAGATAAACTGTAGCTTTAATATTTCCAAATCAAATTTGGGGATTTCTTGTTATATCGAGTTTCGCGATAAATTGAAGCTATAAATCTTCGGAAAAGCTTGGAATCGAGTTAATTTTTCTGTGTTAGAGCCTTGAG : CAAAAAAAAAACCACCTTCGCAAATTTTGCTCTTCACATTTTGGTCTGGAAAACCTCAAACGACAGCTTTGTGCTTAGTTCAAGGAAACAGCAATGGATGCCGACGAG : AGATTAAAAGCTTTAGAAAAGGCATATACGGATGTAGTCTTGAACACAGAGAAAGAAGCAGCGACGAGGATTATGGTGTCGGAACAGAAAGCTCAATGTTTTCAAGAGGAGCTCCAAGTGGTGAAAGAAAAGGGGCTAATGACGCTGATGAAGCTCAAAGAGATGATGGATTCTAAG : ATTATTGAAGCAGAGTTAACATCGTTGAGTCAACAGAGGAAGATTGAAGAACTTGAATCTCAACTAGAGGAAGCAGAAGATATTGTAAGTGATCTCAGGGTTGAGTTGAGAGAAGTTCAAGCTGAACTTGAGAAAGTCGCCAGCAAAGAAAAAGAA</gDNA_template>
            <first_frame> T  D  *  K  Y  S  Q  L  H  *  L  H  S  Q  P  I  I  C  G  R  R  G  G  V  K  E  Q  K  H  R  K  A  I  N  E  S  K  P  H  F  I  D  K  L  *  L  *  Y  F  Q  I  K  F  G  D  F  L  L  Y  R  V  S  R  *  I  E  A  I  N  L  R  K  S  L  E  S  S  *  F  F  C  V  R  A  L  S :   K  K  K  T  T  F  A  N  F  A  L  H  I  L  V  W  K  T  S  N  D  S  F  V  L  S  S  R  K  Q  Q  W  M  P  T  R :   D  *  K  L  *  K  R  H  I  R  M  *  S  *  T  Q  R  K  K  Q  R  R  G  L  W  C  R  N  R  K  L  N  V  F  K  R  S  S  K  W  *  K  K  R  G  *  *  R  *  *  S  S  K  R  *  W  I  L  R :   L  L  K  Q  S  *  H  R  *  V  N  R  G  R  L  K  N  L  N  L  N  *  R  K  Q  K  I  L  *  V  I  S  G  L  S  *  E  K  F  K  L  N  L  R  K  S  P  A  K  K  K   </first_frame>
            <second_frame>  P  I  E  N  I  L  S  S  I  N  S  I  P  N  R  *  F  V  D  E  E  E  A  *  K  N  K  N  T  E  R  Q  S  M  S  Q  N  L  I  S  *  I  N  C  S  F  N  I  S  K  S  N  L  G  I  S  C  Y  I  E  F  R  D  K  L  K  L  *  I  F  G  K  A  W  N  R  V  N  F  S  V  L  E  P  *   : A  K  K  K  P  P  S  Q  I  L  L  F  T  F  W  S  G  K  P  Q  T  T  A  L  C  L  V  Q  G  N  S  N  G  C  R  R   : E  I  K  S  F  R  K  G  I  Y  G  C  S  L  E  H  R  E  R  S  S  D  E  D  Y  G  V  G  T  E  S  S  M  F  S  R  G  A  P  S  G  E  R  K  G  A  N  D  A  D  E  A  Q  R  D  D  G  F  *   : D  Y  *  S  R  V  N  I  V  E  S  T  E  E  D  *  R  T  *  I  S  T  R  G  S  R  R  Y  C  K  *  S  Q  G  *  V  E  R  S  S  S  *  T  *  E  S  R  Q  Q  R  K  R  </second_frame>
            <third_frame>   R  L  K  I  F  S  A  P  L  T  P  F  P  T  D  N  L  W  T  K  R  R  R  E  R  T  K  T  Q  K  G  N  Q  *  V  K  T  S  F  H  R  *  T  V  A  L  I  F  P  N  Q  I  W  G  F  L  V  I  S  S  F  A  I  N  *  S  Y  K  S  S  E  K  L  G  I  E  L  I  F  L  C  *  S  L  E  :  Q  K  K  N  H  L  R  K  F  C  S  S  H  F  G  L  E  N  L  K  R  Q  L  C  A  *  F  K  E  T  A  M  D  A  D  E  :  R  L  K  A  L  E  K  A  Y  T  D  V  V  L  N  T  E  K  E  A  A  T  R  I  M  V  S  E  Q  K  A  Q  C  F  Q  E  E  L  Q  V  V  K  E  K  G  L  M  T  L  M  K  L  K  E  M  M  D  S  K  :  I  I  E  A  E  L  T  S  L  S  Q  Q  R  K  I  E  E  L  E  S  Q  L  E  E  A  E  D  I  V  S  D  L  R  V  E  L  R  E  V  Q  A  E  L  E  K  V  A  S  K  E  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80771" stop="80742"/>
                    <exon start="79396" stop="79220"/>
                    <exon start="76617" stop="76462"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKETAMDADERLKALEKAYTDVVLNTEKEAATRIMVSEQKAQCFQEELQVVKEKGLMTLMKLKEMMDSKIIEAELTSLSQQRKIEELESQLEEAEDIVSDLRVELREVQAELEKVASKEKE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82303" stop="80742"/>
                    <exon start="79396" stop="79221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKKKPPSQILLFTFWSGKPQTTALCLVQGNSNGCRREIKSFRKGIYGCSLEHRERSSDEDYGVGTESSMFSRGAPSGERKGANDADEAQRDDGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="99045" PGL_stop="101249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99045" e_stop="99455"/>
            <exon e_start="99892" e_stop="100100"/>
            <exon e_start="100565" e_stop="101226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99045" e_stop="99455" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.964">
            <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99892" e_stop="100100" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="100101" i_stop="100564" i_length="464"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100565" e_stop="101226" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99045" stop="99455"/>
              <exon start="99892" stop="99991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99050" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99050" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99455"/>
              <exon start="99892" stop="100018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99455"/>
              <exon start="99892" stop="99971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99052" stop="99455"/>
              <exon start="99892" stop="100031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99455"/>
              <exon start="99892" stop="100031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99056" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99056" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99056" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99056" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99056" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99057" stop="99455"/>
              <exon start="99892" stop="100100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99057" stop="99383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99058" stop="99412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99060" stop="99455"/>
              <exon start="99892" stop="100065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99455"/>
              <exon start="99892" stop="100100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99455"/>
              <exon start="99892" stop="100030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99062" stop="99455"/>
              <exon start="99892" stop="100056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99455"/>
              <exon start="99892" stop="100089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99455"/>
              <exon start="99892" stop="100080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99067" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99073" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99073" stop="99320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99076" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99076" stop="99455"/>
              <exon start="99892" stop="99960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99082" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99083" stop="99455"/>
              <exon start="99892" stop="99954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99087" stop="99455"/>
              <exon start="99892" stop="100100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99091" stop="99455"/>
              <exon start="99892" stop="100003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99102" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99166" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99213" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99216" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99218" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99221" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99248" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99291" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="101000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99294" stop="99455"/>
              <exon start="99892" stop="100100"/>
              <exon start="100565" stop="100804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99342" stop="99455"/>
              <exon start="99892" stop="99969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99909" stop="100100"/>
              <exon start="100565" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99952" stop="100100"/>
              <exon start="100565" stop="101093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99969" stop="100100"/>
              <exon start="100565" stop="101226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100004" stop="100100"/>
              <exon start="100565" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100014" stop="100100"/>
              <exon start="100565" stop="101166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100045" stop="100100"/>
              <exon start="100565" stop="101021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100045" stop="100100"/>
              <exon start="100565" stop="101014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100081" stop="100100"/>
              <exon start="100565" stop="101016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100565" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100565" stop="101012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100724" stop="101211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="101013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100823" stop="101101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596595" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100860" stop="101217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGGGTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG : GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCG : GTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCTACTACTAAA</gDNA_template>
            <first_frame> F  G  F  F  F  L  S  I  S  I  G  V  Y  G  F  Q  L  T  K  C  M  F  S  H  Q  H  F  V  *  I  D  F  F  I  D  S  W  N  L  P  E  R  C  R  A  F  A  V  I  S  R  R  R  R  R  R  *  P  A  A  V  L  E  E  K  S  C  C  L  V  *  E  *  K  W  I  L  *  G  R  A  *  V  *  T  I  F  H  S  T  S  N  R  M  L  T  T  T  T  T  T  A  A  V  I  T  M  N  P  L  K  W  R  R  M  K  V  M  P  L  Q  M  T  R  F  N  I  S  P  T  V  V  A  S  V  R  E  :  E  F  R  G  Q  R  K  S  I  S  Y  S  F  *  D  C  K  K  L  E  K  E  T  G  E  E  S  L  V  T  S  *  R  L  A  H  R  H  R  L  Q  V  M  L  R  N  T  S  S  G  E  A  T  S  T  V  A  A  V  D  L  A  S  L  I  S  P  L  T  R :   Y  Q  *  C  Q  *  K  R  W  K  I  S  K  K  S  Q  F  Q  H  Q  Q  H  Y  L  L  *  K  L  P  K  P  M  H  F  R  W  H  R  L  L  L  L  S  Y  F  Q  Y  R  L  I  S  Q  E  R  I  Q  L  C  F  D  M  I  M  R  I  H  R  C  *  L  V  L  F  L  C  F  Q  C  L  I  H  Q  N  R  S  T  L  T  P  T  T  I  Q  Q  S  S  H  R  R  C  H  *  D  Y  H  C  H  L  I  R  D  K  H  H  L  L  D  T  R  H  I  M  *  C  Q  V  S  V  M  E  K  A  S  S  V  W  H  E  R  D  Q  R  I  S  G  E  R  K  K  R  R  R  K  N  *  D  K  E  *  V  S  W  V  H  N  Y  I  N  L  I  Y  *  G  K  V  Y  V  R  R  Y  P  Y  V  I  N  *  L  D  F  W  S  *  F  V  Q  T  R  N  M  S  C  F  V  V  P  I  *  C  Y  S  Y  L  *  H  Q  N  P  Y  Y  *  </first_frame>
            <second_frame>  S  G  F  S  S  F  Q  F  Q  *  V  C  T  V  F  N  *  R  S  V  C  L  V  I  N  T  L  Y  K  L  I  F  L  L  I  R  G  I  F  Q  K  D  V  E  R  L  Q  *  *  V  V  V  D  A  G  G  N  R  R  R  F  W  R  R  N  H  V  V  W  C  E  S  K  S  G  S  Y  E  E  E  R  E  S  E  R  S  F  T  V  R  A  T  E  C  *  Q  Q  Q  Q  Q  R  R  R  *  *  Q  *  I  L  *  S  G  A  G  *  R  L  C  L  C  R  *  R  G  S  T  S  V  Q  Q  W  S  R  A  *  E  R :   S  S  V  D  R  G  R  A  *  V  I  P  F  R  I  A  K  S  W  K  R  R  L  E  R  N  L  S  *  L  R  K  D  S  H  T  D  T  G  C  K  S  C  S  E  I  L  P  P  A  K  Q  P  Q  P  S  P  P  S  I  *  P  L  *  Y  H  H  *  L   : G  I  S  N  A  N  R  R  G  G  K  *  A  R  N  P  S  S  S  T  S  N  I  T  S  C  R  N  Y  Q  N  Q  C  I  F  G  G  T  G  C  C  S  Y  H  I  S  S  T  G  *  *  V  K  R  E  S  N  S  V  S  T  *  S  C  E  F  I  D  A  S  W  S  C  S  Y  V  F  N  A  *  S  I  K  I  D  R  P  *  R  Q  P  Q  F  N  N  R  A  I  V  V  V  T  E  I  I  I  V  T  *  S  G  T  S  I  I  Y  *  T  L  G  I  *  C  D  V  K  F  Q  *  W  R  K  H  H  P  C  G  M  R  E  I  K  G  S  L  E  K  E  K  K  E  E  E  K  T  R  T  K  S  E  *  A  G  F  I  I  I  L  I  L  Y  I  E  E  K  F  M  *  G  D  I  H  M  *  L  I  D  *  T  F  G  P  D  L  Y  R  P  E  I  C  H  A  L  W  Y  L  F  N  A  T  L  I  Y  N  I  K  I  P  T  T  K </second_frame>
            <third_frame>   R  V  F  L  P  F  N  F  N  R  C  V  R  F  S  I  D  E  V  Y  V  *  S  S  T  L  C  I  N  *  F  F  Y  *  F  V  E  S  S  R  K  M  S  S  V  C  S  D  K  S  S  S  T  P  A  V  T  G  G  G  F  G  G  E  I  M  L  F  G  V  R  V  K  V  D  P  M  R  K  S  V  S  L  N  D  L  S  Q  Y  E  Q  P  N  A  N  N  N  N  N  N  G  G  G  D  N  N  E  S  S  K  V  A  Q  D  E  G  Y  A  S  A  D  D  A  V  Q  H  Q  S  N  S  G  R  E  R  K  R   : G  V  P  W  T  E  E  E  H  K  L  F  L  L  G  L  Q  K  V  G  K  G  D  W  R  G  I  S  R  N  F  V  K  T  R  T  P  T  Q  V  A  S  H  A  Q  K  Y  F  L  R  R  S  N  L  N  R  R  R  R  R  S  S  L  F  D  I  T  T  D  S  :  V  S  V  M  P  I  E  E  V  E  N  K  Q  E  I  P  V  P  A  P  A  T  L  P  P  V  E  T  T  K  T  N  A  F  S  V  A  P  A  V  A  P  I  I  F  P  V  Q  V  N  K  S  R  E  N  P  T  L  F  R  H  D  H  A  N  S  S  M  L  V  G  P  V  P  M  F  S  M  P  N  P  S  K  S  I  D  L  N  A  N  H  N  S  T  I  E  P  S  S  L  S  L  R  L  S  L  S  L  D  Q  G  Q  A  S  S  T  R  H  S  A  Y  N  V  M  S  S  F  S  N  G  E  S  I  I  R  V  A  *  E  R  S  K  D  L  W  R  K  K  K  K  K  K  K  K  L  G  Q  R  V  S  K  L  G  S  *  L  Y  *  S  Y  I  L  R  K  S  L  C  K  E  I  S  I  C  D  *  L  T  R  L  L  V  L  I  C  T  D  Q  K  Y  V  M  L  C  G  T  Y  L  M  L  L  L  F  I  T  S  K  S  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99149" stop="99455"/>
                    <exon start="99892" stop="100100"/>
                    <exon start="100565" stop="100978"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVESSRKMSSVCSDKSSSTPAVTGGGFGGEIMLFGVRVKVDPMRKSVSLNDLSQYEQPNANNNNNNGGGDNNESSKVAQDEGYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSVMPIEEVENKQEIPVPAPATLPPVETTKTNAFSVAPAVAPIIFPVQVNKSRENPTLFRHDHANSSMLVGPVPMFSMPNPSKSIDLNANHNSTIEPSSLSLRLSLSLDQGQASSTRHSAYNVMSSFSNGESIIRVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99045" e_stop="99455"/>
            <exon e_start="99892" e_stop="101249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99045" e_stop="99455" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.964">
            <gDNA_intron_boundary i_start="99456" i_stop="99891" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="99892" e_stop="101249" e_length="1358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99045" stop="99455"/>
              <exon start="99892" stop="99991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99455"/>
              <exon start="99892" stop="100018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99455"/>
              <exon start="99892" stop="99971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99052" stop="99455"/>
              <exon start="99892" stop="100031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99455"/>
              <exon start="99892" stop="100031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99057" stop="99455"/>
              <exon start="99892" stop="100100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99057" stop="99383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99058" stop="99412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99060" stop="99455"/>
              <exon start="99892" stop="100065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99455"/>
              <exon start="99892" stop="100100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99455"/>
              <exon start="99892" stop="100030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99062" stop="99455"/>
              <exon start="99892" stop="100056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99455"/>
              <exon start="99892" stop="100089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99455"/>
              <exon start="99892" stop="100080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99073" stop="99320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99076" stop="99455"/>
              <exon start="99892" stop="99960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99083" stop="99455"/>
              <exon start="99892" stop="99954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99087" stop="99455"/>
              <exon start="99892" stop="100100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99091" stop="99455"/>
              <exon start="99892" stop="100003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99342" stop="99455"/>
              <exon start="99892" stop="99969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100066" stop="100882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100066" stop="100805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100079" stop="100761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100080" stop="100558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100080" stop="100431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100464" stop="101159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100564" stop="101249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100565" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100565" stop="101012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100724" stop="101211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="101013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100823" stop="101101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596595" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100860" stop="101217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGGGTTTTTCTTCCTTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG : GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACAAGCATCATCTACTAGACACTCGGCATATAATGTGATGTCAAGTTTCAGTAATGGAGAAAGCATCATCCGTGTGGCATGAGAGAGATCAAAGGATCTCTGGAGAAAGAAAAAAAAGAAGAAGAAAAAACTAGGACAAAGAGTGAGTAAGCTGGGTTCATAATTATATTAATCTTATATATTGAGGAAAAGTTTATGTAAGGAGATATCCATATGTGATTAATTGACTAGACTTTTGGTCCTGATTTGTACAGACCAGAAATATGTCATGCTTTGTGGTACCTATTTAATGCTACTCTTATTTATAACATCAAAATCCCTACTACTAAAGTAGTTTTCCATGGAAAAACACA</gDNA_template>
            <first_frame> F  G  F  F  F  L  S  I  S  I  G  V  Y  G  F  Q  L  T  K  C  M  F  S  H  Q  H  F  V  *  I  D  F  F  I  D  S  W  N  L  P  E  R  C  R  A  F  A  V  I  S  R  R  R  R  R  R  *  P  A  A  V  L  E  E  K  S  C  C  L  V  *  E  *  K  W  I  L  *  G  R  A  *  V  *  T  I  F  H  S  T  S  N  R  M  L  T  T  T  T  T  T  A  A  V  I  T  M  N  P  L  K  W  R  R  M  K  V  M  P  L  Q  M  T  R  F  N  I  S  P  T  V  V  A  S  V  R  E  :  E  F  R  G  Q  R  K  S  I  S  Y  S  F  *  D  C  K  K  L  E  K  E  T  G  E  E  S  L  V  T  S  *  R  L  A  H  R  H  R  L  Q  V  M  L  R  N  T  S  S  G  E  A  T  S  T  V  A  A  V  D  L  A  S  L  I  S  P  L  T  R  Y  S  F  F  I  H  V  F  H  L  S  N  L  F  L  T  L  I  I  N  R  V  K  S  N  N  F  F  E  L  L  Q  L  Y  F  S  H  F  A  I  Y  W  *  I  S  F  E  *  V  V  S  D  C  V  *  R  E  K  I  R  W  F  D  F  N  T  S  I  L  S  L  F  N  R  R  S  S  N  V  I  L  S  L  F  L  F  *  I  D  I  D  A  G  F  L  L  L  F  F  C  V  F  S  L  I  D  S  F  S  L  V  S  S  S  L  F  I  L  A  F  W  K  R  *  K  Y  *  I  L  M  N  T  N  C  H  L  D  I  L  F  F  R  F  S  I  S  K  V  L  F  L  *  Q  A  G  I  S  N  A  N  R  R  G  G  K  *  A  R  N  P  S  S  S  T  S  N  I  T  S  C  R  N  Y  Q  N  Q  C  I  F  G  G  T  G  C  C  S  Y  H  I  S  S  T  G  *  *  V  K  R  E  S  N  S  V  S  T  *  S  C  E  F  I  D  A  S  W  S  C  S  Y  V  F  N  A  *  S  I  K  I  D  R  P  *  R  Q  P  Q  F  N  N  R  A  I  V  V  V  T  E  I  I  I  V  T  *  S  G  T  S  I  I  Y  *  T  L  G  I  *  C  D  V  K  F  Q  *  W  R  K  H  H  P  C  G  M  R  E  I  K  G  S  L  E  K  E  K  K  E  E  E  K  T  R  T  K  S  E  *  A  G  F  I  I  I  L  I  L  Y  I  E  E  K  F  M  *  G  D  I  H  M  *  L  I  D  *  T  F  G  P  D  L  Y  R  P  E  I  C  H  A  L  W  Y  L  F  N  A  T  L  I  Y  N  I  K  I  P  T  T  K  V  V  F  H  G  K  T   </first_frame>
            <second_frame>  S  G  F  S  S  F  Q  F  Q  *  V  C  T  V  F  N  *  R  S  V  C  L  V  I  N  T  L  Y  K  L  I  F  L  L  I  R  G  I  F  Q  K  D  V  E  R  L  Q  *  *  V  V  V  D  A  G  G  N  R  R  R  F  W  R  R  N  H  V  V  W  C  E  S  K  S  G  S  Y  E  E  E  R  E  S  E  R  S  F  T  V  R  A  T  E  C  *  Q  Q  Q  Q  Q  R  R  R  *  *  Q  *  I  L  *  S  G  A  G  *  R  L  C  L  C  R  *  R  G  S  T  S  V  Q  Q  W  S  R  A  *  E  R :   S  S  V  D  R  G  R  A  *  V  I  P  F  R  I  A  K  S  W  K  R  R  L  E  R  N  L  S  *  L  R  K  D  S  H  T  D  T  G  C  K  S  C  S  E  I  L  P  P  A  K  Q  P  Q  P  S  P  P  S  I  *  P  L  *  Y  H  H  *  L  G  I  H  F  L  F  M  S  S  I  Y  Q  T  C  F  S  P  L  L  L  I  E  *  N  L  T  I  S  L  N  Y  Y  N  Y  I  S  L  I  L  P  F  I  G  E  F  P  L  S  R  W  *  V  I  V  Y  R  E  R  K  L  D  G  L  I  L  I  L  R  S  Y  H  S  L  T  E  G  V  V  M  *  F  F  H  C  S  C  F  E  L  I  L  M  L  G  F  C  C  Y  S  F  V  S  F  L  *  *  I  L  F  H  W  C  Q  V  L  C  L  Y  L  P  S  G  K  D  R  N  I  E  F  *  *  I  Q  T  A  T  W  I  F  C  F  S  D  F  P  F  L  R  F  S  F  Y  D  K  Q  V  S  V  M  P  I  E  E  V  E  N  K  Q  E  I  P  V  P  A  P  A  T  L  P  P  V  E  T  T  K  T  N  A  F  S  V  A  P  A  V  A  P  I  I  F  P  V  Q  V  N  K  S  R  E  N  P  T  L  F  R  H  D  H  A  N  S  S  M  L  V  G  P  V  P  M  F  S  M  P  N  P  S  K  S  I  D  L  N  A  N  H  N  S  T  I  E  P  S  S  L  S  L  R  L  S  L  S  L  D  Q  G  Q  A  S  S  T  R  H  S  A  Y  N  V  M  S  S  F  S  N  G  E  S  I  I  R  V  A  *  E  R  S  K  D  L  W  R  K  K  K  K  K  K  K  K  L  G  Q  R  V  S  K  L  G  S  *  L  Y  *  S  Y  I  L  R  K  S  L  C  K  E  I  S  I  C  D  *  L  T  R  L  L  V  L  I  C  T  D  Q  K  Y  V  M  L  C  G  T  Y  L  M  L  L  L  F  I  T  S  K  S  L  L  L  K  *  F  S  M  E  K  H  </second_frame>
            <third_frame>   R  V  F  L  P  F  N  F  N  R  C  V  R  F  S  I  D  E  V  Y  V  *  S  S  T  L  C  I  N  *  F  F  Y  *  F  V  E  S  S  R  K  M  S  S  V  C  S  D  K  S  S  S  T  P  A  V  T  G  G  G  F  G  G  E  I  M  L  F  G  V  R  V  K  V  D  P  M  R  K  S  V  S  L  N  D  L  S  Q  Y  E  Q  P  N  A  N  N  N  N  N  N  G  G  G  D  N  N  E  S  S  K  V  A  Q  D  E  G  Y  A  S  A  D  D  A  V  Q  H  Q  S  N  S  G  R  E  R  K  R   : G  V  P  W  T  E  E  E  H  K  L  F  L  L  G  L  Q  K  V  G  K  G  D  W  R  G  I  S  R  N  F  V  K  T  R  T  P  T  Q  V  A  S  H  A  Q  K  Y  F  L  R  R  S  N  L  N  R  R  R  R  R  S  S  L  F  D  I  T  T  D  S  V  F  I  F  Y  S  C  L  P  F  I  K  L  V  S  H  P  Y  Y  *  S  S  E  I  *  Q  F  L  *  I  T  T  I  I  F  L  S  F  C  H  L  L  V  N  F  L  *  V  G  G  K  *  L  C  I  E  R  E  N  *  M  V  *  F  *  Y  F  D  L  I  T  L  *  Q  K  E  *  *  C  D  S  F  I  V  L  V  L  N  *  Y  *  C  W  V  F  V  V  I  L  L  C  L  F  S  N  R  F  F  F  I  G  V  K  F  F  V  Y  T  C  L  L  E  K  I  E  I  L  N  S  D  E  Y  K  L  P  L  G  Y  F  V  F  Q  I  F  H  F  *  G  S  L  S  M  T  S  R  Y  Q  *  C  Q  *  K  R  W  K  I  S  K  K  S  Q  F  Q  H  Q  Q  H  Y  L  L  *  K  L  P  K  P  M  H  F  R  W  H  R  L  L  L  L  S  Y  F  Q  Y  R  L  I  S  Q  E  R  I  Q  L  C  F  D  M  I  M  R  I  H  R  C  *  L  V  L  F  L  C  F  Q  C  L  I  H  Q  N  R  S  T  L  T  P  T  T  I  Q  Q  S  S  H  R  R  C  H  *  D  Y  H  C  H  L  I  R  D  K  H  H  L  L  D  T  R  H  I  M  *  C  Q  V  S  V  M  E  K  A  S  S  V  W  H  E  R  D  Q  R  I  S  G  E  R  K  K  R  R  R  K  N  *  D  K  E  *  V  S  W  V  H  N  Y  I  N  L  I  Y  *  G  K  V  Y  V  R  R  Y  P  Y  V  I  N  *  L  D  F  W  S  *  F  V  Q  T  R  N  M  S  C  F  V  V  P  I  *  C  Y  S  Y  L  *  H  Q  N  P  Y  Y  *  S  S  F  P  W  K  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99149" stop="99455"/>
                    <exon start="99892" stop="100160"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVESSRKMSSVCSDKSSSTPAVTGGGFGGEIMLFGVRVKVDPMRKSVSLNDLSQYEQPNANNNNNNGGGDNNESSKVAQDEGYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVFIFYSCLPFIKLVSHPYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100493" stop="100978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQTATWIFCFSDFPFLRFSFYDKQVSVMPIEEVENKQEIPVPAPATLPPVETTKTNAFSVAPAVAPIIFPVQVNKSRENPTLFRHDHANSSMLVGPVPMFSMPNPSKSIDLNANHNSTIEPSSLSLRLSLSLDQGQASSTRHSAYNVMSSFSNGESIIRVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="101407" PGL_stop="100804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101407" e_stop="100804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="101407" e_stop="100804" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101407" stop="100804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCTTACAACCCATACACTAGGATTCAAGAAAATCATAATTGCTGCCTAACACATGCACCCAATCAGGATTTGGATAATGTTATCACATGGTCAGCTCATACAACCACCCACATACATATCTATAGGACCACTCTTCATCAAAGATGGTATCTTCATTGTGTTTTTCCATGGAAAACTACTTTAGTAGTAGGGATTTTGATGTTATAAATAAGAGTAGCATTAAATAGGTACCACAAAGCATGACATATTTCTGGTCTGTACAAATCAGGACCAAAAGTCTAGTCAATTAATCACATATGGATATCTCCTTACATAAACTTTTCCTCAATATATAAGATTAATATAATTATGAACCCAGCTTACTCACTCTTTGTCCTAGTTTTTTCTTCTTCTTTTTTTTCTTTCTCCAGAGATCCTTTGATCTCTCTCATGCCACACGGATGATGCTTTCTCCATTACTGAAACTTGACATCACATTATATGCCGAGTGTCTAGTAGATGATGCTTGTCCCTGATCAAGTGACAATGATAATCTCAGTGACAACGACGATGGCTCGATTGTTGAATTGTGGTTGGCGTTAAGGTCGATCGATTTTGATGGA</gDNA_template>
            <first_frame> V  L  T  T  H  T  L  G  F  K  K  I  I  I  A  A  *  H  M  H  P  I  R  I  W  I  M  L  S  H  G  Q  L  I  Q  P  P  T  Y  I  S  I  G  P  L  F  I  K  D  G  I  F  I  V  F  F  H  G  K  L  L  *  *  *  G  F  *  C  Y  K  *  E  *  H  *  I  G  T  T  K  H  D  I  F  L  V  C  T  N  Q  D  Q  K  S  S  Q  L  I  T  Y  G  Y  L  L  T  *  T  F  P  Q  Y  I  R  L  I  *  L  *  T  Q  L  T  H  S  L  S  *  F  F  L  L  L  F  F  L  S  P  E  I  L  *  S  L  S  C  H  T  D  D  A  F  S  I  T  E  T  *  H  H  I  I  C  R  V  S  S  R  *  C  L  S  L  I  K  *  Q  *  *  S  Q  *  Q  R  R  W  L  D  C  *  I  V  V  G  V  K  V  D  R  F  *  W  </first_frame>
            <second_frame>  S  L  Q  P  I  H  *  D  S  R  K  S  *  L  L  P  N  T  C  T  Q  S  G  F  G  *  C  Y  H  M  V  S  S  Y  N  H  P  H  T  Y  L  *  D  H  S  S  S  K  M  V  S  S  L  C  F  S  M  E  N  Y  F  S  S  R  D  F  D  V  I  N  K  S  S  I  K  *  V  P  Q  S  M  T  Y  F  W  S  V  Q  I  R  T  K  S  L  V  N  *  S  H  M  D  I  S  L  H  K  L  F  L  N  I  *  D  *  Y  N  Y  E  P  S  L  L  T  L  C  P  S  F  F  F  F  F  F  F  F  L  Q  R  S  F  D  L  S  H  A  T  R  M  M  L  S  P  L  L  K  L  D  I  T  L  Y  A  E  C  L  V  D  D  A  C  P  *  S  S  D  N  D  N  L  S  D  N  D  D  G  S  I  V  E  L  W  L  A  L  R  S  I  D  F  D  G </second_frame>
            <third_frame>   P  Y  N  P  Y  T  R  I  Q  E  N  H  N  C  C  L  T  H  A  P  N  Q  D  L  D  N  V  I  T  W  S  A  H  T  T  T  H  I  H  I  Y  R  T  T  L  H  Q  R  W  Y  L  H  C  V  F  P  W  K  T  T  L  V  V  G  I  L  M  L  *  I  R  V  A  L  N  R  Y  H  K  A  *  H  I  S  G  L  Y  K  S  G  P  K  V  *  S  I  N  H  I  W  I  S  P  Y  I  N  F  S  S  I  Y  K  I  N  I  I  M  N  P  A  Y  S  L  F  V  L  V  F  S  S  S  F  F  S  F  S  R  D  P  L  I  S  L  M  P  H  G  *  C  F  L  H  Y  *  N  L  T  S  H  Y  M  P  S  V  *  *  M  M  L  V  P  D  Q  V  T  M  I  I  S  V  T  T  T  M  A  R  L  L  N  C  G  W  R  *  G  R  S  I  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101405" stop="101199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYNPYTRIQENHNCCLTHAPNQDLDNVITWSAHTTTHIHIYRTTLHQRWYLHCVFPWKTTLVVGILML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="105484" PGL_stop="105093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105484" e_stop="105093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="105484" e_stop="105093" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105484" stop="105093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105417" stop="105093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCAAAAGTCACAAGTGGTTCCGCACAATCAACTGGAAGAAACTTGATGCCAGAGAACTACAGCCTAAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</gDNA_template>
            <first_frame> D  Q  K  S  Q  V  V  P  H  N  Q  L  E  E  T  *  C  Q  R  T  T  A  *  V  Q  T  R  C  N  W  Q  R  L  H  S  Q  F  R  *  M  L  D  Y  D  A  T  G  *  L  T  S  I  Y  S  D  N  R  R  T  L  S  R  L  H  L  C  S  T  K  S  L  A  L  L  *  L  I  *  V  F  I  L  T  K  F  R  T  F  S  L  L  L  *  V  I  L  F  *  R  E  D  H  E  K  C  M  D  Q  I  V  S  *  *  K  Q  I  F  L  T  L  F  V  Y  Y  C  K  L  N  S  S   </first_frame>
            <second_frame>  I  K  S  H  K  W  F  R  T  I  N  W  K  K  L  D  A  R  E  L  Q  P  K  F  K  P  D  V  I  G  R  D  C  T  A  N  F  D  K  C  W  T  T  M  P  P  D  D  S  P  A  S  T  P  T  T  G  E  H  F  Q  G  Y  T  Y  V  A  P  N  P  W  L  S  S  S  *  F  K  S  L  S  *  Q  N  S  E  L  L  V  C  Y  C  K  S  F  F  F  R  E  R  I  M  R  S  V  W  I  R  L  Y  H  D  K  S  K  S  F  *  L  F  L  C  T  I  V  S  S  I  L  L  </second_frame>
            <third_frame>   S  K  V  T  S  G  S  A  Q  S  T  G  R  N  L  M  P  E  N  Y  S  L  S  S  N  Q  M  *  L  A  E  I  A  Q  P  I  S  I  N  V  G  L  R  C  H  R  M  T  H  Q  H  L  L  R  Q  Q  A  N  T  F  K  V  T  L  M  *  H  Q  I  L  G  S  P  L  V  D  L  S  L  Y  P  D  K  I  P  N  F  *  F  A  I  V  S  H  S  F  L  E  R  G  S  *  E  V  Y  G  S  D  C  I  M  I  K  A  N  L  S  N  S  F  C  V  L  L  *  A  Q  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105483" stop="105256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSHKWFRTINWKKLDARELQPKFKPDVIGRDCTANFDKCWTTMPPDDSPASTPTTGEHFQGYTYVAPNPWLSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="108290" PGL_stop="106011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108290" e_stop="108074"/>
            <exon e_start="106561" e_stop="106479"/>
            <exon e_start="106393" e_stop="106273"/>
            <exon e_start="106131" e_stop="106011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108290" e_stop="108074" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.866">
            <gDNA_intron_boundary i_start="108073" i_stop="106562" i_length="1512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106561" e_stop="106479" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.790">
            <gDNA_intron_boundary i_start="106478" i_stop="106394" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106393" e_stop="106273" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.975">
            <gDNA_intron_boundary i_start="106272" i_stop="106132" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="106131" e_stop="106011" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108290" stop="108074"/>
              <exon start="106561" stop="106479"/>
              <exon start="106393" stop="106273"/>
              <exon start="106131" stop="106011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108267" stop="108074"/>
              <exon start="106561" stop="106479"/>
              <exon start="106393" stop="106273"/>
              <exon start="106131" stop="106121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224449" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGAGGATGATTGGAAAAGGTTCTTTTGGGAAGGTTTTTCAGGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAG : ACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAG : TGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGACAT : GTCATGCTGACAGATTTTGGACTGGCAAAAGAGATTGATGAATCAAGCAGATCTAATTCAATGTGTGGAACCATGGAATACATGGCTCCGGAGATTATACAGTCCAAGGGCCACAATAAAG</gDNA_template>
            <first_frame> L  E  D  D  W  K  R  F  F  W  E  G  F  S  G  E  D  E  G  V  W  W  *  G  *  G  *  W  N  I  S  H  E  S  D  E  E  G  H  S  N  Q  E  *  P  C  G  L  Y  E  S  *  E  G  Y  S  H  Q  S  *  A  P  F  Y  C  A  A  *  I  L  I  S   : D  E  V  *  A  L  L  D  F  G  F  Y  K  W  R  T  S  F  L  S  F  I  Q  T  R  D  F  Q  :  *  G  P  G  K  D  L  C  C  *  D  S  F  C  C  F  T  S  S  P  E  R  D  R  A  S  R  P  Q  T  R  K  Y  S  H  G  W  *  W  T   : C  H  A  D  R  F  W  T  G  K  R  D  *  *  I  K  Q  I  *  F  N  V  W  N  H  G  I  H  G  S  G  D  Y  T  V  Q  G  P  Q  *   </first_frame>
            <second_frame>  L  R  M  I  G  K  G  S  F  G  K  V  F  Q  V  K  M  K  G  Y  G  G  E  G  E  G  D  G  I  L  A  M  K  V  M  R  K  D  T  V  I  K  N  N  H  V  D  Y  M  R  A  E  R  D  I  L  T  K  V  E  H  P  F  I  V  Q  L  R  Y  S  F  Q  :  T  K  S  K  L  Y  L  I  L  D  F  I  N  G  G  H  L  F  Y  H  L  Y  R  Q  G  I  F  S :   E  D  Q  A  R  I  Y  A  A  E  I  V  S  A  V  S  H  L  H  Q  R  G  I  V  H  R  D  L  K  P  E  N  I  L  M  D  G  D  G  H  :  V  M  L  T  D  F  G  L  A  K  E  I  D  E  S  S  R  S  N  S  M  C  G  T  M  E  Y  M  A  P  E  I  I  Q  S  K  G  H  N  K  </second_frame>
            <third_frame>   *  G  *  L  E  K  V  L  L  G  R  F  F  R  *  R  *  R  G  M  V  V  R  V  R  V  M  E  Y  *  P  *  K  *  *  G  R  T  Q  *  S  R  I  T  M  W  I  I  *  E  L  R  G  I  F  S  P  K  L  S  T  L  L  L  C  S  L  D  T  H  F  R :   R  S  L  S  F  T  *  F  W  I  L  *  M  E  D  I  F  S  I  I  Y  T  D  K  G  F  S   : V  R  T  R  Q  G  F  M  L  L  R  *  F  L  L  F  H  I  F  T  R  E  G  S  C  I  E  T  S  N  Q  K  I  F  S  W  M  V  M  D  M :   S  C  *  Q  I  L  D  W  Q  K  R  L  M  N  Q  A  D  L  I  Q  C  V  E  P  W  N  T  W  L  R  R  L  Y  S  P  R  A  T  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108289" stop="108074"/>
                    <exon start="106561" stop="106479"/>
                    <exon start="106393" stop="106273"/>
                    <exon start="106131" stop="106012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRMIGKGSFGKVFQVKMKGYGGEGEGDGILAMKVMRKDTVIKNNHVDYMRAERDILTKVEHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARIYAAEIVSAVSHLHQRGIVHRDLKPENILMDGDGHVMLTDFGLAKEIDESSRSNSMCGTMEYMAPEIIQSKGHNK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="109059" PGL_stop="108360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109059" e_stop="108360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="109059" e_stop="108360" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109059" stop="108464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109034" stop="108360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109034" stop="108593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108948" stop="108739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATACTTTCATTTGTCTCTCTCTTTCATGCATCTGTAATTTGCAAAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTCCTTCATCTTCTTCCAGTTTTCTAACTGACCCACAAATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACTCTCTCAAAACCTCTGCCTTTTCACCAAGAAGTTGATTCTGAGGGAGAAAGTGATAGTGATAAAGTTAATACTCATGTAGGTACTCACCAAACTGAATGTTCTGA</gDNA_template>
            <first_frame> S  I  L  S  F  V  S  L  F  H  A  S  V  I  C  K  I  P  C  T  H  Y  F  S  A  H  K  S  Q  L  P  S  S  F  S  S  S  P  I  P  N  T  L  *  S  C  N  L  S  L  S  *  F  L  L  F  H  *  L  V  P  A  D  P  *  C  S  P  C  S  F  T  A  C  S  E  F  N  L  S  W  L  S  L  A  *  I  T  F  L  I  H  K  N  N  N  S  K  D  A  I  F  D  I  F  A  D  Q  L  I  K  G  F  Q  E  F  L  L  I  W  P  L  Q  L  S  R  R  R  L  F  I  P  C  *  Q  T  S  *  P  I  S  K  S  L  T  L  L  H  H  H  L  L  L  L  L  I  Q  T  L  I  F  L  M  F  L  V  L  L  P  L  L  H  L  L  P  V  F  *  L  T  H  K  S  F  I  V  G  P  T  L  L  W  V  H  L  Q  G  S  L  S  Q  N  L  C  L  F  T  K  K  L  I  L  R  E  K  V  I  V  I  K  L  I  L  M  *  V  L  T  K  L  N  V  L  </first_frame>
            <second_frame>  P  Y  F  H  L  S  L  S  F  M  H  L  *  F  A  K  S  P  V  P  I  T  S  L  L  I  N  H  S  F  L  L  L  F  L  L  P  P  F  Q  T  P  F  K  V  A  T  F  H  F  L  D  F  F  F  S  I  N  *  S  L  Q  I  P  D  V  A  L  V  L  S  Q  P  A  L  S  S  I  S  A  G  F  L  L  P  K  S  H  S  *  F  T  K  I  T  I  V  K  M  Q  S  L  I  F  L  L  T  N  *  *  R  G  F  K  N  S  C  *  Y  G  L  C  S  S  A  E  E  G  Y  S  F  H  V  S  K  Q  A  D  P  S  Q  N  P  *  L  F  F  I  I  I  S  S  S  Y  *  S  R  L  *  F  F  *  C  F  W  C  S  Y  L  S  F  I  F  F  Q  F  S  N  *  P  T  N  H  S  *  *  V  P  L  F  C  G  S  I  S  K  D  H  S  L  K  T  S  A  F  S  P  R  S  *  F  *  G  R  K  *  *  *  *  S  *  Y  S  C  R  Y  S  P  N  *  M  F  * </second_frame>
            <third_frame>   H  T  F  I  C  L  S  L  S  C  I  C  N  L  Q  N  P  L  Y  P  L  L  L  C  S  *  I  T  A  S  F  F  F  F  F  F  P  H  S  K  H  P  L  K  L  Q  P  F  T  F  L  I  S  S  F  P  L  I  S  P  C  R  S  L  M  *  P  L  F  F  H  S  L  L  *  V  Q  S  Q  L  A  F  S  C  L  N  H  I  L  D  S  Q  K  *  Q  *  *  R  C  N  L  *  Y  F  C  *  P  I  D  K  G  V  S  R  I  L  V  N  M  A  F  A  A  Q  Q  K  K  A  I  H  S  M  L  A  N  K  L  T  H  L  K  I  P  D  S  S  S  S  S  S  P  P  P  T  D  P  D  F  D  F  S  D  V  F  G  A  P  T  S  P  S  S  S  S  S  F  L  T  D  P  Q  I  I  H  S  R  S  H  S  F  V  G  P  S  P  R  I  T  L  S  K  P  L  P  F  H  Q  E  V  D  S  E  G  E  S  D  S  D  K  V  N  T  H  V  G  T  H  Q  T  E  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108739" stop="108362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIDKGVSRILVNMAFAAQQKKAIHSMLANKLTHLKIPDSSSSSSPPPTDPDFDFSDVFGAPTSPSSSSSFLTDPQIIHSRSHSFVGPSPRITLSKPLPFHQEVDSEGESDSDKVNTHVGTHQTECS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="116722" PGL_stop="110616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116722" e_stop="116575"/>
            <exon e_start="115143" e_stop="115020"/>
            <exon e_start="114896" e_stop="114815"/>
            <exon e_start="114742" e_stop="114654"/>
            <exon e_start="114572" e_stop="114498"/>
            <exon e_start="114406" e_stop="114352"/>
            <exon e_start="113931" e_stop="113812"/>
            <exon e_start="113727" e_stop="113635"/>
            <exon e_start="113564" e_stop="113419"/>
            <exon e_start="111555" e_stop="111378"/>
            <exon e_start="111271" e_stop="110616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.830" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.377" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.199" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.156" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.911"/>
          <exon-intron don_prob="0.931" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116722" e_stop="116575" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.915">
            <gDNA_intron_boundary i_start="116574" i_stop="115144" i_length="1431"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115143" e_stop="115020" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115019" i_stop="114897" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114896" e_stop="114815" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.948">
            <gDNA_intron_boundary i_start="114814" i_stop="114743" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="114742" e_stop="114654" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114653" i_stop="114573" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114572" e_stop="114498" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.830" acc_prob="0.970">
            <gDNA_intron_boundary i_start="114497" i_stop="114407" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114406" e_stop="114352" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.377" acc_prob="0.994">
            <gDNA_intron_boundary i_start="114351" i_stop="113932" i_length="420"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113931" e_stop="113812" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.866" acc_prob="0.199">
            <gDNA_intron_boundary i_start="113811" i_stop="113728" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="113727" e_stop="113635" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.156">
            <gDNA_intron_boundary i_start="113634" i_stop="113565" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="113564" e_stop="113419" e_length="146"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="113418" i_stop="111556" i_length="1863"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="111555" e_stop="111378" e_length="178"/>
          </exon>
          <intron i_serial="10" don_prob="0.931" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111377" i_stop="111272" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="111271" e_stop="110616" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116722" stop="116575"/>
              <exon start="115143" stop="115020"/>
              <exon start="114896" stop="114815"/>
              <exon start="114742" stop="114654"/>
              <exon start="114572" stop="114498"/>
              <exon start="114406" stop="114352"/>
              <exon start="113931" stop="113812"/>
              <exon start="113727" stop="113635"/>
              <exon start="113564" stop="113469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113883" stop="113812"/>
              <exon start="113727" stop="113635"/>
              <exon start="113564" stop="113419"/>
              <exon start="111555" stop="111509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113514" stop="113419"/>
              <exon start="111555" stop="111378"/>
              <exon start="111271" stop="111157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113466" stop="113419"/>
              <exon start="111555" stop="111378"/>
              <exon start="111271" stop="110681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111475" stop="111378"/>
              <exon start="111271" stop="110616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111475" stop="111378"/>
              <exon start="111271" stop="110655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111474" stop="111378"/>
              <exon start="111271" stop="110864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATCGGAGCGTATTCAAAGTGGCTTGATGCTTCATCAAATGGATTTTCACATTTGCCCACACTCATTGATATTCTTGTGAGAGGCATGAGCACGTGTGAAGATTCCGCAGCTGCAGCTGCTTTAGCTTTCAGACACATATGCAATG : ATTGCAAGAAGAAGCTTTGTGGGTCACTAGATGGTCTGTTTCAAATTTACCAAACGGCAGTCATTGGGGAAGGTCCCTTCAAAGTTTCCGCGGAAGATTCGTTGCATCTGGTTGAAGCTTTAAG : TATGGTTATTACAGAGCTTCCTTCGGAACATGCTAAGAAGGCACTTGAGGCAGTATGCCTGCCATCTGTTGCTCAGTTACAA : GAGATGATCAATCAAGGTCCCCAAGTTTTGGGGCAAAAAAATGCTCGGGAATTAACTGTTCATTTTGATCGACTTGCAAATATATTTAG : ATATGTAAATCACCCAGAAGCGGTTGCAGATGCAATTCAAAAACTTTGGCCAATATTCAAAGCCATTTTTGATGT : TCGTGCTTGGGACATGCGGACGATGGAGTCTCTTTGCCGGGCTTGTAAAAATGCT : GTACGAACTTCTAAGAGGCTCATGGGGGTTACAATTGGGGCGATGCTGGAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAG : ATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAG : GATTTCACTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATACTGTCCTCAACTATTTTTTCCCTCTACTGTGTTTCCATCATTGGTGGATTGTGCCATGATCGGCATCACCGTGCAGCACAG : GGAGGCTTGCAATTCAATATTGAACTTTGTGTCTGATATATTCGATCTTTCGAACTCTACAAACGGGGAAAGTTGCCTATCCATAAGAGACAGTGTAATTATTCCTCGAGGGCCCACTATCACCAGAATTTTGGTTGCTTGTCTAACTGGAGCCCTTCCTAGTTCACGACTAGAAACA : GTAACTTACGCTCTACTGGCATTGACCCGGGCATATGGGTTGAAAGCTCTTGAGTGGGCAAAGGAATGTGTGTCCTTAATTCCATCAACAGCTGTTACAGAATTGGAAAGGACTAGGTTTTTACAAGCTTTGTCTGATGCAGCCTCTGGAGCAAATATGAACGGTCTGGTAGTTCCGATTGACGAGATTTCAGAGGTTTGCCGACGTAATCGAACTGTTCAGGAAATAGTTCAAGGAGCTTTGAGGCCACTTGATCTGAACATAGTAGCTGTATCATAGTGGAGAGGGTGCAGAAGGACCTTTTTTTAACCTCTCCCTTCTTTGCAGACAGTAGTTTTTCATGATTCTTTGGAGGCCTTATTTCATCGTTTGTCCATTGTGCGGCTTGGAAATATATACTAGTTATGCAGCAAAAGGGTGTTGTATTGTTGTTACTTTTTCTACTTGTGGGAAGTGATAGAGGAACTCAAAGCAGATGCAGTTCACTTGGTTTGGCTTTTTCACTTTTGGTCCTTTTTCGATTTGGGGGGGTTTTCTTTCGAAGGTGAGGAGTTTCCAGTTTTGAGGTTTAATCCTGGAGTTCAATGTATAAGCTTCTTGTATTTGGTAACATCTTCCAGTTTATAACTATGTATAGAATGTGCAGTTTCTTTCAG</gDNA_template>
            <first_frame> T  I  G  A  Y  S  K  W  L  D  A  S  S  N  G  F  S  H  L  P  T  L  I  D  I  L  V  R  G  M  S  T  C  E  D  S  A  A  A  A  A  L  A  F  R  H  I  C  N   : D  C  K  K  K  L  C  G  S  L  D  G  L  F  Q  I  Y  Q  T  A  V  I  G  E  G  P  F  K  V  S  A  E  D  S  L  H  L  V  E  A  L  S :   M  V  I  T  E  L  P  S  E  H  A  K  K  A  L  E  A  V  C  L  P  S  V  A  Q  L  Q  :  E  M  I  N  Q  G  P  Q  V  L  G  Q  K  N  A  R  E  L  T  V  H  F  D  R  L  A  N  I  F  R :   Y  V  N  H  P  E  A  V  A  D  A  I  Q  K  L  W  P  I  F  K  A  I  F  D  V :   R  A  W  D  M  R  T  M  E  S  L  C  R  A  C  K  N  A  :  V  R  T  S  K  R  L  M  G  V  T  I  G  A  M  L  E  E  I  Q  G  L  Y  G  Q  H  H  Q  P  C  F  L  Y  L  S  S  E  V  I  K  :  I  F  G  S  D  P  S  C  A  N  Y  L  K  V  L  I  E  S  L  F  S  H  T  A  C  L  L  T  K  I  Q  :  D  F  T  S  R  P  D  I  A  D  D  C  F  L  L  A  S  R  C  I  R  Y  C  P  Q  L  F  F  P  S  T  V  F  P  S  L  V  D  C  A  M  I  G  I  T  V  Q  H  R :   E  A  C  N  S  I  L  N  F  V  S  D  I  F  D  L  S  N  S  T  N  G  E  S  C  L  S  I  R  D  S  V  I  I  P  R  G  P  T  I  T  R  I  L  V  A  C  L  T  G  A  L  P  S  S  R  L  E  T  :  V  T  Y  A  L  L  A  L  T  R  A  Y  G  L  K  A  L  E  W  A  K  E  C  V  S  L  I  P  S  T  A  V  T  E  L  E  R  T  R  F  L  Q  A  L  S  D  A  A  S  G  A  N  M  N  G  L  V  V  P  I  D  E  I  S  E  V  C  R  R  N  R  T  V  Q  E  I  V  Q  G  A  L  R  P  L  D  L  N  I  V  A  V  S  *  W  R  G  C  R  R  T  F  F  *  P  L  P  S  L  Q  T  V  V  F  H  D  S  L  E  A  L  F  H  R  L  S  I  V  R  L  G  N  I  Y  *  L  C  S  K  R  V  L  Y  C  C  Y  F  F  Y  L  W  E  V  I  E  E  L  K  A  D  A  V  H  L  V  W  L  F  H  F  W  S  F  F  D  L  G  G  F  S  F  E  G  E  E  F  P  V  L  R  F  N  P  G  V  Q  C  I  S  F  L  Y  L  V  T  S  S  S  L  *  L  C  I  E  C  A  V  S  F   </first_frame>
            <second_frame>  Q  S  E  R  I  Q  S  G  L  M  L  H  Q  M  D  F  H  I  C  P  H  S  L  I  F  L  *  E  A  *  A  R  V  K  I  P  Q  L  Q  L  L  *  L  S  D  T  Y  A  M  :  I  A  R  R  S  F  V  G  H  *  M  V  C  F  K  F  T  K  R  Q  S  L  G  K  V  P  S  K  F  P  R  K  I  R  C  I  W  L  K  L  *   : V  W  L  L  Q  S  F  L  R  N  M  L  R  R  H  L  R  Q  Y  A  C  H  L  L  L  S  Y  K :   R  *  S  I  K  V  P  K  F  W  G  K  K  M  L  G  N  *  L  F  I  L  I  D  L  Q  I  Y  L   : D  M  *  I  T  Q  K  R  L  Q  M  Q  F  K  N  F  G  Q  Y  S  K  P  F  L  M   : F  V  L  G  T  C  G  R  W  S  L  F  A  G  L  V  K  M  L :   Y  E  L  L  R  G  S  W  G  L  Q  L  G  R  C  W  R  K  Y  K  D  Y  M  D  N  T  I  S  R  V  F  F  I  S  L  V  K  S  L  R :   Y  L  V  Q  I  H  P  V  Q  I  T  *  K  F  S  L  S  L  S  L  A  I  Q  H  V  F  L  Q  R  F  R :   I  S  L  P  V  R  I  *  Q  M  I  V  F  C  W  H  Q  D  V  S  D  T  V  L  N  Y  F  F  P  L  L  C  F  H  H  W  W  I  V  P  *  S  A  S  P  C  S  T   : G  R  L  A  I  Q  Y  *  T  L  C  L  I  Y  S  I  F  R  T  L  Q  T  G  K  V  A  Y  P  *  E  T  V  *  L  F  L  E  G  P  L  S  P  E  F  W  L  L  V  *  L  E  P  F  L  V  H  D  *  K  Q :   *  L  T  L  Y  W  H  *  P  G  H  M  G  *  K  L  L  S  G  Q  R  N  V  C  P  *  F  H  Q  Q  L  L  Q  N  W  K  G  L  G  F  Y  K  L  C  L  M  Q  P  L  E  Q  I  *  T  V  W  *  F  R  L  T  R  F  Q  R  F  A  D  V  I  E  L  F  R  K  *  F  K  E  L  *  G  H  L  I  *  T  *  *  L  Y  H  S  G  E  G  A  E  G  P  F  F  N  L  S  L  L  C  R  Q  *  F  F  M  I  L  W  R  P  Y  F  I  V  C  P  L  C  G  L  E  I  Y  T  S  Y  A  A  K  G  C  C  I  V  V  T  F  S  T  C  G  K  *  *  R  N  S  K  Q  M  Q  F  T  W  F  G  F  F  T  F  G  P  F  S  I  W  G  G  F  L  S  K  V  R  S  F  Q  F  *  G  L  I  L  E  F  N  V  *  A  S  C  I  W  *  H  L  P  V  Y  N  Y  V  *  N  V  Q  F  L  S  </second_frame>
            <third_frame>   N  R  S  V  F  K  V  A  *  C  F  I  K  W  I  F  T  F  A  H  T  H  *  Y  S  C  E  R  H  E  H  V  *  R  F  R  S  C  S  C  F  S  F  Q  T  H  M  Q  * :   L  Q  E  E  A  L  W  V  T  R  W  S  V  S  N  L  P  N  G  S  H  W  G  R  S  L  Q  S  F  R  G  R  F  V  A  S  G  *  S  F  K  :  Y  G  Y  Y  R  A  S  F  G  T  C  *  E  G  T  *  G  S  M  P  A  I  C  C  S  V  T   : R  D  D  Q  S  R  S  P  S  F  G  A  K  K  C  S  G  I  N  C  S  F  *  S  T  C  K  Y  I  *  :  I  C  K  S  P  R  S  G  C  R  C  N  S  K  T  L  A  N  I  Q  S  H  F  *  C  :  S  C  L  G  H  A  D  D  G  V  S  L  P  G  L  *  K  C   : C  T  N  F  *  E  A  H  G  G  Y  N  W  G  D  A  G  G  N  T  R  T  I  W  T  T  P  S  A  V  F  S  L  S  L  *  *  S  H  *   : D  I  W  F  R  S  I  L  C  K  L  L  E  S  S  H  *  V  S  L  *  P  Y  S  M  S  S  Y  K  D  S   : G  F  H  F  P  S  G  Y  S  R  *  L  F  F  A  G  I  K  M  Y  P  I  L  S  S  T  I  F  S  L  Y  C  V  S  I  I  G  G  L  C  H  D  R  H  H  R  A  A  Q  :  G  G  L  Q  F  N  I  E  L  C  V  *  Y  I  R  S  F  E  L  Y  K  R  G  K  L  P  I  H  K  R  Q  C  N  Y  S  S  R  A  H  Y  H  Q  N  F  G  C  L  S  N  W  S  P  S  *  F  T  T  R  N   : S  N  L  R  S  T  G  I  D  P  G  I  W  V  E  S  S  *  V  G  K  G  M  C  V  L  N  S  I  N  S  C  Y  R  I  G  K  D  *  V  F  T  S  F  V  *  C  S  L  W  S  K  Y  E  R  S  G  S  S  D  *  R  D  F  R  G  L  P  T  *  S  N  C  S  G  N  S  S  R  S  F  E  A  T  *  S  E  H  S  S  C  I  I  V  E  R  V  Q  K  D  L  F  L  T  S  P  F  F  A  D  S  S  F  S  *  F  F  G  G  L  I  S  S  F  V  H  C  A  A  W  K  Y  I  L  V  M  Q  Q  K  G  V  V  L  L  L  L  F  L  L  V  G  S  D  R  G  T  Q  S  R  C  S  S  L  G  L  A  F  S  L  L  V  L  F  R  F  G  G  V  F  F  R  R  *  G  V  S  S  F  E  V  *  S  W  S  S  M  Y  K  L  L  V  F  G  N  I  F  Q  F  I  T  M  Y  R  M  C  S  F  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116722" stop="116575"/>
                    <exon start="115143" stop="115020"/>
                    <exon start="114896" stop="114815"/>
                    <exon start="114742" stop="114654"/>
                    <exon start="114572" stop="114498"/>
                    <exon start="114406" stop="114352"/>
                    <exon start="113931" stop="113812"/>
                    <exon start="113727" stop="113635"/>
                    <exon start="113564" stop="113419"/>
                    <exon start="111555" stop="111378"/>
                    <exon start="111271" stop="110993"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIGAYSKWLDASSNGFSHLPTLIDILVRGMSTCEDSAAAAALAFRHICNDCKKKLCGSLDGLFQIYQTAVIGEGPFKVSAEDSLHLVEALSMVITELPSEHAKKALEAVCLPSVAQLQEMINQGPQVLGQKNARELTVHFDRLANIFRYVNHPEAVADAIQKLWPIFKAIFDVRAWDMRTMESLCRACKNAVRTSKRLMGVTIGAMLEEIQGLYGQHHQPCFLYLSSEVIKIFGSDPSCANYLKVLIESLFSHTACLLTKIQDFTSRPDIADDCFLLASRCIRYCPQLFFPSTVFPSLVDCAMIGITVQHREACNSILNFVSDIFDLSNSTNGESCLSIRDSVIIPRGPTITRILVACLTGALPSSRLETVTYALLALTRAYGLKALEWAKECVSLIPSTAVTELERTRFLQALSDAASGANMNGLVVPIDEISEVCRRNRTVQEIVQGALRPLDLNIVAVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153G23.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110869" stop="110645"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCSKRVLYCCYFFYLWEVIEELKADAVHLVWLFHFWSFFDLGGFSFEGEEFPVLRFNPGVQCISFLYLVTSSSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 314 chains have been computed
$ 
$ memory statistics:
$ 382840 bytes spliced alignments in total
$ 181 spliced alignments have been stored
$ 2115 bytes was the average size of a spliced alignment
$ 33784 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1608 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 340 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:37:43
-->
