<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:47:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361935" ref_strand="+" ref_description="SGN-E361935 [cLPP-11-K3]">
      <seq>tcatcattttttccccctcatttgcatgtaaaactccatatcccccaagaaatacacaaaataggcattaccttaacaatatcctctcctaattaggcagggctaagctcctttattaagaagatcattcaaatattgactagaggaagactttcacttggtggggaaggtgttaaaggaaaaaaaaaacatcaaaaaaaagatttctttttcttattaattaagtaactgctatattactgtaatcaataagttttttttttttttgaaaaaaaaaatataaagaggggagtttatattttgtttaaagcagcagaggaaggaagaatataggaaaatccttaatggacaatctttttggtcttttaagaatcaaaattaagagaggtataaacctcgctgtacgtgatgtccgcagcagtgatccctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23186" stop="24724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23477" g_stop="23611" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23612" i_stop="24124" i_length="513">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24125" g_stop="24424" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="432" r_length="298" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E361935" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23477" e_stop="23611"/>
          <exon e_start="24125" e_stop="24424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCATTTTCCCCCTCATTTGCATGTAAAACTCCATATCCCCCAAGAAATACACAAAATAGGCATTACCTTAACAATATCCTCTCCTAATTAGGCAGGGCTAAGCTCCTTTATTAAGAAGATCATTCAAATGTAAGTATCAATTATCAACTTTAATTTATAAATGAAAATATAATTTTTTTTTCTTCCATATTCTTCAAATGATTGAAATTAAATTTCTATTCTTTTTCTCTACATTTTGTCAAAACTTTTTCTTACGATTGGAATTAGATCTAAGTCAATTTCAATAACAAATTGGATTGGCTTCTTTCTTTTACGTGATTTGTCAATCCTGATAAACAGTGGCGAAATAAAAAAATTTAATGATCAAATTCAAAAGAGTTTTAAAATGTCACACATGGAATTCTTTTATAATTTTTTAAATTTATGCAATATATATTTTAAATCCCCCTTACTTTGTATTTGCGTGTTAAATTCAAAATCCAAAAATATAAAAGAATCTAAATTTCAAATCATAAATTTTAAATTCTAACGGAGACTCAACTGATATATCTATAAAATCCTTCAATTCATACTCCTAAAATACCTAAATTGTGACTATTTTTTTTCTTTCTAATATATATACTTGTTTTCCCATTTTTTCAGATTGACTAGAGGAAGACTTTCACTTGGCGGGGAAGGTGTT-AAGGAAAAAAAAAACATAAAAAAAAAATAAATTCTTTTTCTTATTAATTAAGTAACTGCTCTATTACTGTAATCAATAAGTTTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCCGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCTTATG</genome_strand>
        <mrna_strand>TCATCAT-TTTTTCCCCCTCATTTGCATGTAAAACTCCATATCCCCCAAGAAATACACAAAATAGGCATTACCTTAACAATATCCTCTCCTAATTAGGCAGGGCTAAGCTCCTTTATTAAGAAGATCATTCAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTAGAGGAAGACTTTCACTTGGTGGGGAAGGTGTTAAAGGAAAAAAAAAACAT-CAAAAAAAA-GATTTCTTTTTCTTATTAATTAAGTAACTGCTATATTACTGTAATCAATAAG-TTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCAGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362461" ref_strand="+" ref_description="SGN-E362461 [cLPP-1-B9]">
      <seq>gagaactagtctcgagttttttttttttttttttgaaaaaaaaaatataaagaggggagtttatattttgtttaaagcagcagaggaaggaagaatataggaaaatccttaatggacaatctttttggtcttttaagaatcaaaattaagagaggtataaacctcgctgtacgtgatgtccgcagcagtgatccctatgttgttgtcaaaatgggtaaccagaaactgaagacgcgagttataaagaaggatgttaatcctgaatggaatgaacatcttaccctttctgtatcagatgcaaatcttcctgttaagctgactgtatacgatcacgatatgttcagcatggatgacaaaatgggagatgcagaatttgatatcaaaccatttttagatgctttgaaaatgaagttagattctctcccaagtggcacagtgatcacaagagaaacgccgtgcaggacaaactgtctgtctgaagagagcaaagtgacatggcaagacaaccaagttgtgcaagatatgtgcttgagattgagaaatgtcgagtgtggagaggtcgaacttcaacttcagtggatcaatattcctggaagcaaacgtttatagagtttatctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23945" stop="25910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24226" g_stop="24447" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24448" i_stop="25119" i_length="672">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25120" g_stop="25215" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="318" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25216" i_stop="25305" i_length="90">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25306" g_stop="25610" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="622" r_length="304" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E362461" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24226" e_stop="24447"/>
          <exon e_start="25120" e_stop="25215"/>
          <exon e_start="25306" e_stop="25610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTGTAATCAATAAGTTTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCCGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCTTATGTTGTTGTCAAAATGGGTAATCAGGTACGAAAAAATTATATTATTTATATATGATTAATTTTTTATTTATTTATTACTTTAAAATTTAAATCTCTTATTAAAATTTTGAGTCCGTTACTGGCTCATTCCCAATTAGTTTGGGATTGATTGTCTTAATGTTTGCTTGCATTTGGTTGTTTCCAAGATTGAATTTTGTTTCCCCTTTTGTCCTATTTTTTAAATCTCAATATGTGTATTTTTTGTATTTCTTGGGATGTTGGGTTGGCTTAGTTTCTTCTGGATATGATTGTTGAATTCTGTAGTGTTTACATATTTCTATCCACCAATAGGGTGTGTTAGGTATGAAAGGAAACTGTTTTCTTGAAAATCGTTATTCATAACACGTTCCTACTCATTTTCTTGCGTACCTAATGAGGTGTACTGTTGGAGGGTGGGGCGGACACAATCAATGTGGTTTATCATTTAAGTAGAGCTTGTTTTCCCTCATTTCTGAGGAACTTGTTTTCCTGGAGAACATATTTTTCTAGATATTTGACCCAATCGAACATGGAAAAATTGAAAAAATAGAACACGTCCTAATTAGTTTTTGAAATGCTAAGCTTTACTTTTTACTCTAGGCTCTTGATAATGTATCTTGAGATTAAATTGCAATTTTTTTCTCCTGTTCTGTATAGTCTTTATTGATCACTTGTGCAGAAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTGGTAAAGTTCATTAGTTGCTGATACAATCCTTTACCTACGCGCGTGCAAATGTATTGTCCTGATTATGCATTCATGTTTGTTTGCTTTTAGACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACCAAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTC</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCAGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCCTATGTTGTTGTCAAAATGGGTAACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAACATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTTAAGCTG..........................................................................................ACTGTATACGATCACGATATGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAAGTTAGATTCTCTCCCAAGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACCAAGTTGTGCAAGATATGTGCTTGAGATTGAGAAATGTCGAGTGTGGAGAGGTCGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAG-TTTATCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341929" ref_strand="+" ref_description="SGN-E341929 [cTOF-9-L5]">
      <seq>tccgcagcagtgatccttatgttgttgtcaaaatgggtaatcagaaactgaagacgcgagttataaagaaggatgttaatcctgaatggaatgaatatcttaccctttctgtatcagatgcaaatcttcctgtgaagctgactgtatacgatcacgataggttcagcatggatgacaaaatgggagatgcagaatttgatatcaaaccatttttagatgctttgaaaatgaatttagattctctcccatgtggcacagtgatcacaagagaaacgccgtgcaggacaaactgtctgtctgaagagagcaaagtgacatggcaagacaaccaaagttgtgcaagatttgtgcctcagattgagaaatgtggagtgtggagaggtagaacttcaacttcagtggatcaatattcctggaagcaaacgtttatagagatttatctcttctgttgtttattctaacctgatttgcccctatatataggccagaattgataaatatgcctttgtcaacacaaggtctgcactctgcagcttagtaaaatctgatttcaaacattctatatatatatactctgtttgctgaatatggagctacagatgatatataccttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24104" stop="26087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24404" g_stop="24447" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24448" i_stop="25119" i_length="672">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25120" g_stop="25215" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="140" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25216" i_stop="25305" i_length="90">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25306" g_stop="25787" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="623" r_length="483" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E341929" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24404" e_stop="24447"/>
          <exon e_start="25120" e_stop="25215"/>
          <exon e_start="25306" e_stop="25787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCAGCAGTGATCCTTATGTTGTTGTCAAAATGGGTAATCAGGTACGAAAAAATTATATTATTTATATATGATTAATTTTTTATTTATTTATTACTTTAAAATTTAAATCTCTTATTAAAATTTTGAGTCCGTTACTGGCTCATTCCCAATTAGTTTGGGATTGATTGTCTTAATGTTTGCTTGCATTTGGTTGTTTCCAAGATTGAATTTTGTTTCCCCTTTTGTCCTATTTTTTAAATCTCAATATGTGTATTTTTTGTATTTCTTGGGATGTTGGGTTGGCTTAGTTTCTTCTGGATATGATTGTTGAATTCTGTAGTGTTTACATATTTCTATCCACCAATAGGGTGTGTTAGGTATGAAAGGAAACTGTTTTCTTGAAAATCGTTATTCATAACACGTTCCTACTCATTTTCTTGCGTACCTAATGAGGTGTACTGTTGGAGGGTGGGGCGGACACAATCAATGTGGTTTATCATTTAAGTAGAGCTTGTTTTCCCTCATTTCTGAGGAACTTGTTTTCCTGGAGAACATATTTTTCTAGATATTTGACCCAATCGAACATGGAAAAATTGAAAAAATAGAACACGTCCTAATTAGTTTTTGAAATGCTAAGCTTTACTTTTTACTCTAGGCTCTTGATAATGTATCTTGAGATTAAATTGCAATTTTTTTCTCCTGTTCTGTATAGTCTTTATTGATCACTTGTGCAGAAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTGGTAAAGTTCATTAGTTGCTGATACAATCCTTTACCTACGCGCGTGCAAATGTATTGTCCTGATTATGCATTCATGTTTGTTTGCTTTTAGACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACC-AAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTCTGTTGTTTATTCTAACCTGATTTGCCCCTATATATAGGCCAGAATTGATAAATATGCCTTTGTACAACACAAGGTCTGCACTCTGCAGCTTAGTAAAATCTGATTTCAAACATTCTATATATATATACTCTGTTTGCTGAATATGGAGCTACAGATGATATATA-CTTCTTATACAAA</genome_strand>
        <mrna_strand>TCCGCAGCAGTGATCCTTATGTTGTTGTCAAAATGGGTAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTG..........................................................................................ACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACCAAAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTCTGTTGTTTATTCTAACCTGATTTGCCCCTATATATAGGCCAGAATTGATAAATATGCCTTTGT-CAACACAAGGTCTGCACTCTGCAGCTTAGTAAAATCTGATTTCAAACATTCTATATATATATACTCTGTTTGCTGAATATGGAGCTACAGATGATATATACCTTCTTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31325" stop="32573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31625" g_stop="32273" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31625" e_stop="32273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGAAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCATCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTGAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31326" stop="32310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31626" g_stop="32010" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31626" e_stop="32010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGAAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31984" stop="33391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32284" g_stop="33091" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32284" e_stop="33091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCAAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCTAGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAAATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332752" ref_strand="+" ref_description="SGN-E332752 [cTOD-18-K20]">
      <seq>ttgatgcagcagagaggtagaattagtaattgtaaatcaaggtccttttctagatctcgtcttgctgttgaaggttcttaacctcttcagcttctatcatggctgccattgctccagaggtaggagaagagcgtgagattcaaaagagttattggatggagcaaactagtgaactcaatttggaggcaatgatgcgtgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccttcatatgaaggtaaatccgtgttggaattgggtgctggtattggccgtttcactggggacttagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgactaagaagaatgaaagtatcaacgggcaccacaagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacggttttacctgaatcagtggacttgatattttctaactggctactgatgtatctttccaacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacccactatcgagagcctcgattttatacaaaggttttccaagaatgtacttttaaggatgatgctggaaaatcatatgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34150" stop="36910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34450" g_stop="34566" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34864" g_stop="34985" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="239" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="377" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35468" g_stop="35605" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="515" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36248" g_stop="36391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="659" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36559" g_stop="36610" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="711" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E332752" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34450" e_stop="34566"/>
          <exon e_start="34864" e_stop="34985"/>
          <exon e_start="35164" e_stop="35301"/>
          <exon e_start="35468" e_stop="35605"/>
          <exon e_start="36248" e_stop="36391"/>
          <exon e_start="36559" e_stop="36610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCGCTCTTTTCAACGTGATATCAGAACAAGCAAATGTCTCTATCACCAGAGTATCCGTATCGGGTTCATCTGAACTAATACTTTTGACGTGGAACATAAACAAGTTCAATGCTGAGAAATTTTAAAATTGAATTCATAACACTTAACAAAAGATATATTTCTCTGTAATTGTAGCAAAGTTAATGTGTCATCTATTTAATTATTATGTTTTTTTAGATGAGAGGAGTGCACTAAACAGTTTTAACATTTTGTTTGAATTGGACATTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTGATTATAGGAACCGGTGAATGAGTTGGTTCTATCTATGATTCACTTGTTGTTGCTTTATTTTTAGATAATATGGTGACAAATCAAGTGAATAGGCTTTTATATACTTGCTTATCGATTTGTTTGCTTCGTTGCAGAATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTT</genome_strand>
        <mrna_strand>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG......................................................................................................................................................................AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTACTTTTAAGGATGATGCTGGAAAATCATATGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300914" ref_strand="+" ref_description="SGN-E300914 [cLEW-8-P14]">
      <seq>ttgatgcagcagagaggtagaattagtcattgtaaatcaaggtccttttctagatctcgtcttgctgttgaaggttcttaacctcttcagcttctatcatggctgccattgctccagaggtaggagaagagcgtgagattcaaaagagttattggatggagcaaactagtgaactcaatttggaggcaatgatgcgtgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccttcatatgaaggtaaatccgtgttggaattgggtgctggtattggccgtttcactggggacttagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgactaagaagaatgaaagtatcaacgggcaccacaagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacggttttacctgaatcattggactttgatattttctaactggctactgatgtatctttccaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34150" stop="35901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34450" g_stop="34566" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34864" g_stop="34985" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="239" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="377" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35468" g_stop="35601" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="512" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E300914" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34450" e_stop="34566"/>
          <exon e_start="34864" e_stop="34985"/>
          <exon e_start="35164" e_stop="35301"/>
          <exon e_start="35468" e_stop="35601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCGCTCTTTTCAACGTGATATCAGAACAAGCAAATGTCTCTATCACCAGAGTATCCGTATCGGGTTCATCTGAACTAATACTTTTGACGTGGAACATAAACAAGTTCAATGCTGAGAAATTTTAAAATTGAATTCATAACACTTAACAAAAGATATATTTCTCTGTAATTGTAGCAAAGTTAATGTGTCATCTATTTAATTATTATGTTTTTTTAGATGAGAGGAGTGCACTAAACAGTTTTAACATTTTGTTTGAATTGGACATTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTGATTATAGGAACCGGTGAATGAGTTGGTTCTATCTATGATTCACTTGTTGTTGCTTTATTTTTAGATAATATGGTGACAAATCAAGTGAATAGGCTTTTATATACTTGCTTATCGATTTGTTTGCTTCGTTGCAGAATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGAC-TTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGA</genome_strand>
        <mrna_strand>TTGATGCAGCAGAGAGGTAGAATTAGTCATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG......................................................................................................................................................................AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCATTGGACTTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746613" ref_strand="+" ref_description="SGN-E746613 [GI|47104137]">
      <seq>ggcagcagagaggtagaattagtaattgtaaatcaaggtccttttctagatctcgtcttgctgttgaaggttcttaacctcttcagcttctatcatggctgccattgctccagaggtaggagaagagcgtgagattcaaaagagttattggatggagcaaactagtgaactcaatttggaggcaatgatgcgtgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccttcatatgaaggtaaatccgtgttggaattgggtgctggtattggccgtttcactggggacttagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgactaagaagaatgaaagtatcaacgggcaccacaagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacggttttacctgaatcagtggacttgatattttctaactggctactgatgtatctttccaacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacccactatcgagagcctcgattttatacaaaggttttccaagaatgtactttaaaggatgatgctggaaaatcatatgaactttctcttattggttataagtgcattgaaacttatgtaaaaaacaaaaagaatcaaaatgagatttgctggatatggcagaaggttcattccgaggatgacaggggattccagcatttcttggacactgttcagtacaagtctaatggtatactgagatatgaacgtgtgttcggggcaggctttgtcagcacaggaggaattgacaccaccaaagaattcgttgccatgatggatcttcagcctggcgaaaaggtccttgacgttggctgtggcattggaggaggtgactcttacatggctgagaagtatgatgttcatgttgtaggcatttatctttcagttaacatgatcacattggcttttgaacgtgctattgggcgcaaatgcgcggttgaatttgaggttgctgattgcacggtgaaaacatatcctgaagaatcattcgatgtgatatacagccgggacactatcctgcacatccaggacaagcctgcattattcagatctttctataagtggctgaagcctggaggcagagtcctcataagcgattactgcaaaaaggcaggaccagcttccgaagactttgcagcgtatatcaaacaaagaggctacgatttacatgatgttgaagcatatggacagatgcttagagatgctggtttcaacgaagttattgctgatgatcgaactgagcagttcatgcaagttctccagaaagagttggatactgtggagaatgaaagagagttatttatccaagaattttctgaacaagactacaatgatatagttggaggttggaaggccaagctagttagaagttcatctggtgagcagagatggggtttgttctttgccaagaaaaattgatgtgtgttattgtgtactgttgtttcattgaagataataaaaatgatttaagtttgatgttgtaatgattcgaggctctaccctatgtagaccccatttataggattacactggctatgttgtttattttaatgattcctactctgtcggtttaatgtaatatgtgagttggttaagatcatgttattaataaaagtttgtcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34155" stop="38758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34454" g_stop="34566" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34864" g_stop="34985" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="235" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="373" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35468" g_stop="35605" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="511" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36248" g_stop="36391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="655" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36559" g_stop="36669" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="766" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36759" g_stop="36900" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="908" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37101" g_stop="37381" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="909" r_stop="1189" r_length="281" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.045" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="37515" g_stop="37676" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1351" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="37677" i_stop="37759" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="37760" g_stop="37813" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1352" r_stop="1405" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="37814" i_stop="37991" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37992" g_stop="38066" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1406" r_stop="1480" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="38067" i_stop="38150" i_length="84">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="38151" g_stop="38457" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1481" r_stop="1787" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1788" polyA_stop="1801"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E746613" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1787</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34454" e_stop="34566"/>
          <exon e_start="34864" e_stop="34985"/>
          <exon e_start="35164" e_stop="35301"/>
          <exon e_start="35468" e_stop="35605"/>
          <exon e_start="36248" e_stop="36391"/>
          <exon e_start="36559" e_stop="36669"/>
          <exon e_start="36759" e_stop="36900"/>
          <exon e_start="37101" e_stop="37381"/>
          <exon e_start="37515" e_stop="37676"/>
          <exon e_start="37760" e_stop="37813"/>
          <exon e_start="37992" e_stop="38066"/>
          <exon e_start="38151" e_stop="38457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCGCTCTTTTCAACGTGATATCAGAACAAGCAAATGTCTCTATCACCAGAGTATCCGTATCGGGTTCATCTGAACTAATACTTTTGACGTGGAACATAAACAAGTTCAATGCTGAGAAATTTTAAAATTGAATTCATAACACTTAACAAAAGATATATTTCTCTGTAATTGTAGCAAAGTTAATGTGTCATCTATTTAATTATTATGTTTTTTTAGATGAGAGGAGTGCACTAAACAGTTTTAACATTTTGTTTGAATTGGACATTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTGATTATAGGAACCGGTGAATGAGTTGGTTCTATCTATGATTCACTTGTTGTTGCTTTATTTTTAGATAATATGGTGACAAATCAAGTGAATAGGCTTTTATATACTTGCTTATCGATTTGTTTGCTTCGTTGCAGAATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTGGTATGCCTCTTGGATTATCACTTTATGCAATAAACTATAGGATCTTTAGTTTGCTTCTTTGGATTATCACTGTGGTTAGGGCTTGTACACATGGTTCTTCAAACATTTCTGTTTACGAGTTCTGTTCCTTCTTTCCAAAAACAATAATTTAGTGCAGAAGTAAACTGATATTTGGTTTTTCTGTATTTGTTCTTGAACAGACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAGGTAATTAGCAGTCTCTCATTTCATTTTCTTGGTTGTGCTGCACCTGCTCTAAAGTCATATGTTTGACCTTCAACATTACATTGTCACAATTGTTCCTCGTCCTAACGGTTGAATAATTATCGAGTGTTTGCAGGACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAGGTAAACATTTACCCCATACAATGAATGTGTACCCAATCCTCTTTCTTTGCATGACAATGCTACTTTATAATTTCACATCATAGATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGATCGAACTGAGCAGGTATGTTTTTCTTTCTTTGTTTTGGATTTAAGTTATACACACTGACAGTATAAAACACTATCAGCATGTAGTCAGCTTAGTTATCTTTTTTACATCACATTTCAACTTAAAACTCGTATTCTTTCGCTTGGAAGAGAGTGATGATATGCACCTAAAATGTCTATTACTTTCCTTGCAGTTCATGCAAGTTCTCCAGAAAGAGTTGGATACTGTGGAGAATGAAAGAGAGTTATTTATCCAAGAATTTTCTGAAGTGAGTGCATTGTCATATAAGTATAATTGAAATGTCTAATGATTGATTTTATCTTATTTTGCTTCTATTTTTGTGTATACACAGCAAGACTACAATGATATAGTTGGAGGTTGGAAGGCCAAGCTAGTTAGAAGTTCATCTGGTGAGCAGAGATGGGGTTTGTTCTTTGCCAAGAAAAATTGATGTGTGTTATTGTGTACTGTTGTTTCATTGAAGATAATAAAAATGATTTAAGTTTGATGTTGTAATGATTCGAGGCTCTACCCTATGTAGACCCCATTTATAGGATTACACTGGCTATGTTGTTTATTTTAATGATTCCTACTCTGTCGGTTTAATGTAATATGTGAGTTGGTTAAGATCATGTTATTAATAAAAGTTTGTCATAAAG</genome_strand>
        <mrna_strand>GGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG......................................................................................................................................................................AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG.........................................................................................ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG........................................................................................................................................................................................................ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTCTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTTATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG.....................................................................................................................................GACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAG...................................................................................ATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGATCGAACTGAGCAG..................................................................................................................................................................................TTCATGCAAGTTCTCCAGAAAGAGTTGGATACTGTGGAGAATGAAAGAGAGTTATTTATCCAAGAATTTTCTGAA....................................................................................CAAGACTACAATGATATAGTTGGAGGTTGGAAGGCCAAGCTAGTTAGAAGTTCATCTGGTGAGCAGAGATGGGGTTTGTTCTTTGCCAAGAAAAATTGATGTGTGTTATTGTGTACTGTTGTTTCATTGAAGATAATAAAAATGATTTAAGTTTGATGTTGTAATGATTCGAGGCTCTACCCTATGTAGACCCCATTTATAGGATTACACTGGCTATGTTGTTTATTTTAATGATTCCTACTCTGTCGGTTTAATGTAATATGTGAGTTGGTTAAGATCATGTTATTAATAAAAGTTTGTCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438938" ref_strand="+" ref_description="SGN-E438938 [cSTA-10-E14]">
      <seq>cagcagagaggtagaattagtaattgtaaatcaaggtccttttctagatctcgtcttgctgttgaaggtttttaacctcttcagctgcttccatttcaaccttctatcatggctgccattgctccaggggtaggaaaagagcgtgagattcaaaagagttattggatggagcaaactactgaactcaatttggaggcaatgatgcttgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccctcatatgaagggaaatccgtgttggaattgggtgctggtattggtcgtttcacaggggacatagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgattaagaagaatgaaagcatcaacgggaaccacaagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacgtttttacctgaatctgtggacttgatattttctaactggctactgatgtatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34156" stop="35894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34456" g_stop="34582" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34583" i_stop="34863" i_length="281">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34864" g_stop="34985" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="249" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="387" r_length="138" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35468" g_stop="35594" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="514" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E438938" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34456" e_stop="34582"/>
          <exon e_start="34864" e_stop="34985"/>
          <exon e_start="35164" e_stop="35301"/>
          <exon e_start="35468" e_stop="35594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCGCTCTTTTCAACGTGATATCAGAACAAGCAAATGTCTCTATCACCAGAGTATCCGTATCGGGTTCATCTGAACTAATACTTTTGACGTGGAACATAAACAAGTTCAATGCTGAGAAATTTTAAAATTGAATTCATAACACTTAACAAAAGATATATTTCTCTGTAATTGTAGCAAAGTTAATGTGTCATCTATTTAATTATTATGTTTTTTTAGATGAGAGGAGTGCACTAAACAGTTTTAACATTTTGTTTGAATTGGACATTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTGATTATAGGAACCGGTGAATGAGTTGGTTCTATCTATGATTCACTTGTTGTTGCTTTATTTTTAGATAATATGGTGACAAATCAAGTGAATAGGCTTTTATATACTTGCTTATCGATTTGTTTGCTTCGTTGCAGAATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTT</genome_strand>
        <mrna_strand>CAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTTTTAACCTCTTCAGCTGCTTCCATTTCAACCTTCTATCATGGCTGCCATTGCTCCAG.........................................................................................................................................................................................................................................................................................GGGTAGGAAAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTACTGAACTCAATTTGGAGGCAATGATGCTTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCCTCATATGAAGGGAAATCCGTGTTGGAATTGGGTGCTGGTATTGGTCGTTTCACAGGGGACATAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGATTAAGAAG......................................................................................................................................................................AATGAAAGCATCAACGGGAACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGTTTTTACCTGAATCTGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279160" ref_strand="-" ref_description="SGN-E279160 [cLEL-4-N21](-)">
      <seq>gcacgagagagaggtagaattagtaattgtaaatcaaggtccttttctagatctcgtcttgctgttgaaggttcttaacctcttcagcttctatcatggctgccattgctccagaggtaggagaagagcgtgagattcaaaagagttattggatggagcaaactagtgaactcaatttggaggcaatgatgcgtgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccttcatatgaaggtaaatccgtgttggaattgggtgctggtattggccgtttcactggggacttagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgactaagaaaggttttgtggctttttttactttggggcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34150" stop="35633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34459" g_stop="34566" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="114" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34864" g_stop="34985" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="236" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35333" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="407" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E279160" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279160" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34459" e_stop="34566"/>
          <exon e_start="34864" e_stop="34985"/>
          <exon e_start="35164" e_stop="35333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCGCTCTTTTCAACGTGATATCAGAACAAGCAAATGTCTCTATCACCAGAGTATCCGTATCGGGTTCATCTGAACTAATACTTTTGACGTGGAACATAAACAAGTTCAATGCTGAGAAATTTTAAAATTGAATTCATAACACTTAACAAAAGATATATTTCTCTGTAATTGTAGCAAAGTTAATGTGTCATCTATTTAATTATTATGTTTTTTTAGATGAGAGGAGTGCACTAAACAGTTTTAACATTTTGTTTGAATTGGACATTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAG-AAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTG</genome_strand>
        <mrna_strand>GAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314750" ref_strand="+" ref_description="SGN-E314750 [cTOA-20-I6]">
      <seq>ttttaatgtgttgtgtgtagaggtaggagaagagcgtgagattcaaaagagttattggatggagcaaactagtgaactcaatttggaggcaatgatgcgtgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccttcatatgaaggtaaatccgtgttggaattgggtgctggtattggccgtttcactggggacttagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgactaagaagaatgaaagtatcaacgggcaccacaagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacggttttacctgaatcagtggacttgatattttctaactggctactgatgtatctttccaacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34544" stop="36629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34844" g_stop="34985" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35164" g_stop="35301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="280" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35468" g_stop="35605" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="418" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36248" g_stop="36329" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="500" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E314750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34844" e_stop="34985"/>
          <exon e_start="35164" e_stop="35301"/>
          <exon e_start="35468" e_stop="35605"/>
          <exon e_start="36248" e_stop="36329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTGATTATAGGAACCGGTGAATGAGTTGGTTCTATCTATGATTCACTTGTTGTTGCTTTATTTTTAGATAATATGGTGACAAATCAAGTGAATAGGCTTTTATATACTTGCTTATCGATTTGTTTGCTTCGTTGCAGAATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAAT</genome_strand>
        <mrna_strand>TTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG......................................................................................................................................................................AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419746" ref_strand="+" ref_description="SGN-E419746 [STM-30-K11]">
      <seq>caagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacgtttttacctgaatctgtggacttgatattttctaactggctactgatgtatctttccgacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacacactatcgagagcctagattttatacaaaggttttccaagaatgtaatttaaaggatgatgctggaaaattatatgaactttctcttattggttataagtgcattgaaacatatgtaagaaacaaaaagaatcaaaatgagatttgctggatatggcagaaggttcgttccgaggatgacaggggattccagcatttcttggacactgttcagtacaagtctaatggtatactgagatatgaacgtgtcttcggggcaggctttgtcagcacaggaggaattgacaccaccaaagaattcgttgccatgatggatcttcagcctggcgaaaaagtccttgatgttggctgtggcatcggtggaggtgacctttacatggctgagaagtatgatgttcatgttgtcggcattgatctttcagttaacatgatcacattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35191" stop="37557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35491" g_stop="35605" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36248" g_stop="36391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="259" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36559" g_stop="36669" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="370" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36759" g_stop="36900" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="512" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37101" g_stop="37257" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="669" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E419746" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35491" e_stop="35605"/>
          <exon e_start="36248" e_stop="36391"/>
          <exon e_start="36559" e_stop="36669"/>
          <exon e_start="36759" e_stop="36900"/>
          <exon e_start="37101" e_stop="37257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTGGTATGCCTCTTGGATTATCACTTTATGCAATAAACTATAGGATCTTTAGTTTGCTTCTTTGGATTATCACTGTGGTTAGGGCTTGTACACATGGTTCTTCAAACATTTCTGTTTACGAGTTCTGTTCCTTCTTTCCAAAAACAATAATTTAGTGCAGAAGTAAACTGATATTTGGTTTTTCTGTATTTGTTCTTGAACAGACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGC</genome_strand>
        <mrna_strand>CAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGTTTTTACCTGAATCTGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCGACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACACACTATCGAGAGCCTAGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTAATTTAAAGGATGATGCTGGAAAATTATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACATATGTAAGAAACAAAAAGAATCAAAATGAG.........................................................................................ATTTGCTGGATATGGCAGAAGGTTCGTTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTCTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG........................................................................................................................................................................................................ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAAGTCCTTGATGTTGGCTGTGGCATCGGTGGAGGTGACCTTTACATGGCTGAGAAGTATGATGTTCATGTTGTCGGCATTGATCTTTCAGTTAACATGATCACATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444699" ref_strand="+" ref_description="SGN-E444699 [cSTA-43-J12]">
      <seq>caagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacgtttttacctgaatctgtggacttgatattttctaactggctactgatgtatctttccgacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacacactatcgagagcctagattttatacaaaggttttccaagaatgtaatttaaaggatgatgctggaaaattatatgaactttctcttattggttataagtgcattgaaacatatgtaagaaacaaaaagaatcaaaatgagatttgctggatatggcagaaggttcgttccgaggatgacaggggattccagcatttcttggacactgttcagtacaagtctaatggtatactgagatatgaacgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35191" stop="37167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35491" g_stop="35605" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36248" g_stop="36391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="259" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36559" g_stop="36669" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="370" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36759" g_stop="36867" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="479" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E444699" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35491" e_stop="35605"/>
          <exon e_start="36248" e_stop="36391"/>
          <exon e_start="36559" e_stop="36669"/>
          <exon e_start="36759" e_stop="36867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGT</genome_strand>
        <mrna_strand>CAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGTTTTTACCTGAATCTGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCGACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACACACTATCGAGAGCCTAGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTAATTTAAAGGATGATGCTGGAAAATTATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACATATGTAAGAAACAAAAAGAATCAAAATGAG.........................................................................................ATTTGCTGGATATGGCAGAAGGTTCGTTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301106" ref_strand="+" ref_description="SGN-E301106 [cLEW-22-P22]">
      <seq>ttcaccagatttgacggttttacctgaatcagtggacttgatattttctaactggctactgatgtatctttccaacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacccactatcgagagcctcgattttatacaaaggttttccaagaatgtactttaaaggatgatgctggaaaatcatatgaactttctcttattggttataagtgcattgaaacttatgtaaaaaacaaagaggctacgatttacatgatgttgaagcatatggacagatgcttagagatgctggtttcaacgaagttattgctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35224" stop="38101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35524" g_stop="35605" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36248" g_stop="36391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="226" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36559" g_stop="36651" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="319" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36652" i_stop="37635" i_length="984">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37636" g_stop="37676" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="360" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37677" i_stop="37759" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37760" g_stop="37801" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="402" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E301106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35524" e_stop="35605"/>
          <exon e_start="36248" e_stop="36391"/>
          <exon e_start="36559" e_stop="36651"/>
          <exon e_start="37636" e_stop="37676"/>
          <exon e_start="37760" e_stop="37801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTGGTATGCCTCTTGGATTATCACTTTATGCAATAAACTATAGGATCTTTAGTTTGCTTCTTTGGATTATCACTGTGGTTAGGGCTTGTACACATGGTTCTTCAAACATTTCTGTTTACGAGTTCTGTTCCTTCTTTCCAAAAACAATAATTTAGTGCAGAAGTAAACTGATATTTGGTTTTTCTGTATTTGTTCTTGAACAGACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAGGTAATTAGCAGTCTCTCATTTCATTTTCTTGGTTGTGCTGCACCTGCTCTAAAGTCATATGTTTGACCTTCAACATTACATTGTCACAATTGTTCCTCGTCCTAACGGTTGAATAATTATCGAGTGTTTGCAGGACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAGGTAAACATTTACCCCATACAATGAATGTGTACCCAATCCTCTTTCTTTGCATGACAATGCTACTTTATAATTTCACATCATAGATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGAT</genome_strand>
        <mrna_strand>TTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAG...................................................................................ATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320798" ref_strand="+" ref_description="SGN-E320798 [cTOB-27-G4]">
      <seq>aatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacccactatcgagagcctcgattttatacaaaggttttccaagaatgtactttaaaggatgatgctggaaaatcatatgaactttctcttattggttataagtgcattgaaacttatgtaaaaaacaaaaagaatcaaaatgagatttgctggatatggcagaaggttcattccgaggatgacaggggattccagcatttcttggacactgttcagtacaagtctaatggtatactgagatatgaacgtgtgttcggggcaggctttgtcagcacaggaggaattgacaccaccaaagaattcgttgccatgatggatcttcagcctggcgaaaagtccttgacgttggctgtggcattggaggaggtgacttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35976" stop="37493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36276" g_stop="36391" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36559" g_stop="36669" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="227" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36759" g_stop="36900" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="369" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37101" g_stop="37193" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="461" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E320798" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36276" e_stop="36391"/>
          <exon e_start="36559" e_stop="36669"/>
          <exon e_start="36759" e_stop="36900"/>
          <exon e_start="37101" e_stop="37193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTGGTATGCCTCTTGGATTATCACTTTATGCAATAAACTATAGGATCTTTAGTTTGCTTCTTTGGATTATCACTGTGGTTAGGGCTTGTACACATGGTTCTTCAAACATTTCTGTTTACGAGTTCTGTTCCTTCTTTCCAAAAACAATAATTTAGTGCAGAAGTAAACTGATATTTGGTTTTTCTGTATTTGTTCTTGAACAGACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACA</genome_strand>
        <mrna_strand>AATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG.........................................................................................ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG........................................................................................................................................................................................................ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAA-GTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324072" ref_strand="+" ref_description="SGN-E324072 [cTOC-3-E14]">
      <seq>cattgaaacttatgtaaaaaacaaaaagaatcaaaatgagatttgctggatatggcagaaggttcattccgaggatgacaggggattccagcatttcttggacactgttcagtacaagtctaatggtatactgagatatgaacgtgtgttcggggcaggctttgtcagcacaggaggaattgacaccaccaaagaattcgttgccatgatggatcttcagcctggcgaaaaggtccttgacgttggctgtggcattggaggaggtgacttttacatggctgagaagtatgatgttcatgttgtaggcattgatctttcagttaacatgatcacattggcttttgaacgtgctattgggcgcaaatgcgcggttgaatttgaggttgctgattgcacggtgaaaacatatcctgaagaatcattcgatgtgatatacagccgggacactatcctgcacatccaggacaagcctgcattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36330" stop="37832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36630" g_stop="36669" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36759" g_stop="36900" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="182" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37101" g_stop="37381" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="463" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.045" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37515" g_stop="37532" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="481" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E324072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36630" e_stop="36669"/>
          <exon e_start="36759" e_stop="36900"/>
          <exon e_start="37101" e_stop="37381"/>
          <exon e_start="37515" e_stop="37532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTGGTATGCCTCTTGGATTATCACTTTATGCAATAAACTATAGGATCTTTAGTTTGCTTCTTTGGATTATCACTGTGGTTAGGGCTTGTACACATGGTTCTTCAAACATTTCTGTTTACGAGTTCTGTTCCTTCTTTCCAAAAACAATAATTTAGTGCAGAAGTAAACTGATATTTGGTTTTTCTGTATTTGTTCTTGAACAGACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAGGTAATTAGCAGTCTCTCATTTCATTTTCTTGGTTGTGCTGCACCTGCTCTAAAGTCATATGTTTGACCTTCAACATTACATTGTCACAATTGTTCCTCGTCCTAACGGTTGAATAATTATCGAGTGTTTGCAGGACAAGCCTGCATTATTC</genome_strand>
        <mrna_strand>CATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG.........................................................................................ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG........................................................................................................................................................................................................ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG.....................................................................................................................................GACAAGCCTGCATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545581" ref_strand="+" ref_description="SGN-E545581 [TUS-68-I2]">
      <seq>cacaatcggaaaaaatggctaccgaaggtcccaagccctgcgtttaccttcaagacatggaagaagtgaaaaaagtattcgcacgcttcgacgcgaatggcgacggcatgatctccggcgacgaactttccggcgtactgaaagccctaggatccgacacttcgccggaagaagttgcacgtatgatggccgaaattgataccgataaggacggttgcattaacctagatgaatttgcagatttttgcaaaaacgacgaatccgtcgacggcggcgctaaggaactgaaggaagcgtttgatctttacgatcaggatcataacggaaggatttctgctacggaacttcatcagatcctgaaccgcttgggccagaattgtacccttcaggattgtaccagaatgatcacgtccgttgatgcaaacggtgacggttacgtttgctttgaagagtttaagaagatgatgggtaataaataaatcattttatcgtaagttttacagttatttgagtggctgataacggtggggtacaccggatatttgtgcgtcctcctgtagtgtataactttgtggtctaataaatagcaagaccttagctttccatcgccttttattttgtacgtagatctcgttcattttaatttatgtgataatttttatttgtgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40909" stop="42180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41209" g_stop="41880" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E545581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41209" e_stop="41880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATCGTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTTGTACGTAGATCTCGTTCATTTTAATTTATGTGATAATTTTTATTTGTGTTAAT</genome_strand>
        <mrna_strand>CACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATCGTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTTGTACGTAGATCTCGTTCATTTTAATTTATGTGATAATTTTTATTTGTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310902" ref_strand="+" ref_description="SGN-E310902 [cLEZ-17-O19]">
      <seq>acaatcggaaaaaatggctaccgaaggtcccaagccctgcgtttaccttcaagacatggaagaagtgaaaaaagtattcgcacgcttcgacgcgaatggcgacggcatgatctccggcgacgaactttccggcgtactgaaagccctaggatccgacacttcgccggaagaagttgcacgtatgatggccgaaattgataccgataaggacggttgcattaacctagatgaatttgcagatttttgcaaaaacgacgaatccgtcgacggcggcgctaaggaactgaaggaagcgtttgatctttacgatcaggatcataacggaaggatttctgctacggaacttcatcagatcctgaaccgcttgggccagaattgtacccttcaggattgtaccagaatgatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40910" stop="41918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41210" g_stop="41618" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E310902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41210" e_stop="41618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACG</genome_strand>
        <mrna_strand>ACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612594" ref_strand="-" ref_description="SGN-E612594 [62358]">
      <seq>cttcgccggaggaagttgcacgtatgatggccgaaatcgataccgacaaggacggttgcattaacatagatgaatttgcaaatttttgcaaaaacgacgattccgtcgacggcggcgctaaggaactgaaggaggcgtttgatctttacgatcaggatcataacggaaggatttctgcgacggagcttcatcagatcctgaaccgtttgggccagaattgtacaattcaggattgtaccagaatgatcacgtccgttgatgccaacggtgacggttacgtttgctttgaagagtttaagaagatgatgggtaataaataaaccattttctctttgttgtaactttttcagttatttgagcggctgataactgtgaggtacaccggatattcgtgggtcctgctgtagtgtataactttgtggtctaataaatagcaagaccttagctttcgatcggctttattccgcatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41068" stop="42136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41368" g_stop="41827" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="481"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E612594" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612594" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41368" e_stop="41827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATC------GTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTT</genome_strand>
        <mrna_strand>CTTCGCCGGAGGAAGTTGCACGTATGATGGCCGAAATCGATACCGACAAGGACGGTTGCATTAACATAGATGAATTTGCAAATTTTTGCAAAAACGACGATTCCGTCGACGGCGGCGCTAAGGAACTGAAGGAGGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCGACGGAGCTTCATCAGATCCTGAACCGTTTGGGCCAGAATTGTACAATTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCCAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAACCATTTTCTCTTTGTTGTAACTTTTTCAGTTATTTGAGCGGCTGATAACTGTGAGGTACACCGGATATTCGTGGGTCCTGCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCGATCGGC-TTTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725852" ref_strand="+" ref_description="SGN-E725852 [LA08CA10]">
      <seq>ggacagttatcgactcccatttcttgggcctaaccgccattgttacagtggtttaccaattaatcttttttataatcacagcactcctcaaatttgataaagtcacagatttcgcaggaggtacaaatttcattgtgcttgcagtattaactttgatactaaaaggttcatggaattttcgacaggtggttttgtctgtgtttgtcgtgatatggggccttcgactggggctatttctattaatgaggatattacaatggggcgaggatagacgttttgatgataagcgtgataatctggggaaactggcaatattttggctatttcaggcaatctgggtgtggactgtgagtttaccagtgacagttgttaatgcaagtgaccaccaaccatctgttcagacggtagacatcattggttggattatgtggtctatcggaatatcagttgagatcgcttctgaccaacaaaagttaacattcaaaaactccccagagaacagaggaaagtggtgcaatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49050" stop="47007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48750" g_stop="48704" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48628" g_stop="48559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="117" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48151" g_stop="48084" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="185" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47868" g_stop="47807" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="247" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47690" g_stop="47609" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="329" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47608" i_stop="47501" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47500" g_stop="47307" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="523" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E725852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48750" e_stop="48704"/>
          <exon e_start="48628" e_stop="48559"/>
          <exon e_start="48151" e_stop="48084"/>
          <exon e_start="47868" e_stop="47807"/>
          <exon e_start="47690" e_stop="47609"/>
          <exon e_start="47500" e_stop="47307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACAGTAAGTAAAAATAGCTCTCTTTTTTTTTGTTATTATTTCTTTCTCATAATTCACAAACAAAAATAATTGTTGCAGGTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAGGTAAATTATTTGCCTTCACTTCTTGTCAAATTTGAATTCCCAAATAAGGTTTATTACATATTTAGTAAATTTCTGGGTTTTCACCTGTTAGTAATTGTGTATAAGTAAAAGAAATAATATATTTAATTTGAACAAAAAATGTCCAGTTGAAATACTTCATTGGGAGTTTAGTTGTTCGACTAAAATGTCTAGTTGAAATACTTCATTAGGAGTTGAGATGTTCGACTAAAACATGATCACTGGCGTATACAGACAAGTTTAAGTGGTTGATTATGTATGAAGCCTTTTTACATAGCCAGTTATATTATATTCGTGGTTCAAAAATGGTACTGCTAAAAAAGCAGCCAAATCACGAACCAATCTATTACTAATACTGCTGTGTGTCATTTTTTTTCATCTGCATACAGGAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAGGTAAGTGAATTTTACCTTCAACTAGCACTTCCATGCTTCACTTTGAGAATTGCTTGTTCTAAATGAGTCAGTTTTTTTATAAGTTTTGATGCACATGTTGGTGGCATTTTGTGCATATTTGGATCAAGAATGAGCTTAATTACATAATAAAACGTGCCCATAAAGTTTATAGCTGAGTTAGAGAGGCGGCTCAAATAGTTTGAAGTCTCTTTCAGGTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAGGTAAAAACACCAATCTATTATATGTCATATGTTTAGCTTGAGAAAGGGACTATTGCCCATTTCATATTAGAACCTTGTTATAGCCTCTTAAGATTATACTTTTTTGTTCTATTCAGGATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAGGTTCATTTTCCTTTTCCAAACCATAAGATATACCACATTATCTTGCATCTGATCGCGGGCTAATGCTTACAGCAGGATGAGATTTTTATAGTTTAATTTATATTACAGGCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAACAAAAGTTAACATTCAAAAACTCCCCAGAGAACAGAGGAAAGTGGTGCAATGTTGG</genome_strand>
        <mrna_strand>GGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA...........................................................................GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAG.......................................................................................................................................................................................................................GTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAG....................................................................................................................GATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAG............................................................................................................GCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAACAAAAGTTAACATTCAAAAACTCCCCAGAGAACAGAGGAAAGTGGTGCAATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323081" ref_strand="+" ref_description="SGN-E323081 [cTOB-28-I8]">
      <seq>ttatcgactcccatttcttgggcctaaccgccattgttacagtggtttaccaattaatcttttttataatcacagcactcctcaaatttgataaagtcacagatttcgcaggaggtacaaatttcattgtgcttgcagtattaactttgatactaaaaggttcatggaattttcgacaggtggttttgtctgtgtttgtcgtgatatggggccttcgactggggctatttctattaatgaggatattacaatggggcgaggatagacgttttgatgataagcgtgataatctggggaaactggcaatattttggctatttcaggcaatctgggtgtggactgtgagtttaccagtgacagttgttaatgcaagtgaccaccaaccatctgttcagacggtagacatcattggttggattatgtggtctatcggaatatcagttgagatcgcttctgaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49044" stop="47064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48744" g_stop="48704" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48628" g_stop="48559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="111" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48151" g_stop="48084" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="179" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47868" g_stop="47807" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47690" g_stop="47609" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="323" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47608" i_stop="47501" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47500" g_stop="47363" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="461" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E323081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48744" e_stop="48704"/>
          <exon e_start="48628" e_stop="48559"/>
          <exon e_start="48151" e_stop="48084"/>
          <exon e_start="47868" e_stop="47807"/>
          <exon e_start="47690" e_stop="47609"/>
          <exon e_start="47500" e_stop="47363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACAGTAAGTAAAAATAGCTCTCTTTTTTTTTGTTATTATTTCTTTCTCATAATTCACAAACAAAAATAATTGTTGCAGGTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAGGTAAATTATTTGCCTTCACTTCTTGTCAAATTTGAATTCCCAAATAAGGTTTATTACATATTTAGTAAATTTCTGGGTTTTCACCTGTTAGTAATTGTGTATAAGTAAAAGAAATAATATATTTAATTTGAACAAAAAATGTCCAGTTGAAATACTTCATTGGGAGTTTAGTTGTTCGACTAAAATGTCTAGTTGAAATACTTCATTAGGAGTTGAGATGTTCGACTAAAACATGATCACTGGCGTATACAGACAAGTTTAAGTGGTTGATTATGTATGAAGCCTTTTTACATAGCCAGTTATATTATATTCGTGGTTCAAAAATGGTACTGCTAAAAAAGCAGCCAAATCACGAACCAATCTATTACTAATACTGCTGTGTGTCATTTTTTTTCATCTGCATACAGGAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAGGTAAGTGAATTTTACCTTCAACTAGCACTTCCATGCTTCACTTTGAGAATTGCTTGTTCTAAATGAGTCAGTTTTTTTATAAGTTTTGATGCACATGTTGGTGGCATTTTGTGCATATTTGGATCAAGAATGAGCTTAATTACATAATAAAACGTGCCCATAAAGTTTATAGCTGAGTTAGAGAGGCGGCTCAAATAGTTTGAAGTCTCTTTCAGGTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAGGTAAAAACACCAATCTATTATATGTCATATGTTTAGCTTGAGAAAGGGACTATTGCCCATTTCATATTAGAACCTTGTTATAGCCTCTTAAGATTATACTTTTTTGTTCTATTCAGGATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAGGTTCATTTTCCTTTTCCAAACCATAAGATATACCACATTATCTTGCATCTGATCGCGGGCTAATGCTTACAGCAGGATGAGATTTTTATAGTTTAATTTATATTACAGGCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAA</genome_strand>
        <mrna_strand>TTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA...........................................................................GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAG.......................................................................................................................................................................................................................GTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAG....................................................................................................................GATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAG............................................................................................................GCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568935" ref_strand="+" ref_description="SGN-E568935 [13295]">
      <seq>cgaatggggacagtaatcgactcccatttcttgggcctaaccgccattgttacagtggtttaccaattaatcttttttataatcacagcactcctcaaatttgataaagtcacagacttcgcaggaggtacaaatttcattgtgcttgcattattaactttgatactaaagggttcatggaattttcgacaggtggttttgtctgtgtttgttgtgatatggggccttcgactggggatatttctattaatgaggatattacaatggggtgaggatagacgttttgatgataaagcgtgataatctggggaaacttggcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49056" stop="47323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48757" g_stop="48704" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48628" g_stop="48559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="124" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48151" g_stop="48084" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="192" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47868" g_stop="47807" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="254" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47690" g_stop="47630" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="317" r_length="63" r_score="0.918"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47629" i_stop="47501" i_length="129">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.906" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47500" g_stop="47494" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="324" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E568935" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48757" e_stop="48704"/>
          <exon e_start="48628" e_stop="48559"/>
          <exon e_start="48151" e_stop="48084"/>
          <exon e_start="47868" e_stop="47807"/>
          <exon e_start="47690" e_stop="47630"/>
          <exon e_start="47500" e_stop="47494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGGGGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACAGTAAGTAAAAATAGCTCTCTTTTTTTTTGTTATTATTTCTTTCTCATAATTCACAAACAAAAATAATTGTTGCAGGTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAGGTAAATTATTTGCCTTCACTTCTTGTCAAATTTGAATTCCCAAATAAGGTTTATTACATATTTAGTAAATTTCTGGGTTTTCACCTGTTAGTAATTGTGTATAAGTAAAAGAAATAATATATTTAATTTGAACAAAAAATGTCCAGTTGAAATACTTCATTGGGAGTTTAGTTGTTCGACTAAAATGTCTAGTTGAAATACTTCATTAGGAGTTGAGATGTTCGACTAAAACATGATCACTGGCGTATACAGACAAGTTTAAGTGGTTGATTATGTATGAAGCCTTTTTACATAGCCAGTTATATTATATTCGTGGTTCAAAAATGGTACTGCTAAAAAAGCAGCCAAATCACGAACCAATCTATTACTAATACTGCTGTGTGTCATTTTTTTTCATCTGCATACAGGAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAGGTAAGTGAATTTTACCTTCAACTAGCACTTCCATGCTTCACTTTGAGAATTGCTTGTTCTAAATGAGTCAGTTTTTTTATAAGTTTTGATGCACATGTTGGTGGCATTTTGTGCATATTTGGATCAAGAATGAGCTTAATTACATAATAAAACGTGCCCATAAAGTTTATAGCTGAGTTAGAGAGGCGGCTCAAATAGTTTGAAGTCTCTTTCAGGTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAGGTAAAAACACCAATCTATTATATGTCATATGTTTAGCTTGAGAAAGGGACTATTGCCCATTTCATATTAGAACCTTGTTATAGCCTCTTAAGATTATACTTTTTTGTTCTATTCAGGATATTACAATGGGGCGAGGATAGACGTTTTGATGAT-AAGCGTGATAATCTGGGGAAAC-TGGCAATATTTTGGCTATTTCAGGTTCATTTTCCTTTTCCAAACCATAAGATATACCACATTATCTTGCATCTGATCGCGGGCTAATGCTTACAGCAGGATGAGATTTTTATAGTTTAATTTATATTACAGGCAATCT</genome_strand>
        <mrna_strand>CGAATGGGGACAGTAATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA...........................................................................GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGACTTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTACAAATTTCATTGTGCTTGCATTATTAACTTTGATACTAAAGGGTTCATGGAATTTTCGACAG.......................................................................................................................................................................................................................GTGGTTTTGTCTGTGTTTGTTGTGATATGGGGCCTTCGACTGGGGATATTTCTATTAATGAG....................................................................................................................GATATTACAATGGGGTGAGGATAGACGTTTTGATGATAAAGCGTGATAATCTGGGGAAACTTG.................................................................................................................................GCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389499" ref_strand="+" ref_description="SGN-E389499 [TUS-4-D16](-)">
      <seq>ggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaaattgtgtatctgccttcccttgtgtattcatattgattccctcttttgtaattaaaaaaaaagaagaaagaattgctttaaaggagctcaagctcctcttttatctatgttttaggtcaacatttatattttgtacctattttattgaaacatgtgcaaatatagctcttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50582" stop="48828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="55" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="232" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49613" g_stop="49128" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="718" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E389499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAGA</genome_strand>
        <mrna_strand>GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550104" ref_strand="+" ref_description="SGN-E550104 [TUS-5-D28](-)">
      <seq>aaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaaattgtgtatctgccttcccttgtgtattcatattgattccctcttttgtaattaaaaaaaaagaagaaagaattgctttaaaggagctgaagctcctcttttatctatgttttaggtcaacatttatattttgtacctattttatggaaacatgtgcaaatatagctcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50351" stop="48829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50235" g_stop="50232" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="181" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49613" g_stop="49129" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="666" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E550104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50235" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAG</genome_strand>
        <mrna_strand>AAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTGAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATGGAAACATGTGCAAATATAGCTCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695865" ref_strand="+" ref_description="SGN-E695865 [LH_Ea07K07](-)">
      <seq>ccaatgatagttcatcgagatttgaagtctccaaatctcctagtagataagaactgggttgtgaaggtatgtgattttggactgtcaagaatgaagcacagcacatttctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgagaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccgatgcaagtcgttggtgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcccatgcaccaaaaccaccggttgccagaggccagccatcgcgaatcttagaagatgcatctgctgagcagggttaatactgaagaacgtaaatagacgtatttttcgttggatttaaacaggtccaaatttgagctcaagaagcagaaagaagacatcagagaacctgacaatcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaattgtgtatctgccttcccttgtgtattcatattgattccctcttttgtaattaaaaaaagaaagaattgcttgaaagaagggcaagctcctcttttatctatgtttaggtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51739" stop="48880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51439" g_stop="51374" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="135" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="185" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="362" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49613" g_stop="49187" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="782" r_length="420" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="795"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E695865" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51439" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAG</genome_strand>
        <mrna_strand>CCAATGATAGTTCATCGAGATTTGAAGTCTCCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAGAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCGATGCAAGTCGTTGGTGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCCCATGCACCAAAACCACCGGTTGCCAGAGGCCAGCCATCGCGAATCTTAGAAGATGCATCTGCTGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGGATTTAAACAGGTCCAAATTTGAGCTCAAGAAGCAGAAAGAAGACATCAGAGAACCTGACAATCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTC-AAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATT----AAAAA-AAGAAAGAATTGCTTGAAAGAAGGGCAAGCTCCTCTTTTATCTATG-TTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550085" ref_strand="+" ref_description="SGN-E550085 [TUS-5-B27]">
      <seq>gtgaagaaggtatgtgattttggactgtcaagaatgaagcacagctcatctctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaaattgtgtatctgccttcccttgtgtattcatattgattccctcttttgtaatcaaaaaaaaagaagaaagattgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51582" stop="48922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51382" g_stop="51374" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="78" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="128" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="305" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49613" g_stop="49222" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="696" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E550085" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51382" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTA</genome_strand>
        <mrna_strand>GTGAAGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCTCATCTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATCAAAAAAAAAGAAGAAAG-ATTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550454" ref_strand="+" ref_description="SGN-E550454 [TUS-5-D28]">
      <seq>gttgtgaaggtatgtgattttggactgtcaagaatgaagcacagcacatttctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtncctcaaaattgtgtatctgccttcccttgtgtattcatattgattccctcttttgtaattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51582" stop="48946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51382" g_stop="51374" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="78" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="128" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="305" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49613" g_stop="49246" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="673" r_length="368" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E550454" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51382" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAA</genome_strand>
        <mrna_strand>GTTGTGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTNCCTCAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389761" ref_strand="+" ref_description="SGN-E389761 [TUS-4-D16]">
      <seq>gttgtgaaggtatgtgattttggactgtcaagaatgaagcacagcacatttctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaaattgtgtatctgccttcccttgtgtattcatattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51582" stop="48965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51382" g_stop="51374" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="78" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="128" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="305" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49613" g_stop="49265" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="654" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E389761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51382" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGAT</genome_strand>
        <mrna_strand>GTTGTGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235565" ref_strand="+" ref_description="SGN-E235565 [cLED-11-F24]">
      <seq>ttgtgaaggtatgtgattttggactgtcaagaatgaagcacagcacatttctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaaattgtgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51582" stop="48991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51381" g_stop="51374" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="77" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="127" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="304" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49613" g_stop="49291" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="627" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E235565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51381" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCT</genome_strand>
        <mrna_strand>TTGTGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610181" ref_strand="+" ref_description="SGN-E610181 [57337]">
      <seq>gcacatttctttcttctaggtcgactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatttagcttcggtgtcatactatgggagctttgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggtgctgtggggtttcagcaccgccgtcttgacataccagatgacatggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttgctgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggtcagccatccgcggagcagggttagtactgaagaacgtaaatagacttatttctcgttgcgattaacacagatccaaatctgagctcaagaaactgcaggaagacatcaaagaacctgacaaatcagatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51546" stop="49068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51246" g_stop="51212" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="85" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="262" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49613" g_stop="49368" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="488" r_length="226" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E610181" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51246" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTG-AATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACA</genome_strand>
        <mrna_strand>GCACATTTCTTTCTTCTAGGTCGACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATTTAGCTTCGGTGTCATACTATGGGAGCTTTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGTGCTGTGGGGTTTCAGCACCGCCGTCTTGACATACCAGATGACATGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTGCTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCC--A-G------A--G-G--TC-----AG--CCATCCGCGGAGCAGGGTTAGTACTGAAGAACGTAAATAGACTTATTTCTCGTTGCGATTAACACAGATCCAAATCTGAGCTCAAGAAACTGCAGGAAGACATCAAAGAACCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315622" ref_strand="+" ref_description="SGN-E315622 [cTOA-22-H5]">
      <seq>agagagtgaggtgcggatcatgaaaaggctcagacatccaaatgttgttctgttcatgggagctgttactcgttctccacatctttcaattgttactgagtttcttcatagaggaagtttgtacagattaatccatcgacccaacaatcagttagatgagcgcagaaggttgaggatggctcttgatgctgctcgaggaatgaactatttacacaactgcactccaatgatagttcatcgagatttgaagtcaccaaatctcctagtagataagaactgggttgtgaaggtatgtgattttggactgtcaagaatgaagcacagcacatttctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacgcggatccagctattgcagacattatcatgatatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52215" stop="49269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51913" g_stop="51813" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="111" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51812" i_stop="51648" i_length="165">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51647" g_stop="51569" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="190" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51568" i_stop="51473" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51472" g_stop="51374" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="289" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="358" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="408" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="585" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49613" g_stop="49569" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="630" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E315622" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51913" e_stop="51813"/>
          <exon e_start="51647" e_stop="51569"/>
          <exon e_start="51472" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGGATCATGAAAAGGCTCAGACATCCAAATGTTGTTCTGTTCATGGGAGCTGTTACTCGTTCTCCACATCTTTCAATTGTTACTGAGTTTCTTCATAGGTATGTTAAAAGCTATGGGCAGAATTTTATGGATAATATAAAATACATTTCACTTTTATGGTCATCACATCAGTTAATTTGAAGTGGCTGTTGTTGGTTAACTTGGAAATCTGAACTAAAACTTGGTAACAATTTCTTGAATTCAAAATATATTTTGATTTGCAGAGGAAGTTTGTACAGATTAATCCATCGACCCAACAATCAGTTAGATGAGCGCAGAAGGTTGAGGATGGCTCTTGATGCTGTATGTTCGACTTTTTCATTTATAACTTCTCCATATGTTCAATCCTTTTGTATTAGTTTGTGACTTACTGGTGAATGTGCTTTACTAACTTAACAGGCTCGAGGAATGAACTATTTACACAACTGCACTCCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCT</genome_strand>
        <mrna_strand>GTGCGGATCATGAAAAGGCTCAGACATCCAAATGTTGTTCTGTTCATGGGAGCTGTTACTCGTTCTCCACATCTTTCAATTGTTACTGAGTTTCTTCATAG.....................................................................................................................................................................AGGAAGTTTGTACAGATTAATCCATCGACCCAACAATCAGTTAGATGAGCGCAGAAGGTTGAGGATGGCTCTTGATGCT................................................................................................GCTCGAGGAATGAACTATTTACACAACTGCACTCCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACGCGGATCCAGCTATTGCAGACATTATCATGATATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692025" ref_strand="+" ref_description="SGN-E692025 [LH_Ea07K07]">
      <seq>tctcgtgccgaattcggcacgaggcttcttctagagctgggcatgcaagatctgcttttacacatgcaagatctccttcgtggacagaaggtgttagctccccagctgcacacaaaatgaaagtaaaggatgcttcacaatacatgattgatgctgccaaagaaaatccacagctagctcaaaaactgcacactgttttacttgagagtggagttattgcaccaccaaacttgttcgctgagatctatccagaacaactagacgtatctcatatagagggaaaatccaggctagaggaaagagacgagttccagaaagtcaggggtcaatctgataagaatcgagcccgcttcttaccccctctgccttatcacagtccatactcaaagggcaatgcacgtggatcattggaacctcagccaaatgtgagagaagttggtgaacagcaagtctctagacagtctgaagtagctccaccaaaacatatgaaaaaagttcctgttgctgctgctgctgccgctgctgcagctgctgttgcctcttcgatggtagttgttgcagccaagactaaccctcagggggaccttcctgtagcagctgctgccacagccacagctgcagcagtagtagcaacaactgcagcagtcagtaagcaatatgaggcacaaggagactgtgaaagagttgatggagatgcagatactgctgtttatgagcaacagggatgtggtcatcaagagcatgaggcagcaggagcaaaatcagagggtgaaaggatatcagataaagtcaccggtaatgatagtactaaatcggatgtgacacttgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54786" stop="53258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54475" g_stop="53829" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="672" r_length="647" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53828" i_stop="53721" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53720" g_stop="53558" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="835" r_length="163" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E692025" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54475" e_stop="53829"/>
          <exon e_start="53720" e_stop="53558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAAAATGAAAGTAAAGGATGCTTCACAATACATGATCGATGCTGCCAAAGAAAATCCACAGCTAGCTCAAAAACTGCACACTGTTTTACTTGAGAGTGGAGTTATTGCACCACCAAACTTGTTCGCTGAGATCTATCCAGAACAACTAGACGTATCTCATATAGAGGGAAAATCCAGGCTAGAGGAAAGAGACGAGTTCCAGAAAGTCAGGGGTCAATCTGATAAGAATCGAGCCCGCTTCTTACCCCCTCTGCCTTATCACAGTCCATACTCAAAGGGCAATGCACGTGGATCATTGGAACCTCAGCCAAATGTGAGAGAAGTTGATGAACAGCAAGTCTCTAGACAGTCTGAAGTAGCTCCACCAAAACATATGAAAAAAGTTCCTGTTGCTGCTGCTGCTGCCGCTGCCGCAGCTGCTGTTGCCTCTTCGATGGTAGTTGTTGCAGCCAAGACTAACCCTCACGGGGACCTTCCCGTAGCAGCTGCTGCCACAGCCACAGCTGCAGCAGTAGTAGCAACAACTGCAGCAGTCAGTAAGCAATATGAGGCACAAGGAGGTATGTCCAACTTGTTAATGAATTTGTTGTTTCTTCTTGGCAACAAAATGAAAGCTTGGAGATATGTGCCATTGTCCAGTTAATCTTCTGTATTTCTTAATCATATAGACTGTGAAAGAGCTGATGGAGATGCAGATACTGCTGTTTATGAGCAACAGGGATGTGGTCATCAAGAGCATGAGGCAGCAGGAGCAAATTCAGAGGGCGAAAGGATGTCAGATAAGTCAACTAGTAATGATAGTACTAAATCGGATGTGACACTTGATGATGT</genome_strand>
        <mrna_strand>TTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAAAATGAAAGTAAAGGATGCTTCACAATACATGATTGATGCTGCCAAAGAAAATCCACAGCTAGCTCAAAAACTGCACACTGTTTTACTTGAGAGTGGAGTTATTGCACCACCAAACTTGTTCGCTGAGATCTATCCAGAACAACTAGACGTATCTCATATAGAGGGAAAATCCAGGCTAGAGGAAAGAGACGAGTTCCAGAAAGTCAGGGGTCAATCTGATAAGAATCGAGCCCGCTTCTTACCCCCTCTGCCTTATCACAGTCCATACTCAAAGGGCAATGCACGTGGATCATTGGAACCTCAGCCAAATGTGAGAGAAGTTGGTGAACAGCAAGTCTCTAGACAGTCTGAAGTAGCTCCACCAAAACATATGAAAAAAGTTCCTGTTGCTGCTGCTGCTGCCGCTGCTGCAGCTGCTGTTGCCTCTTCGATGGTAGTTGTTGCAGCCAAGACTAACCCTCAGGGGGACCTTCCTGTAGCAGCTGCTGCCACAGCCACAGCTGCAGCAGTAGTAGCAACAACTGCAGCAGTCAGTAAGCAATATGAGGCACAAGGAG............................................................................................................ACTGTGAAAGAGTTGATGGAGATGCAGATACTGCTGTTTATGAGCAACAGGGATGTGGTCATCAAGAGCATGAGGCAGCAGGAGCAAAATCAGAGGGTGAAAGGATATCAGATAAAGTCACCGGTAATGATAGTACTAAATCGGATGTGACACTTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202272" ref_strand="+" ref_description="SGN-E202272 [cLEC-6-M5]">
      <seq>gcatgttgcttgcatggagaagtattagttataatcttaaggcaactctagggagtatggttttgcctcttggttctttgaccattggattggctcgtcatcgtgcattgttattcaaggttctagctgatagtgtggggattccttgccgattagtaaaaggaaagcagtatacaggttcagatgatgttgcaatgaactatgtaaagatcgatggaagggagtatattgtcgatttgatggcagcccccggaacacttattccatctgacacatctggagtacatggagactatgaagagtctattctctccatcagtccatcctccaaagatgttgattctcatccaggttccaatagtagtgggattgcttcttcattgggagatcattcagactatggaacggcagacaagagatccaggtttgcggaaagcactagtgcaggaaatgaatctccctcttctggtaatccagaactgcaggaaacttcttctagagctgggcatgcaagatctgcttttacacatgcaagatctccttcgtggacagaaggtgttagctccccagctgcacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56871" stop="54086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56571" g_stop="56453" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56452" i_stop="55800" i_length="653">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55799" g_stop="55699" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55698" i_stop="54821" i_length="878">
            <donor d_prob="0.339" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54820" g_stop="54556" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="485" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54555" i_stop="54481" i_length="75">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54480" g_stop="54386" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="580" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E202272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56571" e_stop="56453"/>
          <exon e_start="55799" e_stop="55699"/>
          <exon e_start="54820" e_stop="54556"/>
          <exon e_start="54480" e_stop="54386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAGGTACTAAGCATTTTGGAGTCTTAAATCTATAGCAGTATTTGATTATAATTAGTTTGTGATATCTTTTAGTTTTCTCATGAAGTAATATCCCTTGCCTATTGACAACGAAAATGCCTGAGATACCCGAATATCCTAATCTCACTTCTAAAGCCTAATTTACTTGTATAGTTGGCTAGGACTCGGTACGTAGATGACTATTTAAAGAAGGGAATTCTACTTGTCGTAAAGGATGATTGTTCTGTGGATGGGGAACTTCATATAGAAAAATTAATTCATTTAAGCAGAACGTCAGCATAGGCATGGTTCAGTTCTAATCTGAATTAGCTCCAGTATTTGTCCCCTAGTTCTTGATCTTTCCAACTACTTGTCAGTATTCTGCATCCATTGCTGCTGTGACTGTACCTTATTGTTCTCTTTGATCCCTTTCGCAGATAGCAATTAATTCTGTCTGCATGATATTACTTGTCCATAGTTTTTATTTTGGTTTGATGCATTAGTCATTTCAATGGTGCTATTCTTTGTCAATCTGCTAATAATCACTATTATTTTTATTGTAGGTACTTGGTAATGGTTGGCTTTACCCTTTCATTTGCTATGCTTTGCTTATAACATCACATTTTTTTAATTCTCTTTTGCTTCTGAAAATTATTTAGGTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGATGTTGCAATGAACTATGTAAAGATCGATGGAAGGTTGCTGCTATTCACTTTACCTTCTTTCCTTGATGCTATAGATGCAATCTTTTTCTTTTATGTTCTCTCAGGTGGGGTATACATATTGAAACTTGGTCAGTATTTTCACTTTTCTTGGATATTCTTCCTTGGTTGGTTTGCATTGCACAAATACACCTTGTGGCTTAGTCAGAGAAAGTGTCAGCCTTATCAAACATGAAATGTAGTAACAAAGGGCCAAGGTAGGAGCTACTTAAGGCACATCACACATTGCTTAACGAAACAGGCGCAAACTGAAAAAAAAAAGATTTACATGATTGAAAAGAAAAACTATGAACACAAACACCAAGAATATTAGTAGGAAACTTGAAAAGGAAGTGCAATGAAGGGAAAAACATGTCAATCAAAGTAAATATCAATCTTAAGTTCCTGATCAAATTCAAGATACCTTTTTAAGTTTTTCACTAGTGACTAGTTTTCTTATAGATAATTCTAGAGTTCTGAGTTCCAATTCGTAATTGCTTAAGTGCTCATTAGTAAAGTTCCCTTAATAATTAATATATTTTCTCGCAAGTTACATCTACTGTTTTGCACCAGGCCTCTGAGGCTCATAAACTAACACAAACTTTGAAAAAGCTGTTGGTTGGCTGGTTTACGGCGCATACCTTAGTGCTTTCACTTGATGATCACCCGCCAGGCATTCACAATTAATTTGGACTATGAATTGATTTTTCTAATTTCCTTCACAATTTACAGCATTTTACGGTCTTAAATTGGTGCTGTTGTTTGTATGATGCAAGTATTTGTTGGTACATTGTCTGGGATAAATTTTTGCTGCAATAATTTCTTTTGCTGGGATTATTTTTTTTTTATGTACAAATTAGATGATACATTTGCAGGGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGTACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTTCATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAATCCAGAACTGCAGGTAAAAGCGGAAAAAGAATCTTATAATACCTTCCTTGATTTTACAAAGGCTTACAGTCCTAAGGAGCAAGGACAGGAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAA</genome_strand>
        <mrna_strand>GCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGATGTTGCAATGAACTATGTAAAGATCGATGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGTACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTTCATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAATCCAGAACTGCAG...........................................................................GAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334112" ref_strand="+" ref_description="SGN-E334112 [cTOD-21-G9]">
      <seq>caaatcagtttaggctcttctgccccagagaatgctcctgcagaagttgtagcatatcggtattggaattacaatgctctaagctatgatgacaagatcctggatggattttatgatttgtatggtgtcctcatggagtccaattcctcgaaaatgccctccctcattgatctgcaaagaacagaagtatcagatcatattagttgggaagccatccttatcagtaaagctgcggactccaagttgttgaaacttgaacagagagctctagagattgctgttgaggagaggtcaaaactcatggatttttcagccagcagtttggtacatgagcttgctgtgctagtttctgaccacatggggggcccagttgtggatccagagagcatgttgcttgcatggagaagtattagttataatcttaaggcaactctagggagtatggttttgcctcttggttctttgaccattggattggctcgtcatcgtgcattgttattcaaggttctagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58604" stop="56144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58304" g_stop="58239" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58238" i_stop="56891" i_length="1348">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56890" g_stop="56453" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="504" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E334112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58304" e_stop="58239"/>
          <exon e_start="56890" e_stop="56453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGTTTAGGCTCTTCTGCCCCAGAGAATGCTCCTGCAGAAGTTGTAGCATATCGGTATTGGGTATGTGCGTATGTGTCTATTTTGTTTCATTCATATCACAACTCTTGGCTTACTTTGCTCTAGGCACCTAAAGGCATGCTTAGCAAATCTGTTATCTTTTAGGTAAATATATTGTATATAGATTTTATTTCACAAAAGAAAAAGAAAAGGAAATGGCCATGTCATTTAATCCCTTGATCTGACTTACCTTGCTGAGGTAAATCGTGTATGCATTTTGAAGTTTGTATCTTCTTTTTTAATGGATGTGGTTGACCACTGCTGAACAGGAAACTACTGATTTAGTTTTTTTAATCAAATTTAGACTTTAGAATTCGAGCATTGTATTATAATGGTAATGGTCATTGTGCCTTGCTGTTGATTGTTTTTGTCATCCCTGAAAGGTATTGGTTAGTAGATTCATTAATCCTTATGCTGAATTAAGCAATTTGATTATCGGCTTTCATCTTTGAAGTCTGGGGATGGCCTCAAGCTGACTGGAGTGTGAACCTTTACATGATCAGGATTCACTTCTCAACAAAAACTAAAAACACTAGGTGATTTCTTGTCATCTACCTAACCATTGTTAAGTCAAACTACCCGGTACTTGTGCTGGTGGGAGGTAGAACTACCCGGTGGAATGATCCAGCTAAGCAAAAGCTGGCTCGGCACCATTGTTGTCACAAAAAGAGATATTGAAAGAAGTATAAAGGAAATTCGAATTGTGTCAGTTAGGAGGCGTACTGTTTATGGAAGGAACACCAATACAATTACTCATATCATAAGGTCCTGGGACATGGTATAAATGAGAACCTATTGGTAATAATGATAAGTCACTGGATATATGAGAATTCAAATGCTGTAGTGAAGGTAGTGGGAGAAAACAAAGTTTAGATTGACTGAGGAATTAAGTGATCAATGAGTATAAGACTTGATGGATATAGTTGAGGAGAGAGAGATGCCAAGTACAACCTCTACTGACATTATTGGACTAGAAATGTTGTAATGATTAGAATGGGGTAAGCTTGATATTGCGGGTAAGAAACACTGCCAAAGACTAAATATATTTTGCCTTCTAGATATCATAGTCATTGGCTCATAGCGATGCACATATTTTCTGGTTTCTACTTCTCCATATTCCTGTCTGGTGTTTAAGTGGTTCCAATAGCTTATCCGCCTTAAACAATCAGCAAGAAGGTATATTAGACAGCTACATTATCTAAAATATGGAGGGATTGATTTTGTTGTGTATAAATTGCTCTATTATTTCGTCAGATCAGTTTCTGTTTGTGCAAAAATTTCCCTTTCCTAGTCCTTATTCCTTTCTAACACATGACATATCTCATATTATAGATTTATCAATGCTTCACAGAATTACAATGCTCTAAGCTATGATGACAAGATCCTGGATGGATTTTATGATTTGTATGGTGTCCTCATGGAGTCCAATTCCTCGAAAATGCCCTCCCTCATTGATCTGCAAAGAACAGAAGTATCAGATCATATTAGTTGGGAAGCCATCCTTATCAGTAAAGCTGCGGACTCCAAGTTGTTGAAACTTGAACAGAGAGCTCTAGAGATTGCTGTTGAGGAGAGGTCAAAACTCATGGATTTTTCAGCCAGCAGTTTGGTACATGAGCTTGCTGTGCTAGTTTCTGACCACATGGGGGGCCCAGTTGTGGATCCAGAGAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAG</genome_strand>
        <mrna_strand>CAAATCAGTTTAGGCTCTTCTGCCCCAGAGAATGCTCCTGCAGAAGTTGTAGCATATCGGTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACAATGCTCTAAGCTATGATGACAAGATCCTGGATGGATTTTATGATTTGTATGGTGTCCTCATGGAGTCCAATTCCTCGAAAATGCCCTCCCTCATTGATCTGCAAAGAACAGAAGTATCAGATCATATTAGTTGGGAAGCCATCCTTATCAGTAAAGCTGCGGACTCCAAGTTGTTGAAACTTGAACAGAGAGCTCTAGAGATTGCTGTTGAGGAGAGGTCAAAACTCATGGATTTTTCAGCCAGCAGTTTGGTACATGAGCTTGCTGTGCTAGTTTCTGACCACATGGGGGGCCCAGTTGTGGATCCAGAGAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737043" ref_strand="+" ref_description="SGN-E737043 [LC08BB05]">
      <seq>atcttcatttgcattttcatacccttttcttggtttgctctagctgtttaagggataaaggaacaatcttttttggtttaggctgagttcttgaatttgtgttcaagattgagtctttttgctgctcagtagggaagtggtaactggagtttcttcacaaacgaagtaaagtttggttcttggatttgatttggttaaaaacaagcttaaactatgcagttcttgttattacaggttttaaggtaagagatttgtaactgtgattcatgattgtagtgggacaatggagagtgttgaggaatgagaaagtcctatacgttggtggttaaggagataggtggtctccgtcttggatagttcatcaccagtgagctagcttccggagttgagttagactcgggatccatttatttactgagaggtttatggccagcttttttgtttctttagtacaactactaagcattgtggtttagtgaatacaacaatgaaaaattttctcaagaaacttcatattgggcccaaccaatcagaagattcagaaggatcaacatcttcctcaaggagcaagaaattaactgatgtttcatcacctgaaaagcattcaagctctagaagctatcatgggtctgataataaacctttttcagcaatttcaggatggttaaattcagttacaaataggcatagtcccagtcctccgtcttcctcaaatgtgaatagagggaatagaatggaacattctgactctgtcagtattgggggcactgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59517" stop="58144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59217" g_stop="58444" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E737043" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59217" e_stop="58444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCATTTGCATTTTCATACCCTTTTCTTGGTTTGCTCTAGCTGTTTAAGGGATAAAGGAACAATCTTTTTTGGTTTAGGCTGAGTTCTTGAATTTGTGTTCAAGATTGAGTCTTTTTGCTGCTCAGTAGGGAAGTGGTAACTGGAGTTTCTTCACAAACGAAGTAAAGTTTGGTTCTTGGATTTGATTTGGTTAAAAACAAGCTTAAACTATGCAGTTCTTGTTATTACAGGTTTTAAGGTAAGAGATTTGTAACTGTGATTCATGATTGTAGTGGGACAATGGAGAGTGTTGAGGAATGAGAAAGTCCTATACGTTGGTGGTTAAGGAGATAGGTGGTCTCCGTCTTGGATAGTTCATCACCAGTGAGCTAGCTTCCGGAGTTGAGTTAGACTCGGGATCCATTTATTTACTGAGAGGTTTATGGCCAGCTTTTTTGTTTCTTTAGTACAACTACTAAGCATTGTGGTTTAGTGAATACAACAATGAAAAATTTTCTCAAGAAACTTCATATTGGGTCCAACCAATCAGAAGATTCAGAAGGATCAACATCTTCCTCAAGGAGCAAGAAATTAACTGATGTTTCATCACCTGAAAAGCATTCAAGCTCTAGAAGCTATCATGGGTCTGATAATAAACCTTTTTCAGCAATTTCAGGATGGTTAAATTCAGTTACAAATAGGCATAGTCCCAGTCCTCCGTCTTCCTCAAATGTGAATAGAGGGAATAGAATGGAACATTCTGACTCTGTCAGTATTGGTGGCACTGATGC</genome_strand>
        <mrna_strand>ATCTTCATTTGCATTTTCATACCCTTTTCTTGGTTTGCTCTAGCTGTTTAAGGGATAAAGGAACAATCTTTTTTGGTTTAGGCTGAGTTCTTGAATTTGTGTTCAAGATTGAGTCTTTTTGCTGCTCAGTAGGGAAGTGGTAACTGGAGTTTCTTCACAAACGAAGTAAAGTTTGGTTCTTGGATTTGATTTGGTTAAAAACAAGCTTAAACTATGCAGTTCTTGTTATTACAGGTTTTAAGGTAAGAGATTTGTAACTGTGATTCATGATTGTAGTGGGACAATGGAGAGTGTTGAGGAATGAGAAAGTCCTATACGTTGGTGGTTAAGGAGATAGGTGGTCTCCGTCTTGGATAGTTCATCACCAGTGAGCTAGCTTCCGGAGTTGAGTTAGACTCGGGATCCATTTATTTACTGAGAGGTTTATGGCCAGCTTTTTTGTTTCTTTAGTACAACTACTAAGCATTGTGGTTTAGTGAATACAACAATGAAAAATTTTCTCAAGAAACTTCATATTGGGCCCAACCAATCAGAAGATTCAGAAGGATCAACATCTTCCTCAAGGAGCAAGAAATTAACTGATGTTTCATCACCTGAAAAGCATTCAAGCTCTAGAAGCTATCATGGGTCTGATAATAAACCTTTTTCAGCAATTTCAGGATGGTTAAATTCAGTTACAAATAGGCATAGTCCCAGTCCTCCGTCTTCCTCAAATGTGAATAGAGGGAATAGAATGGAACATTCTGACTCTGTCAGTATTGGGGGCACTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580161" ref_strand="+" ref_description="SGN-E580161 [5404]">
      <seq>cacaacaccaagaaactcggaagaaaccgctgtattttgtggtggcaactggcaaaatagagagagaaaaacatattagcgtggaatgctgagatcttgtggtggcaaatcaagaatcaacacgacagattaggggaattcataaaaaaagaaaagacaagggggtgcagtagtagtttatggggggtggtagtacattcgtggacggagttcgtcgtttgtttcatcgtcgttcaagtactactactactattactactattgtccataccaatgcagaaccgatcttgaacaatcttgaaaaacccatcaagatttcagactcacaataccaagaagaagaagaaggagagcttatcattattgaagactttgacatttcgggtcttaagtttatcagagttcctaaaagggttgatttccctttttcatctgcttcttatcaaatggatcatcacagaaagaactcaccaggaaggcagagttcttcacagaatatggagaagcaagcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66302" stop="68286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66602" g_stop="67061" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67338" i_length="277">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67339" g_stop="67348" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="474" r_length="10" r_score="0.300"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67349" i_stop="67945" i_length="597">
            <donor d_prob="0.878" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67946" g_stop="67986" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="516" r_length="42" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E580161" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66602" e_stop="67061"/>
          <exon e_start="67339" e_stop="67348"/>
          <exon e_start="67946" e_stop="67986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACACCAAGAAACTCGGAAGAAACCGCTGTATTTTGTGGTGGCAACTGTCAAGAAAGAGAGAGAAAAACATATTGGCGTGGAAAGCTGAGATCTTGTGGTCGCAAATCAAGAATCAACACGACAGACTAGGGGAATTC--AAAAAAA-AAAAGACAAGGGGGGTGTTAGTAGTAGTATATGGGGGGTGGTAGTACATTTGTGGACGGAGTTCGTCGTTTGTTTCATCGTCGTTCAAG---TACTACTACTATTACTACTATTGTTCATACCAATGCAGAACCGATCTTGAACAATCTTGAAAAACCCATTAAGATTTCAGACTCAAAATACCAAGAAGAAGAAGGAGGAGAGCTTACCATTATTGAAGACTTTGACATTTCGGGTCTTAAGTTTATAAGAGTTCCTAAAAGGGTTGATTTCCCTTTTTCATCTGCTTCTTATCAAATGGATCATCACAGAAAGGTTTGATTTTTCCCTTTATTTTGTTCGCTTTTTATTGACTTTTTTTTTTGCTTTTTGATTTTGCATGGAGTTGATTAAGTTTGACCATCATTTTACTGCTCAATCTGATGTTGATGTCAGTTATTCATGTATGTAGACACAAATTGGTTTCCCACCTGAGAATTTGGTTGATATATGTAGAAAATATTGCTAAAAAAGGATGAGGGAAAGTAAAGCTTGCAACTTTACTCATTTTGGATCTTTCTGTCTATTTGCTTATGTCATTGAAATGAAACAGATATTTATTGGTAAGTCACAGTTACTCACCCCCACCTCAAAAGAAAACTTATCTGAACTATCTTTCTTTCCTACCTAAGAATCTTGTAGTCTGTTTGGTCGGAATCCCCTGCTCGTTATTGCCATGCGCTTTTCTCTTGGAGGCAAACAAAAGATGTGTGTGTGTGTGTTAGATTATAATATTTGCTATCTTCATAATTGCTAATCTAAGGAAAACTGAAGTTCTTGCTACCAATGACGAGTGGGATTTCACTTGGTATCTTGTTGTTGTTGCTACCAATGACCAGTGTTTTGTAGAATCTTGTGTCTGTTAGATTTTATCAAGACCTATCAGACTTGTCTTCTTCATATGAGGAGGATCATGTTTCAAGCATCAGTTTTGTGGTGTTTTTATTTTTTCTATATTATTGTGTGTTCATTTCCTTGCACATAAAGTAGCGTTAGACCATTATGCAGATTACTATCATGTGGCATATTAGTGCCTAATGAACTTTTCAGTTCTATGTAGACTTACATGGGTAAGGAAATGGGAAGATGCAGCTGTATTATACTGCAGATATCAGTCACACATTTGTTTTGACTTGAATATTGTTATTCAAAACTCACAGG-AGGCAGAGTTCTTCACAGAATATGGAGAGGCAAGCAGATA</genome_strand>
        <mrna_strand>CACAACACCAAGAAACTCGGAAGAAACCGCTGTATTTTGTGGTGGCAACTGGCAAAATAGAGAGAGAAAAACATATTAGCGTGGAATGCTGAGATCTTGTGGTGGCAAATCAAGAATCAACACGACAGATTAGGGGAATTCATAAAAAAAGAAAAGACAA-GGGGGTG-CAGTAGTAGTTTATGGGGGGTGGTAGTACATTCGTGGACGGAGTTCGTCGTTTGTTTCATCGTCGTTCAAGTACTACTACTACTATTACTACTATTGTCCATACCAATGCAGAACCGATCTTGAACAATCTTGAAAAACCCATCAAGATTTCAGACTCACAATACCAAGAAGAAGAAGAAGGAGAGCTTATCATTATTGAAGACTTTGACATTTCGGGTCTTAAGTTTATCAGAGTTCCTAAAAGGGTTGATTTCCCTTTTTCATCTGCTTCTTATCAAATGGATCATCACAGAAAG.....................................................................................................................................................................................................................................................................................AACTCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCAGAGTTCTTCACAGAATATGGAGAAGCAAGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581916" ref_strand="+" ref_description="SGN-E581916 [7547]">
      <seq>ctgtattttgtggtggcaactggcaaaatagagagagaaaaacatattagcgtggaatgctgagatcttgtggtggcaaatcaagaatcaacacgacagattagggaattcataaaaaaagaaaagacaagggggtgcagtagtagtttatggggggtggtagtacattcgtggacggagttcgtcgtttgtttcatcgtcgttcaagtactactactactattactacatattgtccataccaatgcagaaccgatcttgaacaatcttgaaaaacccatcaagatttcagactcacaataccaagaagaagaagaaggagagcttatcattattgaagactttgacatttcgggtcttaagtttatcagagttcctaaaagggttgatttccctttttcatctgcttcttatcaaatggatcatcacagaaagaactcacaggaggcagagttcttcacagaatatggagaagcaaggcagataccaagttcaggaagttatcggcaagggtagctatggagttgtggcctccggttgttgataccaaaatggagaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66331" stop="68363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66631" g_stop="67061" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67936" i_length="875">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67937" g_stop="68063" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="563" r_length="128" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E581916" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66631" e_stop="67061"/>
          <exon e_start="67937" e_stop="68063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTTTGTGGTGGCAACTGTCAAGAAAGAGAGAGAAAAACATATTGGCGTGGAAAGCTGAGATCTTGTGGTCGCAAATCAAGAATCAACACGACAGACTAGGGGAATTC--AAAAAAA-AAAAGACAAGGGGGGTGTTAGTAGTAGTATATGGGGGGTGGTAGTACATTTGTGGACGGAGTTCGTCGTTTGTTTCATCGTCGTTCAAG---TACTACTACTATTACTAC-TATTGTTCATACCAATGCAGAACCGATCTTGAACAATCTTGAAAAACCCATTAAGATTTCAGACTCAAAATACCAAGAAGAAGAAGGAGGAGAGCTTACCATTATTGAAGACTTTGACATTTCGGGTCTTAAGTTTATAAGAGTTCCTAAAAGGGTTGATTTCCCTTTTTCATCTGCTTCTTATCAAATGGATCATCACAGAAAGGTTTGATTTTTCCCTTTATTTTGTTCGCTTTTTATTGACTTTTTTTTTTGCTTTTTGATTTTGCATGGAGTTGATTAAGTTTGACCATCATTTTACTGCTCAATCTGATGTTGATGTCAGTTATTCATGTATGTAGACACAAATTGGTTTCCCACCTGAGAATTTGGTTGATATATGTAGAAAATATTGCTAAAAAAGGATGAGGGAAAGTAAAGCTTGCAACTTTACTCATTTTGGATCTTTCTGTCTATTTGCTTATGTCATTGAAATGAAACAGATATTTATTGGTAAGTCACAGTTACTCACCCCCACCTCAAAAGAAAACTTATCTGAACTATCTTTCTTTCCTACCTAAGAATCTTGTAGTCTGTTTGGTCGGAATCCCCTGCTCGTTATTGCCATGCGCTTTTCTCTTGGAGGCAAACAAAAGATGTGTGTGTGTGTGTTAGATTATAATATTTGCTATCTTCATAATTGCTAATCTAAGGAAAACTGAAGTTCTTGCTACCAATGACGAGTGGGATTTCACTTGGTATCTTGTTGTTGTTGCTACCAATGACCAGTGTTTTGTAGAATCTTGTGTCTGTTAGATTTTATCAAGACCTATCAGACTTGTCTTCTTCATATGAGGAGGATCATGTTTCAAGCATCAGTTTTGTGGTGTTTTTATTTTTTCTATATTATTGTGTGTTCATTTCCTTGCACATAAAGTAGCGTTAGACCATTATGCAGATTACTATCATGTGGCATATTAGTGCCTAATGAACTTTTCAGTTCTATGTAGACTTACATGGGTAAGGAAATGGGAAGATGCAGCTGTATTATACTGCAGATATCAGTCACACATTTGTTTTGACTTGAATATTGTTATTCAAAACTCACAGGAGGCAGAGTTCTTCACAGAATATGGAGAGGCAA-GCAGATACCAAATTCAGGAAGTTATCGGCAAGGGTAGCTATGGAGTTGTGGCCT-CGGCTGTTGATACCAAAACTGGAGAAAGAG</genome_strand>
        <mrna_strand>CTGTATTTTGTGGTGGCAACTGGCAAAATAGAGAGAGAAAAACATATTAGCGTGGAATGCTGAGATCTTGTGGTGGCAAATCAAGAATCAACACGACAGATTA-GGGAATTCATAAAAAAAGAAAAGACAA-GGGGGTG-CAGTAGTAGTTTATGGGGGGTGGTAGTACATTCGTGGACGGAGTTCGTCGTTTGTTTCATCGTCGTTCAAGTACTACTACTACTATTACTACATATTGTCCATACCAATGCAGAACCGATCTTGAACAATCTTGAAAAACCCATCAAGATTTCAGACTCACAATACCAAGAAGAAGAAGAAGGAGAGCTTATCATTATTGAAGACTTTGACATTTCGGGTCTTAAGTTTATCAGAGTTCCTAAAAGGGTTGATTTCCCTTTTTCATCTGCTTCTTATCAAATGGATCATCACAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCACAGGAGGCAGAGTTCTTCACAGAATATGGAGAAGCAAGGCAGATACCAAGTTCAGGAAGTTATCGGCAAGGGTAGCTATGGAGTTGTGGCCTCCGGTTGTTGATACCAAAA-TGGAGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442589" ref_strand="+" ref_description="SGN-E442589 [cSTA-34-I13]">
      <seq>ctttgatgccactagaattttaagagaaattaagctacttcggcttctacgacatcctgatatcgtagaaataaagcacatcatgttgcccccttctcggcgagagtttaaagatatttacgtcgtctttgaattgatggagtctgatctccaccaggttattaaggccaatgatgatcttacacctgagcattatcagtttttcctataccagcttatgcgtggattaaaatatactcatactggtttgttttttatacaagttgaaaccttctctttgacatctctatgtaatggagaagctaacttttcctcgggacctcttaacagcaaacgttttccatcgagatttaaagccgaagaatattcttgctaacgctgactgtaaattgaagatttgtgactttgggcttgctcgtgtatcatttaatgacacaccctcagctattttctggactgactatgtagctacccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67801" stop="68876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68101" g_stop="68558" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68559" i_stop="68654" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68655" g_stop="68672" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="476" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E442589" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68101" e_stop="68558"/>
          <exon e_start="68655" e_stop="68672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGCCACTAGAATTTTAAGAGAAATTAAGCTTCTTCGGCTTCTACGGCATCCTGATATCGTAGAAATAAAGCACATCATGTTGCCCCCTTCTCGGCGAGAGTTTAAAGATATATATGTCGTCTTTGAATTGATGGAGTCTGATCTCCACCAGGTTATTAAGGCCAATGATGATCTTACACCTGAGCATTATCAGTTTTTCCTATATCAGCTTATGCGAGGATTAAAATATACTCATACTGGTTTGTTTTTTATACAAGTTGAAACCTTCTCTTTGACATCTCTATGTAATGGAGAAGCTAACTTTTCCTCGGGACCTCTTAACAGCAAACGTTTTCCATCGAGATTTAAAGCCGAAGAATATTCTTGCTAATGCTGACTGTAAATTGAAGATTTGTGACTTCGGGCTTGCTCGTGTATCATTTAATGACACACCCTCAGCTATTTTCTGGACTGTATGTTTGATCTCTAGAAGGCTTCTCTTTTCTCATTATTTTAGTACTCAAATTTGTGAGTGATTTCTGATATACTTGTTGTTTGATGTATTTAAGGATTATGTTGCTACTCGA</genome_strand>
        <mrna_strand>CTTTGATGCCACTAGAATTTTAAGAGAAATTAAGCTACTTCGGCTTCTACGACATCCTGATATCGTAGAAATAAAGCACATCATGTTGCCCCCTTCTCGGCGAGAGTTTAAAGATATTTACGTCGTCTTTGAATTGATGGAGTCTGATCTCCACCAGGTTATTAAGGCCAATGATGATCTTACACCTGAGCATTATCAGTTTTTCCTATACCAGCTTATGCGTGGATTAAAATATACTCATACTGGTTTGTTTTTTATACAAGTTGAAACCTTCTCTTTGACATCTCTATGTAATGGAGAAGCTAACTTTTCCTCGGGACCTCTTAACAGCAAACGTTTTCCATCGAGATTTAAAGCCGAAGAATATTCTTGCTAACGCTGACTGTAAATTGAAGATTTGTGACTTTGGGCTTGCTCGTGTATCATTTAATGACACACCCTCAGCTATTTTCTGGACT................................................................................................GACTATGTAGCTACCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722351" ref_strand="+" ref_description="SGN-E722351 [FC17AA09]">
      <seq>aatcggccgaattgctctccattttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77520" stop="78974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77808" g_stop="78674" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E722351" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77808" e_stop="78674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGAGTTTTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATC</genome_strand>
        <mrna_strand>AATCGGCCGA-ATTGCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729094" ref_strand="+" ref_description="SGN-E729094 [LA19DH07]">
      <seq>gtttttctctccttttaatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgacgtctgacggcatgtttgcactcttcggttcatgggacggagagctccgtttatgggatcttcaagctggaacaactgctccttttttcgttgaacacactggggatgttctctctgccgcattctatgaagacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77519" stop="78518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77817" g_stop="78254" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E729094" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77817" e_stop="78254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAAC</genome_strand>
        <mrna_strand>GTTTTTCTCTCC-TTTTAATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGACGTCTGACGGCATGTTTGCACTCTTCGGTTCATGGGACGGAGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCCTTTTTTCGTTGAACACACTGGGGATGTTCTCTCTGCCGCATTCTATGAAGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722431" ref_strand="+" ref_description="SGN-E722431 [FC17BA09]">
      <seq>ggcggccaaatcggccgaattgctctccattttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaaaatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcaaattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77520" stop="78926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77819" g_stop="78626" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="826" r_length="808" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E722431" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77819" e_stop="78626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGT</genome_strand>
        <mrna_strand>ATTGCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAAATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAAATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746656" ref_strand="+" ref_description="SGN-E746656 [GI|47104094]">
      <seq>ttctctccattttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77521" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="78779" g_length="959"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="959" r_length="959" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80532" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1233" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1234" polyA_stop="1247"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E746656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1233</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="78779"/>
          <exon e_start="80259" e_stop="80532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTA</genome_strand>
        <mrna_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719174" ref_strand="+" ref_description="SGN-E719174 [FC06DH10]">
      <seq>atcggccgaattgatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctaccggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77532" stop="78929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="78629" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E719174" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="78629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTT</genome_strand>
        <mrna_strand>ATCG-GCCGAATTGATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTACCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721438" ref_strand="+" ref_description="SGN-E721438 [FC13DF09]">
      <seq>gggcgattggcggccaatcggccgaattctctccattttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77521" stop="78927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="78627" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="833" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E721438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="78627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTT</genome_strand>
        <mrna_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271353" ref_strand="+" ref_description="SGN-E271353 [cLEM-5-G7]">
      <seq>ttctctccattttcatctccgcctctcctttctctgccagcaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77521" stop="78570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="78270" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E271353" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="78270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTG</genome_strand>
        <mrna_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCAGCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271666" ref_strand="+" ref_description="SGN-E271666 [cLEM-23-I10]">
      <seq>ttctctccattttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77521" stop="78558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="78258" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E271666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="78258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTC</genome_strand>
        <mrna_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723325" ref_strand="+" ref_description="SGN-E723325 [FC20AF07]">
      <seq>gctctccattttcatccctttatcgcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77544" stop="78988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77822" g_stop="78688" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E723325" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77822" e_stop="78688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTT</genome_strand>
        <mrna_strand>GCTCTCCATTTTCATCCCTTTATCGCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339397" ref_strand="+" ref_description="SGN-E339397 [cTOF-4-A16]">
      <seq>ttttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgntgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77530" stop="78878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77830" g_stop="78578" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E339397" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77830" e_stop="78578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGG</genome_strand>
        <mrna_strand>TTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGNTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316878" ref_strand="+" ref_description="SGN-E316878 [cTOA-27-G8]">
      <seq>atctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77535" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77835" g_stop="78497" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E316878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77835" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>ATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427659" ref_strand="+" ref_description="SGN-E427659 [STM-48-J20]">
      <seq>ctccgcctctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactacagatgttctctctgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77537" stop="78651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77837" g_stop="78351" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E427659" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77837" e_stop="78351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTG</genome_strand>
        <mrna_strand>CTCCGCCTCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTACAGATGTTCTCTCTGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730835" ref_strand="+" ref_description="SGN-E730835 [LA25BD06]">
      <seq>tccgcctctccttcctttgagccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcctgatgctggctccattatccacaccctctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77560" stop="78927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77838" g_stop="78627" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E730835" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77838" e_stop="78627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTT</genome_strand>
        <mrna_strand>TCCGCCTCTCCTTCCTTTG-AGCCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCCTGATGCTGGCTCCATTATCCACACCCTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599457" ref_strand="+" ref_description="SGN-E599457 [52445]">
      <seq>tccgcctctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77538" stop="78798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77838" g_stop="78498" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E599457" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77838" e_stop="78498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTG</genome_strand>
        <mrna_strand>TCCGCCTCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726787" ref_strand="+" ref_description="SGN-E726787 [LA12DC07]">
      <seq>ccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaggtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77539" stop="78984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77839" g_stop="78684" g_length="846"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E726787" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77839" e_stop="78684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGG</genome_strand>
        <mrna_strand>CCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAGGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440668" ref_strand="+" ref_description="SGN-E440668 [cSTA-18-C17]">
      <seq>ccgcctctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgctttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77539" stop="78545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77839" g_stop="78245" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E440668" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77839" e_stop="78245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCT</genome_strand>
        <mrna_strand>CCGCCTCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553866" ref_strand="+" ref_description="SGN-E553866 [cTSC-2-H23]">
      <seq>cgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaagtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77540" stop="78917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77840" g_stop="78617" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E553866" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77840" e_stop="78617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCAC</genome_strand>
        <mrna_strand>CGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAAGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558844" ref_strand="+" ref_description="SGN-E558844 [18247]">
      <seq>cgcctctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagaccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtgggctgtgtctccagatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77540" stop="78819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77840" g_stop="78519" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E558844" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77840" e_stop="78519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGT-GGCCGTGTCCCCAGATGGTT</genome_strand>
        <mrna_strand>CGCCTCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGACCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGGCTGTGTCTCCAGATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558382" ref_strand="+" ref_description="SGN-E558382 [17713]">
      <seq>cgcctctccattctctgcaccaaaggtgatttcactgacggncgccaccaatctgacaaaatgtcggcaagaatcactagtcctccggcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgacgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagcgtggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttggtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77540" stop="78789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77840" g_stop="78489" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E558382" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77840" e_stop="78489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTC-GCAAGAATCACTAGTCCTCC-GCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGC-TGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT-GTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATG</genome_strand>
        <mrna_strand>CGCCTCTCCATTCTCTG-CACCAAAGGTGATTTCACTGACGGNCGCCACCAATCTGACAAAATGTCGGCAAGAATCACTAGTCCTCCGGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGACGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCGTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587496" ref_strand="+" ref_description="SGN-E587496 [41028]">
      <seq>cgcctctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggnataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctgggaaatcttaccaactgtaagcctcagtccactcttgccgggacaaccagtgcggtatgtgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77540" stop="78796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77840" g_stop="78474" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E587496" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77840" e_stop="78474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGG-ATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCT-GG-AATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGG</genome_strand>
        <mrna_strand>CGCCTCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGNATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGGAAATCTTACCAACTGTAAGCCTCAGTCCACTCTTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446973" ref_strand="+" ref_description="SGN-E446973 [cSTA-23-J10]">
      <seq>cgcctctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77540" stop="78741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77840" g_stop="78441" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E446973" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77840" e_stop="78441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATC</genome_strand>
        <mrna_strand>CGCCTCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264449" ref_strand="+" ref_description="SGN-E264449 [cLEG-67-P21]">
      <seq>gcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggatcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaacatgttctatctgttggattctctgttgacaaccgacgaagtgtctctgcttcccgtgacaagaccatcaagctatggaacacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77541" stop="78608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77841" g_stop="78308" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E264449" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77841" e_stop="78308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTC</genome_strand>
        <mrna_strand>GCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGATCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAACATGTTCTATCTGTTGGATTCTCTGTTGACAACCGACGAAGTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563685" ref_strand="+" ref_description="SGN-E563685 [2126]">
      <seq>gcctctccattctctggccaccaaaggtgatttcactgacggccgccaccaatctgacaaatgtcgcaagaatcactagtcctccgcggcaccatgtaaagcccacactgactgggtcactgctattgcaaccccagattgacaactccgacatgattgtcacctcctccaggggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgtatgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccggtttatgggatcttcaagctggaaccactgctcgtcgtttcgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77541" stop="78511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77841" g_stop="78211" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E563685" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77841" e_stop="78211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCCTTTCTCT-GCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATG-AAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCA-ATTGACAACTCCGACATGATTGTCACCTCCTCCA-GGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGT-TGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCC-GTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGG</genome_strand>
        <mrna_strand>GCCTCTCCATTCTCTGGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGA-CAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGTAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAGATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTATGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443894" ref_strand="+" ref_description="SGN-E443894 [cSTA-40-H23]">
      <seq>ggctgcaggaattcggcacgagggcctctccattctctgccaccaaaggggatttcactgacggccgccaccgatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctactgcagggataagtacatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacgggcatttcgttgaagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77541" stop="78409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77841" g_stop="78109" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="292" r_length="269" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E443894" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77841" e_stop="78109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGT</genome_strand>
        <mrna_strand>GCCTCTCCATTCTCTGCCACCAAAGGGGATTTCACTGACGGCCGCCACCGATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTACTGCAGGGATAAGTACATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGGCATTTCGTTGAAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452537" ref_strand="+" ref_description="SGN-E452537 [cSTS-17-K21]">
      <seq>tctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctctggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77544" stop="78741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77844" g_stop="78441" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E452537" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77844" e_stop="78441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATC</genome_strand>
        <mrna_strand>TCTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCTGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555289" ref_strand="+" ref_description="SGN-E555289 [cTSC-1-B12]">
      <seq>ctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagncaaagcatcgtggttgatctttaagttgatctngaacaagagagtgaaatgttcggaactgctgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="79063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78763" g_length="919"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="919" r_length="919" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E555289" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTAC</genome_strand>
        <mrna_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGNCAAAGCATCGTGGTTGATCTTTAAGTTGATCTNGAACAAGAGAGTGAAATGTTCGGAACTGCTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727739" ref_strand="+" ref_description="SGN-E727739 [LA15CD09]">
      <seq>ctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttaccccgaataggtaatggctctgtgctgctactgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78667" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E727739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATC</genome_strand>
        <mrna_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTACCCCGAATAGGTAATGGCTCTGTGCTGCTACTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706579" ref_strand="+" ref_description="SGN-E706579 [FA30BD10]">
      <seq>ctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78629" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E706579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTT</genome_strand>
        <mrna_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699815" ref_strand="+" ref_description="SGN-E699815 [FA11BB09]">
      <seq>ctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccaaatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccaccccctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78625" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E699815" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTG</genome_strand>
        <mrna_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAAATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACCCCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730208" ref_strand="+" ref_description="SGN-E730208 [LA23BF07]">
      <seq>ctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttccttgtgtgctagcgcagggaaagatggtgtcatattgctatgggattctgctgaagggaaaaaactgtactctcttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78601" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E730208" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGC</genome_strand>
        <mrna_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCCTTGTGTGCTAGCGCAGGGAAAGATGGTGTCATATTGCTATGGGATTCTGCTGAAGGGAAAAAACTGTACTCTCTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440341" ref_strand="+" ref_description="SGN-E440341 [cSTA-16-K20]">
      <seq>ctccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78357" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E440341" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGG</genome_strand>
        <mrna_strand>CTCCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582045" ref_strand="+" ref_description="SGN-E582045 [7678]">
      <seq>ctccattctctgncaccaaaggtgatttcactgacggccgtcaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcaagattgtctctgcttcccgtgacaagaccatcaagctctgggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78350" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E582045" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTC-AGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTAT-GGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCT</genome_strand>
        <mrna_strand>CTCCATTCTCTGNCACCAAAGGTGATTTCACTGACGGCCGTCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443918" ref_strand="+" ref_description="SGN-E443918 [cSTA-40-P5]">
      <seq>ctccattctctgccaccaaaggtgatggcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77545" stop="78501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="78201" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E443918" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="78201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTC</genome_strand>
        <mrna_strand>CTCCATTCTCTGCCACCAAAGGTGATGGCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343767" ref_strand="+" ref_description="SGN-E343767 [cTOF-12-A1]">
      <seq>tcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaaagagatcgacgcgagccatttggccaatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77546" stop="80701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77846" g_stop="78433" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78434" i_stop="80281" i_length="1848">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80282" g_stop="80401" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="708" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E343767" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77846" e_stop="78433"/>
          <exon e_start="80282" e_stop="80401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAA</genome_strand>
        <mrna_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAAGAGATCGACGCGAGCCATTTGGCCAATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317151" ref_strand="+" ref_description="SGN-E317151 [cTOA-27-N6]">
      <seq>tcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatgggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctcccgttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaccgtcagattgtctctgctttccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttnttgtgtccgttttagcccaaataatcttcagcccactattgtgtctgggtcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaaagaactgtactctcttgatgctggctccattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77546" stop="78914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77846" g_stop="78614" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E317151" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77846" e_stop="78614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACAT-GGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATC</genome_strand>
        <mrna_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCCGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGAC-ACCGTCAGATTGTCTCTGCTTTCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTNTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGGTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAAGAACTGTACTCTCTTGATGCTGGCTCCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332833" ref_strand="+" ref_description="SGN-E332833 [cTOD-18-H14]">
      <seq>tcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77546" stop="78796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77846" g_stop="78496" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E332833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77846" e_stop="78496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATAC</genome_strand>
        <mrna_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301227" ref_strand="+" ref_description="SGN-E301227 [cLEW-24-E5]">
      <seq>tcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77546" stop="78545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77846" g_stop="78245" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E301227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77846" e_stop="78245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCT</genome_strand>
        <mrna_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691979" ref_strand="+" ref_description="SGN-E691979 [LH_Ea07I09]">
      <seq>tattactctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgttgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtgaaaatctggaatctcaccaactgtaagctcaggtccactctcgcgggacacagtgggtatgtaaatactgtggccgtgtctccagatggttccttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacacccttttgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77549" stop="78988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78688" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E691979" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCC-TCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTT</genome_strand>
        <mrna_strand>TATTACTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTTGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCCACTCTCGCGGGACACAGTGGGTATGTAAATACTGTGGCCGTGTCTCCAGATGGTTCCTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTTTTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416873" ref_strand="+" ref_description="SGN-E416873 [STM-23-J6]">
      <seq>ccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggctgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77547" stop="78873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78573" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E416873" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTG</genome_strand>
        <mrna_strand>CCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCTGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484564" ref_strand="+" ref_description="SGN-E484564 [cSTE-13-H14]">
      <seq>ccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgttaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctaccggaggggaagatggagtcatattgctatgggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77547" stop="78868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78568" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E484564" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTT</genome_strand>
        <mrna_strand>CCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTTAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTACCGGAGGGGAAGATGGAGTCATATTGCTATGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692467" ref_strand="+" ref_description="SGN-E692467 [LH_Ea08M17]">
      <seq>tattactctgccaccaaaggtgatttcactgacggccgcctccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgttgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcaacccactattgtgtctggttcatgggatcgcactgtgaaaatctggaatctcaccaactgtaagctcaggtccactctcgcgggacacagtgggtatgtaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77549" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78497" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E692467" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>TATTACTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCTCCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTTGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAACCCACTATTGTGTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCCACTCTCGCGGGACACAGTGGGTATGTAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612870" ref_strand="+" ref_description="SGN-E612870 [62638]">
      <seq>ccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcgggtgagtgccaagtacacaattcagggaacaggattcacactctgattggggttcttgtgtcccgttttaagcccaaataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77547" stop="78688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78388" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E612870" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCC-AATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTC-GGTGAGTG-CAAGTACACAATTCA-GGAACAGGATTCACACTCTGATTGGGTTTCTTGTGT-CCGTTTT-AGCCCAAATAATCT</genome_strand>
        <mrna_strand>CCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGGTGAGTGCCAAGTACACAATTCAGGGAACAGGATTCACACTCTGATTGGGGTTCTTGTGTCCCGTTTTAAGCCCAAATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442244" ref_strand="+" ref_description="SGN-E442244 [cSTA-32-O12]">
      <seq>ccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtggcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77547" stop="78656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78356" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E442244" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGG</genome_strand>
        <mrna_strand>CCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTGGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439694" ref_strand="+" ref_description="SGN-E439694 [cSTA-13-M23]">
      <seq>ccattctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77547" stop="78654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77847" g_stop="78354" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E439694" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77847" e_stop="78354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATT</genome_strand>
        <mrna_strand>CCATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729522" ref_strand="+" ref_description="SGN-E729522 [LA21BC08]">
      <seq>ctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttaccccgaataggtattggctctgtgctgctactgaatctagtatccagatttggggatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77548" stop="78990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77848" g_stop="78690" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="844" r_length="844" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E729522" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77848" e_stop="78690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTT-GGGATTTGG</genome_strand>
        <mrna_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTACCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCCAGATTTGGGGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248623" ref_strand="+" ref_description="SGN-E248623 [cLEF-58-C10]">
      <seq>ctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaagaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77548" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77848" g_stop="78497" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E248623" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77848" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAAGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312480" ref_strand="+" ref_description="SGN-E312480 [cLEZ-20-D21]">
      <seq>ctttctctgccaccaaatgtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77548" stop="78662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77848" g_stop="78362" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E312480" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77848" e_stop="78362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCT</genome_strand>
        <mrna_strand>CTTTCTCTGCCACCAAATGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270937" ref_strand="+" ref_description="SGN-E270937 [cLEM-6-L14]">
      <seq>ctttctctgccaccaaaggtgatttcactgacggccgccaccgatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcatgaacaggattcacactctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77548" stop="78654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77848" g_stop="78354" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E270937" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77848" e_stop="78354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATT</genome_strand>
        <mrna_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCGATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCATGAACAGGATTCACACTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323791" ref_strand="+" ref_description="SGN-E323791 [cTOC-5-F22]">
      <seq>ctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtgcctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggcgagctccggttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77548" stop="78517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77848" g_stop="78217" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E323791" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77848" e_stop="78217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACAC</genome_strand>
        <mrna_strand>CTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTGCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGCGAGCTCCGGTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585410" ref_strand="+" ref_description="SGN-E585410 [67870]">
      <seq>attctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaacgatggagtcatattgctatgggatttggctgaaggaaagaaactgtactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78594" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E585410" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAA-GATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTC</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAACGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAGAAACTGTACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576387" ref_strand="+" ref_description="SGN-E576387 [59597]">
      <seq>attctctgccaccaaaggtgattcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggctgtgtctccagatggttcgctgtgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78530" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E576387" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGT-AAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCT</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGA-TTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCTGTGTCTCCAGATGGTTCGCTGTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210709" ref_strand="+" ref_description="SGN-E210709 [cLEC-68-J8]">
      <seq>tttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgagtccgttttagcccaaataatcttcagcccactattgtgtctggatcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcatgtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77549" stop="78807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78507" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E210709" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGT</genome_strand>
        <mrna_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGAGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGATCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCATGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440816" ref_strand="+" ref_description="SGN-E440816 [cSTA-27-K5]">
      <seq>attctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78497" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E440816" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487996" ref_strand="+" ref_description="SGN-E487996 [cSTE-27-M15]">
      <seq>attctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgttaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78497" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E487996" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTTAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450929" ref_strand="+" ref_description="SGN-E450929 [cSTS-10-L14]">
      <seq>attctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctctggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78472" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E450929" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGC</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCTGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470336" ref_strand="+" ref_description="SGN-E470336 [cSTB-17-H18]">
      <seq>attctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78458" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E470336" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTC</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470335" ref_strand="+" ref_description="SGN-E470335 [cSTB-17-H16]">
      <seq>attctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttaacccaaataatcttcaacccactattgtttctggttcatgggatcgcactgtgaaaatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78438" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E470335" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGA</genome_strand>
        <mrna_strand>ATTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAACCCAAATAATCTTCAACCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568122" ref_strand="+" ref_description="SGN-E568122 [12355]">
      <seq>attctctggcaccaaaggtgatttcactgacgggcggcaccaatctgacaaaatgtcgccaagaatcactagtcctccggcggcaccatgaaagcccacactgactgggtcactgctattgcanacccaattgacaactccgacatgattgtcacctcctccaggggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcggccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcgttcccgtggacaaagaccatcaaagctctgggaacacactcggtggagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttggtgtccggtttaaggcccaaataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78388" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E568122" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCG-CAAGAATCACTAGTCCTCC-GCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCA-GGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTC-GTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGC-TTCCCGT-GAC-AAGACCATC-AAGCTAT-GGAACACACTCGGTG-AGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT-GTGTCC-GTTTTA-GCCCAAATAATCT</genome_strand>
        <mrna_strand>ATTCTCTGGCACCAAAGGTGATTTCACTGACGGGCGGCACCAATCTGACAAAATGTCGCCAAGAATCACTAGTCCTCCGGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCANACCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCGTTCCCGTGGACAAAGACCATCAAAGCTCTGGGAACACACTCGGTGGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGGTGTCCGGTTTAAGGCCCAAATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566942" ref_strand="+" ref_description="SGN-E566942 [10990]">
      <seq>attctctggcaccaaaggtgatttcactgacgggcggcaccaatctgacaaaatgtcgcaagaatcactagtcctccggcgggaccatgaaagcccacactgactgggtcactgctattgcaacccaattgacaactccgacatgattgtcacctcctccaggggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78357" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E566942" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCC-GCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCA-GGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGG</genome_strand>
        <mrna_strand>ATTCTCTGGCACCAAAGGTGATTTCACTGACGGGCGGCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGGCGGGACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAA-CCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307740" ref_strand="+" ref_description="SGN-E307740 [cLEY-16-B15]">
      <seq>tttctctgccaccaaacgcgatttcactgacggccgtcaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcaccttctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgacgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77549" stop="78477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77849" g_stop="78177" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E307740" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77849" e_stop="78177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATC</genome_strand>
        <mrna_strand>TTTCTCTGCCACCAAACGCGATTTCACTGACGGCCGTCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTTCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGACGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480918" ref_strand="+" ref_description="SGN-E480918 [cSTD-15-F24]">
      <seq>ttctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77850" g_stop="78506" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E480918" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77850" e_stop="78506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTG</genome_strand>
        <mrna_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272567" ref_strand="+" ref_description="SGN-E272567 [cLEM-21-M4]">
      <seq>ttctctgccaccaaaagtgattgggcgggacggccgccaccaatctgataaaatgtcncaagaatcactantcctccgcggggccatgaaggcccacactaactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataaatccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatagccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaaactatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacagtcttattgggtttcttgtgtccgttttagcccaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77577" stop="78684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77850" g_stop="78384" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E272567" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77850" e_stop="78384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCCACCAAAGGTGATTTCAC-TGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATA</genome_strand>
        <mrna_strand>TTCTCTGCCACCAAAAGTGATTGGGCGGGACGGCCGCCACCAATCTGATAAAATGTCNCAAGAATCACTANTCCTCCGCGGGGCCATGAAGGCCCACACTAACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAATCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATAGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAACTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACAGTCTTATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371410" ref_strand="+" ref_description="SGN-E371410 [TUS-29-B22]">
      <seq>ttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcacattgtctctgcttaccgtgacaagacgcatcaagctatggaacacactcggtgagtgcaagttcacatttcacgaacaggattcacactctgattgggtttcttgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77850" g_stop="78368" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E371410" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77850" e_stop="78368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGAC-CATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTC</genome_strand>
        <mrna_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCACATTGTCTCTGCTTACCGTGACAAGACGCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTTCACATTTCACGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280347" ref_strand="+" ref_description="SGN-E280347 [cLER-1-A16]">
      <seq>ttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggaattacactctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77850" g_stop="78354" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E280347" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77850" e_stop="78354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATT</genome_strand>
        <mrna_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGAATTACACTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338450" ref_strand="+" ref_description="SGN-E338450 [cTOE-15-K16]">
      <seq>ttttctgccaccaaaggtgatttcactgacggccgtcaccaatctgataaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggagtacctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77550" stop="78653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77850" g_stop="78353" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E338450" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77850" e_stop="78353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGAT</genome_strand>
        <mrna_strand>TTTTCTGCCACCAAAGGTGATTTCACTGACGGCCGTCACCAATCTGATAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGAGTACCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484392" ref_strand="+" ref_description="SGN-E484392 [cSTE-13-M21]">
      <seq>ctctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77552" stop="78663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77852" g_stop="78363" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E484392" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77852" e_stop="78363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT</genome_strand>
        <mrna_strand>CTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326686" ref_strand="+" ref_description="SGN-E326686 [cTOC-17-L1]">
      <seq>tctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77553" stop="78768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77853" g_stop="78468" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E326686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77853" e_stop="78468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTC</genome_strand>
        <mrna_strand>TCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356111" ref_strand="+" ref_description="SGN-E356111 [cLHT-7-O3]">
      <seq>tctgccaccaaaggtgatttcactgacggccgacaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctgggctttgactaaagacggctcacaatacggtgtacctcgtcgccgtcttaccggacatggccatttcggtgaagatgtcaagttgtcgtctgacggcatgtttgcactctccggttcatgggacagcgagctccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77553" stop="78466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77853" g_stop="78166" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E356111" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77853" e_stop="78166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCG</genome_strand>
        <mrna_strand>TCTGCCACCAAAGGTGATTTCACTGACGGCCGACACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGGCTTTGACTAAAGACGGCTCACAATACGGTGTACCTCGTCGCCGTCTTACCGGACATGGCCATTTCGGTGAAGATGTCAAGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACAGCGAGCTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468847" ref_strand="+" ref_description="SGN-E468847 [cSTB-6-M6]">
      <seq>ctgccaccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgctttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77554" stop="78757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77854" g_stop="78457" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E468847" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77854" e_stop="78457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCT</genome_strand>
        <mrna_strand>CTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGCTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253564" ref_strand="+" ref_description="SGN-E253564 [cLEG-24-D16]">
      <seq>tgccaccaaaggtgatttcactgtcggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77555" stop="78676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77855" g_stop="78376" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E253564" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77855" e_stop="78376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAG</genome_strand>
        <mrna_strand>TGCCACCAAAGGTGATTTCACTGTCGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747707" ref_strand="+" ref_description="SGN-E747707 [GI|4589833]">
      <seq>gccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccttctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77556" stop="80831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77856" g_stop="78779" g_length="924"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="924" r_length="924" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80531" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1197" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E747707" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77856" e_stop="78779"/>
          <exon e_start="80259" e_stop="80531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTT</genome_strand>
        <mrna_strand>GCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCTTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327947" ref_strand="+" ref_description="SGN-E327947 [cTOC-22-N11]">
      <seq>gccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77556" stop="78808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77856" g_stop="78508" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E327947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77856" e_stop="78508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTC</genome_strand>
        <mrna_strand>GCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339414" ref_strand="+" ref_description="SGN-E339414 [cTOF-4-K10]">
      <seq>ccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77557" stop="78873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77857" g_stop="78573" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E339414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77857" e_stop="78573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTG</genome_strand>
        <mrna_strand>CCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407178" ref_strand="+" ref_description="SGN-E407178 [PPI-6-C16]">
      <seq>caccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctctggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcaggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctgaaagaaagaaactgtactctcttgatgctggctccattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77558" stop="78913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77858" g_stop="78613" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E407178" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77858" e_stop="78613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTAT</genome_strand>
        <mrna_strand>CACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCTGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCAGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAAAGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446244" ref_strand="+" ref_description="SGN-E446244 [cSTA-20-O6]">
      <seq>caccaaaggtgatttcactgacggccgccaccaatctgacgaaatgtcgcgggaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacagttcacattacggtgtccctcgccgccgccttaccggacacggacatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttgccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaagattcacactctgattgggtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77558" stop="78663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77858" g_stop="78363" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E446244" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77858" e_stop="78363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT</genome_strand>
        <mrna_strand>CACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACGAAATGTCGCGGGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACAGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGACATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTGCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAAGATTCACACTCTGATTGGGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280931" ref_strand="+" ref_description="SGN-E280931 [cLEL-6-P16](-)">
      <seq>tattgtgagccgtctttagtcaaagaccagacgatgatggacttatccctggaggaggtgacaatcatgtcggagttgtcaattggggttgcaatagcagtgacccagtcagtgtgggctttcagataaccgcggaggactagtgattcttgcgacattttctcagattggtggaggccgtcagtgaaatcacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78358" stop="77564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78058" g_stop="77859" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E280931" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78058" e_stop="77859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTGAGCCGTCTTTAGTCAAAGACCAGACGATGATGGACTTATCCCTGGAGGAGGTGACAATCATGTCGGAGTTGTCAATTGGGGTTGCAATAGCAGTGACCCAGTCAGTGTGGGCTTTCATGGTACCGCGGAGGACTAGTGATTCTTGCGACATTTTCTCAGATTGGTGGCGGCCGTCAGTGAAATCACCTTTGGT</genome_strand>
        <mrna_strand>TATTGTGAGCCGTCTTTAGTCAAAGACCAGACGATGATGGACTTATCCCTGGAGGAGGTGACAATCATGTCGGAGTTGTCAATTGGGGTTGCAATAGCAGTGACCCAGTCAGTGTGGGCTTTCAGATAACCGCGGAGGACTAGTGATTCTTGCGACATTTTCTCAGATTGGTGGAGGCCGTCAGTGAAATCACCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482597" ref_strand="+" ref_description="SGN-E482597 [cSTE-1-A23]">
      <seq>ccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77560" stop="78661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77860" g_stop="78361" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E482597" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77860" e_stop="78361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTC</genome_strand>
        <mrna_strand>CCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443762" ref_strand="+" ref_description="SGN-E443762 [cSTA-39-P7]">
      <seq>ccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77560" stop="78656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77860" g_stop="78356" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E443762" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77860" e_stop="78356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGG</genome_strand>
        <mrna_strand>CCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458090" ref_strand="+" ref_description="SGN-E458090 [cPRO-4-L23]">
      <seq>ccaaaggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacagaccatcaagctctggaacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77560" stop="78607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77860" g_stop="78307" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E458090" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77860" e_stop="78307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACT</genome_strand>
        <mrna_strand>CCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGAC-AGACCATCAAGCTCTGGAACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731426" ref_strand="+" ref_description="SGN-E731426 [LA27AD05]">
      <seq>caaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataagtattggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77561" stop="78951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77861" g_stop="78651" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E731426" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77861" e_stop="78651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCT</genome_strand>
        <mrna_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAAGTATTGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212273" ref_strand="+" ref_description="SGN-E212273 [cLEC-75-P21]">
      <seq>caaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactccccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgatgacaaccgtcagattgtctctgcttcacgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacatgattcacactctgattgtgtttcttgtgatcgttatagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggactctcaccaactgtaagctcaggtctactcttgcgagtcacagcgggtatgtgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77561" stop="78796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77861" g_stop="78496" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E212273" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77861" e_stop="78496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATAC</genome_strand>
        <mrna_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCCCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGATGACAACCGTCAGATTGTCTCTGCTTCACGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACATGATTCACACTCTGATTGTGTTTCTTGTGATCGTTATAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGACTCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGAGTCACAGCGGGTATGTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547916" ref_strand="+" ref_description="SGN-E547916 [TUS-56-E6]">
      <seq>caaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtccaaatctggaatctcaccaactggtagctcaggtctactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77561" stop="78771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77861" g_stop="78471" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E547916" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77861" e_stop="78471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTG</genome_strand>
        <mrna_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCCAAATCTGGAATCTCACCAACTGGTAGCTCAGGTCTACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537784" ref_strand="+" ref_description="SGN-E537784 [TUS-56-J1]">
      <seq>caaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctgggtcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77561" stop="78756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77861" g_stop="78456" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E537784" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77861" e_stop="78456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGC</genome_strand>
        <mrna_strand>CAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGGTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276067" ref_strand="+" ref_description="SGN-E276067 [cLEN-12-M20]">
      <seq>aaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaagtctactcttgcgggtcacagcgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78497" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E276067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAAGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314582" ref_strand="+" ref_description="SGN-E314582 [cTOA-20-E18]">
      <seq>aaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78470" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E314582" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTT</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCC-AATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253603" ref_strand="+" ref_description="SGN-E253603 [cLEG-32-G13]">
      <seq>aaaggtgatttcactgacggccgtcaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78456" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E253603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGC</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGTCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335206" ref_strand="+" ref_description="SGN-E335206 [cTOE-1-A21]">
      <seq>aaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78422" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E335206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGC</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329164" ref_strand="+" ref_description="SGN-E329164 [cTOD-2-K20]">
      <seq>aaaggtgatttcactgacggccgccaccaagctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaagaacaggattcacactctgattgggtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78363" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E329164" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGCCACCAAGCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAAGAACAGGATTCACACTCTGATTGGGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245302" ref_strand="+" ref_description="SGN-E245302 [cLEF-44-B15]">
      <seq>aaaggtgatttcactgacggccgccaccaatctgagaaaagggcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78245" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E245302" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCT</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAAGGGCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256259" ref_strand="+" ref_description="SGN-E256259 [cLEG-37-N21]">
      <seq>aaaggtgatttcactgacggccgccaccaatctgagaaagtgtcggaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77562" stop="78520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77862" g_stop="78220" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E256259" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77862" e_stop="78220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAA</genome_strand>
        <mrna_strand>AAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAGTGTCGGAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558453" ref_strand="+" ref_description="SGN-E558453 [17796]">
      <seq>ggtgatttcacntgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctgaaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77565" stop="78881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77865" g_stop="78581" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E558453" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77865" e_stop="78581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTTCAC-TGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAG</genome_strand>
        <mrna_strand>GGTGATTTCACNTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446356" ref_strand="+" ref_description="SGN-E446356 [cSTA-20-H12]">
      <seq>ggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77565" stop="78607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77865" g_stop="78307" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E446356" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77865" e_stop="78307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACT</genome_strand>
        <mrna_strand>GGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470663" ref_strand="+" ref_description="SGN-E470663 [cSTB-20-E11]">
      <seq>ggtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctctggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77565" stop="78562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77865" g_stop="78262" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E470663" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77865" e_stop="78262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGAT</genome_strand>
        <mrna_strand>GGTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCTGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567105" ref_strand="+" ref_description="SGN-E567105 [11178]">
      <seq>gtgatttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaacatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgcggtatgtgaatactgtggctgttgtctccagatggttcgttgtgtgctagcggagggaaaagatggagtcatattgctatgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77566" stop="78867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77866" g_stop="78567" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E567105" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77866" e_stop="78567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAA-ATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCG-GGTATGTGAATACTGTGGCCG-TGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGG-AAAGATGGTGTCATATTGCTATGGGATT</genome_strand>
        <mrna_strand>GTGATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAACATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGCGGTATGTGAATACTGTGGCTGTTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAAGATGGAGTCATATTGCTATGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567745" ref_strand="+" ref_description="SGN-E567745 [11919]">
      <seq>gtgatttcactgacggccgcaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgagaactccgacatgattgtcacctcctccaggggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactggtagctccggtccactcttggcgggacacagtgggtatgtgaatactggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77566" stop="78800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77866" g_stop="78501" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E567745" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77866" e_stop="78501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCA-GGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTT-GCGGGTCACAGCGGGTATGTGAATACTGTGG</genome_strand>
        <mrna_strand>GTGATTTCACTGACGGCCG-CACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGAGAACTCCGACATGATTGTCACCTCCTCCAGGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGGTAGCTCCGGTCCACTCTTGGCGGGACACAGTGGGTATGTGAATACTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439045" ref_strand="+" ref_description="SGN-E439045 [cSTA-10-P13]">
      <seq>gtgatttcactgacggccgccaccaatctgacgaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77566" stop="78661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77866" g_stop="78361" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E439045" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77866" e_stop="78361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTC</genome_strand>
        <mrna_strand>GTGATTTCACTGACGGCCGCCACCAATCTGACGAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576097" ref_strand="+" ref_description="SGN-E576097 [59261]">
      <seq>atttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77569" stop="78812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77869" g_stop="78512" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E576097" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77869" e_stop="78512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCA</genome_strand>
        <mrna_strand>ATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483343" ref_strand="+" ref_description="SGN-E483343 [cSTE-9-A23]">
      <seq>atttcactgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgttaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77569" stop="78808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77869" g_stop="78508" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E483343" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77869" e_stop="78508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTC</genome_strand>
        <mrna_strand>ATTTCACTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTTAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253979" ref_strand="+" ref_description="SGN-E253979 [cLEG-28-P8]">
      <seq>ttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77571" stop="78803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77871" g_stop="78503" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E253979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77871" e_stop="78503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCC</genome_strand>
        <mrna_strand>TTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454396" ref_strand="+" ref_description="SGN-E454396 [cSTS-23-K19]">
      <seq>ctgacggccgccaccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggctcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcatgtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgatgtgtgctagcggatggaaagatggagtcatattgctatgggatttggctgaacgaaagaaactgtactctcttgatgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77575" stop="78905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77875" g_stop="78605" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E454396" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77875" e_stop="78605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGC</genome_strand>
        <mrna_strand>CTGACGGCCGCCACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGCTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCATGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGATGTGTGCTAGCGGATGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAACGAAAGAAACTGTACTCTCTTGATGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268886" ref_strand="+" ref_description="SGN-E268886 [cLEM-4-H3]">
      <seq>ctgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcatgaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77575" stop="78726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77875" g_stop="78426" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E268886" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77875" e_stop="78426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTG</genome_strand>
        <mrna_strand>CTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCATGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417944" ref_strand="+" ref_description="SGN-E417944 [STM-26-O20]">
      <seq>cggccgccaccaatcttatcaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacaatacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctctgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgttaaaatctggaatcttaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77579" stop="78750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77879" g_stop="78450" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E417944" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77879" e_stop="78450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACT</genome_strand>
        <mrna_strand>CGGCCGCCACCAATCTTA-TCAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTTAAAATCTGGAATCTTACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570080" ref_strand="+" ref_description="SGN-E570080 [14607]">
      <seq>caccaatctgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77586" stop="78538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77886" g_stop="78239" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E570080" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77886" e_stop="78239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCA</genome_strand>
        <mrna_strand>CACCAATCTGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558572" ref_strand="+" ref_description="SGN-E558572 [17933]">
      <seq>tgacaaaatgtcgcaagaatcactagtcctccgcggcaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtnaagctcaggtccactcttgcgcggacacaggtgggtatgtgaatactgtggctgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77594" stop="78808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77894" g_stop="78509" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E558572" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77894" e_stop="78509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGT-AAGCTCAGGTCTACTCTTGCG-GGTCACA-GCGGGTATGTGAATACTGTGGCCGTGTCC</genome_strand>
        <mrna_strand>TGACAAAATGTCGCAAGAATCACTAGTCCTCCGCGGCACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTNAAGCTCAGGTCCACTCTTGCGCGGACACAGGTGGGTATGTGAATACTGTGGCTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281045" ref_strand="+" ref_description="SGN-E281045 [cLER-7-J8]">
      <seq>tgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcggctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77594" stop="78432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77894" g_stop="78132" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E281045" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77894" e_stop="78132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGT</genome_strand>
        <mrna_strand>TGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGGCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338625" ref_strand="+" ref_description="SGN-E338625 [cTOE-15-D3]">
      <seq>aaatgtcgcacgaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctacggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcatcgtttcgttggacacactaaagatcgcctctctgttgcattctctgttgacaaccgtcagattgtctctgctatgcgcgacaagaccatcaagctatggaacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77599" stop="78607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77899" g_stop="78307" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E338625" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77899" e_stop="78307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACT</genome_strand>
        <mrna_strand>AAATGTCGCACGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTACGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCATCGTTTCGTTGGACACACTAAAGATCGCCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTATGCGCGACAAGACCATCAAGCTATGGAACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264040" ref_strand="+" ref_description="SGN-E264040 [cLEG-64-N8]">
      <seq>caagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77607" stop="78977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77907" g_stop="78677" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E264040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77907" e_stop="78677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAG</genome_strand>
        <mrna_strand>CAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263407" ref_strand="+" ref_description="SGN-E263407 [cLEG-62-J12]">
      <seq>caagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaaagggagaaactgtactctcttgatgctggctccattatcacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77607" stop="78975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77907" g_stop="78675" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E263407" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77907" e_stop="78675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCA</genome_strand>
        <mrna_strand>CAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAAGGGAGAAACTGTACTCTCTTGATGCTGGCTCCATTAT-CACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257806" ref_strand="+" ref_description="SGN-E257806 [cLEG-39-M11]">
      <seq>gaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77610" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77910" g_stop="78497" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E257806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77910" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>GAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339747" ref_strand="+" ref_description="SGN-E339747 [cTOE-16-H11]">
      <seq>atgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77634" stop="78388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77934" g_stop="78088" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E339747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77934" e_stop="78088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACA</genome_strand>
        <mrna_strand>ATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710572" ref_strand="+" ref_description="SGN-E710572 [FA55DD02]">
      <seq>ccatctactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggcanccgctctgtgctgctactgaatctagtatcaagatttgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77642" stop="78987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77941" g_stop="78687" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E710572" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77941" e_stop="78687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAC-ACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATT</genome_strand>
        <mrna_strand>CCATCTACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGCANCCGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558407" ref_strand="+" ref_description="SGN-E558407 [17742]">
      <seq>ggcacgaggaactccgacatgattgtcacctcctccagggataagtcatcatcgtctggtctttgactaaagacggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccngttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagnccactattgtttctggttcatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77682" stop="78719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77982" g_stop="78419" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="447" r_length="438" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E558407" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77982" e_stop="78419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCT-CTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGAT</genome_strand>
        <mrna_strand>AACTCCGACATGATTGTCACCTCCTCCAGGGATAAGT-CATCATCGTCTGGTCTTTGACTAAAGACGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCNGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGNCCACTATTGTTTCTGGTTCATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698777" ref_strand="+" ref_description="SGN-E698777 [FA07CC05]">
      <seq>ccgttttataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77713" stop="79074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78006" g_stop="78774" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E698777" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78006" e_stop="78774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAA</genome_strand>
        <mrna_strand>CCGTTTTATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702624" ref_strand="+" ref_description="SGN-E702624 [FA19BA02]">
      <seq>gtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttanagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattaggnaaagagaggatcgacgcgagccatttgggcaatactgaattaaaagtcttttagatttgaagattctccgtggttttcattattatgangcctcaactggttcaattttggatttttattttgntacatggaatatcctgcctgctataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77717" stop="80814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78017" g_stop="78779" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80513" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="1017" r_length="254" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1018" polyA_stop="1029"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E702624" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1018</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78017" e_stop="78779"/>
          <exon e_start="80259" e_stop="80513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAA</genome_strand>
        <mrna_strand>GTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTANAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGNAAAGAGAGGATCGACGCGAGCCATTTGGGCAATACTGAATTAAAAGTCTTTTAGA-TTTGAAGATTCTCCGTGGTTTTCATTATTATGANGCCTCAACTGGTTCAATTTTGGATTTTTATTTTGNTACATGGAATATCCTGCCTGCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580745" ref_strand="+" ref_description="SGN-E580745 [5988]">
      <seq>gtctggtctttgactaaagacggttcacaatacggtgtccctcgccgtcgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77727" stop="78741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78027" g_stop="78441" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E580745" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78027" e_stop="78441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATC</genome_strand>
        <mrna_strand>GTCTGGTCTTTGACTAAAGACGGTTCACAATACGGTGTCCCTCGCCGTCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249354" ref_strand="+" ref_description="SGN-E249354 [cLEF-50-G22]">
      <seq>ttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77736" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78036" g_stop="78497" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E249354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78036" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>TTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705804" ref_strand="+" ref_description="SGN-E705804 [FA28AG06]">
      <seq>agacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77744" stop="80660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78044" g_stop="78779" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80360" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="838" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E705804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78044" e_stop="78779"/>
          <exon e_start="80259" e_stop="80360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAG</genome_strand>
        <mrna_strand>AGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437733" ref_strand="+" ref_description="SGN-E437733 [cSTA-4-H24]">
      <seq>tggttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcatgtccactcttgcgggacacagtgggtatgtgaatactgtggctgtgtctccagatggttcgttgtgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77748" stop="78830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78047" g_stop="78530" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E437733" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78047" e_stop="78530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCT</genome_strand>
        <mrna_strand>TGGTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCATGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCTGTGTCTCCAGATGGTTCGTTGTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437726" ref_strand="+" ref_description="SGN-E437726 [cSTA-4-F24]">
      <seq>gttcacattacggtgtccctcgccgccgccttaccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaggaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77749" stop="78797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78049" g_stop="78497" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E437726" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78049" e_stop="78497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACT</genome_strand>
        <mrna_strand>GTTCACATTACGGTGTCCCTCGCCGCCGCCTTACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAGGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339545" ref_strand="+" ref_description="SGN-E339545 [cTOE-16-G4]">
      <seq>ggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77760" stop="78795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78060" g_stop="78495" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E339545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78060" e_stop="78495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATA</genome_strand>
        <mrna_strand>GGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314743" ref_strand="+" ref_description="SGN-E314743 [cTOA-20-G6]">
      <seq>tgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagnactgtactctcttgatgctgggctcattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77762" stop="78970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78062" g_stop="78670" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E314743" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78062" e_stop="78670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAG</genome_strand>
        <mrna_strand>TGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAG-NACTGTACTCTCTTGATGCTGGGCTCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448729" ref_strand="+" ref_description="SGN-E448729 [cSTS-4-E10]">
      <seq>taccggacacggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaaccactgctcgtcgtttcgttggacacactaaagatgttctctccgttgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctgaaggaaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77780" stop="79004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78080" g_stop="78704" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E448729" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78080" e_stop="78704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATC</genome_strand>
        <mrna_strand>TACCGGACACGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACCACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCCGTTGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322974" ref_strand="+" ref_description="SGN-E322974 [cTOB-30-H5]">
      <seq>tgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctnacgattccaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttgggggaattggacgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77858" stop="80656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78158" g_stop="78779" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80356" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="720" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E322974" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78158" e_stop="78779"/>
          <exon e_start="80259" e_stop="80356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTT-GGGGAATTGGACGTTA</genome_strand>
        <mrna_strand>TGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTNACGATTCC-AAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGGAATTGGACGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323039" ref_strand="+" ref_description="SGN-E323039 [cTOB-28-G11]">
      <seq>tgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagaagcaaagcatcgtggttgatcttttaagtgatctgaaaacagagagtgaaatgttcngaactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77858" stop="79059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78158" g_stop="78759" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E323039" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78158" e_stop="78759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTG</genome_strand>
        <mrna_strand>TGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAAGCAAAGCATCGTGGTTGATCTTTTAAGTGATCTGAAAACAGAGAGTGAAATGTTCNGAACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410086" ref_strand="+" ref_description="SGN-E410086 [PPI-16-C3]">
      <seq>tgctttctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctgaaggaaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaagaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77936" stop="80620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78236" g_stop="78779" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80320" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="606" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E410086" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78236" e_stop="78779"/>
          <exon e_start="80259" e_stop="80320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATAC</genome_strand>
        <mrna_strand>TGCTTTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695819" ref_strand="+" ref_description="SGN-E695819 [LH_Ea07I09](-)">
      <seq>ctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtgaaaatctggaatctcaccaactgtaagctcaggtccactctcgcgggacacagtgggtatgtaaatactgtggccgtgtctccagatggttccttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctttgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcattgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgggagccatttggccaatactgaattaaaagtcttttagatttcgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggattcttattttgttacattggaaatgggtcttgctataaatctaagttgtttgctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77944" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78244" g_stop="78779" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80527" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="805" r_length="269" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="808" polyA_stop="823"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E695819" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78244" e_stop="78779"/>
          <exon e_start="80259" e_stop="80527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTT</genome_strand>
        <mrna_strand>CTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCCACTCTCGCGGGACACAGTGGGTATGTAAATACTGTGGCCGTGTCTCCAGATGGTTCCTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTTTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATTGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGGGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTCGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTCTTATTTTGTTACATTGGAAATGGGTCTTGCTATAAATCTAAGTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697058" ref_strand="+" ref_description="SGN-E697058 [LH_Ea10L24](-)">
      <seq>tcccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtgaaaatctggaatctcaccaactgtaagctcaggtccactctcgcgggacacagtgggtatgtaaatactgtggccgtgtctccagatggttccttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctttgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcattgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgggagccatttggccaatactgaattaaaagtcttttagatttcgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggattcttattttgttacattggatatctgtcttgctataaatctaagttgtttgctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77973" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78273" g_stop="78779" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80527" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="776" r_length="269" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="795"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E697058" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78273" e_stop="78779"/>
          <exon e_start="80259" e_stop="80527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTT</genome_strand>
        <mrna_strand>TCCCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCCACTCTCGCGGGACACAGTGGGTATGTAAATACTGTGGCCGTGTCTCCAGATGGTTCCTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTTTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATTGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGGGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTCGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTCTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696307" ref_strand="+" ref_description="SGN-E696307 [LH_Ea08M17](-)">
      <seq>ccgtgacaagaccatcaagctctggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtgaaaatctggaatctcaccaactgtaagctcaggtccactctcgcgggacacagtgggtatgtaaatactgtggccgtgtctccagatggttccttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctttgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcattgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgggagccatttggccaatactgaattaaaagtcttttagatttcgaagattctccgtgtttttcattattatgaggcctcaactgtttcaaggttggattcttattttgttacattggatatctgtcttaaaagaaatctaagttgttttgcttatcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77975" stop="80839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78275" g_stop="78779" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80538" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="784" r_length="279" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="803"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E696307" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78275" e_stop="78779"/>
          <exon e_start="80259" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>CCGTGACAAGACCATCAAGCTCTGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCCACTCTCGCGGGACACAGTGGGTATGTAAATACTGTGGCCGTGTCTCCAGATGGTTCCTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTTTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATTGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGGGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTCGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAAGGTTGGATTCTTATTTTGTTACATTGGATATCTGTCTTAAAAGAAATCTAAGTTGTTTTGCTT-ATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566545" ref_strand="+" ref_description="SGN-E566545 [4984]">
      <seq>catcaagctctggaacacactcngtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttggtgtccgttttagcccaaataatcttcagcccactattgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctgaaggaaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaagaccaaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77987" stop="80633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78287" g_stop="78779" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80333" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="570" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E566545" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78287" e_stop="78779"/>
          <exon e_start="80259" e_stop="80333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTT-GTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACC-AAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATT</genome_strand>
        <mrna_strand>CATCAAGCTCTGGAACACACTCNGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAGACCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305527" ref_strand="+" ref_description="SGN-E305527 [cLEX-14-A5]">
      <seq>acactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78003" stop="80713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78303" g_stop="78779" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80413" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="632" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E305527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78303" e_stop="78779"/>
          <exon e_start="80259" e_stop="80413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTT</genome_strand>
        <mrna_strand>ACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371792" ref_strand="+" ref_description="SGN-E371792 [TUS-30-A9](-)">
      <seq>caagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatttaagttgttttgcttaatcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78017" stop="80839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78317" g_stop="78779" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80538" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="743" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="753"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E371792" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78317" e_stop="78779"/>
          <exon e_start="80259" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>CAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATTTAAGTTGTTTTGCTTAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265483" ref_strand="+" ref_description="SGN-E265483 [cLEI-9-P20]">
      <seq>caagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccantttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78017" stop="80658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78317" g_stop="78779" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80358" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="563" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E265483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78317" e_stop="78779"/>
          <exon e_start="80259" e_stop="80358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATT</genome_strand>
        <mrna_strand>CAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCANTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733884" ref_strand="+" ref_description="SGN-E733884 [LB11AH01]">
      <seq>cgatacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78033" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78331" g_stop="78779" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80532" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="723" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="741"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E733884" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78331" e_stop="78779"/>
          <exon e_start="80259" e_stop="80532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTA</genome_strand>
        <mrna_strand>CGATACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693218" ref_strand="+" ref_description="SGN-E693218 [LH_Ea10L24]">
      <seq>atgcttttgctctccggatcccaaatcttgaaactacagtcagtagcagcacggagccaatacctattcgggctaaaacaaagggtgtggataatggacccagcatcaacagagtacagcttcttcccttcagccaaatcccatagcaatatgacaccatctttccctccgctagcacacaaggaaccatctggagacacggccacatgatttacatacccactgtgtcccgcgagagtggacctgagcttacagttggggaaattccctattttcacagggcgatcccatgaaccagacacaatagtgggctcaacattatttgggctaaaacggacacaagaaacccaatcagagtgtgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79003" stop="78039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78703" g_stop="78339" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-E693218" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78703" e_stop="78339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTTTGCTCTCCAAATCCCAAATCTTGATACTAGATTCAGTAGCAGCACAGAGCCAATACCTATTCGGGCTAAAACAGAGGGTGTGGATAATGGAGCCAGCATCAAGAGAGTACAGTTTCTTCCCTTCAGCCAAATCCCATAGCAATATGACACCATCTTTCCCTCCGCTAGCACACAACGAACCATCTGGGGACACGGCCACAGTATTCACATACCCGCTGTGACCCGCAAGAGTAGACCTGAGCTTACAGTTGGTGAGATTCCAGATTTTGACAGTGCGATCCCATGAACCAGACACAATAGTGGGCTGAAGATTATTTGGGCTAAAACGGACACAAGAAACCCAATCAGAGTGTGAATC</genome_strand>
        <mrna_strand>ATGCTTTTGCTCTCCGGATCCCAAATCTTGAAACTACAGTCAGTAGCAGCACGGAGCCAATACCTATTCGGGCTAAAACAAAGGGTGTGGATAATGGACCCAGCATCAACAGAGTACAGCTTCTTCCCTTCAGCCAAATCCCATAGCAATATGACACCATCTTTCCCTCCGCTAGCACACAAGGAACCATCTGGAGACACGGCCACATGATTTACATACCCACTGTGTCCCGCGAGAGTGGACCTGAGCTTACAGTTGGGGAAATTCCCTATTTTCACAGGGCGATCCCATGAACCAGACACAATAGTGGGCTCAACATTATTTGGGCTAAAACGGACACAAGAAACCCAATCAGAGTGTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280995" ref_strand="+" ref_description="SGN-E280995 [cLER-7-B11]">
      <seq>ttcagcccactattgggtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccactttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78088" stop="80644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78388" g_stop="78779" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80344" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="478" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E280995" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78388" e_stop="78779"/>
          <exon e_start="80259" e_stop="80344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGG</genome_strand>
        <mrna_strand>TTCAGCCCACTATTGGGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCACTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610032" ref_strand="+" ref_description="SGN-E610032 [57184]">
      <seq>tgtttctggttcatgggatcgcactgtgaaaatctggaatcttaccaactgtaagctcaggtccactcttgcgggacacagtgggtatgtgaatactgtggccgtgtctccagatggttcgttgtgtgctagcggagggaaagatggagtcatattgctatgggatttggctgaaggaaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaagaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattgggcgttattagggaagaagaggatccaggcgagccatttggccatactgagttaaagtcatttaaatttcgaagattctccctgtgtttcattgttatgaggcctcaactgtttcaattttggattcttatttagtgcgtatttgttacattggatatctgtcttattataaatcttaagtggttgtttaaaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78101" stop="80827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78401" g_stop="78779" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80485" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="604" r_length="225" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E610032" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78401" e_stop="78779"/>
          <exon e_start="80259" e_stop="80485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTT</genome_strand>
        <mrna_strand>TGTTTCTGGTTCATGGGATCGCACTGTGAAAATCTGGAATCTTACCAACTGTAAGCTCAGGTCCACTCTTGCGGGACACAGTGGGTATGTGAATACTGTGGCCGTGTCTCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGGCGTTATTAGGGAAGAAGAGGATCCAGGCGAGCCATTTGGCC-ATACTGAGTT-AAAGTCATTTAAATTTCGAAGATTCTCCCTGTGTTTCATTGTTATGAGGCCTCAACTGTTTCAATTTTGGATTCTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371409" ref_strand="+" ref_description="SGN-E371409 [TUS-29-B22](-)">
      <seq>ttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccaaatggttcgttgtgtgctaacggagggaaaaatggtgtcatattgctatgggatttggctgaaaggaaaaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctttgtgctgctactgaatttagtatcaaaatttgggatttggaaagcaaaagcatcgtggttgattttaaagttgatttgaaacaaaaaagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgccccagtttgagctggagtgctgatggaagcacacttttcagtggctatacaaatggtttgattaaagtttggggaattggacgttattagggaaaaaaaggatcgacccgagccctttggccaatactgaattaaaagttttttaaattttgaaaattttccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatttaagttgttttgcttaattttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78110" stop="80838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78410" g_stop="78779" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80538" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="650" r_length="280" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="686"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E371409" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78410" e_stop="78779"/>
          <exon e_start="80259" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>TTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAAATGGTTCGTTGTGTGCTAACGGAGGGAAAAATGGTGTCATATTGCTATGGGATTTGGCTGAAAGGAAAAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTTTGTGCTGCTACTGAATTTAGTATCAAAATTTGGGATTTGGAAAGCAAAAGCATCGTGGTTGATTTTAAAGTTGATTTGAAACAAAAAAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCCCCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAAATGGTTTGATTAAAGTTTGGGGAATTGGACGTTATTAGGGAAAAAAAGGATCGACCCGAGCCCTTTGGCCAATACTGAATTAAAAGTTTTTTAAATTTTGAAAATTTTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATTTAAGTTGTTTTGCTTAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269943" ref_strand="+" ref_description="SGN-E269943 [cLEM-7-O11]">
      <seq>ttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78110" stop="80806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78410" g_stop="78779" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80506" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="618" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E269943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78410" e_stop="78779"/>
          <exon e_start="80259" e_stop="80506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTT</genome_strand>
        <mrna_strand>TTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537577" ref_strand="+" ref_description="SGN-E537577 [TUS-56-E2](-)">
      <seq>gaatctcaccaactgtaagctcaggtgtactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgccggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagtgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgttaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78137" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78437" g_stop="78779" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80527" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="611" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="631"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E537577" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78437" e_stop="78779"/>
          <exon e_start="80259" e_stop="80527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTT</genome_strand>
        <mrna_strand>GAATCTCACCAACTGTAAGCTCAGGTGTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCCGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAG-TGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352761" ref_strand="+" ref_description="SGN-E352761 [cTOS-11-J2]">
      <seq>caactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctantaatctaagttgttttgcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78146" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78446" g_stop="78779" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80540" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="616" r_length="282" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E352761" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78446" e_stop="78779"/>
          <exon e_start="80259" e_stop="80540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCAT</genome_strand>
        <mrna_strand>CAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTANTAATCTAAGTTGTTTTGCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354087" ref_strand="+" ref_description="SGN-E354087 [cTOS-16-D5]">
      <seq>caactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78146" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78446" g_stop="78779" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80536" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="612" r_length="278" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E354087" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78446" e_stop="78779"/>
          <exon e_start="80259" e_stop="80536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCT</genome_strand>
        <mrna_strand>CAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200797" ref_strand="+" ref_description="SGN-E200797 [cLEC-9-D17]">
      <seq>tgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78150" stop="80592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78450" g_stop="78779" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80292" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="364" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E200797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78450" e_stop="78779"/>
          <exon e_start="80259" e_stop="80292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTG</genome_strand>
        <mrna_strand>TGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228448" ref_strand="+" ref_description="SGN-E228448 [cLED-3-K15]">
      <seq>tgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78197" stop="80829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78497" g_stop="78779" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80529" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="554" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E228448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78497" e_stop="78779"/>
          <exon e_start="80259" e_stop="80529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGC</genome_strand>
        <mrna_strand>TGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353722" ref_strand="+" ref_description="SGN-E353722 [cTOS-10-O21]">
      <seq>tggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaaggtgttttgcttaatcttcatgtattggagtttcttgcttgttgtttacctccatcttccttaaatcatccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78199" stop="80889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78499" g_stop="78779" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80598" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="621" r_length="340" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E353722" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78499" e_stop="78779"/>
          <exon e_start="80259" e_stop="80598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTACCTCCATCTTCATTAAATCATCACTTCATAT</genome_strand>
        <mrna_strand>TGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGGTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTACCTCCATCTTCCTTAAATCATCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553384" ref_strand="+" ref_description="SGN-E553384 [cTSB-5-K4]">
      <seq>gaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78239" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78539" g_stop="78779" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80532" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="515" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="535"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E553384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78539" e_stop="78779"/>
          <exon e_start="80259" e_stop="80532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTA</genome_strand>
        <mrna_strand>GAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417529" ref_strand="-" ref_description="SGN-E417529 [STM-25-J1]">
      <seq>aagatggagtcatattgctatgggatttggctgaaggaaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattgggcgttattagggaagaagaggatccagggaagccattggccatactgaattaaagtcgtttaaatttcgaagattctccctgtgtttcattgttacgaggcctcaactgtttcaattttggattcttatttagtgcgtatttgttacatggaaaaaaaggatnn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78241" stop="80787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78541" g_stop="78779" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80485" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="463" r_length="224" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E417529" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78541" e_stop="78779"/>
          <exon e_start="80259" e_stop="80485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTT</genome_strand>
        <mrna_strand>AAGATGGAGTCATATTGCTATGGGATTTGGCTGAAGGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGGCGTTATTAGGGAAGAAGAGGATCCAGGGAAGCCA-TTGGCC-ATACTGAATT-AAAGTCGTTTAAATTTCGAAGATTCTCCCTGTGTTTCATTGTTACGAGGCCTCAACTGTTTCAATTTTGGATTCTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462463" ref_strand="+" ref_description="SGN-E462463 [cPRO-11-D4]">
      <seq>gaaggaaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaagaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattgggcgttattanggaagaagaggatccaggggagccatttggccatactgagttaaagtcatttaaatttcgaagattctccctgtgtttcattgttatgaagcctcaactgtttcaattttggattcttatttagtgcgtatttgttacattggatatctggcttattataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78273" stop="80814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78573" g_stop="78779" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80485" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="432" r_length="225" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E462463" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78573" e_stop="78779"/>
          <exon e_start="80259" e_stop="80485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTT</genome_strand>
        <mrna_strand>GAAGGAAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGGCGTTATTANGGAAGAAGAGGATCCAGGGGAGCCATTTGGCC-ATACTGAGTT-AAAGTCATTTAAATTTCGAAGATTCTCCCTGTGTTTCATTGTTATGAAGCCTCAACTGTTTCAATTTTGGATTCTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564603" ref_strand="-" ref_description="SGN-E564603 [2852]">
      <seq>gctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcgtcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaagaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattgggcgttattagggaagaagaggatccaggggagccatttggccatactgagttaaagtcatttaaatttcgaagattctccctgtgtttcattgttatgaggcctcaactgtttcaattttggattcttatttagtgcgtatttgttacattggatatctgtcttattataaatcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78300" stop="80820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78600" g_stop="78779" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80485" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="405" r_length="225" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E564603" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564603" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78600" e_stop="78779"/>
          <exon e_start="80259" e_stop="80485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTT</genome_strand>
        <mrna_strand>GCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCGTCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGGCGTTATTAGGGAAGAAGAGGATCCAGGGGAGCCATTTGGCC-ATACTGAGTT-AAAGTCATTTAAATTTCGAAGATTCTCCCTGTGTTTCATTGTTATGAGGCCTCAACTGTTTCAATTTTGGATTCTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222961" ref_strand="+" ref_description="SGN-E222961 [cLEL-14-O10](-)">
      <seq>tccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaatcttcatgtattggagtttcttgcttgttgtttacctccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78306" stop="80873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78606" g_stop="78779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80572" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="488" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="509"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E222961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78606" e_stop="78779"/>
          <exon e_start="80259" e_stop="80572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTACCTCC</genome_strand>
        <mrna_strand>TCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTACCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251911" ref_strand="-" ref_description="SGN-E251911 [cLEG-14-G23]">
      <seq>ccattatccacaccctctgttttagcccgaataggtattggctatgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatagtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatattctgcaccagtttgagctggagtgctgatgtaagcacacttttcagtggctattcagatggtctgattagagtttggggaattggacgttattagggaagaagaggattgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattgtccgtgtttttcattattatgaggcctctactgtttcaattttggattttaattttgccacattgcccatttgtcttgctataaataaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78307" stop="80794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78607" g_stop="78779" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80521" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="436" r_length="263" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E251911" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251911" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78607" e_stop="78779"/>
          <exon e_start="80259" e_stop="80521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGT</genome_strand>
        <mrna_strand>CCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTATGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATAGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATTCTGCACCAGTTTGAGCTGGAGTGCTGATGTAAGCACACTTTTCAGTGGCTATTCAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATTGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTGTCCGTGTTTTTCATTATTATGAGGCCTCTACTGTTTCAATTTTGGATTTTAATTTTGCCACATTGCCCATTTGTCTTGCTATAAATAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222216" ref_strand="+" ref_description="SGN-E222216 [cLEL-16-L4](-)">
      <seq>cattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcaaaaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78308" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78608" g_stop="78779" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80527" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="441" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="463"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E222216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78608" e_stop="78779"/>
          <exon e_start="80259" e_stop="80527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTT</genome_strand>
        <mrna_strand>CATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537584" ref_strand="+" ref_description="SGN-E537584 [TUS-56-E6](-)">
      <seq>ataggtattggctctgtgctgctcctgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagtgatctgaaccaagagagtgaaatgttcggaactgttgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78337" stop="80815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78637" g_stop="78779" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80515" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="399" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E537584" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78637" e_stop="78779"/>
          <exon e_start="80259" e_stop="80515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAAT</genome_strand>
        <mrna_strand>ATAGGTATTGGCTCTGTGCTGCTCCTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAG-TGATCTGAACCAAGAGAGTGAAATGTTCGGAACTGTTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223486" ref_strand="+" ref_description="SGN-E223486 [cLEL-14-O10](-)">
      <seq>aatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaatcttcatgtattggagtttcttgcttgttgtttccctccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78443" stop="80873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78743" g_stop="78779" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80572" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="351" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="372"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E223486" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78743" e_stop="78779"/>
          <exon e_start="80259" e_stop="80572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTACCTCC</genome_strand>
        <mrna_strand>AATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537781" ref_strand="+" ref_description="SGN-E537781 [TUS-56-J1](-)">
      <seq>accgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatataagttgttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78462" stop="80831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78762" g_stop="78779" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80531" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="291" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E537781" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78762" e_stop="78779"/>
          <exon e_start="80259" e_stop="80531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTT</genome_strand>
        <mrna_strand>ACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATATAAGTTGTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220406" ref_strand="+" ref_description="SGN-E220406 [cLEL-12-P7](-)">
      <seq>ggcaccagagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcatgctatacatctaagttgttttgcttaatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80076" stop="80839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80373" g_stop="80538" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="167" polyA_stop="183"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E220406" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80373" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>GGCACCAGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCATGCTATACATCTAAGTTGTTTTGCTTAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218332" ref_strand="+" ref_description="SGN-E218332 [cLEL-18-A5](-)">
      <seq>ggcaccagagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80076" stop="80839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80373" g_stop="80538" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="167" polyA_stop="183"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E218332" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80373" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>GGCACCAGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218689" ref_strand="+" ref_description="SGN-E218689 [cLEL-18-A5](-)">
      <seq>ggcaccagagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80076" stop="80839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80373" g_stop="80538" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="167" polyA_stop="183"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E218689" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80373" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>GGCACCAGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245448" ref_strand="+" ref_description="SGN-E245448 [cLEF-43-C23]">
      <seq>aggaattcggcacgagcaatttattgtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgagccccatggatattgaagaggacatcaaggcgctgcagcttgattcatctgaagatactgtgttggtcaacgtggaagatgctagacctggtgaagctataaaacatgataaagttgatggagagttaagagatgaagcacatccagacttaaagccagagcatgtcgatccaaagggtgtctctggaaaagaaagttctcccccagaagatatgcaggtggaggttgaagtcaataaaaagaggcatctgaatgtggtatttattggtcacgtggatgctggaaagtctactattggaggacaaatactattacttagtggtcaagttgatgaccgtacgatacaaaagtatgagaaagaagcgaaggataaaaacagagagagctggtatatggcctatattatggatacaaatgaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81005" stop="87851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81299" g_stop="81369" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="81" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="123" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="195" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="84888" i_length="1958">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="348" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86009" g_stop="86120" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="460" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87517" g_stop="87551" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="495" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E245448" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81299" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="84889" e_stop="85041"/>
          <exon e_start="86009" e_stop="86120"/>
          <exon e_start="87517" e_stop="87551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTCAATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGGGTAAGTCTTCCTTTTTCTATTTACTCTTTATACACTTGATGCATGATTGTCATTGTAGTGAAGCTTGATGAGTACAAATCTCCCAAGTATCAAGAAGGAAAATTAGGCAAACAAAATAATATGGTAAATGAGGAAATAACTATTGGTACAATGTAGTTTTATTTTCTGTCTTTTTTGAAATTCTTTTATGGTACTGATATTTTTTTATCATTAAGGACTTATAGGTCCTGCCCGTTTATTTATTTCCCCCAAAATCGTATGTCGTCTTACCTCTCAAACATATCTTGAGCGTTTTTAGGTACTCTGTGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTGTTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCGTTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTAGGTAAGCTGTATCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCGGATCGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTATTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCATTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTTGGTAAGCTGTGTCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCAGATACAAGATCACTTTTTACTTATTCCAATTTTTAAAAAAGGATGCAAAATCGCTTTCTTGTTTTTTATGTGAAAGTTTTCATTCGCAAAGCTGATTGGTAACTGGTAAGATGCGATCTAATTGTTTAACTGAGAAACATCATATATTGTTACTTAGAGTTCTCCATATCACCTACAGATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTGGTAAGGTTTACTAGCTTACTATAGTCAAGATATGCTGTCAGTGTTTCTTAATTGATGAACTTGTGTATGACTTTTGCAAAATTCATTGTGGCCTCTTGGTTTGTTAGATAACCTGCGATACATTCTATGAAGCTTGGTTTATCATGATTTTCATTAGTTAGACAAATTTTGGCTGTTGAAGTCACAATTTACCGAGTACCAATGTCAAATGGACCATGACTCAAATAATTCTCAAATAAACTACTTGCATTGTCCACTCTTTTCAGGATCTCATCCAATACGTAGGTTATCTGCAATTTATACCTTACCATTTTAAAGAAGAAGTATGTTATCTACAATATTACTTGCATATTGTGATGGTTTGCTTTCTGTGAATCTTTTGTTCAAATGTGAATGACAAGAAGTGCAGCCACTGATGGCAATAATTAGATATGATAATTGCAATCAAGGAAAAACTAGTTGTTGTTTCACTTTTAATGGATTTGTTAGGTTCACTAATTAGTAATTTAGTTTTGCATTCCGAATTATGTGCTAGTTAATTTGGAAGCTCTGAGAAGTGATCTGGTTGCTTTAGAGCATTTTGTTATTTTAGAAAGCATTGAGTATGTTGTGCAGTATTTTGCGTGTGTGCTGAAGGGTCTTTTTCTTTTTGAAAACAGTTGTTGTGCTTAAGATTCTGTTGCCACCATTAGCTTCTTTGGGTGTATATTGAAGATTTAGCCCTTCTATTTGTCATTTTATTGCATGATGATAACTGAGTTGCTGTTCTAATGATTGGTTAGCCTCATTAGAGAGCTCAAGTTACAACCCAGTAAAACTTATCATCTGATGTTCAAGTTTAGGATATTGTGGCATTTTTCTGTTAAGACTTCCATGAAATGATTGATTTCTTATAAACCAGCCATCTGCAATTCTGCTGGTACTTTCTTTTAATTGGAGTTAGAATTTGGTGGATGTGAAATTGTACTATCAAAGCTTGGATCATTGTTTACTGCTAGAACTCTTGAAGTTCTGAGTTTGGTTACGGAACATAGGGTTACTAGTTCCTGTTAATTCTGATAATCTAGGCACATTCCTAGAGTCCAACTGACCTTTCTATCTGCAAGAGGTTGTTGCAAAGATAGATGCTCATTCTTGTTTTTTTCGGTTTCTTTAATTCTGAAGCTAGTTGTGTGTTGTTTGCATGGTTCCTGATATTTCATGCTTGATTATTCTTGAGATAGAATATCTCTTGATTCCATCTTGTTAACTTCGAGTACACAATTATCGATAATGAGTTTTGAAGAGGGTCCACATCAGTTTAGTTTCTTGCATGTGGAATGATCTTCCACACCGTCTTTGATTAATTATTGCTTTTCCTTTTAGTTTTTAACTTTCCTTTTTCAATGTCTTTTAGGTATATGGCCTATATTATGGATACAAATGAAGAAG</genome_strand>
        <mrna_strand>CACGAGCAATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGCCTATATTATGGATACAAATGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277310" ref_strand="-" ref_description="SGN-E277310 [cLEL-3-L12](-)">
      <seq>tcggcacgaggtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgagccccatggatattgaagaggacatgagggcgctgcagcttgattcatctgaagatcctgtgttggtcaacgtggaagatgctagacctggtgaagctataaaacatgataaagttgatggagaggatagttttatggaagaagagaggaagactgatgatgttgggaaacctgatatgccggaagatggtagagttaagagatgaagcacattcagacttaaagccagagcatgtagatccaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81014" stop="85242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81304" g_stop="81369" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="108" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="0.95"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="180" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83987" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="250" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="84942" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="304" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E277310" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277310" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81304" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83987"/>
          <exon e_start="84889" e_stop="84942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGG</genome_strand>
        <mrna_strand>TCGGCACGAGGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATGAGGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATCCTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAGAGATGAAGCACATTCAGACTTAAAGCCAGAGCATGTAGATCCAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336925" ref_strand="+" ref_description="SGN-E336925 [cTOE-5-C7]">
      <seq>gatttattgtcaccgcaagcacaaactctacgcgtcctctcactcaatgaaccgagcggcatggatattgaagaggacatcaacgcgctgcagcttgattcatctgaagatactgtgttggtcaacgtggaagatgctagacctggtgaagctataaaacatgataaagttgatggagttttatggaagaagagaggaagactgatgatgttgggaaacctgatatgccggaagatggtagagttaaagagatgaagcacatccagacttaaagccagagcatgtcgatccaaagggtgtctctggaaaagaaagttctcccccagaagatatgcacgtggaggttgaagtcaataaaaagaggcatctgaatgtagtatttattggtcacgtggatgctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81007" stop="85343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81306" g_stop="81369" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="106" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="178" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83924" i_length="994">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83925" g_stop="83987" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="241" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="395" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E336925" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81306" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83925" e_stop="83987"/>
          <exon e_start="84889" e_stop="85041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTT-AAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG</genome_strand>
        <mrna_strand>GATTTATTGTCACCGCAAGCACAAACTCTACGCGTCCTCTCACTCAATGAACCGAGCGGCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAACGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCACGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTAGTATTTATTGGTCACGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455320" ref_strand="+" ref_description="SGN-E455320 [cSTS-25-P18]">
      <seq>atttattgtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgcgccatggatattgaagaggacatcaaggcgctgcagcttgattcatctgaagatacagtgttggtgaacgtggaagacgctagacctgatgaagctataaaacatgataaagctgatggagaggatagtcttatggaagaagagaggaagactgatggtgttgagaaacctgatatgctggaagatgagttgagagatgaagcacatccagacttaaagccagagaatgtcgagccaaagggtgtctctggaaaagaaagttcacccccagaagatatgcaggtggaggttgaagtcaataaaaagaggcacctgaatgtggtatttattggtcatgtggatgctggaaagtctactattggaggacaaatactattacttagtggtcaagttgatgaccgtactatacaaaagtacgagaaagaagcgaaggataaaaacagagagagctggtatatggcctatattatggatacaaatgaagaagaaagggtgaagggaataacagttgaagttggaagagcacattttgaaacagagacgaacagatttacaattcttgatgccccgggtcataagagctatgttcccaatatgatcagtggagcatctcaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81007" stop="88045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81307" g_stop="81369" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="103" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83983" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="241" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83984" i_stop="84888" i_length="905">
            <donor d_prob="0.142" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="394" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86009" g_stop="86120" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="506" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87517" g_stop="87562" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="552" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87670" g_stop="87741" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="624" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E455320" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81307" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83983"/>
          <exon e_start="84889" e_stop="85041"/>
          <exon e_start="86009" e_stop="86120"/>
          <exon e_start="87517" e_stop="87562"/>
          <exon e_start="87670" e_stop="87741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGGGTAAGTCTTCCTTTTTCTATTTACTCTTTATACACTTGATGCATGATTGTCATTGTAGTGAAGCTTGATGAGTACAAATCTCCCAAGTATCAAGAAGGAAAATTAGGCAAACAAAATAATATGGTAAATGAGGAAATAACTATTGGTACAATGTAGTTTTATTTTCTGTCTTTTTTGAAATTCTTTTATGGTACTGATATTTTTTTATCATTAAGGACTTATAGGTCCTGCCCGTTTATTTATTTCCCCCAAAATCGTATGTCGTCTTACCTCTCAAACATATCTTGAGCGTTTTTAGGTACTCTGTGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTGTTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCGTTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTAGGTAAGCTGTATCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCGGATCGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTATTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCATTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTTGGTAAGCTGTGTCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCAGATACAAGATCACTTTTTACTTATTCCAATTTTTAAAAAAGGATGCAAAATCGCTTTCTTGTTTTTTATGTGAAAGTTTTCATTCGCAAAGCTGATTGGTAACTGGTAAGATGCGATCTAATTGTTTAACTGAGAAACATCATATATTGTTACTTAGAGTTCTCCATATCACCTACAGATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTGGTAAGGTTTACTAGCTTACTATAGTCAAGATATGCTGTCAGTGTTTCTTAATTGATGAACTTGTGTATGACTTTTGCAAAATTCATTGTGGCCTCTTGGTTTGTTAGATAACCTGCGATACATTCTATGAAGCTTGGTTTATCATGATTTTCATTAGTTAGACAAATTTTGGCTGTTGAAGTCACAATTTACCGAGTACCAATGTCAAATGGACCATGACTCAAATAATTCTCAAATAAACTACTTGCATTGTCCACTCTTTTCAGGATCTCATCCAATACGTAGGTTATCTGCAATTTATACCTTACCATTTTAAAGAAGAAGTATGTTATCTACAATATTACTTGCATATTGTGATGGTTTGCTTTCTGTGAATCTTTTGTTCAAATGTGAATGACAAGAAGTGCAGCCACTGATGGCAATAATTAGATATGATAATTGCAATCAAGGAAAAACTAGTTGTTGTTTCACTTTTAATGGATTTGTTAGGTTCACTAATTAGTAATTTAGTTTTGCATTCCGAATTATGTGCTAGTTAATTTGGAAGCTCTGAGAAGTGATCTGGTTGCTTTAGAGCATTTTGTTATTTTAGAAAGCATTGAGTATGTTGTGCAGTATTTTGCGTGTGTGCTGAAGGGTCTTTTTCTTTTTGAAAACAGTTGTTGTGCTTAAGATTCTGTTGCCACCATTAGCTTCTTTGGGTGTATATTGAAGATTTAGCCCTTCTATTTGTCATTTTATTGCATGATGATAACTGAGTTGCTGTTCTAATGATTGGTTAGCCTCATTAGAGAGCTCAAGTTACAACCCAGTAAAACTTATCATCTGATGTTCAAGTTTAGGATATTGTGGCATTTTTCTGTTAAGACTTCCATGAAATGATTGATTTCTTATAAACCAGCCATCTGCAATTCTGCTGGTACTTTCTTTTAATTGGAGTTAGAATTTGGTGGATGTGAAATTGTACTATCAAAGCTTGGATCATTGTTTACTGCTAGAACTCTTGAAGTTCTGAGTTTGGTTACGGAACATAGGGTTACTAGTTCCTGTTAATTCTGATAATCTAGGCACATTCCTAGAGTCCAACTGACCTTTCTATCTGCAAGAGGTTGTTGCAAAGATAGATGCTCATTCTTGTTTTTTTCGGTTTCTTTAATTCTGAAGCTAGTTGTGTGTTGTTTGCATGGTTCCTGATATTTCATGCTTGATTATTCTTGAGATAGAATATCTCTTGATTCCATCTTGTTAACTTCGAGTACACAATTATCGATAATGAGTTTTGAAGAGGGTCCACATCAGTTTAGTTTCTTGCATGTGGAATGATCTTCCACACCGTCTTTGATTAATTATTGCTTTTCCTTTTAGTTTTTAACTTTCCTTTTTCAATGTCTTTTAGGTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAGGTATTGCTTTATCTATTACTTAAATTGGTATATTACCTCTTTTTTGGGGCTGGTAATGTGGAGGAGCTTACGAGTGATTCTGTGTTTCTTGGTCACTTCCTTTTCAGGGAATAACAGTTGAAGTAGGAAGAGCACATTTTGAAACAGAGACGACAAGATTTACAATTCTTGATGCCCCG</genome_strand>
        <mrna_strand>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACC--GCGCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACAGTGTTGGTGAACGTGGAAGACGCTAGACCTGATGAAGCTATAAAACATGATAAAGCTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTCTTATGGAAGAAGAGAGGAAGACTGATGGTGTTGAGAAACCTGATATGCTGGAAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGAGATGAAGCACATCCAGACTTAAAGCCAGAGAATGTCGAGCCAAAGGGTGTCTCTGGAAAAGAAAGTTCACCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCACCTGAATGTGGTATTTATTGGTCATGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACTATACAAAAGTACGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGCCTATATTATGGATACAAATGAAGAAGAAAGGGTGAAG...........................................................................................................GGAATAACAGTTGAAGTTGGAAGAGCACATTTTGAAACAGAGACGAACAGATTTACAATTCTTGATGCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425765" ref_strand="+" ref_description="SGN-E425765 [STM-45-F9]">
      <seq>atttattgtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgcgccatggatattgaagaggacatcaaggcgctgcagcttgattcatctgaagatacagtgttggtgaacgtggaagacgctagacctgatgaagctataaaacatgataaagctgatggagaggatagtcttatggaagaagagaggaagactgatggtgttgagaaacctgatatgctggaagatgagttgagagatgaagcacatccagacttaaagccagagaatgtcgagccaaagggtgtctctggaaaagaaagttcacccccagaagatatgcaggtggaggttgaagtcaataaaaagaggcacctgaatgtggtatttattggtcatgtggatgctggaaagtctactattggaggacaaatactattacttagtggtcaagttgatgaccgtactatacaaaagtacgagaaagaagcgaaggataaaaacagagagagctggtatatggcctatattatggatacaaatgaagaagaaagggtgaagggaataacagttgaagttggaagagcacattttgaaacagagacgacnagatttacaattcttgatgccccgggtcataagagctatgtttccaatatgatcagtggagcatctcaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81007" stop="88045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81307" g_stop="81369" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="103" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83983" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="241" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83984" i_stop="84888" i_length="905">
            <donor d_prob="0.142" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="394" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86009" g_stop="86120" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="506" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87517" g_stop="87562" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="552" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87670" g_stop="87741" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="624" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E425765" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81307" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83983"/>
          <exon e_start="84889" e_stop="85041"/>
          <exon e_start="86009" e_stop="86120"/>
          <exon e_start="87517" e_stop="87562"/>
          <exon e_start="87670" e_stop="87741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGGGTAAGTCTTCCTTTTTCTATTTACTCTTTATACACTTGATGCATGATTGTCATTGTAGTGAAGCTTGATGAGTACAAATCTCCCAAGTATCAAGAAGGAAAATTAGGCAAACAAAATAATATGGTAAATGAGGAAATAACTATTGGTACAATGTAGTTTTATTTTCTGTCTTTTTTGAAATTCTTTTATGGTACTGATATTTTTTTATCATTAAGGACTTATAGGTCCTGCCCGTTTATTTATTTCCCCCAAAATCGTATGTCGTCTTACCTCTCAAACATATCTTGAGCGTTTTTAGGTACTCTGTGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTGTTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCGTTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTAGGTAAGCTGTATCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCGGATCGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTATTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCATTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTTGGTAAGCTGTGTCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCAGATACAAGATCACTTTTTACTTATTCCAATTTTTAAAAAAGGATGCAAAATCGCTTTCTTGTTTTTTATGTGAAAGTTTTCATTCGCAAAGCTGATTGGTAACTGGTAAGATGCGATCTAATTGTTTAACTGAGAAACATCATATATTGTTACTTAGAGTTCTCCATATCACCTACAGATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTGGTAAGGTTTACTAGCTTACTATAGTCAAGATATGCTGTCAGTGTTTCTTAATTGATGAACTTGTGTATGACTTTTGCAAAATTCATTGTGGCCTCTTGGTTTGTTAGATAACCTGCGATACATTCTATGAAGCTTGGTTTATCATGATTTTCATTAGTTAGACAAATTTTGGCTGTTGAAGTCACAATTTACCGAGTACCAATGTCAAATGGACCATGACTCAAATAATTCTCAAATAAACTACTTGCATTGTCCACTCTTTTCAGGATCTCATCCAATACGTAGGTTATCTGCAATTTATACCTTACCATTTTAAAGAAGAAGTATGTTATCTACAATATTACTTGCATATTGTGATGGTTTGCTTTCTGTGAATCTTTTGTTCAAATGTGAATGACAAGAAGTGCAGCCACTGATGGCAATAATTAGATATGATAATTGCAATCAAGGAAAAACTAGTTGTTGTTTCACTTTTAATGGATTTGTTAGGTTCACTAATTAGTAATTTAGTTTTGCATTCCGAATTATGTGCTAGTTAATTTGGAAGCTCTGAGAAGTGATCTGGTTGCTTTAGAGCATTTTGTTATTTTAGAAAGCATTGAGTATGTTGTGCAGTATTTTGCGTGTGTGCTGAAGGGTCTTTTTCTTTTTGAAAACAGTTGTTGTGCTTAAGATTCTGTTGCCACCATTAGCTTCTTTGGGTGTATATTGAAGATTTAGCCCTTCTATTTGTCATTTTATTGCATGATGATAACTGAGTTGCTGTTCTAATGATTGGTTAGCCTCATTAGAGAGCTCAAGTTACAACCCAGTAAAACTTATCATCTGATGTTCAAGTTTAGGATATTGTGGCATTTTTCTGTTAAGACTTCCATGAAATGATTGATTTCTTATAAACCAGCCATCTGCAATTCTGCTGGTACTTTCTTTTAATTGGAGTTAGAATTTGGTGGATGTGAAATTGTACTATCAAAGCTTGGATCATTGTTTACTGCTAGAACTCTTGAAGTTCTGAGTTTGGTTACGGAACATAGGGTTACTAGTTCCTGTTAATTCTGATAATCTAGGCACATTCCTAGAGTCCAACTGACCTTTCTATCTGCAAGAGGTTGTTGCAAAGATAGATGCTCATTCTTGTTTTTTTCGGTTTCTTTAATTCTGAAGCTAGTTGTGTGTTGTTTGCATGGTTCCTGATATTTCATGCTTGATTATTCTTGAGATAGAATATCTCTTGATTCCATCTTGTTAACTTCGAGTACACAATTATCGATAATGAGTTTTGAAGAGGGTCCACATCAGTTTAGTTTCTTGCATGTGGAATGATCTTCCACACCGTCTTTGATTAATTATTGCTTTTCCTTTTAGTTTTTAACTTTCCTTTTTCAATGTCTTTTAGGTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAGGTATTGCTTTATCTATTACTTAAATTGGTATATTACCTCTTTTTTGGGGCTGGTAATGTGGAGGAGCTTACGAGTGATTCTGTGTTTCTTGGTCACTTCCTTTTCAGGGAATAACAGTTGAAGTAGGAAGAGCACATTTTGAAACAGAGACGACAAGATTTACAATTCTTGATGCCCCG</genome_strand>
        <mrna_strand>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACC--GCGCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACAGTGTTGGTGAACGTGGAAGACGCTAGACCTGATGAAGCTATAAAACATGATAAAGCTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTCTTATGGAAGAAGAGAGGAAGACTGATGGTGTTGAGAAACCTGATATGCTGGAAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGAGATGAAGCACATCCAGACTTAAAGCCAGAGAATGTCGAGCCAAAGGGTGTCTCTGGAAAAGAAAGTTCACCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCACCTGAATGTGGTATTTATTGGTCATGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACTATACAAAAGTACGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGCCTATATTATGGATACAAATGAAGAAGAAAGGGTGAAG...........................................................................................................GGAATAACAGTTGAAGTTGGAAGAGCACATTTTGAAACAGAGACGACNAGATTTACAATTCTTGATGCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203409" ref_strand="+" ref_description="SGN-E203409 [cLEB-3-J18]">
      <seq>gcacgaggtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgagccccatggatattgaagaggacatcaaggcgctgcagcttgattcatctgaagatactgtgttggtcaacgtggaagatgctagacctggtgaagctataaaacatgataaagttgatggagaggatagttttatggaagaagagaggaagactgatgatgttgggaaacctgatatgccggaagatggtagagttaagagatgaagcacatccagacttaaagccagagcatgtcgatccaaagggtgtctctggaaaagaaagttctcccccagaagatatgcaggtggaggttgaagtcaataaaaagaggcatctgaatgtggtatttattggtcacgtggatgctggaaagtctactattggaggacaaatactattacttagtggtcaagttgatgaccgtacgatacaaaagtatgagaaagaagccgaagataaaaacagagagagctggtatatggcctatattatggatacaaatgaagaagagagggtgaagggaataacagttgaagtatgaagagcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81014" stop="88001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81307" g_stop="81369" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="105" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="177" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83987" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="247" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="400" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86009" g_stop="86120" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="512" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87517" g_stop="87562" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="558" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87670" g_stop="87701" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="590" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E203409" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81307" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83987"/>
          <exon e_start="84889" e_stop="85041"/>
          <exon e_start="86009" e_stop="86120"/>
          <exon e_start="87517" e_stop="87562"/>
          <exon e_start="87670" e_stop="87701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGGGTAAGTCTTCCTTTTTCTATTTACTCTTTATACACTTGATGCATGATTGTCATTGTAGTGAAGCTTGATGAGTACAAATCTCCCAAGTATCAAGAAGGAAAATTAGGCAAACAAAATAATATGGTAAATGAGGAAATAACTATTGGTACAATGTAGTTTTATTTTCTGTCTTTTTTGAAATTCTTTTATGGTACTGATATTTTTTTATCATTAAGGACTTATAGGTCCTGCCCGTTTATTTATTTCCCCCAAAATCGTATGTCGTCTTACCTCTCAAACATATCTTGAGCGTTTTTAGGTACTCTGTGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTGTTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCGTTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTAGGTAAGCTGTATCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCGGATCGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTATTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCATTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTTGGTAAGCTGTGTCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCAGATACAAGATCACTTTTTACTTATTCCAATTTTTAAAAAAGGATGCAAAATCGCTTTCTTGTTTTTTATGTGAAAGTTTTCATTCGCAAAGCTGATTGGTAACTGGTAAGATGCGATCTAATTGTTTAACTGAGAAACATCATATATTGTTACTTAGAGTTCTCCATATCACCTACAGATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTGGTAAGGTTTACTAGCTTACTATAGTCAAGATATGCTGTCAGTGTTTCTTAATTGATGAACTTGTGTATGACTTTTGCAAAATTCATTGTGGCCTCTTGGTTTGTTAGATAACCTGCGATACATTCTATGAAGCTTGGTTTATCATGATTTTCATTAGTTAGACAAATTTTGGCTGTTGAAGTCACAATTTACCGAGTACCAATGTCAAATGGACCATGACTCAAATAATTCTCAAATAAACTACTTGCATTGTCCACTCTTTTCAGGATCTCATCCAATACGTAGGTTATCTGCAATTTATACCTTACCATTTTAAAGAAGAAGTATGTTATCTACAATATTACTTGCATATTGTGATGGTTTGCTTTCTGTGAATCTTTTGTTCAAATGTGAATGACAAGAAGTGCAGCCACTGATGGCAATAATTAGATATGATAATTGCAATCAAGGAAAAACTAGTTGTTGTTTCACTTTTAATGGATTTGTTAGGTTCACTAATTAGTAATTTAGTTTTGCATTCCGAATTATGTGCTAGTTAATTTGGAAGCTCTGAGAAGTGATCTGGTTGCTTTAGAGCATTTTGTTATTTTAGAAAGCATTGAGTATGTTGTGCAGTATTTTGCGTGTGTGCTGAAGGGTCTTTTTCTTTTTGAAAACAGTTGTTGTGCTTAAGATTCTGTTGCCACCATTAGCTTCTTTGGGTGTATATTGAAGATTTAGCCCTTCTATTTGTCATTTTATTGCATGATGATAACTGAGTTGCTGTTCTAATGATTGGTTAGCCTCATTAGAGAGCTCAAGTTACAACCCAGTAAAACTTATCATCTGATGTTCAAGTTTAGGATATTGTGGCATTTTTCTGTTAAGACTTCCATGAAATGATTGATTTCTTATAAACCAGCCATCTGCAATTCTGCTGGTACTTTCTTTTAATTGGAGTTAGAATTTGGTGGATGTGAAATTGTACTATCAAAGCTTGGATCATTGTTTACTGCTAGAACTCTTGAAGTTCTGAGTTTGGTTACGGAACATAGGGTTACTAGTTCCTGTTAATTCTGATAATCTAGGCACATTCCTAGAGTCCAACTGACCTTTCTATCTGCAAGAGGTTGTTGCAAAGATAGATGCTCATTCTTGTTTTTTTCGGTTTCTTTAATTCTGAAGCTAGTTGTGTGTTGTTTGCATGGTTCCTGATATTTCATGCTTGATTATTCTTGAGATAGAATATCTCTTGATTCCATCTTGTTAACTTCGAGTACACAATTATCGATAATGAGTTTTGAAGAGGGTCCACATCAGTTTAGTTTCTTGCATGTGGAATGATCTTCCACACCGTCTTTGATTAATTATTGCTTTTCCTTTTAGTTTTTAACTTTCCTTTTTCAATGTCTTTTAGGTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAGGTATTGCTTTATCTATTACTTAAATTGGTATATTACCTCTTTTTTGGGGCTGGTAATGTGGAGGAGCTTACGAGTGATTCTGTGTTTCTTGGTCACTTCCTTTTCAGGGAATAACAGTTGAAGTAGGAAGAGCACATTT</genome_strand>
        <mrna_strand>GCACGAGGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCCGAAGATAAAAACAGAGAGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAG...........................................................................................................GGAATAACAGTTGAAGTATGAAGAGCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487636" ref_strand="+" ref_description="SGN-E487636 [cSTE-26-M1]">
      <seq>ttattgtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgcgccatggatattgaagaggacatcaaggcgctgcagcttgattcatctgaagatactgtgttggtcaacgtggaagacgctagacctgatgaagctataaaacatgataaagctgatggagaggatagtcttatggaagaagagaggaagactgacgatgttgaaaaacctgatatgctggaagatgagttgagagatgaagcacatccagacttaaagccagagcatgttgagccaaagggtgtctctggaaaagagagttcacccccagaagatatgcaggtggaggttgaagtcaataaaaagaggcacctgaatgtggtatttattggtcatgtggatgctggaaagtctactattggaggacaaatactattacttagtggtcaagttgatgaccgtactatacaaaagtacgagaaagaagcgaaggataaaaacagagagagctggtatatggcctatattatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81009" stop="87837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81309" g_stop="81369" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="101" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="173" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83983" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="239" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83984" i_stop="84888" i_length="905">
            <donor d_prob="0.142" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="392" r_length="153" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86009" g_stop="86120" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="504" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87517" g_stop="87537" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="525" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E487636" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81309" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83983"/>
          <exon e_start="84889" e_stop="85041"/>
          <exon e_start="86009" e_stop="86120"/>
          <exon e_start="87517" e_stop="87537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGGGTAAGTCTTCCTTTTTCTATTTACTCTTTATACACTTGATGCATGATTGTCATTGTAGTGAAGCTTGATGAGTACAAATCTCCCAAGTATCAAGAAGGAAAATTAGGCAAACAAAATAATATGGTAAATGAGGAAATAACTATTGGTACAATGTAGTTTTATTTTCTGTCTTTTTTGAAATTCTTTTATGGTACTGATATTTTTTTATCATTAAGGACTTATAGGTCCTGCCCGTTTATTTATTTCCCCCAAAATCGTATGTCGTCTTACCTCTCAAACATATCTTGAGCGTTTTTAGGTACTCTGTGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTGTTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCGTTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTAGGTAAGCTGTATCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCGGATCGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTATTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCATTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTTGGTAAGCTGTGTCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCAGATACAAGATCACTTTTTACTTATTCCAATTTTTAAAAAAGGATGCAAAATCGCTTTCTTGTTTTTTATGTGAAAGTTTTCATTCGCAAAGCTGATTGGTAACTGGTAAGATGCGATCTAATTGTTTAACTGAGAAACATCATATATTGTTACTTAGAGTTCTCCATATCACCTACAGATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTGGTAAGGTTTACTAGCTTACTATAGTCAAGATATGCTGTCAGTGTTTCTTAATTGATGAACTTGTGTATGACTTTTGCAAAATTCATTGTGGCCTCTTGGTTTGTTAGATAACCTGCGATACATTCTATGAAGCTTGGTTTATCATGATTTTCATTAGTTAGACAAATTTTGGCTGTTGAAGTCACAATTTACCGAGTACCAATGTCAAATGGACCATGACTCAAATAATTCTCAAATAAACTACTTGCATTGTCCACTCTTTTCAGGATCTCATCCAATACGTAGGTTATCTGCAATTTATACCTTACCATTTTAAAGAAGAAGTATGTTATCTACAATATTACTTGCATATTGTGATGGTTTGCTTTCTGTGAATCTTTTGTTCAAATGTGAATGACAAGAAGTGCAGCCACTGATGGCAATAATTAGATATGATAATTGCAATCAAGGAAAAACTAGTTGTTGTTTCACTTTTAATGGATTTGTTAGGTTCACTAATTAGTAATTTAGTTTTGCATTCCGAATTATGTGCTAGTTAATTTGGAAGCTCTGAGAAGTGATCTGGTTGCTTTAGAGCATTTTGTTATTTTAGAAAGCATTGAGTATGTTGTGCAGTATTTTGCGTGTGTGCTGAAGGGTCTTTTTCTTTTTGAAAACAGTTGTTGTGCTTAAGATTCTGTTGCCACCATTAGCTTCTTTGGGTGTATATTGAAGATTTAGCCCTTCTATTTGTCATTTTATTGCATGATGATAACTGAGTTGCTGTTCTAATGATTGGTTAGCCTCATTAGAGAGCTCAAGTTACAACCCAGTAAAACTTATCATCTGATGTTCAAGTTTAGGATATTGTGGCATTTTTCTGTTAAGACTTCCATGAAATGATTGATTTCTTATAAACCAGCCATCTGCAATTCTGCTGGTACTTTCTTTTAATTGGAGTTAGAATTTGGTGGATGTGAAATTGTACTATCAAAGCTTGGATCATTGTTTACTGCTAGAACTCTTGAAGTTCTGAGTTTGGTTACGGAACATAGGGTTACTAGTTCCTGTTAATTCTGATAATCTAGGCACATTCCTAGAGTCCAACTGACCTTTCTATCTGCAAGAGGTTGTTGCAAAGATAGATGCTCATTCTTGTTTTTTTCGGTTTCTTTAATTCTGAAGCTAGTTGTGTGTTGTTTGCATGGTTCCTGATATTTCATGCTTGATTATTCTTGAGATAGAATATCTCTTGATTCCATCTTGTTAACTTCGAGTACACAATTATCGATAATGAGTTTTGAAGAGGGTCCACATCAGTTTAGTTTCTTGCATGTGGAATGATCTTCCACACCGTCTTTGATTAATTATTGCTTTTCCTTTTAGTTTTTAACTTTCCTTTTTCAATGTCTTTTAGGTATATGGCCTATATTATGGA</genome_strand>
        <mrna_strand>TTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACC--GCGCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACTGTGTTGGTCAACGTGGAAGACGCTAGACCTGATGAAGCTATAAAACATGATAAAGCTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTCTTATGGAAGAAGAGAGGAAGACTGACGATGTTGAAAAACCTGATATGCTGGAAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTTGAGCCAAAGGGTGTCTCTGGAAAAGAGAGTTCACCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCACCTGAATGTGGTATTTATTGGTCATGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACTATACAAAAGTACGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGCCTATATTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587192" ref_strand="-" ref_description="SGN-E587192 [78306]">
      <seq>aagcacaaaccctacgcgtcctctcactcaattaaccgcgccatggatattgaagaggacatcaaggcgtgcagcttgattcatctgaagatacagtgttggtgaacgtggaagacgctagacctgatgaagctataaaacatgataaagctgatggagaggatagtcttatggaagaagagaggaagactgatggtgttgagaaacctgatatgctggaagatgagttgagagatgaagcacatccagacttaaagccagagaatgtcgagccaaagggtgtctctggaaaagaaagttcacccccagaagatatgcaggtggaggttgaagtcaatcctcgtgccgaattcggcacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81022" stop="85301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81322" g_stop="81369" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="87" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="159" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83983" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="225" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83984" i_stop="84888" i_length="905">
            <donor d_prob="0.142" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="84999" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="336" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-E587192" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587192" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81322" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83983"/>
          <exon e_start="84889" e_stop="84999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCA</genome_strand>
        <mrna_strand>AAGCACAAACCCTACGCGTCCTCTCACTCAATTAACC--GCGCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCG-TGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACAGTGTTGGTGAACGTGGAAGACGCTAGACCTGATGAAGCTATAAAACATGATAAAGCTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTCTTATGGAAGAAGAGAGGAAGACTGATGGTGTTGAGAAACCTGATATGCTGGAAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGAGATGAAGCACATCCAGACTTAAAGCCAGAGAATGTCGAGCCAAAGGGTGTCTCTGGAAAAGAAAGTTCACCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>204</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23477" PGL_stop="25787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23477" e_stop="23611"/>
            <exon e_start="24125" e_stop="24447"/>
            <exon e_start="25120" e_stop="25215"/>
            <exon e_start="25306" e_stop="25787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.963"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.960"/>
          <exon-intron don_prob="0.898" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="23477" e_stop="23611" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23612" i_stop="24124" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="24125" e_stop="24447" e_length="323"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24448" i_stop="25119" i_length="672"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25120" e_stop="25215" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25216" i_stop="25305" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="25306" e_stop="25787" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23477" stop="23611"/>
              <exon start="24125" stop="24424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24226" stop="24447"/>
              <exon start="25120" stop="25215"/>
              <exon start="25306" stop="25610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24404" stop="24447"/>
              <exon start="25120" stop="25215"/>
              <exon start="25306" stop="25787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATCATTTTCCCCCTCATTTGCATGTAAAACTCCATATCCCCCAAGAAATACACAAAATAGGCATTACCTTAACAATATCCTCTCCTAATTAGGCAGGGCTAAGCTCCTTTATTAAGAAGATCATTCAAAT : ATTGACTAGAGGAAGACTTTCACTTGGCGGGGAAGGTGTTAAGGAAAAAAAAAACATAAAAAAAAAATAAATTCTTTTTCTTATTAATTAAGTAACTGCTCTATTACTGTAATCAATAAGTTTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCCGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCTTATGTTGTTGTCAAAATGGGTAATCAG : AAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTG : ACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACCAAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTCTGTTGTTTATTCTAACCTGATTTGCCCCTATATATAGGCCAGAATTGATAAATATGCCTTTGTACAACACAAGGTCTGCACTCTGCAGCTTAGTAAAATCTGATTTCAAACATTCTATATATATATACTCTGTTTGCTGAATATGGAGCTACAGATGATATATACTTCTTATACAAA</gDNA_template>
            <first_frame> I  S  S  F  S  P  S  F  A  C  K  T  P  Y  P  P  R  N  T  Q  N  R  H  Y  L  N  N  I  L  S  *  L  G  R  A  K  L  L  Y  *  E  D  H  S  N  :  I  D  *  R  K  T  F  T  W  R  G  R  C  *  G  K  K  K  H  K  K  K  I  N  S  F  S  Y  *  L  S  N  C  S  I  T  V  I  N  K  F  F  F  F  F  E  K  K  N  I  K  R  G  V  Y  I  L  F  K  A  A  E  E  G  R  I  *  E  N  P  *  W  T  I  F  L  V  F  *  E  S  K  L  R  E  V  *  T  S  L  Y  V  M  S  A  A  V  I  L  M  L  L  S  K  W  V  I  R :   N  *  R  R  E  L  *  R  R  M  L  I  L  N  G  M  N  I  L  P  F  L  Y  Q  M  Q  I  F  L  *  S  * :   L  Y  T  I  T  I  G  S  A  W  M  T  K  W  E  M  Q  N  L  I  S  N  H  F  *  M  L  *  K  *  I  *  I  L  S  H  V  A  Q  *  S  Q  E  K  R  R  A  G  Q  T  V  C  L  K  R  A  K  *  H  G  K  T  T  K  L  C  K  I  C  A  S  D  *  E  M  W  S  V  E  R  *  N  F  N  F  S  G  S  I  F  L  E  A  N  V  Y  R  D  L  S  L  L  L  F  I  L  T  *  F  A  P  I  Y  R  P  E  L  I  N  M  P  L  Y  N  T  R  S  A  L  C  S  L  V  K  S  D  F  K  H  S  I  Y  I  Y  S  V  C  *  I  W  S  Y  R  *  Y  I  L  L  I  Q  </first_frame>
            <second_frame>  F  H  H  F  P  P  H  L  H  V  K  L  H  I  P  Q  E  I  H  K  I  G  I  T  L  T  I  S  S  P  N  *  A  G  L  S  S  F  I  K  K  I  I  Q  I :   L  T  R  G  R  L  S  L  G  G  E  G  V  K  E  K  K  N  I  K  K  K  *  I  L  F  L  I  N  *  V  T  A  L  L  L  *  S  I  S  F  F  F  F  L  K  K  K  I  *  R  G  E  F  I  F  C  L  K  Q  P  R  K  E  E  Y  R  K  I  L  N  G  Q  S  F  W  S  F  K  N  Q  N  *  E  R  Y  K  P  R  C  T  *  C  P  Q  Q  *  S  L  C  C  C  Q  N  G  *  S   : E  T  E  D  A  S  Y  K  E  G  C  *  S  *  M  E  *  I  S  Y  P  F  C  I  R  C  K  S  S  C  E  A   : D  C  I  R  S  R  *  V  Q  H  G  *  Q  N  G  R  C  R  I  *  Y  Q  T  I  F  R  C  F  E  N  E  F  R  F  S  P  M  W  H  S  D  H  K  R  N  A  V  Q  D  K  L  S  V  *  R  E  Q  S  D  M  A  R  Q  P  S  C  A  R  F  V  P  Q  I  E  K  C  G  V  W  R  G  R  T  S  T  S  V  D  Q  Y  S  W  K  Q  T  F  I  E  I  Y  L  F  C  C  L  F  *  P  D  L  P  L  Y  I  G  Q  N  *  *  I  C  L  C  T  T  Q  G  L  H  S  A  A  *  *  N  L  I  S  N  I  L  Y  I  Y  T  L  F  A  E  Y  G  A  T  D  D  I  Y  F  L  Y  K </second_frame>
            <third_frame>   F  I  I  F  P  L  I  C  M  *  N  S  I  S  P  K  K  Y  T  K  *  A  L  P  *  Q  Y  P  L  L  I  R  Q  G  *  A  P  L  L  R  R  S  F  K   : Y  *  L  E  E  D  F  H  L  A  G  K  V  L  R  K  K  K  T  *  K  K  N  K  F  F  F  L  L  I  K  *  L  L  Y  Y  C  N  Q  *  V  F  F  F  F  *  K  K  K  Y  K  E  G  S  L  Y  F  V  *  S  S  R  G  R  K  N  I  G  K  S  L  M  D  N  L  F  G  L  L  R  I  K  I  K  R  G  I  N  L  A  V  R  D  V  R  S  S  D  P  Y  V  V  V  K  M  G  N  Q  :  K  L  K  T  R  V  I  K  K  D  V  N  P  E  W  N  E  Y  L  T  L  S  V  S  D  A  N  L  P  V  K  L  :  T  V  Y  D  H  D  R  F  S  M  D  D  K  M  G  D  A  E  F  D  I  K  P  F  L  D  A  L  K  M  N  L  D  S  L  P  C  G  T  V  I  T  R  E  T  P  C  R  T  N  C  L  S  E  E  S  K  V  T  W  Q  D  N  Q  V  V  Q  D  L  C  L  R  L  R  N  V  E  C  G  E  V  E  L  Q  L  Q  W  I  N  I  P  G  S  K  R  L  *  R  F  I  S  S  V  V  Y  S  N  L  I  C  P  Y  I  *  A  R  I  D  K  Y  A  F  V  Q  H  K  V  C  T  L  Q  L  S  K  I  *  F  Q  T  F  Y  I  Y  I  L  C  L  L  N  M  E  L  Q  M  I  Y  T  S  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24301" stop="24447"/>
                    <exon start="25120" stop="25215"/>
                    <exon start="25306" stop="25596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRGRKNIGKSLMDNLFGLLRIKIKRGINLAVRDVRSSDPYVVVKMGNQKLKTRVIKKDVNPEWNEYLTLSVSDANLPVKLTVYDHDRFSMDDKMGDAEFDIKPFLDALKMNLDSLPCGTVITRETPCRTNCLSEESKVTWQDNQVVQDLCLRLRNVECGEVELQLQWINIPGSKRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="31625" PGL_stop="32273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31625" e_stop="32273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="31625" e_stop="32273" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31625" stop="32273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31626" stop="32010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGAAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCATCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTGAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  K  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  I  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  E  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  S  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  E  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  *  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31626" stop="32273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISSAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32284" PGL_stop="33091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32284" e_stop="33091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="32284" e_stop="33091" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32284" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCAAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCTAGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAAATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  Q  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  S  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  K  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  L  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  K  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  *  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  N  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32286" stop="32924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="34450" PGL_stop="38457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34450" e_stop="34566"/>
            <exon e_start="34864" e_stop="34985"/>
            <exon e_start="35164" e_stop="35301"/>
            <exon e_start="35468" e_stop="35605"/>
            <exon e_start="36248" e_stop="36391"/>
            <exon e_start="36559" e_stop="36669"/>
            <exon e_start="36759" e_stop="36900"/>
            <exon e_start="37101" e_stop="37381"/>
            <exon e_start="37515" e_stop="37676"/>
            <exon e_start="37760" e_stop="37813"/>
            <exon e_start="37992" e_stop="38066"/>
            <exon e_start="38151" e_stop="38457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.045" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34450" e_stop="34566" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34864" e_stop="34985" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35301" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35468" e_stop="35605" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36248" e_stop="36391" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36559" e_stop="36669" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36759" e_stop="36900" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37101" e_stop="37381" e_length="281"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.045">
            <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="37515" e_stop="37676" e_length="162"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37677" i_stop="37759" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37760" e_stop="37813" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="37814" i_stop="37991" i_length="178"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37992" e_stop="38066" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.887" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38067" i_stop="38150" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="38151" e_stop="38457" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34450" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34450" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34454" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37381"/>
              <exon start="37515" stop="37676"/>
              <exon start="37760" stop="37813"/>
              <exon start="37992" stop="38066"/>
              <exon start="38151" stop="38457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36276" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36630" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37381"/>
              <exon start="37515" stop="37532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG : AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG : GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG : AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG : GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG : GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG : ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG : ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG : GACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAG : ATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGATCGAACTGAGCAG : TTCATGCAAGTTCTCCAGAAAGAGTTGGATACTGTGGAGAATGAAAGAGAGTTATTTATCCAAGAATTTTCTGAA : CAAGACTACAATGATATAGTTGGAGGTTGGAAGGCCAAGCTAGTTAGAAGTTCATCTGGTGAGCAGAGATGGGGTTTGTTCTTTGCCAAGAAAAATTGATGTGTGTTATTGTGTACTGTTGTTTCATTGAAGATAATAAAAATGATTTAAGTTTGATGTTGTAATGATTCGAGGCTCTACCCTATGTAGACCCCATTTATAGGATTACACTGGCTATGTTGTTTATTTTAATGATTCCTACTCTGTCGGTTTAATGTAATATGTGAGTTGGTTAAGATCATGTTATTAATAAAAGTTTGTCATAAAG</gDNA_template>
            <first_frame> L  M  Q  Q  R  G  R  I  S  N  C  K  S  R  S  F  S  R  S  R  L  A  V  E  G  S  *  P  L  Q  L  L  S  W  L  P  L  L  Q  :  R  *  E  K  S  V  R  F  K  R  V  I  G  W  S  K  L  V  N  S  I  W  R  Q  *  C  V  I  L  Q  H  L  I  L  T  K  R  I  G  L  R :   C  F  H  C  S  L  H  M  K  V  N  P  C  W  N  W  V  L  V  L  A  V  S  L  G  T  *  P  R  R  L  G  S  L  *  Q  W  T  L  L  K  K  *  L  R  R :   M  K  V  S  T  G  T  T  R  M  S  S  L  C  V  L  M  *  L  H  Q  I  *  R  F  Y  L  N  Q  W  T  *  Y  F  L  T  G  Y  *  C  I  F  P  T  K  R :   F  R  T  L  R  R  E  *  S  N  G  *  K  L  V  A  I  Y  F  L  E  R  H  A  S  I  N  Q  E  T  T  R  E  R  T  T  Q  P  T  I  E  S  L  D  F  I  Q  R :   F  S  K  N  V  L  *  R  M  M  L  E  N  H  M  N  F  L  L  L  V  I  S  A  L  K  L  M  *  K  T  K  R  I  K  M  R :   F  A  G  Y  G  R  R  F  I  P  R  M  T  G  D  S  S  I  S  W  T  L  F  S  T  S  L  M  V  Y  *  D  M  N  V  C  S  G  Q  A  L  S  A  Q  E  E  L  :  T  P  P  K  N  S  L  P  *  W  I  F  S  L  A  K  R  S  L  T  L  A  V  A  L  E  E  V  T  F  T  W  L  R  S  M  M  F  M  L  *  A  L  I  F  Q  L  T  *  S  H  W  L  L  N  V  L  L  G  A  N  A  R  L  N  L  R  L  L  I  A  R  *  K  H  I  L  K  N  H  S  M  *  Y  T  A  G  T  L  S  C  T  S  R :   T  S  L  H  Y  S  D  L  S  I  S  G  *  S  L  E  A  E  S  S  *  A  I  T  A  K  R  Q  D  Q  L  P  K  T  L  Q  R  I  S  N  K  E  A  T  I  Y  M  M  L  K  H  M  D  R :   C  L  E  M  L  V  S  T  K  L  L  L  M  I  E  L  S  S :   S  C  K  F  S  R  K  S  W  I  L  W  R  M  K  E  S  Y  L  S  K  N  F  L  N :   K  T  T  M  I  *  L  E  V  G  R  P  S  *  L  E  V  H  L  V  S  R  D  G  V  C  S  L  P  R  K  I  D  V  C  Y  C  V  L  L  F  H  *  R  *  *  K  *  F  K  F  D  V  V  M  I  R  G  S  T  L  C  R  P  H  L  *  D  Y  T  G  Y  V  V  Y  F  N  D  S  Y  S  V  G  L  M  *  Y  V  S  W  L  R  S  C  Y  *  *  K  F  V  I  K </first_frame>
            <second_frame>  *  C  S  R  E  V  E  L  V  I  V  N  Q  G  P  F  L  D  L  V  L  L  L  K  V  L  N  L  F  S  F  Y  H  G  C  H  C  S  R :   G  R  R  R  A  *  D  S  K  E  L  L  D  G  A  N  *  *  T  Q  F  G  G  N  D  A  *  F  C  S  I  *  S  *  Q  R  G  *  A  *   : G  A  F  T  A  P  F  I  *  R  *  I  R  V  G  I  G  C  W  Y  W  P  F  H  W  G  L  S  R  E  G  W  G  A  C  S  S  G  L  Y  *  R  S  D  *  E   : E  *  K  Y  Q  R  A  P  Q  E  C  Q  V  C  V  C  *  C  D  F  T  R  F  D  G  F  T  *  I  S  G  L  D  I  F  *  L  A  T  D  V  S  F  Q  R  R   : G  S  G  P  C  G  E  N  D  Q  M  V  E  S  W  W  L  Y  I  F  *  R  D  M  L  P  S  I  R  R  P  Q  G  K  E  Q  P  N  P  L  S  R  A  S  I  L  Y  K   : G  F  P  R  M  Y  F  K  G  *  C  W  K  I  I  *  T  F  S  Y  W  L  *  V  H  *  N  L  C  K  K  Q  K  E  S  K  *   : D  L  L  D  M  A  E  G  S  F  R  G  *  Q  G  I  P  A  F  L  G  H  C  S  V  Q  V  *  W  Y  T  E  I  *  T  C  V  R  G  R  L  C  Q  H  R  R  N  * :   H  H  Q  R  I  R  C  H  D  G  S  S  A  W  R  K  G  P  *  R  W  L  W  H  W  R  R  *  L  L  H  G  *  E  V  *  C  S  C  C  R  H  *  S  F  S  *  H  D  H  I  G  F  *  T  C  Y  W  A  Q  M  R  G  *  I  *  G  C  *  L  H  G  E  N  I  S  *  R  I  I  R  C  D  I  Q  P  G  H  Y  P  A  H  P   : G  Q  A  C  I  I  Q  I  F  L  *  V  A  E  A  W  R  Q  S  P  H  K  R  L  L  Q  K  G  R  T  S  F  R  R  L  C  S  V  Y  Q  T  K  R  L  R  F  T  *  C  *  S  I  W  T   : D  A  *  R  C  W  F  Q  R  S  Y  C  *  *  S  N  *  A   : V  H  A  S  S  P  E  R  V  G  Y  C  G  E  *  K  R  V  I  Y  P  R  I  F  *   : T  R  L  Q  *  Y  S  W  R  L  E  G  Q  A  S  *  K  F  I  W  *  A  E  M  G  F  V  L  C  Q  E  K  L  M  C  V  I  V  Y  C  C  F  I  E  D  N  K  N  D  L  S  L  M  L  *  *  F  E  A  L  P  Y  V  D  P  I  Y  R  I  T  L  A  M  L  F  I  L  M  I  P  T  L  S  V  *  C  N  M  *  V  G  *  D  H  V  I  N  K  S  L  S  *   </second_frame>
            <third_frame>   D  A  A  E  R  *  N  *  *  L  *  I  K  V  L  F  *  I  S  S  C  C  *  R  F  L  T  S  S  A  S  I  M  A  A  I  A  P   : E  V  G  E  E  R  E  I  Q  K  S  Y  W  M  E  Q  T  S  E  L  N  L  E  A  M  M  R  D  S  A  A  S  D  L  D  K  E  D  R  P  E  :  V  L  S  L  L  P  S  Y  E  G  K  S  V  L  E  L  G  A  G  I  G  R  F  T  G  D  L  A  E  K  A  G  E  L  V  A  V  D  F  I  E  E  V  T  K  K  :  N  E  S  I  N  G  H  H  K  N  V  K  F  V  C  A  D  V  T  S  P  D  L  T  V  L  P  E  S  V  D  L  I  F  S  N  W  L  L  M  Y  L  S  N  E  E  :  V  Q  D  L  A  E  R  M  I  K  W  L  K  V  G  G  Y  I  F  F  R  E  T  C  F  H  Q  S  G  D  H  K  G  K  N  N  P  T  H  Y  R  E  P  R  F  Y  T  K  :  V  F  Q  E  C  T  L  K  D  D  A  G  K  S  Y  E  L  S  L  I  G  Y  K  C  I  E  T  Y  V  K  N  K  K  N  Q  N  E  :  I  C  W  I  W  Q  K  V  H  S  E  D  D  R  G  F  Q  H  F  L  D  T  V  Q  Y  K  S  N  G  I  L  R  Y  E  R  V  F  G  A  G  F  V  S  T  G  G  I   : D  T  T  K  E  F  V  A  M  M  D  L  Q  P  G  E  K  V  L  D  V  G  C  G  I  G  G  G  D  F  Y  M  A  E  K  Y  D  V  H  V  V  G  I  D  L  S  V  N  M  I  T  L  A  F  E  R  A  I  G  R  K  C  A  V  E  F  E  V  A  D  C  T  V  K  T  Y  P  E  E  S  F  D  V  I  Y  S  R  D  T  I  L  H  I  Q  :  D  K  P  A  L  F  R  S  F  Y  K  W  L  K  P  G  G  R  V  L  I  S  D  Y  C  K  K  A  G  P  A  S  E  D  F  A  A  Y  I  K  Q  R  G  Y  D  L  H  D  V  E  A  Y  G  Q  :  M  L  R  D  A  G  F  N  E  V  I  A  D  D  R  T  E  Q  :  F  M  Q  V  L  Q  K  E  L  D  T  V  E  N  E  R  E  L  F  I  Q  E  F  S  E  :  Q  D  Y  N  D  I  V  G  G  W  K  A  K  L  V  R  S  S  S  G  E  Q  R  W  G  L  F  F  A  K  K  N  *  C  V  L  L  C  T  V  V  S  L  K  I  I  K  M  I  *  V  *  C  C  N  D  S  R  L  Y  P  M  *  T  P  F  I  G  L  H  W  L  C  C  L  F  *  *  F  L  L  C  R  F  N  V  I  C  E  L  V  K  I  M  L  L  I  K  V  C  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34521" stop="34566"/>
                    <exon start="34864" stop="34985"/>
                    <exon start="35164" stop="35301"/>
                    <exon start="35468" stop="35605"/>
                    <exon start="36248" stop="36391"/>
                    <exon start="36559" stop="36669"/>
                    <exon start="36759" stop="36900"/>
                    <exon start="37101" stop="37381"/>
                    <exon start="37515" stop="37676"/>
                    <exon start="37760" stop="37813"/>
                    <exon start="37992" stop="38066"/>
                    <exon start="38151" stop="38249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLTSSASIMAAIAPEVGEEREIQKSYWMEQTSELNLEAMMRDSAASDLDKEDRPEVLSLLPSYEGKSVLELGAGIGRFTGDLAEKAGELVAVDFIEEVTKKNESINGHHKNVKFVCADVTSPDLTVLPESVDLIFSNWLLMYLSNEEVQDLAERMIKWLKVGGYIFFRETCFHQSGDHKGKNNPTHYREPRFYTKVFQECTLKDDAGKSYELSLIGYKCIETYVKNKKNQNEICWIWQKVHSEDDRGFQHFLDTVQYKSNGILRYERVFGAGFVSTGGIDTTKEFVAMMDLQPGEKVLDVGCGIGGGDFYMAEKYDVHVVGIDLSVNMITLAFERAIGRKCAVEFEVADCTVKTYPEESFDVIYSRDTILHIQDKPALFRSFYKWLKPGGRVLISDYCKKAGPASEDFAAYIKQRGYDLHDVEAYGQMLRDAGFNEVIADDRTEQFMQVLQKELDTVENERELFIQEFSEQDYNDIVGGWKAKLVRSSSGEQRWGLFFAKKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34844" e_stop="34985"/>
            <exon e_start="35164" e_stop="35301"/>
            <exon e_start="35468" e_stop="35605"/>
            <exon e_start="36248" e_stop="36391"/>
            <exon e_start="36559" e_stop="36669"/>
            <exon e_start="36759" e_stop="36900"/>
            <exon e_start="37101" e_stop="37381"/>
            <exon e_start="37515" e_stop="37532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.045" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34844" e_stop="34985" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35301" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35468" e_stop="35605" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36248" e_stop="36391" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.918" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36559" e_stop="36669" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36759" e_stop="36900" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37101" e_stop="37381" e_length="281"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.045">
            <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37515" e_stop="37532" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34844" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35605"/>
              <exon start="36248" stop="36329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36276" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36630" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37381"/>
              <exon start="37515" stop="37532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG : GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG : AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG : GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG : GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG : ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG : ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG : GACAAGCCTGCATTATTC</gDNA_template>
            <first_frame> F  *  C  V  V  C  R  G  R  R  R  A  *  D  S  K  E  L  L  D  G  A  N  *  *  T  Q  F  G  G  N  D  A  *  F  C  S  I  *  S  *  Q  R  G  *  A  *   : G  A  F  T  A  P  F  I  *  R  *  I  R  V  G  I  G  C  W  Y  W  P  F  H  W  G  L  S  R  E  G  W  G  A  C  S  S  G  L  Y  *  R  S  D  *  E   : E  *  K  Y  Q  R  A  P  Q  E  C  Q  V  C  V  C  *  C  D  F  T  R  F  D  G  F  T  *  I  S  G  L  D  I  F  *  L  A  T  D  V  S  F  Q  R  R   : G  S  G  P  C  G  E  N  D  Q  M  V  E  S  W  W  L  Y  I  F  *  R  D  M  L  P  S  I  R  R  P  Q  G  K  E  Q  P  N  P  L  S  R  A  S  I  L  Y  K   : G  F  P  R  M  Y  F  K  G  *  C  W  K  I  I  *  T  F  S  Y  W  L  *  V  H  *  N  L  C  K  K  Q  K  E  S  K  *   : D  L  L  D  M  A  E  G  S  F  R  G  *  Q  G  I  P  A  F  L  G  H  C  S  V  Q  V  *  W  Y  T  E  I  *  T  C  V  R  G  R  L  C  Q  H  R  R  N  * :   H  H  Q  R  I  R  C  H  D  G  S  S  A  W  R  K  G  P  *  R  W  L  W  H  W  R  R  *  L  L  H  G  *  E  V  *  C  S  C  C  R  H  *  S  F  S  *  H  D  H  I  G  F  *  T  C  Y  W  A  Q  M  R  G  *  I  *  G  C  *  L  H  G  E  N  I  S  *  R  I  I  R  C  D  I  Q  P  G  H  Y  P  A  H  P   : G  Q  A  C  I  I  </first_frame>
            <second_frame>  F  N  V  L  C  V  E  V  G  E  E  R  E  I  Q  K  S  Y  W  M  E  Q  T  S  E  L  N  L  E  A  M  M  R  D  S  A  A  S  D  L  D  K  E  D  R  P  E  :  V  L  S  L  L  P  S  Y  E  G  K  S  V  L  E  L  G  A  G  I  G  R  F  T  G  D  L  A  E  K  A  G  E  L  V  A  V  D  F  I  E  E  V  T  K  K  :  N  E  S  I  N  G  H  H  K  N  V  K  F  V  C  A  D  V  T  S  P  D  L  T  V  L  P  E  S  V  D  L  I  F  S  N  W  L  L  M  Y  L  S  N  E  E  :  V  Q  D  L  A  E  R  M  I  K  W  L  K  V  G  G  Y  I  F  F  R  E  T  C  F  H  Q  S  G  D  H  K  G  K  N  N  P  T  H  Y  R  E  P  R  F  Y  T  K  :  V  F  Q  E  C  T  L  K  D  D  A  G  K  S  Y  E  L  S  L  I  G  Y  K  C  I  E  T  Y  V  K  N  K  K  N  Q  N  E  :  I  C  W  I  W  Q  K  V  H  S  E  D  D  R  G  F  Q  H  F  L  D  T  V  Q  Y  K  S  N  G  I  L  R  Y  E  R  V  F  G  A  G  F  V  S  T  G  G  I   : D  T  T  K  E  F  V  A  M  M  D  L  Q  P  G  E  K  V  L  D  V  G  C  G  I  G  G  G  D  F  Y  M  A  E  K  Y  D  V  H  V  V  G  I  D  L  S  V  N  M  I  T  L  A  F  E  R  A  I  G  R  K  C  A  V  E  F  E  V  A  D  C  T  V  K  T  Y  P  E  E  S  F  D  V  I  Y  S  R  D  T  I  L  H  I  Q  :  D  K  P  A  L  F </second_frame>
            <third_frame>   L  M  C  C  V  *  R  *  E  K  S  V  R  F  K  R  V  I  G  W  S  K  L  V  N  S  I  W  R  Q  *  C  V  I  L  Q  H  L  I  L  T  K  R  I  G  L  R :   C  F  H  C  S  L  H  M  K  V  N  P  C  W  N  W  V  L  V  L  A  V  S  L  G  T  *  P  R  R  L  G  S  L  *  Q  W  T  L  L  K  K  *  L  R  R :   M  K  V  S  T  G  T  T  R  M  S  S  L  C  V  L  M  *  L  H  Q  I  *  R  F  Y  L  N  Q  W  T  *  Y  F  L  T  G  Y  *  C  I  F  P  T  K  R :   F  R  T  L  R  R  E  *  S  N  G  *  K  L  V  A  I  Y  F  L  E  R  H  A  S  I  N  Q  E  T  T  R  E  R  T  T  Q  P  T  I  E  S  L  D  F  I  Q  R :   F  S  K  N  V  L  *  R  M  M  L  E  N  H  M  N  F  L  L  L  V  I  S  A  L  K  L  M  *  K  T  K  R  I  K  M  R :   F  A  G  Y  G  R  R  F  I  P  R  M  T  G  D  S  S  I  S  W  T  L  F  S  T  S  L  M  V  Y  *  D  M  N  V  C  S  G  Q  A  L  S  A  Q  E  E  L  :  T  P  P  K  N  S  L  P  *  W  I  F  S  L  A  K  R  S  L  T  L  A  V  A  L  E  E  V  T  F  T  W  L  R  S  M  M  F  M  L  *  A  L  I  F  Q  L  T  *  S  H  W  L  L  N  V  L  L  G  A  N  A  R  L  N  L  R  L  L  I  A  R  *  K  H  I  L  K  N  H  S  M  *  Y  T  A  G  T  L  S  C  T  S  R :   T  S  L  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34845" stop="34985"/>
                    <exon start="35164" stop="35301"/>
                    <exon start="35468" stop="35605"/>
                    <exon start="36248" stop="36391"/>
                    <exon start="36559" stop="36669"/>
                    <exon start="36759" stop="36900"/>
                    <exon start="37101" stop="37381"/>
                    <exon start="37515" stop="37532"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNVLCVEVGEEREIQKSYWMEQTSELNLEAMMRDSAASDLDKEDRPEVLSLLPSYEGKSVLELGAGIGRFTGDLAEKAGELVAVDFIEEVTKKNESINGHHKNVKFVCADVTSPDLTVLPESVDLIFSNWLLMYLSNEEVQDLAERMIKWLKVGGYIFFRETCFHQSGDHKGKNNPTHYREPRFYTKVFQECTLKDDAGKSYELSLIGYKCIETYVKNKKNQNEICWIWQKVHSEDDRGFQHFLDTVQYKSNGILRYERVFGAGFVSTGGIDTTKEFVAMMDLQPGEKVLDVGCGIGGGDFYMAEKYDVHVVGIDLSVNMITLAFERAIGRKCAVEFEVADCTVKTYPEESFDVIYSRDTILHIQDKPALF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34456" e_stop="34582"/>
            <exon e_start="34864" e_stop="34985"/>
            <exon e_start="35164" e_stop="35301"/>
            <exon e_start="35468" e_stop="35605"/>
            <exon e_start="36248" e_stop="36391"/>
            <exon e_start="36559" e_stop="36669"/>
            <exon e_start="36759" e_stop="36900"/>
            <exon e_start="37101" e_stop="37381"/>
            <exon e_start="37515" e_stop="37532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.827"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="0.967"/>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="0.957"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="0.974"/>
          <exon-intron don_prob="0.918" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.045" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.827">
            <gDNA_exon_boundary e_start="34456" e_stop="34582" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34583" i_stop="34863" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="34864" e_stop="34985" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="35164" e_stop="35301" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="35468" e_stop="35605" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36248" e_stop="36391" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36559" e_stop="36669" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36759" e_stop="36900" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37101" e_stop="37381" e_length="281"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.045">
            <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="37515" e_stop="37532" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34456" stop="34582"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36276" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36630" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37381"/>
              <exon start="37515" stop="37532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCG : AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG : GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG : AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG : GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG : GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG : ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG : ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG : GACAAGCCTGCATTATTC</gDNA_template>
            <first_frame> Q  Q  R  G  R  I  S  N  C  K  S  R  S  F  S  R  S  R  L  A  V  E  G  S  *  P  L  Q  L  L  S  W  L  P  L  L  Q  V  I  N  V  L   : E  V  G  E  E  R  E  I  Q  K  S  Y  W  M  E  Q  T  S  E  L  N  L  E  A  M  M  R  D  S  A  A  S  D  L  D  K  E  D  R  P  E  :  V  L  S  L  L  P  S  Y  E  G  K  S  V  L  E  L  G  A  G  I  G  R  F  T  G  D  L  A  E  K  A  G  E  L  V  A  V  D  F  I  E  E  V  T  K  K  :  N  E  S  I  N  G  H  H  K  N  V  K  F  V  C  A  D  V  T  S  P  D  L  T  V  L  P  E  S  V  D  L  I  F  S  N  W  L  L  M  Y  L  S  N  E  E  :  V  Q  D  L  A  E  R  M  I  K  W  L  K  V  G  G  Y  I  F  F  R  E  T  C  F  H  Q  S  G  D  H  K  G  K  N  N  P  T  H  Y  R  E  P  R  F  Y  T  K  :  V  F  Q  E  C  T  L  K  D  D  A  G  K  S  Y  E  L  S  L  I  G  Y  K  C  I  E  T  Y  V  K  N  K  K  N  Q  N  E  :  I  C  W  I  W  Q  K  V  H  S  E  D  D  R  G  F  Q  H  F  L  D  T  V  Q  Y  K  S  N  G  I  L  R  Y  E  R  V  F  G  A  G  F  V  S  T  G  G  I   : D  T  T  K  E  F  V  A  M  M  D  L  Q  P  G  E  K  V  L  D  V  G  C  G  I  G  G  G  D  F  Y  M  A  E  K  Y  D  V  H  V  V  G  I  D  L  S  V  N  M  I  T  L  A  F  E  R  A  I  G  R  K  C  A  V  E  F  E  V  A  D  C  T  V  K  T  Y  P  E  E  S  F  D  V  I  Y  S  R  D  T  I  L  H  I  Q  :  D  K  P  A  L  F </first_frame>
            <second_frame>  S  R  E  V  E  L  V  I  V  N  Q  G  P  F  L  D  L  V  L  L  L  K  V  L  N  L  F  S  F  Y  H  G  C  H  C  S  R  *  S  M  F  S  :  R  *  E  K  S  V  R  F  K  R  V  I  G  W  S  K  L  V  N  S  I  W  R  Q  *  C  V  I  L  Q  H  L  I  L  T  K  R  I  G  L  R :   C  F  H  C  S  L  H  M  K  V  N  P  C  W  N  W  V  L  V  L  A  V  S  L  G  T  *  P  R  R  L  G  S  L  *  Q  W  T  L  L  K  K  *  L  R  R :   M  K  V  S  T  G  T  T  R  M  S  S  L  C  V  L  M  *  L  H  Q  I  *  R  F  Y  L  N  Q  W  T  *  Y  F  L  T  G  Y  *  C  I  F  P  T  K  R :   F  R  T  L  R  R  E  *  S  N  G  *  K  L  V  A  I  Y  F  L  E  R  H  A  S  I  N  Q  E  T  T  R  E  R  T  T  Q  P  T  I  E  S  L  D  F  I  Q  R :   F  S  K  N  V  L  *  R  M  M  L  E  N  H  M  N  F  L  L  L  V  I  S  A  L  K  L  M  *  K  T  K  R  I  K  M  R :   F  A  G  Y  G  R  R  F  I  P  R  M  T  G  D  S  S  I  S  W  T  L  F  S  T  S  L  M  V  Y  *  D  M  N  V  C  S  G  Q  A  L  S  A  Q  E  E  L  :  T  P  P  K  N  S  L  P  *  W  I  F  S  L  A  K  R  S  L  T  L  A  V  A  L  E  E  V  T  F  T  W  L  R  S  M  M  F  M  L  *  A  L  I  F  Q  L  T  *  S  H  W  L  L  N  V  L  L  G  A  N  A  R  L  N  L  R  L  L  I  A  R  *  K  H  I  L  K  N  H  S  M  *  Y  T  A  G  T  L  S  C  T  S  R :   T  S  L  H  Y   </second_frame>
            <third_frame>   A  E  R  *  N  *  *  L  *  I  K  V  L  F  *  I  S  S  C  C  *  R  F  L  T  S  S  A  S  I  M  A  A  I  A  P  G  N  Q  C  S  R :   G  R  R  R  A  *  D  S  K  E  L  L  D  G  A  N  *  *  T  Q  F  G  G  N  D  A  *  F  C  S  I  *  S  *  Q  R  G  *  A  *   : G  A  F  T  A  P  F  I  *  R  *  I  R  V  G  I  G  C  W  Y  W  P  F  H  W  G  L  S  R  E  G  W  G  A  C  S  S  G  L  Y  *  R  S  D  *  E   : E  *  K  Y  Q  R  A  P  Q  E  C  Q  V  C  V  C  *  C  D  F  T  R  F  D  G  F  T  *  I  S  G  L  D  I  F  *  L  A  T  D  V  S  F  Q  R  R   : G  S  G  P  C  G  E  N  D  Q  M  V  E  S  W  W  L  Y  I  F  *  R  D  M  L  P  S  I  R  R  P  Q  G  K  E  Q  P  N  P  L  S  R  A  S  I  L  Y  K   : G  F  P  R  M  Y  F  K  G  *  C  W  K  I  I  *  T  F  S  Y  W  L  *  V  H  *  N  L  C  K  K  Q  K  E  S  K  *   : D  L  L  D  M  A  E  G  S  F  R  G  *  Q  G  I  P  A  F  L  G  H  C  S  V  Q  V  *  W  Y  T  E  I  *  T  C  V  R  G  R  L  C  Q  H  R  R  N  * :   H  H  Q  R  I  R  C  H  D  G  S  S  A  W  R  K  G  P  *  R  W  L  W  H  W  R  R  *  L  L  H  G  *  E  V  *  C  S  C  C  R  H  *  S  F  S  *  H  D  H  I  G  F  *  T  C  Y  W  A  Q  M  R  G  *  I  *  G  C  *  L  H  G  E  N  I  S  *  R  I  I  R  C  D  I  Q  P  G  H  Y  P  A  H  P   : G  Q  A  C  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34531" stop="34582"/>
                    <exon start="34864" stop="34985"/>
                    <exon start="35164" stop="35301"/>
                    <exon start="35468" stop="35605"/>
                    <exon start="36248" stop="36391"/>
                    <exon start="36559" stop="36669"/>
                    <exon start="36759" stop="36900"/>
                    <exon start="37101" stop="37381"/>
                    <exon start="37515" stop="37532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLQLLSWLPLLQVINVLEVGEEREIQKSYWMEQTSELNLEAMMRDSAASDLDKEDRPEVLSLLPSYEGKSVLELGAGIGRFTGDLAEKAGELVAVDFIEEVTKKNESINGHHKNVKFVCADVTSPDLTVLPESVDLIFSNWLLMYLSNEEVQDLAERMIKWLKVGGYIFFRETCFHQSGDHKGKNNPTHYREPRFYTKVFQECTLKDDAGKSYELSLIGYKCIETYVKNKKNQNEICWIWQKVHSEDDRGFQHFLDTVQYKSNGILRYERVFGAGFVSTGGIDTTKEFVAMMDLQPGEKVLDVGCGIGGGDFYMAEKYDVHVVGIDLSVNMITLAFERAIGRKCAVEFEVADCTVKTYPEESFDVIYSRDTILHIQDKPALF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="34450" e_stop="34566"/>
            <exon e_start="34864" e_stop="34985"/>
            <exon e_start="35164" e_stop="35301"/>
            <exon e_start="35468" e_stop="35605"/>
            <exon e_start="36248" e_stop="36391"/>
            <exon e_start="36559" e_stop="36651"/>
            <exon e_start="37636" e_stop="37676"/>
            <exon e_start="37760" e_stop="37801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34450" e_stop="34566" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34864" e_stop="34985" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35301" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35468" e_stop="35605" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36248" e_stop="36391" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36559" e_stop="36651" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36652" i_stop="37635" i_length="984"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37636" e_stop="37676" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37677" i_stop="37759" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37760" e_stop="37801" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34450" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34450" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35524" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36651"/>
              <exon start="37636" stop="37676"/>
              <exon start="37760" stop="37801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG : AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG : GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG : AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG : GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG : GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAAC : AAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAG : ATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGAT</gDNA_template>
            <first_frame> L  M  Q  Q  R  G  R  I  S  N  C  K  S  R  S  F  S  R  S  R  L  A  V  E  G  S  *  P  L  Q  L  L  S  W  L  P  L  L  Q  :  R  *  E  K  S  V  R  F  K  R  V  I  G  W  S  K  L  V  N  S  I  W  R  Q  *  C  V  I  L  Q  H  L  I  L  T  K  R  I  G  L  R :   C  F  H  C  S  L  H  M  K  V  N  P  C  W  N  W  V  L  V  L  A  V  S  L  G  T  *  P  R  R  L  G  S  L  *  Q  W  T  L  L  K  K  *  L  R  R :   M  K  V  S  T  G  T  T  R  M  S  S  L  C  V  L  M  *  L  H  Q  I  *  R  F  Y  L  N  Q  W  T  *  Y  F  L  T  G  Y  *  C  I  F  P  T  K  R :   F  R  T  L  R  R  E  *  S  N  G  *  K  L  V  A  I  Y  F  L  E  R  H  A  S  I  N  Q  E  T  T  R  E  R  T  T  Q  P  T  I  E  S  L  D  F  I  Q  R :   F  S  K  N  V  L  *  R  M  M  L  E  N  H  M  N  F  L  L  L  V  I  S  A  L  K  L  M  *  K  T :   K  R  L  R  F  T  *  C  *  S  I  W  T   : D  A  *  R  C  W  F  Q  R  S  Y  C  *  *  </first_frame>
            <second_frame>  *  C  S  R  E  V  E  L  V  I  V  N  Q  G  P  F  L  D  L  V  L  L  L  K  V  L  N  L  F  S  F  Y  H  G  C  H  C  S  R :   G  R  R  R  A  *  D  S  K  E  L  L  D  G  A  N  *  *  T  Q  F  G  G  N  D  A  *  F  C  S  I  *  S  *  Q  R  G  *  A  *   : G  A  F  T  A  P  F  I  *  R  *  I  R  V  G  I  G  C  W  Y  W  P  F  H  W  G  L  S  R  E  G  W  G  A  C  S  S  G  L  Y  *  R  S  D  *  E   : E  *  K  Y  Q  R  A  P  Q  E  C  Q  V  C  V  C  *  C  D  F  T  R  F  D  G  F  T  *  I  S  G  L  D  I  F  *  L  A  T  D  V  S  F  Q  R  R   : G  S  G  P  C  G  E  N  D  Q  M  V  E  S  W  W  L  Y  I  F  *  R  D  M  L  P  S  I  R  R  P  Q  G  K  E  Q  P  N  P  L  S  R  A  S  I  L  Y  K   : G  F  P  R  M  Y  F  K  G  *  C  W  K  I  I  *  T  F  S  Y  W  L  *  V  H  *  N  L  C  K  K   : Q  R  G  Y  D  L  H  D  V  E  A  Y  G  Q  :  M  L  R  D  A  G  F  N  E  V  I  A  D  D </second_frame>
            <third_frame>   D  A  A  E  R  *  N  *  *  L  *  I  K  V  L  F  *  I  S  S  C  C  *  R  F  L  T  S  S  A  S  I  M  A  A  I  A  P   : E  V  G  E  E  R  E  I  Q  K  S  Y  W  M  E  Q  T  S  E  L  N  L  E  A  M  M  R  D  S  A  A  S  D  L  D  K  E  D  R  P  E  :  V  L  S  L  L  P  S  Y  E  G  K  S  V  L  E  L  G  A  G  I  G  R  F  T  G  D  L  A  E  K  A  G  E  L  V  A  V  D  F  I  E  E  V  T  K  K  :  N  E  S  I  N  G  H  H  K  N  V  K  F  V  C  A  D  V  T  S  P  D  L  T  V  L  P  E  S  V  D  L  I  F  S  N  W  L  L  M  Y  L  S  N  E  E  :  V  Q  D  L  A  E  R  M  I  K  W  L  K  V  G  G  Y  I  F  F  R  E  T  C  F  H  Q  S  G  D  H  K  G  K  N  N  P  T  H  Y  R  E  P  R  F  Y  T  K  :  V  F  Q  E  C  T  L  K  D  D  A  G  K  S  Y  E  L  S  L  I  G  Y  K  C  I  E  T  Y  V  K  N  :  K  E  A  T  I  Y  M  M  L  K  H  M  D  R :   C  L  E  M  L  V  S  T  K  L  L  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34521" stop="34566"/>
                    <exon start="34864" stop="34985"/>
                    <exon start="35164" stop="35301"/>
                    <exon start="35468" stop="35605"/>
                    <exon start="36248" stop="36391"/>
                    <exon start="36559" stop="36651"/>
                    <exon start="37636" stop="37676"/>
                    <exon start="37760" stop="37799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLTSSASIMAAIAPEVGEEREIQKSYWMEQTSELNLEAMMRDSAASDLDKEDRPEVLSLLPSYEGKSVLELGAGIGRFTGDLAEKAGELVAVDFIEEVTKKNESINGHHKNVKFVCADVTSPDLTVLPESVDLIFSNWLLMYLSNEEVQDLAERMIKWLKVGGYIFFRETCFHQSGDHKGKNNPTHYREPRFYTKVFQECTLKDDAGKSYELSLIGYKCIETYVKNKEATIYMMLKHMDRCLEMLVSTKLLLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="34459" e_stop="34566"/>
            <exon e_start="34864" e_stop="34985"/>
            <exon e_start="35164" e_stop="35333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="34459" e_stop="34566" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34864" e_stop="34985" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="35164" e_stop="35333" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34459" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279160" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG : AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG : GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTG</gDNA_template>
            <first_frame> Q  R  G  R  I  S  N  C  K  S  R  S  F  S  R  S  R  L  A  V  E  G  S  *  P  L  Q  L  L  S  W  L  P  L  L  Q  :  R  *  E  K  S  V  R  F  K  R  V  I  G  W  S  K  L  V  N  S  I  W  R  Q  *  C  V  I  L  Q  H  L  I  L  T  K  R  I  G  L  R :   C  F  H  C  S  L  H  M  K  V  N  P  C  W  N  W  V  L  V  L  A  V  S  L  G  T  *  P  R  R  L  G  S  L  *  Q  W  T  L  L  K  K  *  L  R  R  F  C  G  F  F  Y  F  G  A  F  </first_frame>
            <second_frame>  R  E  V  E  L  V  I  V  N  Q  G  P  F  L  D  L  V  L  L  L  K  V  L  N  L  F  S  F  Y  H  G  C  H  C  S  R :   G  R  R  R  A  *  D  S  K  E  L  L  D  G  A  N  *  *  T  Q  F  G  G  N  D  A  *  F  C  S  I  *  S  *  Q  R  G  *  A  *   : G  A  F  T  A  P  F  I  *  R  *  I  R  V  G  I  G  C  W  Y  W  P  F  H  W  G  L  S  R  E  G  W  G  A  C  S  S  G  L  Y  *  R  S  D  *  E  G  F  V  A  F  F  T  L  G  P  L </second_frame>
            <third_frame>   E  R  *  N  *  *  L  *  I  K  V  L  F  *  I  S  S  C  C  *  R  F  L  T  S  S  A  S  I  M  A  A  I  A  P   : E  V  G  E  E  R  E  I  Q  K  S  Y  W  M  E  Q  T  S  E  L  N  L  E  A  M  M  R  D  S  A  A  S  D  L  D  K  E  D  R  P  E  :  V  L  S  L  L  P  S  Y  E  G  K  S  V  L  E  L  G  A  G  I  G  R  F  T  G  D  L  A  E  K  A  G  E  L  V  A  V  D  F  I  E  E  V  T  K  K  V  L  W  L  F  L  L  W  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34521" stop="34566"/>
                    <exon start="34864" stop="34985"/>
                    <exon start="35164" stop="35331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLTSSASIMAAIAPEVGEEREIQKSYWMEQTSELNLEAMMRDSAASDLDKEDRPEVLSLLPSYEGKSVLELGAGIGRFTGDLAEKAGELVAVDFIEEVTKKVLWLFLLWGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41209" PGL_stop="41880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41209" e_stop="41880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41209" e_stop="41880" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41209" stop="41880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41210" stop="41618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41368" stop="41827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612594" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATCGTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTTGTACGTAGATCTCGTTCATTTTAATTTATGTGATAATTTTTATTTGTGTTAAT</gDNA_template>
            <first_frame> H  N  R  K  K  W  L  P  K  V  P  S  P  A  F  T  F  K  T  W  K  K  *  K  K  Y  S  H  A  S  T  R  M  A  T  A  *  S  P  A  T  N  F  P  A  Y  *  K  P  *  D  P  T  L  R  R  K  K  L  H  V  *  W  P  K  L  I  P  I  R  T  V  A  L  T  *  M  N  L  Q  I  F  A  K  T  T  N  P  S  T  A  A  L  R  N  *  R  K  R  L  I  F  T  I  R  I  I  T  E  G  F  L  L  R  N  F  I  R  S  *  T  A  W  A  R  I  V  P  F  R  I  V  P  E  *  S  R  P  L  M  Q  T  V  T  V  T  F  A  L  K  S  L  R  R  *  W  V  I  N  K  S  F  Y  R  K  F  Y  S  Y  L  S  G  *  *  R  W  G  T  P  D  I  C  A  S  S  C  S  V  *  L  C  G  L  I  N  S  K  T  L  A  F  H  R  L  L  F  C  T  *  I  S  F  I  L  I  Y  V  I  I  F  I  C  V  N </first_frame>
            <second_frame>  T  I  G  K  N  G  Y  R  R  S  Q  A  L  R  L  P  S  R  H  G  R  S  E  K  S  I  R  T  L  R  R  E  W  R  R  H  D  L  R  R  R  T  F  R  R  T  E  S  P  R  I  R  H  F  A  G  R  S  C  T  Y  D  G  R  N  *  Y  R  *  G  R  L  H  *  P  R  *  I  C  R  F  L  Q  K  R  R  I  R  R  R  R  R  *  G  T  E  G  S  V  *  S  L  R  S  G  S  *  R  K  D  F  C  Y  G  T  S  S  D  P  E  P  L  G  P  E  L  Y  P  S  G  L  Y  Q  N  D  H  V  R  *  C  K  R  *  R  L  R  L  L  *  R  V  *  E  D  D  G  *  *  I  N  H  F  I  V  S  F  T  V  I  *  V  A  D  N  G  G  V  H  R  I  F  V  R  P  P  V  V  Y  N  F  V  V  *  *  I  A  R  P  *  L  S  I  A  F  Y  F  V  R  R  S  R  S  F  *  F  M  *  *  F  L  F  V  L   </second_frame>
            <third_frame>   Q  S  E  K  M  A  T  E  G  P  K  P  C  V  Y  L  Q  D  M  E  E  V  K  K  V  F  A  R  F  D  A  N  G  D  G  M  I  S  G  D  E  L  S  G  V  L  K  A  L  G  S  D  T  S  P  E  E  V  A  R  M  M  A  E  I  D  T  D  K  D  G  C  I  N  L  D  E  F  A  D  F  C  K  N  D  E  S  V  D  G  G  A  K  E  L  K  E  A  F  D  L  Y  D  Q  D  H  N  G  R  I  S  A  T  E  L  H  Q  I  L  N  R  L  G  Q  N  C  T  L  Q  D  C  T  R  M  I  T  S  V  D  A  N  G  D  G  Y  V  C  F  E  E  F  K  K  M  M  G  N  K  *  I  I  L  S  *  V  L  Q  L  F  E  W  L  I  T  V  G  Y  T  G  Y  L  C  V  L  L  *  C  I  T  L  W  S  N  K  *  Q  D  L  S  F  P  S  P  F  I  L  Y  V  D  L  V  H  F  N  L  C  D  N  F  Y  L  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41211" stop="41687"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSEKMATEGPKPCVYLQDMEEVKKVFARFDANGDGMISGDELSGVLKALGSDTSPEEVARMMAEIDTDKDGCINLDEFADFCKNDESVDGGAKELKEAFDLYDQDHNGRISATELHQILNRLGQNCTLQDCTRMITSVDANGDGYVCFEEFKKMMGNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48757" PGL_stop="47307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48750" e_stop="48704"/>
            <exon e_start="48628" e_stop="48559"/>
            <exon e_start="48151" e_stop="48084"/>
            <exon e_start="47868" e_stop="47807"/>
            <exon e_start="47690" e_stop="47609"/>
            <exon e_start="47500" e_stop="47307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48750" e_stop="48704" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48628" e_stop="48559" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48151" e_stop="48084" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47868" e_stop="47807" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47690" e_stop="47609" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.906">
            <gDNA_intron_boundary i_start="47608" i_stop="47501" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47500" e_stop="47307" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48750" stop="48704"/>
              <exon start="48628" stop="48559"/>
              <exon start="48151" stop="48084"/>
              <exon start="47868" stop="47807"/>
              <exon start="47690" stop="47609"/>
              <exon start="47500" stop="47307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48744" stop="48704"/>
              <exon start="48628" stop="48559"/>
              <exon start="48151" stop="48084"/>
              <exon start="47868" stop="47807"/>
              <exon start="47690" stop="47609"/>
              <exon start="47500" stop="47363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA : GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAG : GAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAG : GTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAG : GATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAG : GCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAACAAAAGTTAACATTCAAAAACTCCCCAGAGAACAGAGGAAAGTGGTGCAATGTTGG</gDNA_template>
            <first_frame> G  Q  L  S  T  P  I  S  W  A  *  P  P  L  L  Q :   W  F  T  N  *  S  F  L  *  S  Q  H  S  S  N  L  I  K  S  Q  I  S  Q  :  E  V  Q  I  S  L  C  L  Q  Y  *  L  *  Y  *  K  V  H  G  I  F  D  R :   W  F  C  L  C  L  S  *  Y  G  A  F  D  W  G  Y  F  Y  *  *   : G  Y  Y  N  G  A  R  I  D  V  L  M  I  S  V  I  I  W  G  N  W  Q  Y  F  G  Y  F  R :   Q  S  G  C  G  L  *  V  Y  Q  *  Q  L  L  M  Q  V  T  T  N  H  L  F  R  R  *  T  S  L  V  G  L  C  G  L  S  E  Y  Q  L  R  S  L  L  T  N  K  S  *  H  S  K  T  P  Q  R  T  E  E  S  G  A  M  L  </first_frame>
            <second_frame>  D  S  Y  R  L  P  F  L  G  P  N  R  H  C  Y   : S  G  L  P  I  N  L  F  Y  N  H  S  T  P  Q  I  *  *  S  H  R  F  R  R :   R  Y  K  F  H  C  A  C  S  I  N  F  D  T  K  R  F  M  E  F  S  T   : G  G  F  V  C  V  C  R  D  M  G  P  S  T  G  A  I  S  I  N  E  :  D  I  T  M  G  R  G  *  T  F  *  *  *  A  *  *  S  G  E  T  G  N  I  L  A  I  S   : G  N  L  G  V  D  C  E  F  T  S  D  S  C  *  C  K  *  P  P  T  I  C  S  D  G  R  H  H  W  L  D  Y  V  V  Y  R  N  I  S  *  D  R  F  *  P  T  K  V  N  I  Q  K  L  P  R  E  Q  R  K  V  V  Q  C  W </second_frame>
            <third_frame>   T  V  I  D  S  H  F  L  G  L  T  A  I  V  T  :  V  V  Y  Q  L  I  F  F  I  I  T  A  L  L  K  F  D  K  V  T  D  F  A   : G  G  T  N  F  I  V  L  A  V  L  T  L  I  L  K  G  S  W  N  F  R  Q  :  V  V  L  S  V  F  V  V  I  W  G  L  R  L  G  L  F  L  L  M  R :   I  L  Q  W  G  E  D  R  R  F  D  D  K  R  D  N  L  G  K  L  A  I  F  W  L  F  Q  :  A  I  W  V  W  T  V  S  L  P  V  T  V  V  N  A  S  D  H  Q  P  S  V  Q  T  V  D  I  I  G  W  I  M  W  S  I  G  I  S  V  E  I  A  S  D  Q  Q  K  L  T  F  K  N  S  P  E  N  R  G  K  W  C  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48748" stop="48704"/>
                    <exon start="48628" stop="48559"/>
                    <exon start="48151" stop="48084"/>
                    <exon start="47868" stop="47807"/>
                    <exon start="47690" stop="47609"/>
                    <exon start="47500" stop="47309"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVIDSHFLGLTAIVTVVYQLIFFIITALLKFDKVTDFAGGTNFIVLAVLTLILKGSWNFRQVVLSVFVVIWGLRLGLFLLMRILQWGEDRRFDDKRDNLGKLAIFWLFQAIWVWTVSLPVTVVNASDHQPSVQTVDIIGWIMWSIGISVEIASDQQKLTFKNSPENRGKWCNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48757" e_stop="48704"/>
            <exon e_start="48628" e_stop="48559"/>
            <exon e_start="48151" e_stop="48084"/>
            <exon e_start="47868" e_stop="47807"/>
            <exon e_start="47690" e_stop="47630"/>
            <exon e_start="47500" e_stop="47494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.963"/>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="0.986"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="1.000" acc_prob="0.906" e_score="0.918"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="48757" e_stop="48704" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="48628" e_stop="48559" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="48151" e_stop="48084" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="47868" e_stop="47807" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.918">
            <gDNA_exon_boundary e_start="47690" e_stop="47630" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.906">
            <gDNA_intron_boundary i_start="47629" i_stop="47501" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.857">
            <gDNA_exon_boundary e_start="47500" e_stop="47494" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48757" stop="48704"/>
              <exon start="48628" stop="48559"/>
              <exon start="48151" stop="48084"/>
              <exon start="47868" stop="47807"/>
              <exon start="47690" stop="47630"/>
              <exon start="47500" stop="47494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATGGGGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA : GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAG : GAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAG : GTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAG : GATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTG : GCAATCT</gDNA_template>
            <first_frame> *  M  G  T  V  I  D  S  H  F  L  G  L  T  A  I  V  T  :  V  V  Y  Q  L  I  F  F  I  I  T  A  L  L  K  F  D  K  V  T  D  F  A   : G  G  T  N  F  I  V  L  A  V  L  T  L  I  L  K  G  S  W  N  F  R  Q  :  V  V  L  S  V  F  V  V  I  W  G  L  R  L  G  L  F  L  L  M  R :   I  L  Q  W  G  E  D  R  R  F  D  D  K  R  D  N  L  G  K  L  :  A  I  </first_frame>
            <second_frame>  E  W  G  Q  L  S  T  P  I  S  W  A  *  P  P  L  L  Q :   W  F  T  N  *  S  F  L  *  S  Q  H  S  S  N  L  I  K  S  Q  I  S  Q  :  E  V  Q  I  S  L  C  L  Q  Y  *  L  *  Y  *  K  V  H  G  I  F  D  R :   W  F  C  L  C  L  S  *  Y  G  A  F  D  W  G  Y  F  Y  *  *   : G  Y  Y  N  G  A  R  I  D  V  L  M  I  S  V  I  I  W  G  N  W :   Q  S </second_frame>
            <third_frame>   N  G  D  S  Y  R  L  P  F  L  G  P  N  R  H  C  Y   : S  G  L  P  I  N  L  F  Y  N  H  S  T  P  Q  I  *  *  S  H  R  F  R  R :   R  Y  K  F  H  C  A  C  S  I  N  F  D  T  K  R  F  M  E  F  S  T   : G  G  F  V  C  V  C  R  D  M  G  P  S  T  G  A  I  S  I  N  E  :  D  I  T  M  G  R  G  *  T  F  *  *  *  A  *  *  S  G  E  T   : G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48754" stop="48704"/>
                    <exon start="48628" stop="48559"/>
                    <exon start="48151" stop="48084"/>
                    <exon start="47868" stop="47807"/>
                    <exon start="47690" stop="47630"/>
                    <exon start="47500" stop="47495"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGTVIDSHFLGLTAIVTVVYQLIFFIITALLKFDKVTDFAGGTNFIVLAVLTLILKGSWNFRQVVLSVFVVIWGLRLGLFLLMRILQWGEDRRFDDKRDNLGKLAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51913" PGL_stop="49128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51913" e_stop="51813"/>
            <exon e_start="51647" e_stop="51569"/>
            <exon e_start="51472" e_stop="51374"/>
            <exon e_start="51280" e_stop="51212"/>
            <exon e_start="50281" e_stop="50232"/>
            <exon e_start="50049" e_stop="49873"/>
            <exon e_start="49613" e_stop="49128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.488" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51913" e_stop="51813" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51812" i_stop="51648" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51647" e_stop="51569" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51568" i_stop="51473" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51472" e_stop="51374" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.488" acc_prob="0.968">
            <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="51212" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50281" e_stop="50232" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.901">
            <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50049" e_stop="49873" e_length="177"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49613" e_stop="49128" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51913" stop="51813"/>
              <exon start="51647" stop="51569"/>
              <exon start="51472" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51439" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51382" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51382" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51382" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51381" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51246" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50235" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCGGATCATGAAAAGGCTCAGACATCCAAATGTTGTTCTGTTCATGGGAGCTGTTACTCGTTCTCCACATCTTTCAATTGTTACTGAGTTTCTTCATAG : AGGAAGTTTGTACAGATTAATCCATCGACCCAACAATCAGTTAGATGAGCGCAGAAGGTTGAGGATGGCTCTTGATGCT : GCTCGAGGAATGAACTATTTACACAACTGCACTCCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAG : GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG : GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA : ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC : AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAGA</gDNA_template>
            <first_frame> V  R  I  M  K  R  L  R  H  P  N  V  V  L  F  M  G  A  V  T  R  S  P  H  L  S  I  V  T  E  F  L  H  R :   G  S  L  Y  R  L  I  H  R  P  N  N  Q  L  D  E  R  R  R  L  R  M  A  L  D  A  :  A  R  G  M  N  Y  L  H  N  C  T  P  M  I  V  H  R  D  L  K  S  P  N  L  L  V  D  K  N  W  V  V  K  :  V  C  D  F  G  L  S  R  M  K  H  S  T  F  L  S  S  R  S  T  A  G  T  :  A  E  W  M  A  P  E  V  L  R  N  E  P  S  N  E  K :   C  D  V  Y  S  F  G  V  I  L  W  E  L  C  T  L  Q  Q  P  W  G  G  M  N  P  M  Q  V  V  G  A  V  G  F  Q  H  R  R  L  D  I  P  D  D  T  D  P  A  I  A  D  I  I  R  K  C  W  Q  T :   D  P  K  L  R  P  S  F  T  E  I  M  A  A  L  K  P  L  Q  K  P  I  T  S  S  H  A  P  K  P  P  V  A  R  G  Q  P  S  *  I  L  E  D  A  S  A  E  Q  G  *  Y  *  R  T  *  I  D  V  F  F  V  E  F  K  Q  V  R  I  *  A  Q  E  A  E  R  R  H  Q  R  T  *  Q  S  D  T  S  F  *  A  K  L  *  F  F  C  *  Q  C  F  P  S  P  Q  K  L  C  I  C  L  P  L  C  I  H  I  D  S  L  F  C  N  *  K  K  R  R  K  N  C  F  K  G  A  Q  A  P  L  L  S  M  F  *  V  N  I  Y  I  L  Y  L  F  Y  *  N  M  C  K  Y  S  S  *   </first_frame>
            <second_frame>  C  G  S  *  K  G  S  D  I  Q  M  L  F  C  S  W  E  L  L  L  V  L  H  I  F  Q  L  L  L  S  F  F  I   : E  E  V  C  T  D  *  S  I  D  P  T  I  S  *  M  S  A  E  G  *  G  W  L  L  M  L :   L  E  E  *  T  I  Y  T  T  A  L  Q  *  *  F  I  E  I  *  S  H  Q  I  S  *  *  I  R  T  G  L  *  R :   Y  V  I  L  D  C  Q  E  *  S  T  A  H  F  F  L  L  G  L  L  L  G  R :   Q  S  G  W  P  Q  K  C  *  E  M  N  L  Q  M  K   : N  V  M  Y  I  A  S  V  S  Y  Y  G  S  S  V  L  Y  S  N  H  G  E  E  *  I  Q  C  K  S  L  A  L  W  G  F  S  T  V  V  L  T  Y  Q  M  T  R  I  Q  L  L  Q  T  L  S  G  N  A  G  K   : Q  I  Q  S  Y  G  L  H  L  L  R  *  W  L  L  *  N  H  Y  K  S  L  L  L  V  H  M  H  Q  N  H  Q  L  P  E  A  N  H  R  E  S  *  K  M  H  P  R  S  R  V  N  T  E  E  R  K  *  T  Y  F  S  L  N  L  N  R  S  E  F  E  L  K  K  L  K  E  D  I  K  E  P  D  S  Q  I  L  H  F  K  P  N  C  D  S  F  V  S  S  V  S  L  V  L  K  N  C  V  S  A  F  P  C  V  F  I  L  I  P  S  F  V  I  K  K  K  E  E  R  I  A  L  K  E  L  K  L  L  F  Y  L  C  F  R  S  T  F  I  F  C  T  Y  F  I  E  T  C  A  N  I  A  L  E  </second_frame>
            <third_frame>   A  D  H  E  K  A  Q  T  S  K  C  C  S  V  H  G  S  C  Y  S  F  S  T  S  F  N  C  Y  *  V  S  S  *  :  R  K  F  V  Q  I  N  P  S  T  Q  Q  S  V  R  *  A  Q  K  V  E  D  G  S  *  C   : C  S  R  N  E  L  F  T  Q  L  H  S  N  D  S  S  S  R  F  E  V  T  K  S  P  S  R  *  E  L  G  C  E   : G  M  *  F  W  T  V  K  N  E  A  Q  H  I  S  F  F  *  V  Y  C  W  D   : G  R  V  D  G  P  R  S  A  E  K  *  T  F  K  *  K  :  M  *  C  I  *  L  R  C  H  T  M  G  A  L  Y  F  T  A  T  M  G  R  N  E  S  N  A  S  R  W  R  C  G  V  S  A  P  S  S  *  H  T  R  *  H  G  S  S  Y  C  R  H  Y  Q  E  M  L  A  N  :  R  S  K  V  T  A  F  I  Y  *  D  N  G  C  S  E  T  T  T  K  A  Y  Y  *  F  T  C  T  K  T  T  S  C  Q  R  P  T  I  V  N  L  R  R  C  I  R  G  A  G  L  I  L  K  N  V  N  R  R  I  F  R  *  I  *  T  G  P  N  L  S  S  R  S  *  K  K  T  S  K  N  L  T  V  R  Y  F  I  L  S  Q  I  V  I  L  L  L  A  V  F  P  *  S  S  K  I  V  Y  L  P  S  L  V  Y  S  Y  *  F  P  L  L  *  L  K  K  K  K  K  E  L  L  *  R  S  S  S  S  S  F  I  Y  V  L  G  Q  H  L  Y  F  V  P  I  L  L  K  H  V  Q  I  *  L  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51913" stop="51813"/>
                    <exon start="51647" stop="51569"/>
                    <exon start="51472" stop="51374"/>
                    <exon start="51280" stop="51212"/>
                    <exon start="50281" stop="50232"/>
                    <exon start="50049" stop="49873"/>
                    <exon start="49613" stop="49496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRIMKRLRHPNVVLFMGAVTRSPHLSIVTEFLHRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCTPMIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELCTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDTDPAIADIIRKCWQTDPKLRPSFTEIMAALKPLQKPITSSHAPKPPVARGQPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49443" stop="49129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYFSLNLNRSEFELKKLKEDIKEPDSQILHFKPNCDSFVSSVSLVLKNCVSAFPCVFILIPSFVIKKKEERIALKELKLLFYLCFRSTFIFCTYFIETCANIALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="58304" PGL_stop="53558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58304" e_stop="58239"/>
            <exon e_start="56890" e_stop="56453"/>
            <exon e_start="55799" e_stop="55699"/>
            <exon e_start="54820" e_stop="54556"/>
            <exon e_start="54480" e_stop="53829"/>
            <exon e_start="53720" e_stop="53558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.339" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="0.992"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58304" e_stop="58239" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.840">
            <gDNA_intron_boundary i_start="58238" i_stop="56891" i_length="1348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56890" e_stop="56453" e_length="438"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56452" i_stop="55800" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55799" e_stop="55699" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.339" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55698" i_stop="54821" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54820" e_stop="54556" e_length="265"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54555" i_stop="54481" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="54480" e_stop="53829" e_length="652"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="53828" i_stop="53721" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.939">
            <gDNA_exon_boundary e_start="53720" e_stop="53558" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58304" stop="58239"/>
              <exon start="56890" stop="56453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56571" stop="56453"/>
              <exon start="55799" stop="55699"/>
              <exon start="54820" stop="54556"/>
              <exon start="54480" stop="54386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54475" stop="53829"/>
              <exon start="53720" stop="53558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATCAGTTTAGGCTCTTCTGCCCCAGAGAATGCTCCTGCAGAAGTTGTAGCATATCGGTATTGG : AATTACAATGCTCTAAGCTATGATGACAAGATCCTGGATGGATTTTATGATTTGTATGGTGTCCTCATGGAGTCCAATTCCTCGAAAATGCCCTCCCTCATTGATCTGCAAAGAACAGAAGTATCAGATCATATTAGTTGGGAAGCCATCCTTATCAGTAAAGCTGCGGACTCCAAGTTGTTGAAACTTGAACAGAGAGCTCTAGAGATTGCTGTTGAGGAGAGGTCAAAACTCATGGATTTTTCAGCCAGCAGTTTGGTACATGAGCTTGCTGTGCTAGTTTCTGACCACATGGGGGGCCCAGTTGTGGATCCAGAGAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAG : GTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGATGTTGCAATGAACTATGTAAAGATCGATGGAAG : GGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGTACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTTCATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAATCCAGAACTGCAG : GAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAAAATGAAAGTAAAGGATGCTTCACAATACATGATCGATGCTGCCAAAGAAAATCCACAGCTAGCTCAAAAACTGCACACTGTTTTACTTGAGAGTGGAGTTATTGCACCACCAAACTTGTTCGCTGAGATCTATCCAGAACAACTAGACGTATCTCATATAGAGGGAAAATCCAGGCTAGAGGAAAGAGACGAGTTCCAGAAAGTCAGGGGTCAATCTGATAAGAATCGAGCCCGCTTCTTACCCCCTCTGCCTTATCACAGTCCATACTCAAAGGGCAATGCACGTGGATCATTGGAACCTCAGCCAAATGTGAGAGAAGTTGATGAACAGCAAGTCTCTAGACAGTCTGAAGTAGCTCCACCAAAACATATGAAAAAAGTTCCTGTTGCTGCTGCTGCTGCCGCTGCCGCAGCTGCTGTTGCCTCTTCGATGGTAGTTGTTGCAGCCAAGACTAACCCTCACGGGGACCTTCCCGTAGCAGCTGCTGCCACAGCCACAGCTGCAGCAGTAGTAGCAACAACTGCAGCAGTCAGTAAGCAATATGAGGCACAAGGAG : ACTGTGAAAGAGCTGATGGAGATGCAGATACTGCTGTTTATGAGCAACAGGGATGTGGTCATCAAGAGCATGAGGCAGCAGGAGCAAATTCAGAGGGCGAAAGGATGTCAGATAAGTCAACTAGTAATGATAGTACTAAATCGGATGTGACACTTGATGATGT</gDNA_template>
            <first_frame> Q  I  S  L  G  S  S  A  P  E  N  A  P  A  E  V  V  A  Y  R  Y  W  :  N  Y  N  A  L  S  Y  D  D  K  I  L  D  G  F  Y  D  L  Y  G  V  L  M  E  S  N  S  S  K  M  P  S  L  I  D  L  Q  R  T  E  V  S  D  H  I  S  W  E  A  I  L  I  S  K  A  A  D  S  K  L  L  K  L  E  Q  R  A  L  E  I  A  V  E  E  R  S  K  L  M  D  F  S  A  S  S  L  V  H  E  L  A  V  L  V  S  D  H  M  G  G  P  V  V  D  P  E  S  M  L  L  A  W  R  S  I  S  Y  N  L  K  A  T  L  G  S  M  V  L  P  L  G  S  L  T  I  G  L  A  R  H  R  A  L  L  F  K  :  V  L  A  D  S  V  G  I  P  C  R  L  V  K  G  K  Q  Y  T  G  S  D  D  V  A  M  N  Y  V  K  I  D  G  R :   E  Y  I  V  D  L  M  A  A  P  G  T  L  I  P  S  D  T  S  G  V  H  G  D  Y  E  E  S  I  L  S  I  S  P  S  S  K  D  V  D  S  H  P  G  S  N  S  S  G  I  A  S  S  L  G  D  H  S  D  Y  G  T  A  D  K  R  S  R  F  A  E  S  T  S  A  G  N  E  S  P  S  S  G  N  P  E  L  Q  :  E  T  S  S  R  A  G  H  A  R  S  A  F  T  H  A  R  S  P  S  W  T  E  G  V  S  S  P  A  A  H  K  M  K  V  K  D  A  S  Q  Y  M  I  D  A  A  K  E  N  P  Q  L  A  Q  K  L  H  T  V  L  L  E  S  G  V  I  A  P  P  N  L  F  A  E  I  Y  P  E  Q  L  D  V  S  H  I  E  G  K  S  R  L  E  E  R  D  E  F  Q  K  V  R  G  Q  S  D  K  N  R  A  R  F  L  P  P  L  P  Y  H  S  P  Y  S  K  G  N  A  R  G  S  L  E  P  Q  P  N  V  R  E  V  D  E  Q  Q  V  S  R  Q  S  E  V  A  P  P  K  H  M  K  K  V  P  V  A  A  A  A  A  A  A  A  A  A  V  A  S  S  M  V  V  V  A  A  K  T  N  P  H  G  D  L  P  V  A  A  A  A  T  A  T  A  A  A  V  V  A  T  T  A  A  V  S  K  Q  Y  E  A  Q  G   : D  C  E  R  A  D  G  D  A  D  T  A  V  Y  E  Q  Q  G  C  G  H  Q  E  H  E  A  A  G  A  N  S  E  G  E  R  M  S  D  K  S  T  S  N  D  S  T  K  S  D  V  T  L  D  D   </first_frame>
            <second_frame>  K  S  V  *  A  L  L  P  Q  R  M  L  L  Q  K  L  *  H  I  G  I  G :   I  T  M  L  *  A  M  M  T  R  S  W  M  D  F  M  I  C  M  V  S  S  W  S  P  I  P  R  K  C  P  P  S  L  I  C  K  E  Q  K  Y  Q  I  I  L  V  G  K  P  S  L  S  V  K  L  R  T  P  S  C  *  N  L  N  R  E  L  *  R  L  L  L  R  R  G  Q  N  S  W  I  F  Q  P  A  V  W  Y  M  S  L  L  C  *  F  L  T  T  W  G  A  Q  L  W  I  Q  R  A  C  C  L  H  G  E  V  L  V  I  I  L  R  Q  L  *  G  V  W  F  C  L  L  V  L  *  P  L  D  W  L  V  I  V  H  C  Y  S  R :   F  *  L  I  V  W  G  F  L  A  D  *  *  K  E  S  S  I  Q  V  Q  M  M  L  Q  *  T  M  *  R  S  M  E   : G  S  I  L  S  I  *  W  Q  P  P  E  H  L  F  H  L  T  H  L  E  Y  M  E  T  M  K  S  L  F  S  P  S  V  H  P  P  K  M  L  I  L  I  Q  V  P  I  V  V  G  L  L  L  H  W  E  I  I  Q  T  M  E  R  Q  T  R  D  P  G  L  R  K  A  L  V  Q  E  M  N  L  P  L  L  V  I  Q  N  C  R :   K  L  L  L  E  L  G  M  Q  D  L  L  L  H  M  Q  D  L  L  R  G  Q  K  V  L  A  P  Q  L  H  T  K  *  K  *  R  M  L  H  N  T  *  S  M  L  P  K  K  I  H  S  *  L  K  N  C  T  L  F  Y  L  R  V  E  L  L  H  H  Q  T  C  S  L  R  S  I  Q  N  N  *  T  Y  L  I  *  R  E  N  P  G  *  R  K  E  T  S  S  R  K  S  G  V  N  L  I  R  I  E  P  A  S  Y  P  L  C  L  I  T  V  H  T  Q  R  A  M  H  V  D  H  W  N  L  S  Q  M  *  E  K  L  M  N  S  K  S  L  D  S  L  K  *  L  H  Q  N  I  *  K  K  F  L  L  L  L  L  L  P  L  P  Q  L  L  L  P  L  R  W  *  L  L  Q  P  R  L  T  L  T  G  T  F  P  *  Q  L  L  P  Q  P  Q  L  Q  Q  *  *  Q  Q  L  Q  Q  S  V  S  N  M  R  H  K  E  :  T  V  K  E  L  M  E  M  Q  I  L  L  F  M  S  N  R  D  V  V  I  K  S  M  R  Q  Q  E  Q  I  Q  R  A  K  G  C  Q  I  S  Q  L  V  M  I  V  L  N  R  M  *  H  L  M  M  </second_frame>
            <third_frame>   N  Q  F  R  L  F  C  P  R  E  C  S  C  R  S  C  S  I  S  V  L   : E  L  Q  C  S  K  L  *  *  Q  D  P  G  W  I  L  *  F  V  W  C  P  H  G  V  Q  F  L  E  N  A  L  P  H  *  S  A  K  N  R  S  I  R  S  Y  *  L  G  S  H  P  Y  Q  *  S  C  G  L  Q  V  V  E  T  *  T  E  S  S  R  D  C  C  *  G  E  V  K  T  H  G  F  F  S  Q  Q  F  G  T  *  A  C  C  A  S  F  *  P  H  G  G  P  S  C  G  S  R  E  H  V  A  C  M  E  K  Y  *  L  *  S  *  G  N  S  R  E  Y  G  F  A  S  W  F  F  D  H  W  I  G  S  S  S  C  I  V  I  Q   : G  S  S  *  *  C  G  D  S  L  P  I  S  K  R  K  A  V  Y  R  F  R  *  C  C  N  E  L  C  K  D  R  W  K  :  G  V  Y  C  R  F  D  G  S  P  R  N  T  Y  S  I  *  H  I  W  S  T  W  R  L  *  R  V  Y  S  L  H  Q  S  I  L  Q  R  C  *  F  S  S  R  F  Q  *  *  W  D  C  F  F  I  G  R  S  F  R  L  W  N  G  R  Q  E  I  Q  V  C  G  K  H  *  C  R  K  *  I  S  L  F  W  *  S  R  T  A   : G  N  F  F  *  S  W  A  C  K  I  C  F  Y  T  C  K  I  S  F  V  D  R  R  C  *  L  P  S  C  T  Q  N  E  S  K  G  C  F  T  I  H  D  R  C  C  Q  R  K  S  T  A  S  S  K  T  A  H  C  F  T  *  E  W  S  Y  C  T  T  K  L  V  R  *  D  L  S  R  T  T  R  R  I  S  Y  R  G  K  I  Q  A  R  G  K  R  R  V  P  E  S  Q  G  S  I  *  *  E  S  S  P  L  L  T  P  S  A  L  S  Q  S  I  L  K  G  Q  C  T  W  I  I  G  T  S  A  K  C  E  R  S  *  *  T  A  S  L  *  T  V  *  S  S  S  T  K  T  Y  E  K  S  S  C  C  C  C  C  C  R  C  R  S  C  C  C  L  F  D  G  S  C  C  S  Q  D  *  P  S  R  G  P  S  R  S  S  C  C  H  S  H  S  C  S  S  S  S  N  N  C  S  S  Q  *  A  I  *  G  T  R  R :   L  *  K  S  *  W  R  C  R  Y  C  C  L  *  A  T  G  M  W  S  S  R  A  *  G  S  R  S  K  F  R  G  R  K  D  V  R  *  V  N  *  *  *  *  Y  *  I  G  C  D  T  *  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58304" stop="58239"/>
                    <exon start="56890" stop="56453"/>
                    <exon start="55799" stop="55699"/>
                    <exon start="54820" stop="54556"/>
                    <exon start="54480" stop="53829"/>
                    <exon start="53720" stop="53560"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1683</number_coding_nucleotides>
                  <number_encoded_amino_acids>561</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISLGSSAPENAPAEVVAYRYWNYNALSYDDKILDGFYDLYGVLMESNSSKMPSLIDLQRTEVSDHISWEAILISKAADSKLLKLEQRALEIAVEERSKLMDFSASSLVHELAVLVSDHMGGPVVDPESMLLAWRSISYNLKATLGSMVLPLGSLTIGLARHRALLFKVLADSVGIPCRLVKGKQYTGSDDVAMNYVKIDGREYIVDLMAAPGTLIPSDTSGVHGDYEESILSISPSSKDVDSHPGSNSSGIASSLGDHSDYGTADKRSRFAESTSAGNESPSSGNPELQETSSRAGHARSAFTHARSPSWTEGVSSPAAHKMKVKDASQYMIDAAKENPQLAQKLHTVLLESGVIAPPNLFAEIYPEQLDVSHIEGKSRLEERDEFQKVRGQSDKNRARFLPPLPYHSPYSKGNARGSLEPQPNVREVDEQQVSRQSEVAPPKHMKKVPVAAAAAAAAAAVASSMVVVAAKTNPHGDLPVAAAATATAAAVVATTAAVSKQYEAQGDCERADGDADTAVYEQQGCGHQEHEAAGANSEGERMSDKSTSNDSTKSDVTLDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="59217" PGL_stop="58444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59217" e_stop="58444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="59217" e_stop="58444" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59217" stop="58444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTCATTTGCATTTTCATACCCTTTTCTTGGTTTGCTCTAGCTGTTTAAGGGATAAAGGAACAATCTTTTTTGGTTTAGGCTGAGTTCTTGAATTTGTGTTCAAGATTGAGTCTTTTTGCTGCTCAGTAGGGAAGTGGTAACTGGAGTTTCTTCACAAACGAAGTAAAGTTTGGTTCTTGGATTTGATTTGGTTAAAAACAAGCTTAAACTATGCAGTTCTTGTTATTACAGGTTTTAAGGTAAGAGATTTGTAACTGTGATTCATGATTGTAGTGGGACAATGGAGAGTGTTGAGGAATGAGAAAGTCCTATACGTTGGTGGTTAAGGAGATAGGTGGTCTCCGTCTTGGATAGTTCATCACCAGTGAGCTAGCTTCCGGAGTTGAGTTAGACTCGGGATCCATTTATTTACTGAGAGGTTTATGGCCAGCTTTTTTGTTTCTTTAGTACAACTACTAAGCATTGTGGTTTAGTGAATACAACAATGAAAAATTTTCTCAAGAAACTTCATATTGGGTCCAACCAATCAGAAGATTCAGAAGGATCAACATCTTCCTCAAGGAGCAAGAAATTAACTGATGTTTCATCACCTGAAAAGCATTCAAGCTCTAGAAGCTATCATGGGTCTGATAATAAACCTTTTTCAGCAATTTCAGGATGGTTAAATTCAGTTACAAATAGGCATAGTCCCAGTCCTCCGTCTTCCTCAAATGTGAATAGAGGGAATAGAATGGAACATTCTGACTCTGTCAGTATTGGTGGCACTGATGC</gDNA_template>
            <first_frame> I  F  I  C  I  F  I  P  F  S  W  F  A  L  A  V  *  G  I  K  E  Q  S  F  L  V  *  A  E  F  L  N  L  C  S  R  L  S  L  F  A  A  Q  *  G  S  G  N  W  S  F  F  T  N  E  V  K  F  G  S  W  I  *  F  G  *  K  Q  A  *  T  M  Q  F  L  L  L  Q  V  L  R  *  E  I  C  N  C  D  S  *  L  *  W  D  N  G  E  C  *  G  M  R  K  S  Y  T  L  V  V  K  E  I  G  G  L  R  L  G  *  F  I  T  S  E  L  A  S  G  V  E  L  D  S  G  S  I  Y  L  L  R  G  L  W  P  A  F  L  F  L  *  Y  N  Y  *  A  L  W  F  S  E  Y  N  N  E  K  F  S  Q  E  T  S  Y  W  V  Q  P  I  R  R  F  R  R  I  N  I  F  L  K  E  Q  E  I  N  *  C  F  I  T  *  K  A  F  K  L  *  K  L  S  W  V  *  *  *  T  F  F  S  N  F  R  M  V  K  F  S  Y  K  *  A  *  S  Q  S  S  V  F  L  K  C  E  *  R  E  *  N  G  T  F  *  L  C  Q  Y  W  W  H  *  C </first_frame>
            <second_frame>  S  S  F  A  F  S  Y  P  F  L  G  L  L  *  L  F  K  G  *  R  N  N  L  F  W  F  R  L  S  S  *  I  C  V  Q  D  *  V  F  L  L  L  S  R  E  V  V  T  G  V  S  S  Q  T  K  *  S  L  V  L  G  F  D  L  V  K  N  K  L  K  L  C  S  S  C  Y  Y  R  F  *  G  K  R  F  V  T  V  I  H  D  C  S  G  T  M  E  S  V  E  E  *  E  S  P  I  R  W  W  L  R  R  *  V  V  S  V  L  D  S  S  S  P  V  S  *  L  P  E  L  S  *  T  R  D  P  F  I  Y  *  E  V  Y  G  Q  L  F  C  F  F  S  T  T  T  K  H  C  G  L  V  N  T  T  M  K  N  F  L  K  K  L  H  I  G  S  N  Q  S  E  D  S  E  G  S  T  S  S  S  R  S  K  K  L  T  D  V  S  S  P  E  K  H  S  S  S  R  S  Y  H  G  S  D  N  K  P  F  S  A  I  S  G  W  L  N  S  V  T  N  R  H  S  P  S  P  P  S  S  S  N  V  N  R  G  N  R  M  E  H  S  D  S  V  S  I  G  G  T  D   </second_frame>
            <third_frame>   L  H  L  H  F  H  T  L  F  L  V  C  S  S  C  L  R  D  K  G  T  I  F  F  G  L  G  *  V  L  E  F  V  F  K  I  E  S  F  C  C  S  V  G  K  W  *  L  E  F  L  H  K  R  S  K  V  W  F  L  D  L  I  W  L  K  T  S  L  N  Y  A  V  L  V  I  T  G  F  K  V  R  D  L  *  L  *  F  M  I  V  V  G  Q  W  R  V  L  R  N  E  K  V  L  Y  V  G  G  *  G  D  R  W  S  P  S  W  I  V  H  H  Q  *  A  S  F  R  S  *  V  R  L  G  I  H  L  F  T  E  R  F  M  A  S  F  F  V  S  L  V  Q  L  L  S  I  V  V  *  *  I  Q  Q  *  K  I  F  S  R  N  F  I  L  G  P  T  N  Q  K  I  Q  K  D  Q  H  L  P  Q  G  A  R  N  *  L  M  F  H  H  L  K  S  I  Q  A  L  E  A  I  M  G  L  I  I  N  L  F  Q  Q  F  Q  D  G  *  I  Q  L  Q  I  G  I  V  P  V  L  R  L  P  Q  M  *  I  E  G  I  E  W  N  I  L  T  L  S  V  L  V  A  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58799" stop="58446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVYGQLFCFFSTTTKHCGLVNTTMKNFLKKLHIGSNQSEDSEGSTSSSRSKKLTDVSSPEKHSSSRSYHGSDNKPFSAISGWLNSVTNRHSPSPPSSSNVNRGNRMEHSDSVSIGGTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66602" PGL_stop="68063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66602" e_stop="67061"/>
            <exon e_start="67339" e_stop="67348"/>
            <exon e_start="67946" e_stop="67986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.978" e_score="0.935"/>
          <exon-intron don_prob="0.878" acc_prob="0.996" e_score="0.300"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="66602" e_stop="67061" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.978">
            <gDNA_intron_boundary i_start="67062" i_stop="67338" i_length="277"/>
          </intron>
          <exon e_serial="2" e_score="0.300">
            <gDNA_exon_boundary e_start="67339" e_stop="67348" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67349" i_stop="67945" i_length="597"/>
          </intron>
          <exon e_serial="3" e_score="0.927">
            <gDNA_exon_boundary e_start="67946" e_stop="67986" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66602" stop="67061"/>
              <exon start="67339" stop="67348"/>
              <exon start="67946" stop="67986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAACACCAAGAAACTCGGAAGAAACCGCTGTATTTTGTGGTGGCAACTGTCAAGAAAGAGAGAGAAAAACATATTGGCGTGGAAAGCTGAGATCTTGTGGTCGCAAATCAAGAATCAACACGACAGACTAGGGGAATTCAAAAAAAAAAAGACAAGGGGGGTGTTAGTAGTAGTATATGGGGGGTGGTAGTACATTTGTGGACGGAGTTCGTCGTTTGTTTCATCGTCGTTCAAGTACTACTACTATTACTACTATTGTTCATACCAATGCAGAACCGATCTTGAACAATCTTGAAAAACCCATTAAGATTTCAGACTCAAAATACCAAGAAGAAGAAGGAGGAGAGCTTACCATTATTGAAGACTTTGACATTTCGGGTCTTAAGTTTATAAGAGTTCCTAAAAGGGTTGATTTCCCTTTTTCATCTGCTTCTTATCAAATGGATCATCACAGAAAG : ATATTTATTG : GAGGCAGAGTTCTTCACAGAATATGGAGAGGCAAGCAGATA</gDNA_template>
            <first_frame> H  N  T  K  K  L  G  R  N  R  C  I  L  W  W  Q  L  S  R  K  R  E  K  N  I  L  A  W  K  A  E  I  L  W  S  Q  I  K  N  Q  H  D  R  L  G  E  F  K  K  K  K  T  R  G  V  L  V  V  V  Y  G  G  W  *  Y  I  C  G  R  S  S  S  F  V  S  S  S  F  K  Y  Y  Y  Y  Y  Y  Y  C  S  Y  Q  C  R  T  D  L  E  Q  S  *  K  T  H  *  D  F  R  L  K  I  P  R  R  R  R  R  R  A  Y  H  Y  *  R  L  *  H  F  G  S  *  V  Y  K  S  S  *  K  G  *  F  P  F  F  I  C  F  L  S  N  G  S  S  Q  K   : D  I  Y  W :   R  Q  S  S  S  Q  N  M  E  R  Q  A  D  </first_frame>
            <second_frame>  T  T  P  R  N  S  E  E  T  A  V  F  C  G  G  N  C  Q  E  R  E  R  K  T  Y  W  R  G  K  L  R  S  C  G  R  K  S  R  I  N  T  T  D  *  G  N  S  K  K  K  R  Q  G  G  C  *  *  *  Y  M  G  G  G  S  T  F  V  D  G  V  R  R  L  F  H  R  R  S  S  T  T  T  I  T  T  I  V  H  T  N  A  E  P  I  L  N  N  L  E  K  P  I  K  I  S  D  S  K  Y  Q  E  E  E  G  G  E  L  T  I  I  E  D  F  D  I  S  G  L  K  F  I  R  V  P  K  R  V  D  F  P  F  S  S  A  S  Y  Q  M  D  H  H  R  K  :  I  F  I   : G  G  R  V  L  H  R  I  W  R  G  K  Q  I </second_frame>
            <third_frame>   Q  H  Q  E  T  R  K  K  P  L  Y  F  V  V  A  T  V  K  K  E  R  E  K  H  I  G  V  E  S  *  D  L  V  V  A  N  Q  E  S  T  R  Q  T  R  G  I  Q  K  K  K  D  K  G  G  V  S  S  S  I  W  G  V  V  V  H  L  W  T  E  F  V  V  C  F  I  V  V  Q  V  L  L  L  L  L  L  L  F  I  P  M  Q  N  R  S  *  T  I  L  K  N  P  L  R  F  Q  T  Q  N  T  K  K  K  K  E  E  S  L  P  L  L  K  T  L  T  F  R  V  L  S  L  *  E  F  L  K  G  L  I  S  L  F  H  L  L  L  I  K  W  I  I  T  E  R :   Y  L  L  :  E  A  E  F  F  T  E  Y  G  E  A  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66777" stop="67061"/>
                    <exon start="67339" stop="67348"/>
                    <exon start="67946" stop="67986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMGGGSTFVDGVRRLFHRRSSTTTITTIVHTNAEPILNNLEKPIKISDSKYQEEEGGELTIIEDFDISGLKFIRVPKRVDFPFSSASYQMDHHRKIFIGGRVLHRIWRGKQI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66631" e_stop="67061"/>
            <exon e_start="67937" e_stop="68063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="66631" e_stop="67061" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67062" i_stop="67936" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="67937" e_stop="68063" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66631" stop="67061"/>
              <exon start="67937" stop="68063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTATTTTGTGGTGGCAACTGTCAAGAAAGAGAGAGAAAAACATATTGGCGTGGAAAGCTGAGATCTTGTGGTCGCAAATCAAGAATCAACACGACAGACTAGGGGAATTCAAAAAAAAAAAGACAAGGGGGGTGTTAGTAGTAGTATATGGGGGGTGGTAGTACATTTGTGGACGGAGTTCGTCGTTTGTTTCATCGTCGTTCAAGTACTACTACTATTACTACTATTGTTCATACCAATGCAGAACCGATCTTGAACAATCTTGAAAAACCCATTAAGATTTCAGACTCAAAATACCAAGAAGAAGAAGGAGGAGAGCTTACCATTATTGAAGACTTTGACATTTCGGGTCTTAAGTTTATAAGAGTTCCTAAAAGGGTTGATTTCCCTTTTTCATCTGCTTCTTATCAAATGGATCATCACAGAAAG : AACTCACAGGAGGCAGAGTTCTTCACAGAATATGGAGAGGCAAGCAGATACCAAATTCAGGAAGTTATCGGCAAGGGTAGCTATGGAGTTGTGGCCTCGGCTGTTGATACCAAAACTGGAGAAAGAG</gDNA_template>
            <first_frame> L  Y  F  V  V  A  T  V  K  K  E  R  E  K  H  I  G  V  E  S  *  D  L  V  V  A  N  Q  E  S  T  R  Q  T  R  G  I  Q  K  K  K  D  K  G  G  V  S  S  S  I  W  G  V  V  V  H  L  W  T  E  F  V  V  C  F  I  V  V  Q  V  L  L  L  L  L  L  L  F  I  P  M  Q  N  R  S  *  T  I  L  K  N  P  L  R  F  Q  T  Q  N  T  K  K  K  K  E  E  S  L  P  L  L  K  T  L  T  F  R  V  L  S  L  *  E  F  L  K  G  L  I  S  L  F  H  L  L  L  I  K  W  I  I  T  E  R :   T  H  R  R  Q  S  S  S  Q  N  M  E  R  Q  A  D  T  K  F  R  K  L  S  A  R  V  A  M  E  L  W  P  R  L  L  I  P  K  L  E  K  E </first_frame>
            <second_frame>  C  I  L  W  W  Q  L  S  R  K  R  E  K  N  I  L  A  W  K  A  E  I  L  W  S  Q  I  K  N  Q  H  D  R  L  G  E  F  K  K  K  K  T  R  G  V  L  V  V  V  Y  G  G  W  *  Y  I  C  G  R  S  S  S  F  V  S  S  S  F  K  Y  Y  Y  Y  Y  Y  Y  C  S  Y  Q  C  R  T  D  L  E  Q  S  *  K  T  H  *  D  F  R  L  K  I  P  R  R  R  R  R  R  A  Y  H  Y  *  R  L  *  H  F  G  S  *  V  Y  K  S  S  *  K  G  *  F  P  F  F  I  C  F  L  S  N  G  S  S  Q  K   : E  L  T  G  G  R  V  L  H  R  I  W  R  G  K  Q  I  P  N  S  G  S  Y  R  Q  G  *  L  W  S  C  G  L  G  C  *  Y  Q  N  W  R  K   </second_frame>
            <third_frame>   V  F  C  G  G  N  C  Q  E  R  E  R  K  T  Y  W  R  G  K  L  R  S  C  G  R  K  S  R  I  N  T  T  D  *  G  N  S  K  K  K  R  Q  G  G  C  *  *  *  Y  M  G  G  G  S  T  F  V  D  G  V  R  R  L  F  H  R  R  S  S  T  T  T  I  T  T  I  V  H  T  N  A  E  P  I  L  N  N  L  E  K  P  I  K  I  S  D  S  K  Y  Q  E  E  E  G  G  E  L  T  I  I  E  D  F  D  I  S  G  L  K  F  I  R  V  P  K  R  V  D  F  P  F  S  S  A  S  Y  Q  M  D  H  H  R  K  :  N  S  Q  E  A  E  F  F  T  E  Y  G  E  A  S  R  Y  Q  I  Q  E  V  I  G  K  G  S  Y  G  V  V  A  S  A  V  D  T  K  T  G  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66777" stop="67061"/>
                    <exon start="67937" stop="68062"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMGGGSTFVDGVRRLFHRRSSTTTITTIVHTNAEPILNNLEKPIKISDSKYQEEEGGELTIIEDFDISGLKFIRVPKRVDFPFSSASYQMDHHRKNSQEAEFFTEYGEASRYQIQEVIGKGSYGVVASAVDTKTGER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="68101" PGL_stop="68672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68101" e_stop="68558"/>
            <exon e_start="68655" e_stop="68672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.957" e_score="0.980"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="68101" e_stop="68558" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.957">
            <gDNA_intron_boundary i_start="68559" i_stop="68654" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="68655" e_stop="68672" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68101" stop="68558"/>
              <exon start="68655" stop="68672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGATGCCACTAGAATTTTAAGAGAAATTAAGCTTCTTCGGCTTCTACGGCATCCTGATATCGTAGAAATAAAGCACATCATGTTGCCCCCTTCTCGGCGAGAGTTTAAAGATATATATGTCGTCTTTGAATTGATGGAGTCTGATCTCCACCAGGTTATTAAGGCCAATGATGATCTTACACCTGAGCATTATCAGTTTTTCCTATATCAGCTTATGCGAGGATTAAAATATACTCATACTGGTTTGTTTTTTATACAAGTTGAAACCTTCTCTTTGACATCTCTATGTAATGGAGAAGCTAACTTTTCCTCGGGACCTCTTAACAGCAAACGTTTTCCATCGAGATTTAAAGCCGAAGAATATTCTTGCTAATGCTGACTGTAAATTGAAGATTTGTGACTTCGGGCTTGCTCGTGTATCATTTAATGACACACCCTCAGCTATTTTCTGGACT : GATTATGTTGCTACTCGA</gDNA_template>
            <first_frame> L  *  C  H  *  N  F  K  R  N  *  A  S  S  A  S  T  A  S  *  Y  R  R  N  K  A  H  H  V  A  P  F  S  A  R  V  *  R  Y  I  C  R  L  *  I  D  G  V  *  S  P  P  G  Y  *  G  Q  *  *  S  Y  T  *  A  L  S  V  F  P  I  S  A  Y  A  R  I  K  I  Y  S  Y  W  F  V  F  Y  T  S  *  N  L  L  F  D  I  S  M  *  W  R  S  *  L  F  L  G  T  S  *  Q  Q  T  F  S  I  E  I  *  S  R  R  I  F  L  L  M  L  T  V  N  *  R  F  V  T  S  G  L  L  V  Y  H  L  M  T  H  P  Q  L  F  S  G  L :   I  M  L  L  L   </first_frame>
            <second_frame>  S  D  A  T  R  I  L  R  E  I  K  L  L  R  L  L  R  H  P  D  I  V  E  I  K  H  I  M  L  P  P  S  R  R  E  F  K  D  I  Y  V  V  F  E  L  M  E  S  D  L  H  Q  V  I  K  A  N  D  D  L  T  P  E  H  Y  Q  F  F  L  Y  Q  L  M  R  G  L  K  Y  T  H  T  G  L  F  F  I  Q  V  E  T  F  S  L  T  S  L  C  N  G  E  A  N  F  S  S  G  P  L  N  S  K  R  F  P  S  R  F  K  A  E  E  Y  S  C  *  C  *  L  *  I  E  D  L  *  L  R  A  C  S  C  I  I  *  *  H  T  L  S  Y  F  L  D   : *  L  C  C  Y  S  </second_frame>
            <third_frame>   L  M  P  L  E  F  *  E  K  L  S  F  F  G  F  Y  G  I  L  I  S  *  K  *  S  T  S  C  C  P  L  L  G  E  S  L  K  I  Y  M  S  S  L  N  *  W  S  L  I  S  T  R  L  L  R  P  M  M  I  L  H  L  S  I  I  S  F  S  Y  I  S  L  C  E  D  *  N  I  L  I  L  V  C  F  L  Y  K  L  K  P  S  L  *  H  L  Y  V  M  E  K  L  T  F  P  R  D  L  L  T  A  N  V  F  H  R  D  L  K  P  K  N  I  L  A  N  A  D  C  K  L  K  I  C  D  F  G  L  A  R  V  S  F  N  D  T  P  S  A  I  F  W  T  :  D  Y  V  A  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68102" stop="68476"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLMRGLKYTHTGLFFIQVETFSLTSLCNGEANFSSGPLNSKRFPSRFKAEEYSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77808" PGL_stop="80598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77808" e_stop="78779"/>
            <exon e_start="80259" e_stop="80598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77808" e_stop="78779" e_length="972"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80259" e_stop="80598" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77808" stop="78674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77817" stop="78254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77819" stop="78626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78779"/>
              <exon start="80259" stop="80532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77822" stop="78688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77830" stop="78578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77835" stop="78497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77837" stop="78351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77838" stop="78627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77838" stop="78498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77839" stop="78684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726787" strand="+"/>
          </PGS_line>
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            <referenceDNA id="SGN-E437726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78060" stop="78495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78062" stop="78670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78080" stop="78704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78158" stop="78779"/>
              <exon start="80259" stop="80356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78158" stop="78759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78236" stop="78779"/>
              <exon start="80259" stop="80320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78244" stop="78779"/>
              <exon start="80259" stop="80527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78273" stop="78779"/>
              <exon start="80259" stop="80527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78275" stop="78779"/>
              <exon start="80259" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78287" stop="78779"/>
              <exon start="80259" stop="80333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78303" stop="78779"/>
              <exon start="80259" stop="80413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78317" stop="78779"/>
              <exon start="80259" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78317" stop="78779"/>
              <exon start="80259" stop="80358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78331" stop="78779"/>
              <exon start="80259" stop="80532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78388" stop="78779"/>
              <exon start="80259" stop="80344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78401" stop="78779"/>
              <exon start="80259" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78410" stop="78779"/>
              <exon start="80259" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78410" stop="78779"/>
              <exon start="80259" stop="80506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78437" stop="78779"/>
              <exon start="80259" stop="80527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78446" stop="78779"/>
              <exon start="80259" stop="80540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78446" stop="78779"/>
              <exon start="80259" stop="80536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78450" stop="78779"/>
              <exon start="80259" stop="80292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78497" stop="78779"/>
              <exon start="80259" stop="80529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78499" stop="78779"/>
              <exon start="80259" stop="80598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78539" stop="78779"/>
              <exon start="80259" stop="80532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78541" stop="78779"/>
              <exon start="80259" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78573" stop="78779"/>
              <exon start="80259" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78600" stop="78779"/>
              <exon start="80259" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78606" stop="78779"/>
              <exon start="80259" stop="80572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78607" stop="78779"/>
              <exon start="80259" stop="80521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78608" stop="78779"/>
              <exon start="80259" stop="80527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78637" stop="78779"/>
              <exon start="80259" stop="80515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78743" stop="78779"/>
              <exon start="80259" stop="80572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="78779"/>
              <exon start="80259" stop="80531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCTAGAGTTTTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG : GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTCATGTATTGGAGTTTCTTGCTTGTTGTTTACCTCCATCTTCATTAAATCATCACTTCATAT</gDNA_template>
            <first_frame> K  P  *  S  F  L  S  I  F  I  S  A  S  P  F  S  A  T  K  G  D  F  T  D  G  R  H  Q  S  E  K  M  S  Q  E  S  L  V  L  R  G  T  M  K  A  H  T  D  W  V  T  A  I  A  T  P  I  D  N  S  D  M  I  V  T  S  S  R  D  K  S  I  I  V  W  S  L  T  K  D  G  S  Q  Y  G  V  P  R  R  R  L  T  G  H  G  H  F  V  E  D  V  V  L  S  S  D  G  M  F  A  L  S  G  S  W  D  G  E  L  R  L  W  D  L  Q  A  G  T  T  A  R  R  F  V  G  H  T  K  D  V  L  S  V  A  F  S  V  D  N  R  Q  I  V  S  A  S  R  D  K  T  I  K  L  W  N  T  L  G  E  C  K  Y  T  I  Q  E  Q  D  S  H  S  D  W  V  S  C  V  R  F  S  P  N  N  L  Q  P  T  I  V  S  G  S  W  D  R  T  V  K  I  W  N  L  T  N  C  K  L  R  S  T  L  A  G  H  S  G  Y  V  N  T  V  A  V  S  P  D  G  S  L  C  A  S  G  G  K  D  G  V  I  L  L  W  D  L  A  E  G  K  K  L  Y  S  L  D  A  G  S  I  I  H  T  L  C  F  S  P  N  R  Y  W  L  C  A  A  T  E  S  S  I  K  I  W  D  L  E  S  K  S  I  V  V  D  L  K  V  D  L  K  Q  E  S  E  M  F  G  T  A  A  T  D  S  K  T  K  :  V  I  Y  C  T  S  L  S  W  S  A  D  G  S  T  L  F  S  G  Y  T  D  G  L  I  R  V  W  G  I  G  R  Y  *  G  R  R  G  S  T  R  A  I  W  P  I  L  N  *  K  S  F  R  F  *  R  F  S  V  F  F  I  I  M  R  P  Q  L  F  Q  F  W  I  F  I  L  L  H  W  I  S  V  L  L  *  I  *  V  V  L  L  N  L  H  V  L  E  F  L  A  C  C  L  P  P  S  S  L  N  H  H  F  I  </first_frame>
            <second_frame>  N  P  R  V  F  S  P  F  S  S  P  P  L  L  S  L  P  P  K  V  I  S  L  T  A  A  T  N  L  R  K  C  R  K  N  H  *  S  S  A  V  P  *  K  P  T  L  T  G  S  L  L  L  Q  P  Q  L  T  T  P  T  *  L  S  P  P  P  G  I  S  P  S  S  S  G  L  *  L  K  T  A  H  N  T  V  S  L  V  A  V  L  P  D  M  A  I  S  L  K  M  S  C  C  R  L  T  A  C  L  H  S  P  V  H  G  T  V  S  S  V  Y  G  I  F  K  L  E  Q  L  L  V  V  S  L  D  T  L  K  M  F  S  L  L  H  S  L  L  T  T  V  R  L  S  L  L  P  V  T  R  P  S  S  Y  G  T  H  S  V  S  A  S  T  Q  F  R  N  R  I  H  T  L  I  G  F  L  V  S  V  L  A  Q  I  I  F  S  P  L  L  C  L  V  H  G  I  A  L  S  K  S  G  I  S  P  T  V  S  S  G  L  L  L  R  V  T  A  G  M  *  I  L  W  P  C  P  Q  M  V  R  C  V  L  A  E  G  K  M  V  S  Y  C  Y  G  I  W  L  K  G  R  N  C  T  L  L  M  L  A  P  L  S  T  P  S  V  L  A  R  I  G  I  G  S  V  L  L  L  N  L  V  S  R  F  G  I  W  R  A  K  A  S  W  L  I  L  K  L  I  *  N  K  R  V  K  C  S  E  L  L  L  P  I  P  K  P  R :   S  Y  T  A  P  V  *  A  G  V  L  M  E  A  H  F  S  V  A  I  Q  M  V  *  L  E  F  G  E  L  D  V  I  R  E  E  E  D  R  R  E  P  F  G  Q  Y  *  I  K  S  L  L  D  F  E  D  S  P  C  F  S  L  L  *  G  L  N  C  F  N  F  G  F  L  F  C  Y  I  G  Y  L  S  C  Y  K  S  K  L  F  C  L  I  F  M  Y  W  S  F  L  L  V  V  Y  L  H  L  H  *  I  I  T  S  Y </second_frame>
            <third_frame>   T  L  E  F  S  L  H  F  H  L  R  L  S  F  L  C  H  Q  R  *  F  H  *  R  P  P  P  I  *  E  N  V  A  R  I  T  S  P  P  R  Y  H  E  S  P  H  *  L  G  H  C  Y  C  N  P  N  *  Q  L  R  H  D  C  H  L  L  Q  G  *  V  H  H  R  L  V  F  D  *  R  R  L  T  I  R  C  P  S  S  P  S  Y  R  T  W  P  F  R  *  R  C  R  V  V  V  *  R  H  V  C  T  L  R  F  M  G  R  *  A  P  F  M  G  S  S  S  W  N  N  C  S  S  F  R  W  T  H  *  R  C  S  L  C  C  I  L  C  *  Q  P  S  D  C  L  C  F  P  *  Q  D  H  Q  A  M  E  H  T  R  *  V  Q  V  H  N  S  G  T  G  F  T  L  *  L  G  F  L  C  P  F  *  P  K  *  S  S  A  H  Y  C  V  W  F  M  G  S  H  C  Q  N  L  E  S  H  Q  L  *  A  Q  V  Y  S  C  G  S  Q  R  V  C  E  Y  C  G  R  V  P  R  W  F  V  V  C  *  R  R  E  R  W  C  H  I  A  M  G  F  G  *  R  E  E  T  V  L  S  *  C  W  L  H  Y  P  H  P  L  F  *  P  E  *  V  L  A  L  C  C  Y  *  I  *  Y  Q  D  L  G  F  G  E  Q  K  H  R  G  *  S  *  S  *  S  E  T  R  E  *  N  V  R  N  C  C  Y  R  F  Q  N  Q   : G  H  I  L  H  Q  F  E  L  E  C  *  W  K  H  T  F  Q  W  L  Y  R  W  S  D  *  S  L  G  N  W  T  L  L  G  K  K  R  I  D  A  S  H  L  A  N  T  E  L  K  V  F  *  I  L  K  I  L  R  V  F  H  Y  Y  E  A  S  T  V  S  I  L  D  F  Y  F  V  T  L  D  I  C  L  A  I  N  L  S  C  F  A  *  S  S  C  I  G  V  S  C  L  L  F  T  S  I  F  I  K  S  S  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77817" stop="78779"/>
                    <exon start="80259" stop="80360"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLSIFISASPFSATKGDFTDGRHQSEKMSQESLVLRGTMKAHTDWVTAIATPIDNSDMIVTSSRDKSIIVWSLTKDGSQYGVPRRRLTGHGHFVEDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKTIKLWNTLGECKYTIQEQDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRSTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHTLCFSPNRYWLCAATESSIKIWDLESKSIVVDLKVDLKQESEMFGTAATDSKTKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIGRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77817" e_stop="78433"/>
            <exon e_start="80282" e_stop="80538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77817" e_stop="78433" e_length="617"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78434" i_stop="80281" i_length="1848"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="80282" e_stop="80538" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77817" stop="78254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77837" stop="78351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77839" stop="78245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77841" stop="78308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77841" stop="78211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77841" stop="78109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77845" stop="78357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77845" stop="78350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77845" stop="78201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77846" stop="78433"/>
              <exon start="80282" stop="80401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77846" stop="78245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77847" stop="78388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77847" stop="78356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77847" stop="78354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77848" stop="78362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77848" stop="78354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77848" stop="78217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77849" stop="78388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77849" stop="78357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77849" stop="78177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77850" stop="78384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77850" stop="78368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77850" stop="78354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77850" stop="78353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77852" stop="78363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77853" stop="78166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77855" stop="78376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77858" stop="78363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77860" stop="78361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77860" stop="78356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77860" stop="78307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77862" stop="78422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77862" stop="78363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77862" stop="78245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77862" stop="78220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77865" stop="78307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77865" stop="78262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77866" stop="78361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77875" stop="78426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77886" stop="78239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77894" stop="78132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77899" stop="78307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77934" stop="78088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77982" stop="78419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAAT : CTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</gDNA_template>
            <first_frame> S  F  L  S  I  F  I  S  A  S  P  F  S  A  T  K  G  D  F  T  D  G  R  H  Q  S  E  K  M  S  Q  E  S  L  V  L  R  G  T  M  K  A  H  T  D  W  V  T  A  I  A  T  P  I  D  N  S  D  M  I  V  T  S  S  R  D  K  S  I  I  V  W  S  L  T  K  D  G  S  Q  Y  G  V  P  R  R  R  L  T  G  H  G  H  F  V  E  D  V  V  L  S  S  D  G  M  F  A  L  S  G  S  W  D  G  E  L  R  L  W  D  L  Q  A  G  T  T  A  R  R  F  V  G  H  T  K  D  V  L  S  V  A  F  S  V  D  N  R  Q  I  V  S  A  S  R  D  K  T  I  K  L  W  N  T  L  G  E  C  K  Y  T  I  Q  E  Q  D  S  H  S  D  W  V  S  C  V  R  F  S  P  N  N  L  Q  P  T  I  V  S  G  S  W  D  R  T  V  K  I :   W  S  A  D  G  S  T  L  F  S  G  Y  T  D  G  L  I  R  V  W  G  I  G  R  Y  *  G  R  R  G  S  T  R  A  I  W  P  I  L  N  *  K  S  F  R  F  *  R  F  S  V  F  F  I  I  M  R  P  Q  L  F  Q  F  W  I  F  I  L  L  H  W  I  S  V  L  L  *  I  *  V  V  L  L  N  L  </first_frame>
            <second_frame>  V  F  S  P  F  S  S  P  P  L  L  S  L  P  P  K  V  I  S  L  T  A  A  T  N  L  R  K  C  R  K  N  H  *  S  S  A  V  P  *  K  P  T  L  T  G  S  L  L  L  Q  P  Q  L  T  T  P  T  *  L  S  P  P  P  G  I  S  P  S  S  S  G  L  *  L  K  T  A  H  N  T  V  S  L  V  A  V  L  P  D  M  A  I  S  L  K  M  S  C  C  R  L  T  A  C  L  H  S  P  V  H  G  T  V  S  S  V  Y  G  I  F  K  L  E  Q  L  L  V  V  S  L  D  T  L  K  M  F  S  L  L  H  S  L  L  T  T  V  R  L  S  L  L  P  V  T  R  P  S  S  Y  G  T  H  S  V  S  A  S  T  Q  F  R  N  R  I  H  T  L  I  G  F  L  V  S  V  L  A  Q  I  I  F  S  P  L  L  C  L  V  H  G  I  A  L  S  K   : S  G  V  L  M  E  A  H  F  S  V  A  I  Q  M  V  *  L  E  F  G  E  L  D  V  I  R  E  E  E  D  R  R  E  P  F  G  Q  Y  *  I  K  S  L  L  D  F  E  D  S  P  C  F  S  L  L  *  G  L  N  C  F  N  F  G  F  L  F  C  Y  I  G  Y  L  S  C  Y  K  S  K  L  F  C  L  I  F </second_frame>
            <third_frame>   F  S  L  H  F  H  L  R  L  S  F  L  C  H  Q  R  *  F  H  *  R  P  P  P  I  *  E  N  V  A  R  I  T  S  P  P  R  Y  H  E  S  P  H  *  L  G  H  C  Y  C  N  P  N  *  Q  L  R  H  D  C  H  L  L  Q  G  *  V  H  H  R  L  V  F  D  *  R  R  L  T  I  R  C  P  S  S  P  S  Y  R  T  W  P  F  R  *  R  C  R  V  V  V  *  R  H  V  C  T  L  R  F  M  G  R  *  A  P  F  M  G  S  S  S  W  N  N  C  S  S  F  R  W  T  H  *  R  C  S  L  C  C  I  L  C  *  Q  P  S  D  C  L  C  F  P  *  Q  D  H  Q  A  M  E  H  T  R  *  V  Q  V  H  N  S  G  T  G  F  T  L  *  L  G  F  L  C  P  F  *  P  K  *  S  S  A  H  Y  C  V  W  F  M  G  S  H  C  Q  N  :  L  E  C  *  W  K  H  T  F  Q  W  L  Y  R  W  S  D  *  S  L  G  N  W  T  L  L  G  K  K  R  I  D  A  S  H  L  A  N  T  E  L  K  V  F  *  I  L  K  I  L  R  V  F  H  Y  Y  E  A  S  T  V  S  I  L  D  F  Y  F  V  T  L  D  I  C  L  A  I  N  L  S  C  F  A  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77817" stop="78433"/>
                    <exon start="80282" stop="80360"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLSIFISASPFSATKGDFTDGRHQSEKMSQESLVLRGTMKAHTDWVTAIATPIDNSDMIVTSSRDKSIIVWSLTKDGSQYGVPRRRLTGHGHFVEDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKTIKLWNTLGECKYTIQEQDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWSADGSTLFSGYTDGLIRVWGIGRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="78058" PGL_stop="77859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78058" e_stop="77859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="78058" e_stop="77859" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78058" stop="77859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTGAGCCGTCTTTAGTCAAAGACCAGACGATGATGGACTTATCCCTGGAGGAGGTGACAATCATGTCGGAGTTGTCAATTGGGGTTGCAATAGCAGTGACCCAGTCAGTGTGGGCTTTCATGGTACCGCGGAGGACTAGTGATTCTTGCGACATTTTCTCAGATTGGTGGCGGCCGTCAGTGAAATCACCTTTGGT</gDNA_template>
            <first_frame> Y  C  E  P  S  L  V  K  D  Q  T  M  M  D  L  S  L  E  E  V  T  I  M  S  E  L  S  I  G  V  A  I  A  V  T  Q  S  V  W  A  F  M  V  P  R  R  T  S  D  S  C  D  I  F  S  D  W  W  R  P  S  V  K  S  P  L   </first_frame>
            <second_frame>  I  V  S  R  L  *  S  K  T  R  R  *  W  T  Y  P  W  R  R  *  Q  S  C  R  S  C  Q  L  G  L  Q  *  Q  *  P  S  Q  C  G  L  S  W  Y  R  G  G  L  V  I  L  A  T  F  S  Q  I  G  G  G  R  Q  *  N  H  L  W  </second_frame>
            <third_frame>   L  *  A  V  F  S  Q  R  P  D  D  D  G  L  I  P  G  G  G  D  N  H  V  G  V  V  N  W  G  C  N  S  S  D  P  V  S  V  G  F  H  G  T  A  E  D  *  *  F  L  R  H  F  L  R  L  V  A  A  V  S  E  I  T  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78058" stop="77861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCEPSLVKDQTMMDLSLEEVTIMSELSIGVAIAVTQSVWAFMVPRRTSDSCDIFSDWWRPSVKSPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="78703" PGL_stop="78339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78703" e_stop="78339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="78703" e_stop="78339" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78703" stop="78339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTTTTGCTCTCCAAATCCCAAATCTTGATACTAGATTCAGTAGCAGCACAGAGCCAATACCTATTCGGGCTAAAACAGAGGGTGTGGATAATGGAGCCAGCATCAAGAGAGTACAGTTTCTTCCCTTCAGCCAAATCCCATAGCAATATGACACCATCTTTCCCTCCGCTAGCACACAACGAACCATCTGGGGACACGGCCACAGTATTCACATACCCGCTGTGACCCGCAAGAGTAGACCTGAGCTTACAGTTGGTGAGATTCCAGATTTTGACAGTGCGATCCCATGAACCAGACACAATAGTGGGCTGAAGATTATTTGGGCTAAAACGGACACAAGAAACCCAATCAGAGTGTGAATC</gDNA_template>
            <first_frame> M  L  L  L  S  K  S  Q  I  L  I  L  D  S  V  A  A  Q  S  Q  Y  L  F  G  L  K  Q  R  V  W  I  M  E  P  A  S  R  E  Y  S  F  F  P  S  A  K  S  H  S  N  M  T  P  S  F  P  P  L  A  H  N  E  P  S  G  D  T  A  T  V  F  T  Y  P  L  *  P  A  R  V  D  L  S  L  Q  L  V  R  F  Q  I  L  T  V  R  S  H  E  P  D  T  I  V  G  *  R  L  F  G  L  K  R  T  Q  E  T  Q  S  E  C  E   </first_frame>
            <second_frame>  C  F  C  S  P  N  P  K  S  *  Y  *  I  Q  *  Q  H  R  A  N  T  Y  S  G  *  N  R  G  C  G  *  W  S  Q  H  Q  E  S  T  V  S  S  L  Q  P  N  P  I  A  I  *  H  H  L  S  L  R  *  H  T  T  N  H  L  G  T  R  P  Q  Y  S  H  T  R  C  D  P  Q  E  *  T  *  A  Y  S  W  *  D  S  R  F  *  Q  C  D  P  M  N  Q  T  Q  *  W  A  E  D  Y  L  G  *  N  G  H  K  K  P  N  Q  S  V  N  </second_frame>
            <third_frame>   A  F  A  L  Q  I  P  N  L  D  T  R  F  S  S  S  T  E  P  I  P  I  R  A  K  T  E  G  V  D  N  G  A  S  I  K  R  V  Q  F  L  P  F  S  Q  I  P  *  Q  Y  D  T  I  F  P  S  A  S  T  Q  R  T  I  W  G  H  G  H  S  I  H  I  P  A  V  T  R  K  S  R  P  E  L  T  V  G  E  I  P  D  F  D  S  A  I  P  *  T  R  H  N  S  G  L  K  I  I  W  A  K  T  D  T  R  N  P  I  R  V  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78703" stop="78476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLLSKSQILILDSVAAQSQYLFGLKQRVWIMEPASREYSFFPSAKSHSNMTPSFPPLAHNEPSGDTATVFTYPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="81299" PGL_stop="87741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81307" e_stop="81369"/>
            <exon e_start="82638" e_stop="82679"/>
            <exon e_start="82859" e_stop="82930"/>
            <exon e_start="83918" e_stop="83983"/>
            <exon e_start="84889" e_stop="85041"/>
            <exon e_start="86009" e_stop="86120"/>
            <exon e_start="87517" e_stop="87562"/>
            <exon e_start="87670" e_stop="87741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.952"/>
          <exon-intron don_prob="0.977" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="0.958"/>
          <exon-intron don_prob="0.142" acc_prob="0.980" e_score="0.939"/>
          <exon-intron don_prob="0.996" acc_prob="0.703" e_score="0.961"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.937" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="81307" e_stop="81369" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82638" e_stop="82679" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="82859" e_stop="82930" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="83918" e_stop="83983" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.142" acc_prob="0.980">
            <gDNA_intron_boundary i_start="83984" i_stop="84888" i_length="905"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="84889" e_stop="85041" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.703">
            <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="86009" e_stop="86120" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87517" e_stop="87562" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.937" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="0.958">
            <gDNA_exon_boundary e_start="87670" e_stop="87741" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81307" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83983"/>
              <exon start="84889" stop="85041"/>
              <exon start="86009" stop="86120"/>
              <exon start="87517" stop="87562"/>
              <exon start="87670" stop="87741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81307" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83983"/>
              <exon start="84889" stop="85041"/>
              <exon start="86009" stop="86120"/>
              <exon start="87517" stop="87562"/>
              <exon start="87670" stop="87741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81309" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83983"/>
              <exon start="84889" stop="85041"/>
              <exon start="86009" stop="86120"/>
              <exon start="87517" stop="87537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81322" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83983"/>
              <exon start="84889" stop="84999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587192" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG : ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG : AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG : AGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATG : AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG : ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG : GTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAG : GGAATAACAGTTGAAGTAGGAAGAGCACATTTTGAAACAGAGACGACAAGATTTACAATTCTTGATGCCCCG</gDNA_template>
            <first_frame> I  Y  C  H  R  K  H  K  P  Y  A  S  S  H  S  I  N  R  A  P  W  :  I  L  K  R  T  S  R  R  C  S  L  I  H  L  :  K  I  L  C  W  S  T  W  K  M  L  D  L  V  K  L  *  N  M  I  K  L  M  E  :  R  I  V  L  W  K  K  R  G  R  L  M  M  L  G  N  L  I  C  R  K  M  :  S  *  E  M  K  H  I  Q  T  *  S  Q  S  M  S  I  Q  R  V  S  L  E  K  K  V  L  P  Q  K  I  C  R  W  R  L  K  S  I  K  R  G  I  *  M  W  Y  L  L  V  T  W  :  M  L  E  S  L  L  L  E  D  K  Y  Y  Y  L  V  V  K  L  M  T  V  R  Y  K  S  M  R  K  K  R  R  I  K  T  E  R  A   : G  I  W  P  I  L  W  I  Q  M  K  K  R  G  *  R :   E  *  Q  L  K  *  E  E  H  I  L  K  Q  R  R  Q  D  L  Q  F  L  M  P   </first_frame>
            <second_frame>  F  I  V  T  A  S  T  N  P  T  R  P  L  T  Q  L  T  E  P  H  G :   Y  *  R  G  H  Q  G  A  A  A  *  F  I  * :   R  Y  C  V  G  Q  R  G  R  C  *  T  W  *  S  Y  K  T  *  *  S  *  W  R :   G  *  F  Y  G  R  R  E  E  D  *  *  C  W  E  T  *  Y  A  G  R  * :   V  K  R  *  S  T  S  R  L  K  A  R  A  C  R  S  K  G  C  L  W  K  R  K  F  S  P  R  R  Y  A  G  G  G  *  S  Q  *  K  E  A  S  E  C  G  I  Y  W  S  R  G :   C  W  K  V  Y  Y  W  R  T  N  T  I  T  *  W  S  S  *  *  P  Y  D  T  K  V  *  E  R  S  E  G  *  K  Q  R  E  L  :  V  Y  G  L  Y  Y  G  Y  K  *  R  R  E  G  E   : G  N  N  S  *  S  R  K  S  T  F  *  N  R  D  D  K  I  Y  N  S  *  C  P  </second_frame>
            <third_frame>   L  L  S  P  Q  A  Q  T  L  R  V  L  S  L  N  *  P  S  P  M   : D  I  E  E  D  I  K  A  L  Q  L  D  S  S   : E  D  T  V  L  V  N  V  E  D  A  R  P  G  E  A  I  K  H  D  K  V  D  G   : E  D  S  F  M  E  E  E  R  K  T  D  D  V  G  K  P  D  M  P  E  D   : E  L  R  D  E  A  H  P  D  L  K  P  E  H  V  D  P  K  G  V  S  G  K  E  S  S  P  P  E  D  M  Q  V  E  V  E  V  N  K  K  R  H  L  N  V  V  F  I  G  H  V   : D  A  G  K  S  T  I  G  G  Q  I  L  L  L  S  G  Q  V  D  D  R  T  I  Q  K  Y  E  K  E  A  K  D  K  N  R  E  S  W :   Y  M  A  Y  I  M  D  T  N  E  E  E  R  V  K  :  G  I  T  V  E  V  G  R  A  H  F  E  T  E  T  T  R  F  T  I  L  D  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81357" stop="81369"/>
                    <exon start="82638" stop="82679"/>
                    <exon start="82859" stop="82930"/>
                    <exon start="83918" stop="83983"/>
                    <exon start="84889" stop="85041"/>
                    <exon start="86009" stop="86120"/>
                    <exon start="87517" stop="87562"/>
                    <exon start="87670" stop="87741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPMDIEEDIKALQLDSSEDTVLVNVEDARPGEAIKHDKVDGEDSFMEEERKTDDVGKPDMPEDELRDEAHPDLKPEHVDPKGVSGKESSPPEDMQVEVEVNKKRHLNVVFIGHVDAGKSTIGGQILLLSGQVDDRTIQKYEKEAKDKNRESWYMAYIMDTNEEERVKGITVEVGRAHFETETTRFTILDAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81304" e_stop="81369"/>
            <exon e_start="82638" e_stop="82679"/>
            <exon e_start="82859" e_stop="82930"/>
            <exon e_start="83918" e_stop="83987"/>
            <exon e_start="84889" e_stop="85041"/>
            <exon e_start="86009" e_stop="86120"/>
            <exon e_start="87517" e_stop="87562"/>
            <exon e_start="87670" e_stop="87701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.889"/>
          <exon-intron don_prob="0.977" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.937" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="81304" e_stop="81369" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82638" e_stop="82679" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82859" e_stop="82930" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83918" e_stop="83987" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.812" acc_prob="0.980">
            <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84889" e_stop="85041" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.703">
            <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="86009" e_stop="86120" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87517" e_stop="87562" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.937" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="0.969">
            <gDNA_exon_boundary e_start="87670" e_stop="87701" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81304" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83987"/>
              <exon start="84889" stop="84942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277310" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81307" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83987"/>
              <exon start="84889" stop="85041"/>
              <exon start="86009" stop="86120"/>
              <exon start="87517" stop="87562"/>
              <exon start="87670" stop="87701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG : ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG : AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG : AGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAG : AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG : ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG : GTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAG : GGAATAACAGTTGAAGTAGGAAGAGCACATTT</gDNA_template>
            <first_frame> S  I  Y  C  H  R  K  H  K  P  Y  A  S  S  H  S  I  N  R  A  P  W  :  I  L  K  R  T  S  R  R  C  S  L  I  H  L  :  K  I  L  C  W  S  T  W  K  M  L  D  L  V  K  L  *  N  M  I  K  L  M  E  :  R  I  V  L  W  K  K  R  G  R  L  M  M  L  G  N  L  I  C  R  K  M  V   : E  L  R  D  E  A  H  P  D  L  K  P  E  H  V  D  P  K  G  V  S  G  K  E  S  S  P  P  E  D  M  Q  V  E  V  E  V  N  K  K  R  H  L  N  V  V  F  I  G  H  V   : D  A  G  K  S  T  I  G  G  Q  I  L  L  L  S  G  Q  V  D  D  R  T  I  Q  K  Y  E  K  E  A  K  D  K  N  R  E  S  W :   Y  M  A  Y  I  M  D  T  N  E  E  E  R  V  K  :  G  I  T  V  E  V  G  R  A  H   </first_frame>
            <second_frame>  Q  F  I  V  T  A  S  T  N  P  T  R  P  L  T  Q  L  T  E  P  H  G :   Y  *  R  G  H  Q  G  A  A  A  *  F  I  * :   R  Y  C  V  G  Q  R  G  R  C  *  T  W  *  S  Y  K  T  *  *  S  *  W  R :   G  *  F  Y  G  R  R  E  E  D  *  *  C  W  E  T  *  Y  A  G  R  W  *  :  S  *  E  M  K  H  I  Q  T  *  S  Q  S  M  S  I  Q  R  V  S  L  E  K  K  V  L  P  Q  K  I  C  R  W  R  L  K  S  I  K  R  G  I  *  M  W  Y  L  L  V  T  W  :  M  L  E  S  L  L  L  E  D  K  Y  Y  Y  L  V  V  K  L  M  T  V  R  Y  K  S  M  R  K  K  R  R  I  K  T  E  R  A   : G  I  W  P  I  L  W  I  Q  M  K  K  R  G  *  R :   E  *  Q  L  K  *  E  E  H  I  </second_frame>
            <third_frame>   N  L  L  S  P  Q  A  Q  T  L  R  V  L  S  L  N  *  P  S  P  M   : D  I  E  E  D  I  K  A  L  Q  L  D  S  S   : E  D  T  V  L  V  N  V  E  D  A  R  P  G  E  A  I  K  H  D  K  V  D  G   : E  D  S  F  M  E  E  E  R  K  T  D  D  V  G  K  P  D  M  P  E  D  G  R :   V  K  R  *  S  T  S  R  L  K  A  R  A  C  R  S  K  G  C  L  W  K  R  K  F  S  P  R  R  Y  A  G  G  G  *  S  Q  *  K  E  A  S  E  C  G  I  Y  W  S  R  G :   C  W  K  V  Y  Y  W  R  T  N  T  I  T  *  W  S  S  *  *  P  Y  D  T  K  V  *  E  R  S  E  G  *  K  Q  R  E  L  :  V  Y  G  L  Y  Y  G  Y  K  *  R  R  E  G  E   : G  N  N  S  *  S  R  K  S  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82910" stop="82930"/>
                    <exon start="83918" stop="83987"/>
                    <exon start="84889" stop="85041"/>
                    <exon start="86009" stop="86120"/>
                    <exon start="87517" stop="87562"/>
                    <exon start="87670" stop="87699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMIKLMERIVLWKKRGRLMMLGNLICRKMVELRDEAHPDLKPEHVDPKGVSGKESSPPEDMQVEVEVNKKRHLNVVFIGHVDAGKSTIGGQILLLSGQVDDRTIQKYEKEAKDKNRESWYMAYIMDTNEEERVKGITVEVGRAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81306" e_stop="81369"/>
            <exon e_start="82638" e_stop="82679"/>
            <exon e_start="82859" e_stop="82930"/>
            <exon e_start="83925" e_stop="83987"/>
            <exon e_start="84889" e_stop="85041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.922"/>
          <exon-intron don_prob="0.977" acc_prob="0.974" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="81306" e_stop="81369" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="82638" e_stop="82679" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82859" e_stop="82930" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82931" i_stop="83924" i_length="994"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83925" e_stop="83987" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.812" acc_prob="0.980">
            <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="84889" e_stop="85041" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81306" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83925" stop="83987"/>
              <exon start="84889" stop="85041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG : ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG : AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG : TTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAG : AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG</gDNA_template>
            <first_frame> N  L  L  S  P  Q  A  Q  T  L  R  V  L  S  L  N  *  P  S  P  M   : D  I  E  E  D  I  K  A  L  Q  L  D  S  S   : E  D  T  V  L  V  N  V  E  D  A  R  P  G  E  A  I  K  H  D  K  V  D  G   : V  L  W  K  K  R  G  R  L  M  M  L  G  N  L  I  C  R  K  M  V   : E  L  R  D  E  A  H  P  D  L  K  P  E  H  V  D  P  K  G  V  S  G  K  E  S  S  P  P  E  D  M  Q  V  E  V  E  V  N  K  K  R  H  L  N  V  V  F  I  G  H  V  </first_frame>
            <second_frame>  I  Y  C  H  R  K  H  K  P  Y  A  S  S  H  S  I  N  R  A  P  W  :  I  L  K  R  T  S  R  R  C  S  L  I  H  L  :  K  I  L  C  W  S  T  W  K  M  L  D  L  V  K  L  *  N  M  I  K  L  M  E  :  F  Y  G  R  R  E  E  D  *  *  C  W  E  T  *  Y  A  G  R  W  *  :  S  *  E  M  K  H  I  Q  T  *  S  Q  S  M  S  I  Q  R  V  S  L  E  K  K  V  L  P  Q  K  I  C  R  W  R  L  K  S  I  K  R  G  I  *  M  W  Y  L  L  V  T  W </second_frame>
            <third_frame>   F  I  V  T  A  S  T  N  P  T  R  P  L  T  Q  L  T  E  P  H  G :   Y  *  R  G  H  Q  G  A  A  A  *  F  I  * :   R  Y  C  V  G  Q  R  G  R  C  *  T  W  *  S  Y  K  T  *  *  S  *  W  S :   F  M  E  E  E  R  K  T  D  D  V  G  K  P  D  M  P  E  D  G  R :   V  K  R  *  S  T  S  R  L  K  A  R  A  C  R  S  K  G  C  L  W  K  R  K  F  S  P  R  R  Y  A  G  G  G  *  S  Q  *  K  E  A  S  E  C  G  I  Y  W  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81357" stop="81369"/>
                    <exon start="82638" stop="82679"/>
                    <exon start="82859" stop="82930"/>
                    <exon start="83925" stop="83987"/>
                    <exon start="84889" stop="85040"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPMDIEEDIKALQLDSSEDTVLVNVEDARPGEAIKHDKVDGVLWKKRGRLMMLGNLICRKMVELRDEAHPDLKPEHVDPKGVSGKESSPPEDMQVEVEVNKKRHLNVVFIGHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="81299" e_stop="81369"/>
            <exon e_start="82638" e_stop="82679"/>
            <exon e_start="82859" e_stop="82930"/>
            <exon e_start="84889" e_stop="85041"/>
            <exon e_start="86009" e_stop="86120"/>
            <exon e_start="87517" e_stop="87551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.958"/>
          <exon-intron don_prob="0.977" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="81299" e_stop="81369" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82638" e_stop="82679" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82859" e_stop="82930" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="82931" i_stop="84888" i_length="1958"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84889" e_stop="85041" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.703">
            <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86009" e_stop="86120" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87517" e_stop="87551" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81299" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="84889" stop="85041"/>
              <exon start="86009" stop="86120"/>
              <exon start="87517" stop="87551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCTTCAATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG : ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG : AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG : AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG : ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG : GTATATGGCCTATATTATGGATACAAATGAAGAAG</gDNA_template>
            <first_frame> H  L  Q  F  I  V  T  A  S  T  N  P  T  R  P  L  T  Q  L  T  E  P  H  G :   Y  *  R  G  H  Q  G  A  A  A  *  F  I  * :   R  Y  C  V  G  Q  R  G  R  C  *  T  W  *  S  Y  K  T  *  *  S  *  W  R :   V  K  R  *  S  T  S  R  L  K  A  R  A  C  R  S  K  G  C  L  W  K  R  K  F  S  P  R  R  Y  A  G  G  G  *  S  Q  *  K  E  A  S  E  C  G  I  Y  W  S  R  G :   C  W  K  V  Y  Y  W  R  T  N  T  I  T  *  W  S  S  *  *  P  Y  D  T  K  V  *  E  R  S  E  G  *  K  Q  R  E  L  :  V  Y  G  L  Y  Y  G  Y  K  *  R   </first_frame>
            <second_frame>  T  F  N  L  L  S  P  Q  A  Q  T  L  R  V  L  S  L  N  *  P  S  P  M   : D  I  E  E  D  I  K  A  L  Q  L  D  S  S   : E  D  T  V  L  V  N  V  E  D  A  R  P  G  E  A  I  K  H  D  K  V  D  G   : E  L  R  D  E  A  H  P  D  L  K  P  E  H  V  D  P  K  G  V  S  G  K  E  S  S  P  P  E  D  M  Q  V  E  V  E  V  N  K  K  R  H  L  N  V  V  F  I  G  H  V   : D  A  G  K  S  T  I  G  G  Q  I  L  L  L  S  G  Q  V  D  D  R  T  I  Q  K  Y  E  K  E  A  K  D  K  N  R  E  S  W :   Y  M  A  Y  I  M  D  T  N  E  E  </second_frame>
            <third_frame>   P  S  I  Y  C  H  R  K  H  K  P  Y  A  S  S  H  S  I  N  R  A  P  W  :  I  L  K  R  T  S  R  R  C  S  L  I  H  L  :  K  I  L  C  W  S  T  W  K  M  L  D  L  V  K  L  *  N  M  I  K  L  M  E  :  S  *  E  M  K  H  I  Q  T  *  S  Q  S  M  S  I  Q  R  V  S  L  E  K  K  V  L  P  Q  K  I  C  R  W  R  L  K  S  I  K  R  G  I  *  M  W  Y  L  L  V  T  W  :  M  L  E  S  L  L  L  E  D  K  Y  Y  Y  L  V  V  K  L  M  T  V  R  Y  K  S  M  R  K  K  R  R  I  K  T  E  R  A   : G  I  W  P  I  L  W  I  Q  M  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81357" stop="81369"/>
                    <exon start="82638" stop="82679"/>
                    <exon start="82859" stop="82930"/>
                    <exon start="84889" stop="85041"/>
                    <exon start="86009" stop="86120"/>
                    <exon start="87517" stop="87550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPMDIEEDIKALQLDSSEDTVLVNVEDARPGEAIKHDKVDGELRDEAHPDLKPEHVDPKGVSGKESSPPEDMQVEVEVNKKRHLNVVFIGHVDAGKSTIGGQILLLSGQVDDRTIQKYEKEAKDKNRESWYMAYIMDTNEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 461 chains have been computed
$ 
$ memory statistics:
$ 419696 bytes spliced alignments in total
$ 204 spliced alignments have been stored
$ 2057 bytes was the average size of a spliced alignment
$ 28376 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1891 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 495 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:51:00
-->
