<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:51:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329208" ref_strand="+" ref_description="SGN-U329208        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | C2 domain-containing protein, similar to zinc finger and C2 domain protein GI:9957238 from (Arabidopsis thaliana) | chr3:6152386-6153440 FORWARD | Aliases: MEB5.20(evalue: 1e-54, score=210) genbank/nr: gi|30684739|ref|NP_188425.2| C2 domain-containing protein [Arabidopsis thaliana] gi|9294500|dbj|BAB02719.1| GTPase activating protein-like [Arabidopsis thaliana](evalue: 7e-53, score=210)">
      <seq>tcatcattttttccccctcatttgcatgtaaaactccatatcccccaagaaatacacaaaataggcattaccttaacaatatcctctcctaattaggcagggctaagctcctttattaagaagatcattcaaatattgactagaggaagactttcacttggtggggaaggtgttaaaggaaaaaaaaaacatcaaaaaaaagatttctttttcttattaattaagtaactgctatattactgtaatcaataagttttttttttttttgaaaaaaaaaatataaagaggggagtttatattttgtttaaagcagcagaggaaggaagaatataggaaaatccttaatggacaatctttttggtcttttaagaatcaaaattaagagaggtataaacctcgctgtacgtgatgtccgcagcagtgatccctatgttgttgtcaaaatgggtaatcagaaactgaagacgcgagttataaagaaggatgttaatcctgaatggaatgaatatcttaccctttctgtatcagatgcaaatcttcctgtgaagctgactgtatacgatcacgataggttcagcatggatgacaaaatgggagatgcagaatttgatatcaaaccatttttagatgctttgaaaatgaatttagattctctcccatgtggcacagtgatcacaagagaaacgccgtgcaggacaaactgtctgtctgaagagagcaaagtgacatggcaagacaaccaaagttgtgcaagatttgtgcctcagattgagaaatgtggagtgtggagaggtagaacttcaacttcagtggatcaatattcctggaagcaaacgtttatagagatttatctcttctgttgtttattctaacctgatttgcccctatatataggccagaattgataaatatgcctttgtcaacacaaggtctgcactctgcagcttagtaaaatctgatttcaaacattctatatatatatactctgtttgctgaatatggagctacagatgatatataccttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23186" stop="26087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23477" g_stop="23611" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23612" i_stop="24124" i_length="513">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24125" g_stop="24447" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="455" r_length="321" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24448" i_stop="25119" i_length="672">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25120" g_stop="25215" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="551" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25216" i_stop="25305" i_length="90">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25306" g_stop="25787" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="1034" r_length="483" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U329208" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1036</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23477" e_stop="23611"/>
          <exon e_start="24125" e_stop="24447"/>
          <exon e_start="25120" e_stop="25215"/>
          <exon e_start="25306" e_stop="25787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCATTTTCCCCCTCATTTGCATGTAAAACTCCATATCCCCCAAGAAATACACAAAATAGGCATTACCTTAACAATATCCTCTCCTAATTAGGCAGGGCTAAGCTCCTTTATTAAGAAGATCATTCAAATGTAAGTATCAATTATCAACTTTAATTTATAAATGAAAATATAATTTTTTTTTCTTCCATATTCTTCAAATGATTGAAATTAAATTTCTATTCTTTTTCTCTACATTTTGTCAAAACTTTTTCTTACGATTGGAATTAGATCTAAGTCAATTTCAATAACAAATTGGATTGGCTTCTTTCTTTTACGTGATTTGTCAATCCTGATAAACAGTGGCGAAATAAAAAAATTTAATGATCAAATTCAAAAGAGTTTTAAAATGTCACACATGGAATTCTTTTATAATTTTTTAAATTTATGCAATATATATTTTAAATCCCCCTTACTTTGTATTTGCGTGTTAAATTCAAAATCCAAAAATATAAAAGAATCTAAATTTCAAATCATAAATTTTAAATTCTAACGGAGACTCAACTGATATATCTATAAAATCCTTCAATTCATACTCCTAAAATACCTAAATTGTGACTATTTTTTTTCTTTCTAATATATATACTTGTTTTCCCATTTTTTCAGATTGACTAGAGGAAGACTTTCACTTGGCGGGGAAGGTGTT-AAGGAAAAAAAAAACATAAAAAAAAAATAAATTCTTTTTCTTATTAATTAAGTAACTGCTCTATTACTGTAATCAATAAGTTTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCCGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCTTATGTTGTTGTCAAAATGGGTAATCAGGTACGAAAAAATTATATTATTTATATATGATTAATTTTTTATTTATTTATTACTTTAAAATTTAAATCTCTTATTAAAATTTTGAGTCCGTTACTGGCTCATTCCCAATTAGTTTGGGATTGATTGTCTTAATGTTTGCTTGCATTTGGTTGTTTCCAAGATTGAATTTTGTTTCCCCTTTTGTCCTATTTTTTAAATCTCAATATGTGTATTTTTTGTATTTCTTGGGATGTTGGGTTGGCTTAGTTTCTTCTGGATATGATTGTTGAATTCTGTAGTGTTTACATATTTCTATCCACCAATAGGGTGTGTTAGGTATGAAAGGAAACTGTTTTCTTGAAAATCGTTATTCATAACACGTTCCTACTCATTTTCTTGCGTACCTAATGAGGTGTACTGTTGGAGGGTGGGGCGGACACAATCAATGTGGTTTATCATTTAAGTAGAGCTTGTTTTCCCTCATTTCTGAGGAACTTGTTTTCCTGGAGAACATATTTTTCTAGATATTTGACCCAATCGAACATGGAAAAATTGAAAAAATAGAACACGTCCTAATTAGTTTTTGAAATGCTAAGCTTTACTTTTTACTCTAGGCTCTTGATAATGTATCTTGAGATTAAATTGCAATTTTTTTCTCCTGTTCTGTATAGTCTTTATTGATCACTTGTGCAGAAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTGGTAAAGTTCATTAGTTGCTGATACAATCCTTTACCTACGCGCGTGCAAATGTATTGTCCTGATTATGCATTCATGTTTGTTTGCTTTTAGACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACC-AAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTCTGTTGTTTATTCTAACCTGATTTGCCCCTATATATAGGCCAGAATTGATAAATATGCCTTTGTACAACACAAGGTCTGCACTCTGCAGCTTAGTAAAATCTGATTTCAAACATTCTATATATATATACTCTGTTTGCTGAATATGGAGCTACAGATGATATATA-CTTCTTATACAAA</genome_strand>
        <mrna_strand>TCATCAT-TTTTTCCCCCTCATTTGCATGTAAAACTCCATATCCCCCAAGAAATACACAAAATAGGCATTACCTTAACAATATCCTCTCCTAATTAGGCAGGGCTAAGCTCCTTTATTAAGAAGATCATTCAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTAGAGGAAGACTTTCACTTGGTGGGGAAGGTGTTAAAGGAAAAAAAAAACAT-CAAAAAAAA-GATTTCTTTTTCTTATTAATTAAGTAACTGCTATATTACTGTAATCAATAAG-TTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCAGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCCTATGTTGTTGTCAAAATGGGTAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTG..........................................................................................ACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACCAAAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTCTGTTGTTTATTCTAACCTGATTTGCCCCTATATATAGGCCAGAATTGATAAATATGCCTTTGT-CAACACAAGGTCTGCACTCTGCAGCTTAGTAAAATCTGATTTCAAACATTCTATATATATATACTCTGTTTGCTGAATATGGAGCTACAGATGATATATACCTTCTTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31325" stop="32573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31625" g_stop="32273" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31625" e_stop="32273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGAAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCATCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTGAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31984" stop="33391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32284" g_stop="33091" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32284" e_stop="33091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCAAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCTAGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAAATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314974" ref_strand="+" ref_description="SGN-U314974        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT3G18000.1 | Symbol: None | phosphoethanolamine N-methyltransferase 1 / PEAMT 1 (NMT1), identical to Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) (SP:Q9FR44){Arabidopsis thaliana}; strong similarity to phosphoethanolamine N-methyltransferase from (Spinacia oleracea) GI:7407189, (Triticum aestivum) GI:17887465; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family | chr3:6154369-6157558 FORWARD | Aliases: MEB5.22, AT3G17990 (evalue: 0, score=790) genbank/nr: gi|12584943|gb|AAG59894.1| phosphoethanolamine N-methyltransferase [Lycopersicon esculentum](evalue: 0, score=821)">
      <seq>ttgatgcagcagagaggtagaattagtaattgtaaatcaaggtccttttctagatctcgtcttgctgttgaaggttcttaacctcttcagcttctatcatggctgccattgctccagaggtaggagaagagcgtgagattcaaaagagttattggatggagcaaactagtgaactcaatttggaggcaatgatgcgtgattctgcagcatctgatcttgacaaagaggataggcctgaggtgctttcactgctcccttcatatgaaggtaaatccgtgttggaattgggtgctggtattggccgtttcactggggacttagccgagaaggctggggagcttgtagcagtggactttattgaagaagtgactaagaagaatgaaagtatcaacgggcaccacaagaatgtcaagtttgtgtgtgctgatgtgacttcaccagatttgacggttttacctgaatcagtggacttgatattttctaactggctactgatgtatctttccaacgaagaggttcaggaccttgcggagagaatgatcaaatggttgaaagttggtggctatatattttttagagagacatgcttccatcaatcaggagaccacaagggaaagaacaacccaacccactatcgagagcctcgattttatacaaaggttttccaagaatgtactttaaaggatgatgctggaaaatcatatgaactttctcttattggttataagtgcattgaaacttatgtaaaaaacaaaaagaatcaaaatgagatttgctggatatggcagaaggttcattccgaggatgacaggggattccagcatttcttggacactgttcagtacaagtctaatggtatactgagatatgaacgtgtgttcggggcaggctttgtcagcacaggaggaattgacaccaccaaagaattcgttgccatgatggatcttcagcctggcgaaaaggtccttgacgttggctgtggcattggaggaggtgacttttacatggctgagaagtatgatgttcatgttgtaggcattgatctttcagttaacatgatcacattggcttttgaacgtgctattgggcgcaaatgcgcggttgaatttgaggttgctgattgcacggtgaaaacatatcctgaagaatcattcgatgtgatatacagccgggacactatcctgcacatccaggacaagcctgcattattcagatctttctataagtggctgaagcctggaggcagagtcctcataagcgattactgcaaaaaggcaggaccagcttccgaagactttgcagcgtatatcaaacaaagaggctacgatttacatgatgttgaagcatatggacagatgcttagagatgctggtttcaacgaagttattgctgatgatcgaactgagcagttcatgcaagttctccagaaagagttggatactgtggagaatgaaagagagttatttatccaagaattttctgaacaagactacaatgatatagttggaggttggaaggccaagctagttagaagttcatctggtgagcagagatggggtttgttctttgccaagaaaaattgatgtgtgttattgtgtactgttgtttcattgaagataataaaaatgatttaagtttgatgttgtaatgattcgaggctctaccctatgtagaccccatttataggattacactggctatgttgtttattttaatgattcctactctgtcggtttaatgtaatatgtgagttggttaagatcatgttattaataaaagtttgtcataaagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccggggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34150" stop="38764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34450" g_stop="34566" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34864" g_stop="34985" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="239" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="377" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35468" g_stop="35605" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="515" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36248" g_stop="36391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="659" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36559" g_stop="36669" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="770" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36759" g_stop="36900" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="912" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37101" g_stop="37381" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="913" r_stop="1193" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.045" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="37515" g_stop="37676" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1194" r_stop="1355" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="37677" i_stop="37759" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="37760" g_stop="37813" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1356" r_stop="1409" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="37814" i_stop="37991" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37992" g_stop="38066" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1484" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="38067" i_stop="38150" i_length="84">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="38151" g_stop="38463" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1485" r_stop="1797" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1798" polyA_stop="1830"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U314974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1797</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34450" e_stop="34566"/>
          <exon e_start="34864" e_stop="34985"/>
          <exon e_start="35164" e_stop="35301"/>
          <exon e_start="35468" e_stop="35605"/>
          <exon e_start="36248" e_stop="36391"/>
          <exon e_start="36559" e_stop="36669"/>
          <exon e_start="36759" e_stop="36900"/>
          <exon e_start="37101" e_stop="37381"/>
          <exon e_start="37515" e_stop="37676"/>
          <exon e_start="37760" e_stop="37813"/>
          <exon e_start="37992" e_stop="38066"/>
          <exon e_start="38151" e_stop="38463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAGGTAATCAATGTTCTCGCTCTTTTCAACGTGATATCAGAACAAGCAAATGTCTCTATCACCAGAGTATCCGTATCGGGTTCATCTGAACTAATACTTTTGACGTGGAACATAAACAAGTTCAATGCTGAGAAATTTTAAAATTGAATTCATAACACTTAACAAAAGATATATTTCTCTGTAATTGTAGCAAAGTTAATGTGTCATCTATTTAATTATTATGTTTTTTTAGATGAGAGGAGTGCACTAAACAGTTTTAACATTTTGTTTGAATTGGACATTTTAATGTGTTGTGTGTAGAGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAGGTATATATATTTATGTGCGCGCTTCTTTCTGTATAAATTGTTCCTTGTTGAAATTATAGTTTCAGACTTAATTGAGTGTGAAACCTTATTAATCTACACCGCTTTATTATGGTAAGATTTGTGGTAAGAAAATGTATTGGGTAATACACTCAACTATTGAGATTTGTCATGTACGTAGGTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAGGTTTTGTGGCTTTTTTTACTTTGGGGCCTTTGATTATAGGAACCGGTGAATGAGTTGGTTCTATCTATGATTCACTTGTTGTTGCTTTATTTTTAGATAATATGGTGACAAATCAAGTGAATAGGCTTTTATATACTTGCTTATCGATTTGTTTGCTTCGTTGCAGAATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAGGTAACATCTTCCTGCTTCCTACACGAAAATGTCAATAAGGTTGCACATAATACAAAAATTTTATAACCAGGAAGTTATTTCTATGCTCAAATCCAGGAGGCATGACACGATGCCTAGGCGGACTCCTGCTAATTAAATGCCTATTGTGTAAAAGAAGTATGGAAGACACACACTAAACTATGTCAATAACACAGGATATTTGAATTGACATGATTCATCAATATCTTTTTAATATAATGTCCGAGAACTTCAACGTAGTGTCTGCAGCATCTAACAGTGACATGCATATATGATCATCAAAATGCAGCCTCTTTGCCAGATCATGCTTGCGGTAGGAAGGCTTAAAACAAAATAGTGTTGTATAGGTTATACCGTTCAATAATCCACCACCATCCCATAGTTTTTGAGTTTCATCCCTTTAGAAAACTTGAGAATTTGAGTAAAATTTTTCAGAACAAGCCAACATTCTAGAGTCATTAGACTACTTTCCAAATGTGGATAAAGAACATCTATTATGGATGATGATTATGGAAAAATGAATGTCTTAGGATCTCCCTTGCTCTTCATACATATGTCTTCTATTTCTTATTTAACTGATTACTATTTAACATTTCAAACTACTTTTTTTTCCATTTTTTGCAGGTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAGGTCATTCTCAAAAGTGTTCTTTTCATTCACACTCAAAAATTAACGCATGAGTGACTAGAGCTTTACATTAATTCTATGTGTAGTGTGATCTTTTCTTTTTTGATCAGCTTAAACTACTTGATTCTGTTGTTTGATTATCTTCTTCTTCTGATCTTAACTTAATGCAGGTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAGGTAAGACTTTGCCATCATCATTACACTTCTATAAGTTACTATTCACATGACGATAAAATTAATGTGTTCTTGCTGCTTGCAACTTGCAGATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTGGTATGCCTCTTGGATTATCACTTTATGCAATAAACTATAGGATCTTTAGTTTGCTTCTTTGGATTATCACTGTGGTTAGGGCTTGTACACATGGTTCTTCAAACATTTCTGTTTACGAGTTCTGTTCCTTCTTTCCAAAAACAATAATTTAGTGCAGAAGTAAACTGATATTTGGTTTTTCTGTATTTGTTCTTGAACAGACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAGGTAATTAGCAGTCTCTCATTTCATTTTCTTGGTTGTGCTGCACCTGCTCTAAAGTCATATGTTTGACCTTCAACATTACATTGTCACAATTGTTCCTCGTCCTAACGGTTGAATAATTATCGAGTGTTTGCAGGACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAGGTAAACATTTACCCCATACAATGAATGTGTACCCAATCCTCTTTCTTTGCATGACAATGCTACTTTATAATTTCACATCATAGATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGATCGAACTGAGCAGGTATGTTTTTCTTTCTTTGTTTTGGATTTAAGTTATACACACTGACAGTATAAAACACTATCAGCATGTAGTCAGCTTAGTTATCTTTTTTACATCACATTTCAACTTAAAACTCGTATTCTTTCGCTTGGAAGAGAGTGATGATATGCACCTAAAATGTCTATTACTTTCCTTGCAGTTCATGCAAGTTCTCCAGAAAGAGTTGGATACTGTGGAGAATGAAAGAGAGTTATTTATCCAAGAATTTTCTGAAGTGAGTGCATTGTCATATAAGTATAATTGAAATGTCTAATGATTGATTTTATCTTATTTTGCTTCTATTTTTGTGTATACACAGCAAGACTACAATGATATAGTTGGAGGTTGGAAGGCCAAGCTAGTTAGAAGTTCATCTGGTGAGCAGAGATGGGGTTTGTTCTTTGCCAAGAAAAATTGATGTGTGTTATTGTGTACTGTTGTTTCATTGAAGATAATAAAAATGATTTAAGTTTGATGTTGTAATGATTCGAGGCTCTACCCTATGTAGACCCCATTTATAGGATTACACTGGCTATGTTGTTTATTTTAATGATTCCTACTCTGTCGGTTTAATGTAATATGTGAGTTGGTTAAGATCATGTTATTAATAAAAGTTTGTCATAAAGATTTAA</genome_strand>
        <mrna_strand>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG..................................................................................................................................................................................GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG......................................................................................................................................................................AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG.......................................................................................................................................................................GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG.........................................................................................ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG........................................................................................................................................................................................................ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG.....................................................................................................................................GACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAG...................................................................................ATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGATCGAACTGAGCAG..................................................................................................................................................................................TTCATGCAAGTTCTCCAGAAAGAGTTGGATACTGTGGAGAATGAAAGAGAGTTATTTATCCAAGAATTTTCTGAA....................................................................................CAAGACTACAATGATATAGTTGGAGGTTGGAAGGCCAAGCTAGTTAGAAGTTCATCTGGTGAGCAGAGATGGGGTTTGTTCTTTGCCAAGAAAAATTGATGTGTGTTATTGTGTACTGTTGTTTCATTGAAGATAATAAAAATGATTTAAGTTTGATGTTGTAATGATTCGAGGCTCTACCCTATGTAGACCCCATTTATAGGATTACACTGGCTATGTTGTTTATTTTAATGATTCCTACTCTGTCGGTTTAATGTAATATGTGAGTTGGTTAAGATCATGTTATTAATAAAAGTTTGTCATAAAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330446" ref_strand="+" ref_description="SGN-U330446        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G18210.2 | Symbol: None | calcium-binding protein, putative, similar to SP:Q9M7R0 Calcium-binding allergen Ole e 8 (PCA18/PCA23) {Olea europaea}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr1:6266602-6268821 REVERSE | Aliases: None (evalue: 8e-43, score=170) genbank/nr: gi|6901652|gb|AAF31151.1| calcium-binding protein [Olea europaea] >gi|14423648|sp|Q9M7R0|ALL8_OLEEU Calcium-binding allergen Ole e 8 (PCA18/PCA23) (evalue: 3e-49, score=197)">
      <seq>cacaatcggaaaaaatggctaccgaaggtcccaagccctgcgtttaccttcaagacatggaagaagtgaaaaaagtattcgcacgcttcgacgcgaatggcgacggcatgatctccggcgacgaactttccggcgtactgaaagccctaggatccgacacttcgccggaagaagttgcacgtatgatggccgaaattgataccgataaggacggttgcattaacctagatgaatttgcagatttttgcaaaaacgacgaatccgtcgacggcggcgctaaggaactgaaggaagcgtttgatctttacgatcaggatcataacggaaggatttctgctacggaacttcatcagatcctgaaccgcttgggccagaattgtacccttcaggattgtaccagaatgatcacgtccgttgatgcaaacggtgacggttacgtttgctttgaagagtttaagaagatgatgggtaataaataaatcattttatcgtaagttttacagttatttgagtggctgataacggtggggtacaccggatatttgtgcgtcctcctgtagtgtataactttgtggtctaataaatagcaagaccttagctttccatcgccttttattttgtacgtagatctcgttcattttaatttatgtgataatttttatttgtgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40909" stop="42180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41209" g_stop="41880" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U330446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41209" e_stop="41880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATCGTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTTGTACGTAGATCTCGTTCATTTTAATTTATGTGATAATTTTTATTTGTGTTAAT</genome_strand>
        <mrna_strand>CACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATCGTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTTGTACGTAGATCTCGTTCATTTTAATTTATGTGATAATTTTTATTTGTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331203" ref_strand="+" ref_description="SGN-U331203        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:27691956-27693968 REVERSE | Aliases: None(evalue: 3e-60, score=227) genbank/nr: unknown(evalue: 5e-64, score=245)">
      <seq>ggacagttatcgactcccatttcttgggcctaaccgccattgttacagtggtttaccaattaatcttttttataatcacagcactcctcaaatttgataaagtcacagatttcgcaggaggtacaaatttcattgtgcttgcagtattaactttgatactaaaaggttcatggaattttcgacaggtggttttgtctgtgtttgtcgtgatatggggccttcgactggggctatttctattaatgaggatattacaatggggcgaggatagacgttttgatgataagcgtgataatctggggaaactggcaatattttggctatttcaggcaatctgggtgtggactgtgagtttaccagtgacagttgttaatgcaagtgaccaccaaccatctgttcagacggtagacatcattggttggattatgtggtctatcggaatatcagttgagatcgcttctgaccaacaaaagttaacattcaaaaactccccagagaacagaggaaagtggtgcaatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49050" stop="47007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48750" g_stop="48704" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48628" g_stop="48559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="117" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48151" g_stop="48084" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="185" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47868" g_stop="47807" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="247" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47690" g_stop="47609" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="329" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47608" i_stop="47501" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47500" g_stop="47307" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="523" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-U331203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48750" e_stop="48704"/>
          <exon e_start="48628" e_stop="48559"/>
          <exon e_start="48151" e_stop="48084"/>
          <exon e_start="47868" e_stop="47807"/>
          <exon e_start="47690" e_stop="47609"/>
          <exon e_start="47500" e_stop="47307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACAGTAAGTAAAAATAGCTCTCTTTTTTTTTGTTATTATTTCTTTCTCATAATTCACAAACAAAAATAATTGTTGCAGGTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAGGTAAATTATTTGCCTTCACTTCTTGTCAAATTTGAATTCCCAAATAAGGTTTATTACATATTTAGTAAATTTCTGGGTTTTCACCTGTTAGTAATTGTGTATAAGTAAAAGAAATAATATATTTAATTTGAACAAAAAATGTCCAGTTGAAATACTTCATTGGGAGTTTAGTTGTTCGACTAAAATGTCTAGTTGAAATACTTCATTAGGAGTTGAGATGTTCGACTAAAACATGATCACTGGCGTATACAGACAAGTTTAAGTGGTTGATTATGTATGAAGCCTTTTTACATAGCCAGTTATATTATATTCGTGGTTCAAAAATGGTACTGCTAAAAAAGCAGCCAAATCACGAACCAATCTATTACTAATACTGCTGTGTGTCATTTTTTTTCATCTGCATACAGGAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAGGTAAGTGAATTTTACCTTCAACTAGCACTTCCATGCTTCACTTTGAGAATTGCTTGTTCTAAATGAGTCAGTTTTTTTATAAGTTTTGATGCACATGTTGGTGGCATTTTGTGCATATTTGGATCAAGAATGAGCTTAATTACATAATAAAACGTGCCCATAAAGTTTATAGCTGAGTTAGAGAGGCGGCTCAAATAGTTTGAAGTCTCTTTCAGGTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAGGTAAAAACACCAATCTATTATATGTCATATGTTTAGCTTGAGAAAGGGACTATTGCCCATTTCATATTAGAACCTTGTTATAGCCTCTTAAGATTATACTTTTTTGTTCTATTCAGGATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAGGTTCATTTTCCTTTTCCAAACCATAAGATATACCACATTATCTTGCATCTGATCGCGGGCTAATGCTTACAGCAGGATGAGATTTTTATAGTTTAATTTATATTACAGGCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAACAAAAGTTAACATTCAAAAACTCCCCAGAGAACAGAGGAAAGTGGTGCAATGTTGG</genome_strand>
        <mrna_strand>GGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA...........................................................................GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAG.......................................................................................................................................................................................................................GTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAG....................................................................................................................GATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAG............................................................................................................GCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAACAAAAGTTAACATTCAAAAACTCCCCAGAGAACAGAGGAAAGTGGTGCAATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314837" ref_strand="+" ref_description="SGN-U314837        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT1G73660.1 | Symbol: None | protein kinase family protein, contains Pfam profile: PF00069 eukaryotic protein kinase domain | chr1:27695554-27700872 REVERSE | Aliases: F25P22.8, F25P22_8 (evalue: 1e-97, score=353) genbank/nr: putative(evalue: 1e-95, score=353)">
      <seq>agagagtgaggtgcggatcatgaaaaggctcagacatccaaatgttgttctgttcatgggagctgttactcgttctccacatctttcaattgttactgagtttcttcatagaggaagtttgtacagattaatccatcgacccaacaatcagttagatgagcgcagaaggttgaggatggctcttgatgctgctcgaggaatgaactatttacacaactgcactccaatgatagttcatcgagatttgaagtcaccaaatctcctagtagataagaactgggttgtgaaggtatgtgattttggactgtcaagaatgaagcacagcacatttctttcttctaggtctactgctgggacggcagagtggatggccccagaagtgctgagaaatgaaccttcaaatgaaaaatgtgatgtatatagcttcggtgtcatactatgggagctctgtactttacagcaaccatggggaggaatgaatccaatgcaagtcgttggcgctgtggggtttcagcaccgtcgtcttgacataccagatgacacggatccagctattgcagacattatcaggaaatgctggcaaacagatccaaagttacggccttcatttactgagataatggctgctctgaaaccactacaaaagcctattactagttcacatgcaccaaaaccaccagttgccagaggccaaccatcgtgaatcttagaagatgcatccgcggagcagggttaatactgaagaacgtaaatagacgtatttttcgttgaatttaaacaggtccgaatttgagctcaagaagctgaaagaagacatcaaagaacctgacagtcagatacttcattttaagccaaattgtgattcttttgttagcagtgtttccctagtcctcaaaaattgtgtatctgccttcccttgtgtattcatattgattccctcttttgtaattaaaaaaaaagaagaaagaattgctttaaaggagctcaagctcctcttttatctatgttttaggtcaacatttatattttgtacctattttattgaaacatgtgcaaatatagctcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52215" stop="48829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51913" g_stop="51813" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="111" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51812" i_stop="51648" i_length="165">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51647" g_stop="51569" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="190" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51568" i_stop="51473" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51472" g_stop="51374" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="289" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93">
            <donor d_prob="0.488" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51280" g_stop="51212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="358" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50281" g_stop="50232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="408" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50049" g_stop="49873" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="585" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49613" g_stop="49129" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="1070" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-U314837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1060</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51913" e_stop="51813"/>
          <exon e_start="51647" e_stop="51569"/>
          <exon e_start="51472" e_stop="51374"/>
          <exon e_start="51280" e_stop="51212"/>
          <exon e_start="50281" e_stop="50232"/>
          <exon e_start="50049" e_stop="49873"/>
          <exon e_start="49613" e_stop="49129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGGATCATGAAAAGGCTCAGACATCCAAATGTTGTTCTGTTCATGGGAGCTGTTACTCGTTCTCCACATCTTTCAATTGTTACTGAGTTTCTTCATAGGTATGTTAAAAGCTATGGGCAGAATTTTATGGATAATATAAAATACATTTCACTTTTATGGTCATCACATCAGTTAATTTGAAGTGGCTGTTGTTGGTTAACTTGGAAATCTGAACTAAAACTTGGTAACAATTTCTTGAATTCAAAATATATTTTGATTTGCAGAGGAAGTTTGTACAGATTAATCCATCGACCCAACAATCAGTTAGATGAGCGCAGAAGGTTGAGGATGGCTCTTGATGCTGTATGTTCGACTTTTTCATTTATAACTTCTCCATATGTTCAATCCTTTTGTATTAGTTTGTGACTTACTGGTGAATGTGCTTTACTAACTTAACAGGCTCGAGGAATGAACTATTTACACAACTGCACTCCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAGGTGGACTTCCTTTTAACTGTTAAACCTTGGGAAATTTGTTGCTTGCTCTTCACTTAGAATCCACGTGATATCTTTTGATTTTTCTGACTCTAGGTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACGGTAAGTTGAAGTCTAATGCTTTTTCTGTATGATCGTCAATAAACAGGCTCCGTAGTACATTCTTAGATCTGTTGGTCTTGCCAATATAGTTTGATATCTTTGATGGTTGATATATTTCTTTTTCTATAGTGTTTTTTGTTCCACATCTTGCCTGGGTATTTCATTGTGGATCCTTTGTCAATGAAACTTGTAATGCTTCCATCCTGCATTCTGGCTAATCAGCCATACATCATTTTATATCGGCCGTTGGAGAAGATAAGGTCAACGCTATCCTAATCCTCTCTGGCCTTTGAATATGTTGTGATTCCCATGTTTCTCCTTCAAAAATGTTGTTGCTATGATCCATGGTTCGAAAAATAACTTCATGATATGTTTACTTTTTCAGGAAGAGTATCTCGGCTTCCAATTCTGTATTGTAGTTTCCGTTTTATATATAAAACTTCGTTTCAGATTTGTCAAAAAAAAGAAGAAAAAGACCTTGTTTGTGCACTCGGTGCATTCTTGTAGAACAAGAGTAGTTTCTATTTTGATATTGTTTATGCTGTTTTATTGGTCATAGCAATAGAGTTGAAAGTATCTCATTCTTCAAGATATTTCAAGGGAATTAGCTGCTTTACTGATATATATTTGCTCATCTTAGTGATTGGTGAATGAACCAATTTTGATGAGAAGTAAAGCGATACTATTTGGTGTTAATGTGGAAGACCTGTCTAATTAAGCTTTGTGCACACAAAATGATTGCAATATTGTGGATAAAAAGTTAACAGTAGCAGTAGTAAACCATTTCCCATTAGATATATTAACTTTACACGCAAGGTATAAAAATTTTGATTATTTCGTGCAGATTGGGAACTTTTTTTTTTGTGCTTGCTATATTTAGTTGTTTTCCACATCCAATCTCATAATTCTTCGAGTCATTTTGTTTCTCAGGCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAAGTATGTCCGATAAACCATATTACCCAACTGAAAAATGTTGAATAATGATGCAGTGAAGTGATTATAGAAAGCCAAAAGTTAAAATTTTCTGGTCCTTATAGGGTGACAGTTTCACAAATAGATTTATTCAGTGGCATTCGGTATATGATTGATGATGTTGGATTATCAATTGTCCCCTGCAGATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAACGTGAGTTTCTGTGGTGTTTCAGTCACTTTACTTTCTATGTTTGCTCGTTGGATCCTCAAAAGTTATACATTTTTGGAGGGTCCAAGCAACATAGACGACTTGTAGATTCTTCATTATCTTTTGTCCTTCACTTCTAAATTTTGGTCAGGCCTCGTGCTGGTTACAATACAACAGAACAGTTCATATAGCCAACCTCAACTAATTCGTGATTGAAACACAGTTGGTTGAATGATCTGATTGTGTTTTTTTGTACATGCAGAGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAG</genome_strand>
        <mrna_strand>GTGCGGATCATGAAAAGGCTCAGACATCCAAATGTTGTTCTGTTCATGGGAGCTGTTACTCGTTCTCCACATCTTTCAATTGTTACTGAGTTTCTTCATAG.....................................................................................................................................................................AGGAAGTTTGTACAGATTAATCCATCGACCCAACAATCAGTTAGATGAGCGCAGAAGGTTGAGGATGGCTCTTGATGCT................................................................................................GCTCGAGGAATGAACTATTTACACAACTGCACTCCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAG.............................................................................................GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA......................................................................................................................................................................................ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC...................................................................................................................................................................................................................................................................AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328006" ref_strand="+" ref_description="SGN-U328006        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G73660.1 | Symbol: None | protein kinase family protein, contains Pfam profile: PF00069 eukaryotic protein kinase domain | chr1:27695554-27700872 REVERSE | Aliases: F25P22.8, F25P22_8 (evalue: 6e-146, score=514) genbank/nr: hypothetical(evalue: 1e-150, score=536)">
      <seq>caaatcagtttaggctcttctgccccagagaatgctcctgcagaagttgtagcatatcggtattggaattacaatgctctaagctatgatgacaagatcctggatggattttatgatttgtatggtgtcctcatggagtccaattcctcgaaaatgccctccctcattgatctgcaaagaacagaagtatcagatcatattagttgggaagccatccttatcagtaaagctgcggactccaagttgttgaaacttgaacagagagctctagagattgctgttgaggagaggtcaaaactcatggatttttcagccagcagtttggtacatgagcttgctgtgctagtttctgaccacatggggggcccagttgtggatccagagagcatgttgcttgcatggagaagtattagttataatcttaaggcaactctagggagtatggttttgcctcttggttctttgaccattggattggctcgtcatcgtgcattgttattcaaggttctagctgatagtgtggggattccttgccgattagtaaaaggaaagcagtatacaggttcagatgatgttgcaatgaactatgtaaagatcgatggaagggagtatattgtcgatttgatggcagcccccggaacacttattccatctgacacatctggagtacatggagactatgaagagtctattctctccatcagtccatcctccaaagatgttgattctcatccaggttccaatagtagtgggattgcttcttcattgggagatcattcagactatggaacggcagacaagagatccaggtttgcggaaagcactagtgcaggaaatgaatctccctcttctggtaatccagaactgcaggaaacttcttctagagctgggcatgcaagatctgcttttacacatgcaagatctccttcgtggacagaaggtgttagctccccagctgcacacaaaatgaaagtaaaggatgcttcacaatacatgattgatgctgccaaagaaaatccacagctagctcaaaaactgcacactgttttacttgagagtggagttattgcaccaccaaacttgttcgctgagatctatccagaacaactagacgtatctcatatagagggaaaatccaggctagaggaaagagacgagttccagaaagtcaggggtcaatctgataagaatcgagcccgcttcttaccccctctgccttatcacagtccatactcaaagggcaatgcacgtggatcattggaacctcagccaaatgtgagagaagttggtgaacagcaagtctctagacagtctgaagtagctccaccaaaacatatgaaaaaagttcctgttgctgctgctgctgccgctgctgcagctgctgttgcctcttcgatggtagttgttgcagccaagactaaccctcagggggaccttcctgtagcagctgctgccacagccacagctgcagcagtagtagcaacaactgcagcagtcagtaagcaatatgaggcacaaggagactgtgaaagagttgatggagatgcagatactgctgtttatgagcaacagggatgtggtcatcaagagcatgaggcagcaggagcaaaatcagagggtgaaaggatatcagataaagtcaccggtaatgatagtactaaatcggatgtgacacttgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58604" stop="53258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58304" g_stop="58239" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58238" i_stop="56891" i_length="1348">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56890" g_stop="56453" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="504" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56452" i_stop="55800" i_length="653">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55799" g_stop="55699" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="605" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55698" i_stop="54821" i_length="878">
            <donor d_prob="0.339" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54820" g_stop="54556" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="870" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54555" i_stop="54481" i_length="75">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54480" g_stop="53829" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1522" r_length="652" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53828" i_stop="53721" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53720" g_stop="53558" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1523" r_stop="1685" r_length="163" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-U328006" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58304" e_stop="58239"/>
          <exon e_start="56890" e_stop="56453"/>
          <exon e_start="55799" e_stop="55699"/>
          <exon e_start="54820" e_stop="54556"/>
          <exon e_start="54480" e_stop="53829"/>
          <exon e_start="53720" e_stop="53558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGTTTAGGCTCTTCTGCCCCAGAGAATGCTCCTGCAGAAGTTGTAGCATATCGGTATTGGGTATGTGCGTATGTGTCTATTTTGTTTCATTCATATCACAACTCTTGGCTTACTTTGCTCTAGGCACCTAAAGGCATGCTTAGCAAATCTGTTATCTTTTAGGTAAATATATTGTATATAGATTTTATTTCACAAAAGAAAAAGAAAAGGAAATGGCCATGTCATTTAATCCCTTGATCTGACTTACCTTGCTGAGGTAAATCGTGTATGCATTTTGAAGTTTGTATCTTCTTTTTTAATGGATGTGGTTGACCACTGCTGAACAGGAAACTACTGATTTAGTTTTTTTAATCAAATTTAGACTTTAGAATTCGAGCATTGTATTATAATGGTAATGGTCATTGTGCCTTGCTGTTGATTGTTTTTGTCATCCCTGAAAGGTATTGGTTAGTAGATTCATTAATCCTTATGCTGAATTAAGCAATTTGATTATCGGCTTTCATCTTTGAAGTCTGGGGATGGCCTCAAGCTGACTGGAGTGTGAACCTTTACATGATCAGGATTCACTTCTCAACAAAAACTAAAAACACTAGGTGATTTCTTGTCATCTACCTAACCATTGTTAAGTCAAACTACCCGGTACTTGTGCTGGTGGGAGGTAGAACTACCCGGTGGAATGATCCAGCTAAGCAAAAGCTGGCTCGGCACCATTGTTGTCACAAAAAGAGATATTGAAAGAAGTATAAAGGAAATTCGAATTGTGTCAGTTAGGAGGCGTACTGTTTATGGAAGGAACACCAATACAATTACTCATATCATAAGGTCCTGGGACATGGTATAAATGAGAACCTATTGGTAATAATGATAAGTCACTGGATATATGAGAATTCAAATGCTGTAGTGAAGGTAGTGGGAGAAAACAAAGTTTAGATTGACTGAGGAATTAAGTGATCAATGAGTATAAGACTTGATGGATATAGTTGAGGAGAGAGAGATGCCAAGTACAACCTCTACTGACATTATTGGACTAGAAATGTTGTAATGATTAGAATGGGGTAAGCTTGATATTGCGGGTAAGAAACACTGCCAAAGACTAAATATATTTTGCCTTCTAGATATCATAGTCATTGGCTCATAGCGATGCACATATTTTCTGGTTTCTACTTCTCCATATTCCTGTCTGGTGTTTAAGTGGTTCCAATAGCTTATCCGCCTTAAACAATCAGCAAGAAGGTATATTAGACAGCTACATTATCTAAAATATGGAGGGATTGATTTTGTTGTGTATAAATTGCTCTATTATTTCGTCAGATCAGTTTCTGTTTGTGCAAAAATTTCCCTTTCCTAGTCCTTATTCCTTTCTAACACATGACATATCTCATATTATAGATTTATCAATGCTTCACAGAATTACAATGCTCTAAGCTATGATGACAAGATCCTGGATGGATTTTATGATTTGTATGGTGTCCTCATGGAGTCCAATTCCTCGAAAATGCCCTCCCTCATTGATCTGCAAAGAACAGAAGTATCAGATCATATTAGTTGGGAAGCCATCCTTATCAGTAAAGCTGCGGACTCCAAGTTGTTGAAACTTGAACAGAGAGCTCTAGAGATTGCTGTTGAGGAGAGGTCAAAACTCATGGATTTTTCAGCCAGCAGTTTGGTACATGAGCTTGCTGTGCTAGTTTCTGACCACATGGGGGGCCCAGTTGTGGATCCAGAGAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAGGTACTAAGCATTTTGGAGTCTTAAATCTATAGCAGTATTTGATTATAATTAGTTTGTGATATCTTTTAGTTTTCTCATGAAGTAATATCCCTTGCCTATTGACAACGAAAATGCCTGAGATACCCGAATATCCTAATCTCACTTCTAAAGCCTAATTTACTTGTATAGTTGGCTAGGACTCGGTACGTAGATGACTATTTAAAGAAGGGAATTCTACTTGTCGTAAAGGATGATTGTTCTGTGGATGGGGAACTTCATATAGAAAAATTAATTCATTTAAGCAGAACGTCAGCATAGGCATGGTTCAGTTCTAATCTGAATTAGCTCCAGTATTTGTCCCCTAGTTCTTGATCTTTCCAACTACTTGTCAGTATTCTGCATCCATTGCTGCTGTGACTGTACCTTATTGTTCTCTTTGATCCCTTTCGCAGATAGCAATTAATTCTGTCTGCATGATATTACTTGTCCATAGTTTTTATTTTGGTTTGATGCATTAGTCATTTCAATGGTGCTATTCTTTGTCAATCTGCTAATAATCACTATTATTTTTATTGTAGGTACTTGGTAATGGTTGGCTTTACCCTTTCATTTGCTATGCTTTGCTTATAACATCACATTTTTTTAATTCTCTTTTGCTTCTGAAAATTATTTAGGTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGATGTTGCAATGAACTATGTAAAGATCGATGGAAGGTTGCTGCTATTCACTTTACCTTCTTTCCTTGATGCTATAGATGCAATCTTTTTCTTTTATGTTCTCTCAGGTGGGGTATACATATTGAAACTTGGTCAGTATTTTCACTTTTCTTGGATATTCTTCCTTGGTTGGTTTGCATTGCACAAATACACCTTGTGGCTTAGTCAGAGAAAGTGTCAGCCTTATCAAACATGAAATGTAGTAACAAAGGGCCAAGGTAGGAGCTACTTAAGGCACATCACACATTGCTTAACGAAACAGGCGCAAACTGAAAAAAAAAAGATTTACATGATTGAAAAGAAAAACTATGAACACAAACACCAAGAATATTAGTAGGAAACTTGAAAAGGAAGTGCAATGAAGGGAAAAACATGTCAATCAAAGTAAATATCAATCTTAAGTTCCTGATCAAATTCAAGATACCTTTTTAAGTTTTTCACTAGTGACTAGTTTTCTTATAGATAATTCTAGAGTTCTGAGTTCCAATTCGTAATTGCTTAAGTGCTCATTAGTAAAGTTCCCTTAATAATTAATATATTTTCTCGCAAGTTACATCTACTGTTTTGCACCAGGCCTCTGAGGCTCATAAACTAACACAAACTTTGAAAAAGCTGTTGGTTGGCTGGTTTACGGCGCATACCTTAGTGCTTTCACTTGATGATCACCCGCCAGGCATTCACAATTAATTTGGACTATGAATTGATTTTTCTAATTTCCTTCACAATTTACAGCATTTTACGGTCTTAAATTGGTGCTGTTGTTTGTATGATGCAAGTATTTGTTGGTACATTGTCTGGGATAAATTTTTGCTGCAATAATTTCTTTTGCTGGGATTATTTTTTTTTTATGTACAAATTAGATGATACATTTGCAGGGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGTACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTTCATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAATCCAGAACTGCAGGTAAAAGCGGAAAAAGAATCTTATAATACCTTCCTTGATTTTACAAAGGCTTACAGTCCTAAGGAGCAAGGACAGGAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAAAATGAAAGTAAAGGATGCTTCACAATACATGATCGATGCTGCCAAAGAAAATCCACAGCTAGCTCAAAAACTGCACACTGTTTTACTTGAGAGTGGAGTTATTGCACCACCAAACTTGTTCGCTGAGATCTATCCAGAACAACTAGACGTATCTCATATAGAGGGAAAATCCAGGCTAGAGGAAAGAGACGAGTTCCAGAAAGTCAGGGGTCAATCTGATAAGAATCGAGCCCGCTTCTTACCCCCTCTGCCTTATCACAGTCCATACTCAAAGGGCAATGCACGTGGATCATTGGAACCTCAGCCAAATGTGAGAGAAGTTGATGAACAGCAAGTCTCTAGACAGTCTGAAGTAGCTCCACCAAAACATATGAAAAAAGTTCCTGTTGCTGCTGCTGCTGCCGCTGCCGCAGCTGCTGTTGCCTCTTCGATGGTAGTTGTTGCAGCCAAGACTAACCCTCACGGGGACCTTCCCGTAGCAGCTGCTGCCACAGCCACAGCTGCAGCAGTAGTAGCAACAACTGCAGCAGTCAGTAAGCAATATGAGGCACAAGGAGGTATGTCCAACTTGTTAATGAATTTGTTGTTTCTTCTTGGCAACAAAATGAAAGCTTGGAGATATGTGCCATTGTCCAGTTAATCTTCTGTATTTCTTAATCATATAGACTGTGAAAGAGCTGATGGAGATGCAGATACTGCTGTTTATGAGCAACAGGGATGTGGTCATCAAGAGCATGAGGCAGCAGGAGCAAATTCAGAGGGCGAAAGGATGTCAGATAAGTCAACTAGTAATGATAGTACTAAATCGGATGTGACACTTGATGATGT</genome_strand>
        <mrna_strand>CAAATCAGTTTAGGCTCTTCTGCCCCAGAGAATGCTCCTGCAGAAGTTGTAGCATATCGGTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACAATGCTCTAAGCTATGATGACAAGATCCTGGATGGATTTTATGATTTGTATGGTGTCCTCATGGAGTCCAATTCCTCGAAAATGCCCTCCCTCATTGATCTGCAAAGAACAGAAGTATCAGATCATATTAGTTGGGAAGCCATCCTTATCAGTAAAGCTGCGGACTCCAAGTTGTTGAAACTTGAACAGAGAGCTCTAGAGATTGCTGTTGAGGAGAGGTCAAAACTCATGGATTTTTCAGCCAGCAGTTTGGTACATGAGCTTGCTGTGCTAGTTTCTGACCACATGGGGGGCCCAGTTGTGGATCCAGAGAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGATGTTGCAATGAACTATGTAAAGATCGATGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGTACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTTCATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAATCCAGAACTGCAG...........................................................................GAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAAAATGAAAGTAAAGGATGCTTCACAATACATGATTGATGCTGCCAAAGAAAATCCACAGCTAGCTCAAAAACTGCACACTGTTTTACTTGAGAGTGGAGTTATTGCACCACCAAACTTGTTCGCTGAGATCTATCCAGAACAACTAGACGTATCTCATATAGAGGGAAAATCCAGGCTAGAGGAAAGAGACGAGTTCCAGAAAGTCAGGGGTCAATCTGATAAGAATCGAGCCCGCTTCTTACCCCCTCTGCCTTATCACAGTCCATACTCAAAGGGCAATGCACGTGGATCATTGGAACCTCAGCCAAATGTGAGAGAAGTTGGTGAACAGCAAGTCTCTAGACAGTCTGAAGTAGCTCCACCAAAACATATGAAAAAAGTTCCTGTTGCTGCTGCTGCTGCCGCTGCTGCAGCTGCTGTTGCCTCTTCGATGGTAGTTGTTGCAGCCAAGACTAACCCTCAGGGGGACCTTCCTGTAGCAGCTGCTGCCACAGCCACAGCTGCAGCAGTAGTAGCAACAACTGCAGCAGTCAGTAAGCAATATGAGGCACAAGGAG............................................................................................................ACTGTGAAAGAGTTGATGGAGATGCAGATACTGCTGTTTATGAGCAACAGGGATGTGGTCATCAAGAGCATGAGGCAGCAGGAGCAAAATCAGAGGGTGAAAGGATATCAGATAAAGTCACCGGTAATGATAGTACTAAATCGGATGTGACACTTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340016" ref_strand="+" ref_description="SGN-U340016        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G18160.1 | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr1:6248786-6254032 FORWARD | Aliases: T10F20.16 (evalue: 3e-13, score=73.2) genbank/nr: gi|22329643|ref|NP_173254.2| MAP kinase -related [Arabidopsis thaliana](evalue: 2e-11, score=73.2)">
      <seq>atcttcatttgcattttcatacccttttcttggtttgctctagctgtttaagggataaaggaacaatcttttttggtttaggctgagttcttgaatttgtgttcaagattgagtctttttgctgctcagtagggaagtggtaactggagtttcttcacaaacgaagtaaagtttggttcttggatttgatttggttaaaaacaagcttaaactatgcagttcttgttattacaggttttaaggtaagagatttgtaactgtgattcatgattgtagtgggacaatggagagtgttgaggaatgagaaagtcctatacgttggtggttaaggagataggtggtctccgtcttggatagttcatcaccagtgagctagcttccggagttgagttagactcgggatccatttatttactgagaggtttatggccagcttttttgtttctttagtacaactactaagcattgtggtttagtgaatacaacaatgaaaaattttctcaagaaacttcatattgggcccaaccaatcagaagattcagaaggatcaacatcttcctcaaggagcaagaaattaactgatgtttcatcacctgaaaagcattcaagctctagaagctatcatgggtctgataataaacctttttcagcaatttcaggatggttaaattcagttacaaataggcatagtcccagtcctccgtcttcctcaaatgtgaatagagggaatagaatggaacattctgactctgtcagtattgggggcactgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="-" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59517" stop="58144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59217" g_stop="58444" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="-" ref_id="SGN-U340016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59217" e_stop="58444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCATTTGCATTTTCATACCCTTTTCTTGGTTTGCTCTAGCTGTTTAAGGGATAAAGGAACAATCTTTTTTGGTTTAGGCTGAGTTCTTGAATTTGTGTTCAAGATTGAGTCTTTTTGCTGCTCAGTAGGGAAGTGGTAACTGGAGTTTCTTCACAAACGAAGTAAAGTTTGGTTCTTGGATTTGATTTGGTTAAAAACAAGCTTAAACTATGCAGTTCTTGTTATTACAGGTTTTAAGGTAAGAGATTTGTAACTGTGATTCATGATTGTAGTGGGACAATGGAGAGTGTTGAGGAATGAGAAAGTCCTATACGTTGGTGGTTAAGGAGATAGGTGGTCTCCGTCTTGGATAGTTCATCACCAGTGAGCTAGCTTCCGGAGTTGAGTTAGACTCGGGATCCATTTATTTACTGAGAGGTTTATGGCCAGCTTTTTTGTTTCTTTAGTACAACTACTAAGCATTGTGGTTTAGTGAATACAACAATGAAAAATTTTCTCAAGAAACTTCATATTGGGTCCAACCAATCAGAAGATTCAGAAGGATCAACATCTTCCTCAAGGAGCAAGAAATTAACTGATGTTTCATCACCTGAAAAGCATTCAAGCTCTAGAAGCTATCATGGGTCTGATAATAAACCTTTTTCAGCAATTTCAGGATGGTTAAATTCAGTTACAAATAGGCATAGTCCCAGTCCTCCGTCTTCCTCAAATGTGAATAGAGGGAATAGAATGGAACATTCTGACTCTGTCAGTATTGGTGGCACTGATGC</genome_strand>
        <mrna_strand>ATCTTCATTTGCATTTTCATACCCTTTTCTTGGTTTGCTCTAGCTGTTTAAGGGATAAAGGAACAATCTTTTTTGGTTTAGGCTGAGTTCTTGAATTTGTGTTCAAGATTGAGTCTTTTTGCTGCTCAGTAGGGAAGTGGTAACTGGAGTTTCTTCACAAACGAAGTAAAGTTTGGTTCTTGGATTTGATTTGGTTAAAAACAAGCTTAAACTATGCAGTTCTTGTTATTACAGGTTTTAAGGTAAGAGATTTGTAACTGTGATTCATGATTGTAGTGGGACAATGGAGAGTGTTGAGGAATGAGAAAGTCCTATACGTTGGTGGTTAAGGAGATAGGTGGTCTCCGTCTTGGATAGTTCATCACCAGTGAGCTAGCTTCCGGAGTTGAGTTAGACTCGGGATCCATTTATTTACTGAGAGGTTTATGGCCAGCTTTTTTGTTTCTTTAGTACAACTACTAAGCATTGTGGTTTAGTGAATACAACAATGAAAAATTTTCTCAAGAAACTTCATATTGGGCCCAACCAATCAGAAGATTCAGAAGGATCAACATCTTCCTCAAGGAGCAAGAAATTAACTGATGTTTCATCACCTGAAAAGCATTCAAGCTCTAGAAGCTATCATGGGTCTGATAATAAACCTTTTTCAGCAATTTCAGGATGGTTAAATTCAGTTACAAATAGGCATAGTCCCAGTCCTCCGTCTTCCTCAAATGTGAATAGAGGGAATAGAATGGAACATTCTGACTCTGTCAGTATTGGGGGCACTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313295" ref_strand="+" ref_description="SGN-U313295        Tomato 200607 #1 [99 ESTs aligned] arabidopsis/peptide: AT1G48630.1 | Symbol: None | guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative, contains 7 WD-40 repeats (PF00400); very similar to guanine nucleotide-binding protein; activated protein kinase C receptor; RACK1 (GI:9294068) {Arabidopsis thaliana}; similar to WD-40 repeat auxin-dependent protein ARCA (SP:O24456) (Arabidopsis thaliana); | chr1:17985448-17986995 REVERSE | Aliases: F11I4.18, F11I4_18 (evalue: 4e-159, score=557) genbank/nr: gi|4589834|dbj|BAA76895.1| LeArcA1 protein [Lycopersicon esculentum](evalue: 0, score=665)">
      <seq>ggcgattggcggccaaatcggccgaattctctccattttcatctccgcctctcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggaatctcaccaactgtaagctcaggtctactcttgcgggtcacagcgggtatgtgaatactgtggccgtgtccccagatggttcgttgtgtgctagcggagggaaagatggtgtcatattgctatgggatttggctgaagggaagaaactgtactctcttgatgctggctccattatccacaccctctgttttagcccgaataggtattggctctgtgctgctactgaatctagtatcaagatttgggatttggagagcaaaagcatcgtggttgatcttaaagttgatctgaaacaagagagtgaaatgttcggaactgctgctaccgattccaaaaccaaggtcatatactgcaccagtttgagctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaagaggatcgacgcgagccatttggccaatactgaattaaaagtcttttagattttgaagattctccgtgtttttcattattatgaggcctcaactgtttcaattttggatttttattttgttacattggatatctgtcttgctataaatctaagttgttttgcttaatcttcaaaaaaaaaaaaaaaaaagagtttcttgcttgttgtttacctccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77521" stop="80873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="78779" g_length="959"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="985" r_length="959" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80259" g_stop="80538" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="986" r_stop="1265" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1310" polyA_stop="1330"/>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U313295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1239</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="78779"/>
          <exon e_start="80259" e_stop="80538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</genome_strand>
        <mrna_strand>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334259" ref_strand="+" ref_description="SGN-U334259        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G18130.1 | Symbol: None | guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1), identical to guanine nucleotide-binding protein; activated protein kinase C receptor; RACK1 (GI:9294068) {Arabidopsis thaliana}; contains Pfam profile: PF00400 WD domain, G-beta repeat (7 copies) | chr3:6210912-6212439 REVERSE | Aliases: MRC8.11 (evalue: 3e-84, score=308) genbank/nr: gi|4589834|dbj|BAA76895.1| LeArcA1 protein [Lycopersicon esculentum](evalue: 3e-102, score=374)">
      <seq>tcctttctctgccaccaaaggtgatttcactgacggccgccaccaatctgagaaaatgtcgcaagaatcactagtcctccgcggtaccatgaaagcccacactgactgggtcactgctattgcaaccccaattgacaactccgacatgattgtcacctcctccagggataagtccatcatcgtctggtctttgactaaagacggctcacaatacggtgtccctcgtcgccgtcttaccggacatggccatttcgttgaagatgtcgtgttgtcgtctgacggcatgtttgcactctccggttcatgggacggtgagctccgtttatgggatcttcaagctggaacaactgctcgtcgtttcgttggacacactaaagatgttctctctgttgcattctctgttgacaaccgtcagattgtctctgcttcccgtgacaagaccatcaagctatggaacacactcggtgagtgcaagtacacaattcaggaacaggattcacactctgattgggtttcttgtgtccgttttagcccaaataatcttcagcccactattgtgtctggttcatgggatcgcactgtcaaaatctggagtgctgatggaagcacacttttcagtggctatacagatggtctgattagagtttggggaattggacgttattagggaagaaagagatcgacgcgagccatttggccaatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77546" stop="80701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77846" g_stop="78433" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78434" i_stop="80281" i_length="1848">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80282" g_stop="80401" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="708" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U334259" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77846" e_stop="78433"/>
          <exon e_start="80282" e_stop="80401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAGGTTTGTTTTATCTTTCAAATATCCCAACGTTAATTCTATTTTATGTCAATCAATACTTCATTGTTGTTAATATCTAATAATCAATCAATTATTATATCAGCCACTTTTGTACTCGTTCAAATACTAAGAAAATGATTTAAAAATGATTTTTAAGGGAACATTTCTATTATGGAAATGATTTCCACTCCATATGGAACTGGTTAGGACTATATAGGATACTTGTAGCTTTTGCTTGTAACTTTTTATTTTGAGTTTTGGTGCCATGAGAAACTTTGTATGAAGCATTGCAGGATATGGAGCTTTCCAGCCACTTGTTTTTGTTTGTGGTCAGGAAATTGCAGTAGTAAGGCTGTGGAAGTTCAGAATATCCATTTTTTGTAGTATCGATATTCTGATTTTTAAGTTGTTAATGAAAGGCTATGGAAGTTCAGAGACAGGGTAATAGTCTAAATGATATTACATGTCACATTTAAGTGGTGTGGGTGAATGATGGCGAATGGTGCTATAAGAATGTGTGACCAAAGGTCAATTTCACAGAGCGGTGGTTAGATCAATATTGTTTTTTCAGGTATAGTGTTAGCAAGTCAAGAATTGTGTTGGCAATGTAATAACGAAGTTAAACAGAGTGGGTCTTGTGGCAGACAAGCTTATAATGATTTGGGCATGTCAATCAGAGGTACACAGACGCCCTAGTAAATATGAAAGATTGACCCTAATAATAGATAGGAGAGATAGGATGAAAAATAACACGGGGAGGCGATTAGACATGGCCCTAACTAGGAAGGGTAGAACATAGAAGGGTAGTAGGTGGCCGATTGTTGTCACACATTATGAGGGTTAGGTGGGGGTGGTCTCCTCCCCTCTTCTCTTCGTTAGTAGTATTATCTAGTAGTCACATAGTCTCTTATTCTTCAATTTGTATTACTAATTGTGGTGCTTTATTTACATTATGTCTTTTTATTTTGCTGCCATATTTTTCTTGCAATCCTACTTTTAAAGCATTTGTTTGAGCTAAGAGTCTATTTGAAATAACCTCACTTACCCCACAAAGATGGGTAAGGTTTGTGATTTCTACCCTCTGAGTCCTGAGTTGTGAGATTACACTGGTGAGATTACAGTGGGTATGTTGTTATAGTATCGATCGTCTATGTGTAATTTGTCACTTGTGGTGTCCTGTATTTCCTTCTCTTTTTGGTAGATAAAGCACTTTTTTGTAATGCTAATTGTACACTGTATCTGCAGTGATAGAATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCAGCAGATAGGATTAATATGCCTCTGAATTGTAAAGACGTATTTGCTCCTATAGTTTTTCTGTTTTCGAGTCTGTTACTATGTACTGGACTGCGCCACTGTTAACCCAGTTACTGTAATGTGATATTTCCATTGCTGTGACGTGAATGATGAATCTAAATATAATTGCATCTAAATTGGCAGGTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAA</genome_strand>
        <mrna_strand>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAAGAGATCGACGCGAGCCATTTGGCCAATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326291" ref_strand="+" ref_description="SGN-U326291        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | EF-1-alpha-related GTP-binding protein, putative, similar to EF-1-alpha-related GTP-binding protein gi:1009232:gb:AAA79032 | chr1:6213718-6218328 REVERSE | Aliases: T10F20.8(evalue: 4e-43, score=171) genbank/nr: gi|1009232|gb|AAA79032.1| EF-1-alpha-related GTP-binding protein (evalue: 2e-67, score=257)">
      <seq>gcacgaggtcaccgcaagcacaaaccctacgcgtcctctcactcaattaaccgagccccatggatattgaagaggacatcaaggcgctgcagcttgattcatctgaagatactgtgttggtcaacgtggaagatgctagacctggtgaagctataaaacatgataaagttgatggagaggatagttttatggaagaagagaggaagactgatgatgttgggaaacctgatatgccggaagatggagagttaagagatgaagcacatccagacttaaagccagagcatgtcgatccaaagggtgtctctggaaaagaaagttctcccccagaagatatgcaggtggaggttgaagtcaataaaaagaggcatctgaatgtggtatttattggtcacgtggatgctggaaagtctactattggaggacaaatactattacttagtggtcaagttgatgaccgtacgatacaaaagtatgagaaagaagcgaaggataaaaacagagagagctggtatatggcctatattatggatacaaatgaagaagagagggtgaagggaataacagttgaagtatgaagagcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0159P11-iSt0m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0159P11.1" temp_strand="+" temp_description="C06HBa0159P11.1  AC219214.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0159P11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81014" stop="88001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81307" g_stop="81369" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82638" g_stop="82679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="105" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82859" g_stop="82930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="177" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83918" g_stop="83987" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901">
            <donor d_prob="0.812" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84889" g_stop="85041" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="399" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86009" g_stop="86120" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="511" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87517" g_stop="87562" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="557" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87670" g_stop="87701" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="589" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0159P11.1" gen_strand="+" ref_id="SGN-U326291" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0159P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81307" e_stop="81369"/>
          <exon e_start="82638" e_stop="82679"/>
          <exon e_start="82859" e_stop="82930"/>
          <exon e_start="83918" e_stop="83987"/>
          <exon e_start="84889" e_stop="85041"/>
          <exon e_start="86009" e_stop="86120"/>
          <exon e_start="87517" e_stop="87562"/>
          <exon e_start="87670" e_stop="87701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGGGTATGTAGCTTTTCTCGCTTGCTGATTTATATGTTATGTATCAGATCTTCACTTCTTCTATCGATTTTTCAATCTAGGGTTTATCGTCGCATTTAGTCCATTATTCTTTTGGCGGAATTTGCATACTGAGTTAGATTAGAAGCTATTTACTTTGACTGATAATCTAATATCCTTATAGCTTATTTGAGAAGAGCTCAGTAGTCGATTTCGTAGAAATTCAGTAAAAGACAATTCGCTTGTTGGAGTTTTTAATGATAGAATATCTGTTCATGGTTTTTCAGTGTTTGGTCACCTTGATATATTTCCTGGATTATGTCCTTTGTTTGTTTGTATGTTGTAATAGTATATCCTTAGGTTAATAATGGTGAACTCTGTAAGTTTCAATCTATACTAATTTATTAACTATTTGATTTTGGTTTAGTCGAATTAATATAGAATAAAGTTCTCTTTTCATCAAAATTCAACAAAAATCTTTTGAAAAACTAATACATAGGCGATTTGTAGCTTAAAAAGGAAGTGTCTTTTAATGTTAGGACTAAGGAAGTCCTTTTCTTATAATAACAATTTAATTCAATTAGTAGTTAGGAGTTATTGGGGTTAAATTGAATAATGTCTACAACAACTAAACATATACATTGTAATCCTACTTTGCATAATAACATCTATTTTTAAATTATTATCTTGAAAATTCTTACTTTGTATCTTATGTATTATCATCATGAACTAAATGTTTATGATATGTTTGTGCCATTCAACCACTTTTCACTAACAACATGATTTATTCCCTTCAATTTTCATGAAGTTTCTGTTAGTACAATGCATAGATAAGCAAGATGTCAATTGAGATTTTGTTGAAGCAATTAGAGTTAATTTGCTCAAAAACATAGGACAACAGTTTGCTATGATTAGTTTTCTTTAGTATTGGGTTCTAATGTTCATATTACTAATAGCATCATTGATGTATTGTATCTAATTTATAGTCAACTAGTTAAAATGATATGTTTTAAAAGAAAATATCTTTTACCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCAAAAGAAAAACATTTTTACCGATACATGTCAGGTGTTCGATGGATAACATATTCCTCCATACCGAACTCACCTTCTATAGATAATGACTTCTGTGATGTTTTTTTTTTTACTGGGTTTTCTCCCATTTGTTGATAACTTCTGAGATTGTTGGGGTATGACGGATTCATGGATTTCATACTTTTGGTTGTTTGATGTGATAGATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTGGTATATCATTAATTACAGCAGTTCTATGATTTGTTCTATTCTTATTGCCACCTAGGTTTTTTTATGTAGTCATAGATTGTTTATCCACTTATCATTGAAGTCGACCATTAATGGCTTACATTACTTTACCATAAGGAAATATGGTTTTGAGTGTCTAATCTGTGATTGAATGTCAGCAGAAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAGGTTAGTAGCAACTTCACTGATGTCTTGCCTTGCTTGTTCTTGAGTGGCTATTTGCTTGTAGTGTTTAGAAGTGGTCTTTTCATTGCGATGGTCTGATGTCAGTATATTATTGCTAAGTTCATGATTTATATTGATTTGTAAAAAAGTCTATAATTAAATTTGATCCCTCTCCCTCTTCCGCTTCTCTCCTTCCCCAAGATTTGTAATTATTATCCACATCATAGAAACTTCTTGTGGTTTAAAAGTAAGGCCTGTTCTTGTGTATATGAGATGCTTCCTTGCTCCTTTGGGCCTGGGGGTCCATGTAAGACTTCTCTTCTTAGTTTTCTTTGGTGGACTCACATCATTGAAACTTCTCGTGGTTTAAAAGTTAGGCCTGTTGTTGTGTATATTTAGATGCTTCTTTGCTCTTTTGGGCCTCGGGGTGCATGTAAGACTTCTCTTCTTTTGTTTTCCTGCTTGGTAGTTAGGTATTATCCCCATAGGACAATTTTTTTTAAGAAGAAATCCTTTGTTGGTCTTATATTTATATGCGATCATGTGATGTTACTGTTAACTTTGACATTGTCGTTTTCTAAATCTTGTTTCTTTGGGGGCGATTGTCTTAAGTATCTTTGACAAGGTTTAGAGTCCTTCAAATCACTACTTTTAGTAGGCTTCATGAAAGTTTGTTGCTTTTAGTTTTGGATGGTAACGCACACAAGAAACTACCTACAGAGTTCAAAAATCATGATTTCCCTATTTACTTACTTTTTATTTTTTCCAAAGGAGAGAAAATGTTCCTTTTTTATATTGTAACTTGCAAAGGCTATTAGACTTTGTTCTTAGTTTCTGCTAATATCTTTCTAAAATCTATTTTTTGATACCTTGTACATTTGTTCTTTCATATATTATATGTCGATATACTTTTACCCCCTGCTTTCATGTCCTACATTGATATCATTAGGAACTTTCTGGATGACGTTTTGATTGTTTATTAAATGGTAGAGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAGGTAGATTCATGAACAGATTATGCATCATCTGGTTCTTGTGGAGGTTATTCTTTTGTGTTATTAAGTGATTTCTTTTGATATGCTTGACCGGGAAATCTGCATCTATAAAACAACTTTTTGTCCTAGTTACGGGATTCTATTTTATCATAAATCTGATCCCCGTTTTTTCTTTTTCTTATAAATGAATAGATCTCTTTACTTTATGACTTAGATGTCTCGTAATTTCTCAAAAAAGTGATTCTATTGATGTGATTTGGTATGAGATCAATGATCTGGATGAGTTTCCTAATTTTCATCTCCTCTTGATTGGGAGGGTTTTTGAGGTGGGAGTAGGTAAAAGAATCATGCTGAAATTAGCTGAAGGGGCTCATGTCATCTGCGCTGAAATGATGGCTTTATGTTGCAGAAAGATGTCAGTGTAATGGGGATTGAGCCTTTTCTTTTAACTGTATTCACAAAGAGTAATCTTGTGGGCCTTACTGTTCAAAAGAGGGAGATCAGTTGCTACTTGTGCCTCTCTCTCTGGTGTTCTGCTCAGCAGAGAGGAGAGAGACTGGTCTCACAGCTTGGCAATTTTGTAGTCACAGACATTGATGTTTTGGTGATTCAGCTTATACGAAGATTATTGGGTACTATATCTATGGAAATTTACCTTGAGAGAATCCTTATTGAGGTCTTCAAGTAGCCACCCTTCAATGATAATTGTTCCTAACTCTTTTGTTGACACCTCCCTACTTTGTTACATTACTCATAGGGCATTTTGGTGTATTCAAGTTTTACAAAAGGGAGAACTTTTGGGGTATTTAGAGTTTTAACTGTTTTGGTGAAAAATGATATCTTTAGATTACTGAAACCTTTATTCAAACTGTTACGTAATTGTTTACTTCATTGACGGTATCAGAGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGGGTAAGTCTTCCTTTTTCTATTTACTCTTTATACACTTGATGCATGATTGTCATTGTAGTGAAGCTTGATGAGTACAAATCTCCCAAGTATCAAGAAGGAAAATTAGGCAAACAAAATAATATGGTAAATGAGGAAATAACTATTGGTACAATGTAGTTTTATTTTCTGTCTTTTTTGAAATTCTTTTATGGTACTGATATTTTTTTATCATTAAGGACTTATAGGTCCTGCCCGTTTATTTATTTCCCCCAAAATCGTATGTCGTCTTACCTCTCAAACATATCTTGAGCGTTTTTAGGTACTCTGTGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTGTTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCGTTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTAGGTAAGCTGTATCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCGGATCGGATGTAGTACTCTATGCATCTTTCCTCAATCTTTTTGGTATTTTATGTCTGCATTTTTTTTATTTATCTTTTCTCCCCATTCTTGATTTGGTAAAACATTAGCTGTTGCTTGATGAGAATTGAGATGTCGGTGTGGCGTGGAAATTGAAATGGCGATGTTTGAGTTTTTGGTTAAGTTGGTAAGCTGTGTCCAACTTATTGAACTAGTAAAATCCATTTTTGCATGTGCAGTATGTCAGATACAAGATCACTTTTTACTTATTCCAATTTTTAAAAAAGGATGCAAAATCGCTTTCTTGTTTTTTATGTGAAAGTTTTCATTCGCAAAGCTGATTGGTAACTGGTAAGATGCGATCTAATTGTTTAACTGAGAAACATCATATATTGTTACTTAGAGTTCTCCATATCACCTACAGATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTGGTAAGGTTTACTAGCTTACTATAGTCAAGATATGCTGTCAGTGTTTCTTAATTGATGAACTTGTGTATGACTTTTGCAAAATTCATTGTGGCCTCTTGGTTTGTTAGATAACCTGCGATACATTCTATGAAGCTTGGTTTATCATGATTTTCATTAGTTAGACAAATTTTGGCTGTTGAAGTCACAATTTACCGAGTACCAATGTCAAATGGACCATGACTCAAATAATTCTCAAATAAACTACTTGCATTGTCCACTCTTTTCAGGATCTCATCCAATACGTAGGTTATCTGCAATTTATACCTTACCATTTTAAAGAAGAAGTATGTTATCTACAATATTACTTGCATATTGTGATGGTTTGCTTTCTGTGAATCTTTTGTTCAAATGTGAATGACAAGAAGTGCAGCCACTGATGGCAATAATTAGATATGATAATTGCAATCAAGGAAAAACTAGTTGTTGTTTCACTTTTAATGGATTTGTTAGGTTCACTAATTAGTAATTTAGTTTTGCATTCCGAATTATGTGCTAGTTAATTTGGAAGCTCTGAGAAGTGATCTGGTTGCTTTAGAGCATTTTGTTATTTTAGAAAGCATTGAGTATGTTGTGCAGTATTTTGCGTGTGTGCTGAAGGGTCTTTTTCTTTTTGAAAACAGTTGTTGTGCTTAAGATTCTGTTGCCACCATTAGCTTCTTTGGGTGTATATTGAAGATTTAGCCCTTCTATTTGTCATTTTATTGCATGATGATAACTGAGTTGCTGTTCTAATGATTGGTTAGCCTCATTAGAGAGCTCAAGTTACAACCCAGTAAAACTTATCATCTGATGTTCAAGTTTAGGATATTGTGGCATTTTTCTGTTAAGACTTCCATGAAATGATTGATTTCTTATAAACCAGCCATCTGCAATTCTGCTGGTACTTTCTTTTAATTGGAGTTAGAATTTGGTGGATGTGAAATTGTACTATCAAAGCTTGGATCATTGTTTACTGCTAGAACTCTTGAAGTTCTGAGTTTGGTTACGGAACATAGGGTTACTAGTTCCTGTTAATTCTGATAATCTAGGCACATTCCTAGAGTCCAACTGACCTTTCTATCTGCAAGAGGTTGTTGCAAAGATAGATGCTCATTCTTGTTTTTTTCGGTTTCTTTAATTCTGAAGCTAGTTGTGTGTTGTTTGCATGGTTCCTGATATTTCATGCTTGATTATTCTTGAGATAGAATATCTCTTGATTCCATCTTGTTAACTTCGAGTACACAATTATCGATAATGAGTTTTGAAGAGGGTCCACATCAGTTTAGTTTCTTGCATGTGGAATGATCTTCCACACCGTCTTTGATTAATTATTGCTTTTCCTTTTAGTTTTTAACTTTCCTTTTTCAATGTCTTTTAGGTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAGGTATTGCTTTATCTATTACTTAAATTGGTATATTACCTCTTTTTTGGGGCTGGTAATGTGGAGGAGCTTACGAGTGATTCTGTGTTTCTTGGTCACTTCCTTTTCAGGGAATAACAGTTGAAGTAGGAAGAGCACATTT</genome_strand>
        <mrna_strand>GCACGAGGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG...................................................................................................................................................................................AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGG-AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAG...........................................................................................................GGAATAACAGTTGAAGTATGAAGAGCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23477" PGL_stop="25787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23477" e_stop="23611"/>
            <exon e_start="24125" e_stop="24447"/>
            <exon e_start="25120" e_stop="25215"/>
            <exon e_start="25306" e_stop="25787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.963"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.963"/>
          <exon-intron don_prob="0.898" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="23477" e_stop="23611" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23612" i_stop="24124" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="24125" e_stop="24447" e_length="323"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24448" i_stop="25119" i_length="672"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25120" e_stop="25215" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25216" i_stop="25305" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="25306" e_stop="25787" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23477" stop="23611"/>
              <exon start="24125" stop="24447"/>
              <exon start="25120" stop="25215"/>
              <exon start="25306" stop="25787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATCATTTTCCCCCTCATTTGCATGTAAAACTCCATATCCCCCAAGAAATACACAAAATAGGCATTACCTTAACAATATCCTCTCCTAATTAGGCAGGGCTAAGCTCCTTTATTAAGAAGATCATTCAAAT : ATTGACTAGAGGAAGACTTTCACTTGGCGGGGAAGGTGTTAAGGAAAAAAAAAACATAAAAAAAAAATAAATTCTTTTTCTTATTAATTAAGTAACTGCTCTATTACTGTAATCAATAAGTTTTTTTTTTTTTTTGAAAAAAAAAATATAAAGAGGGGAGTTTATATTTTGTTTAAAGCAGCCGAGGAAGGAAGAATATAGGAAAATCCTTAATGGACAATCTTTTTGGTCTTTTAAGAATCAAAATTAAGAGAGGTATAAACCTCGCTGTACGTGATGTCCGCAGCAGTGATCCTTATGTTGTTGTCAAAATGGGTAATCAG : AAACTGAAGACGCGAGTTATAAAGAAGGATGTTAATCCTGAATGGAATGAATATCTTACCCTTTCTGTATCAGATGCAAATCTTCCTGTGAAGCTG : ACTGTATACGATCACGATAGGTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCAAACCATTTTTAGATGCTTTGAAAATGAATTTAGATTCTCTCCCATGTGGCACAGTGATCACAAGAGAAACGCCGTGCAGGACAAACTGTCTGTCTGAAGAGAGCAAAGTGACATGGCAAGACAACCAAGTTGTGCAAGATTTGTGCCTCAGATTGAGAAATGTGGAGTGTGGAGAGGTAGAACTTCAACTTCAGTGGATCAATATTCCTGGAAGCAAACGTTTATAGAGATTTATCTCTTCTGTTGTTTATTCTAACCTGATTTGCCCCTATATATAGGCCAGAATTGATAAATATGCCTTTGTACAACACAAGGTCTGCACTCTGCAGCTTAGTAAAATCTGATTTCAAACATTCTATATATATATACTCTGTTTGCTGAATATGGAGCTACAGATGATATATACTTCTTATACAAA</gDNA_template>
            <first_frame> I  S  S  F  S  P  S  F  A  C  K  T  P  Y  P  P  R  N  T  Q  N  R  H  Y  L  N  N  I  L  S  *  L  G  R  A  K  L  L  Y  *  E  D  H  S  N  :  I  D  *  R  K  T  F  T  W  R  G  R  C  *  G  K  K  K  H  K  K  K  I  N  S  F  S  Y  *  L  S  N  C  S  I  T  V  I  N  K  F  F  F  F  F  E  K  K  N  I  K  R  G  V  Y  I  L  F  K  A  A  E  E  G  R  I  *  E  N  P  *  W  T  I  F  L  V  F  *  E  S  K  L  R  E  V  *  T  S  L  Y  V  M  S  A  A  V  I  L  M  L  L  S  K  W  V  I  R :   N  *  R  R  E  L  *  R  R  M  L  I  L  N  G  M  N  I  L  P  F  L  Y  Q  M  Q  I  F  L  *  S  * :   L  Y  T  I  T  I  G  S  A  W  M  T  K  W  E  M  Q  N  L  I  S  N  H  F  *  M  L  *  K  *  I  *  I  L  S  H  V  A  Q  *  S  Q  E  K  R  R  A  G  Q  T  V  C  L  K  R  A  K  *  H  G  K  T  T  K  L  C  K  I  C  A  S  D  *  E  M  W  S  V  E  R  *  N  F  N  F  S  G  S  I  F  L  E  A  N  V  Y  R  D  L  S  L  L  L  F  I  L  T  *  F  A  P  I  Y  R  P  E  L  I  N  M  P  L  Y  N  T  R  S  A  L  C  S  L  V  K  S  D  F  K  H  S  I  Y  I  Y  S  V  C  *  I  W  S  Y  R  *  Y  I  L  L  I  Q  </first_frame>
            <second_frame>  F  H  H  F  P  P  H  L  H  V  K  L  H  I  P  Q  E  I  H  K  I  G  I  T  L  T  I  S  S  P  N  *  A  G  L  S  S  F  I  K  K  I  I  Q  I :   L  T  R  G  R  L  S  L  G  G  E  G  V  K  E  K  K  N  I  K  K  K  *  I  L  F  L  I  N  *  V  T  A  L  L  L  *  S  I  S  F  F  F  F  L  K  K  K  I  *  R  G  E  F  I  F  C  L  K  Q  P  R  K  E  E  Y  R  K  I  L  N  G  Q  S  F  W  S  F  K  N  Q  N  *  E  R  Y  K  P  R  C  T  *  C  P  Q  Q  *  S  L  C  C  C  Q  N  G  *  S   : E  T  E  D  A  S  Y  K  E  G  C  *  S  *  M  E  *  I  S  Y  P  F  C  I  R  C  K  S  S  C  E  A   : D  C  I  R  S  R  *  V  Q  H  G  *  Q  N  G  R  C  R  I  *  Y  Q  T  I  F  R  C  F  E  N  E  F  R  F  S  P  M  W  H  S  D  H  K  R  N  A  V  Q  D  K  L  S  V  *  R  E  Q  S  D  M  A  R  Q  P  S  C  A  R  F  V  P  Q  I  E  K  C  G  V  W  R  G  R  T  S  T  S  V  D  Q  Y  S  W  K  Q  T  F  I  E  I  Y  L  F  C  C  L  F  *  P  D  L  P  L  Y  I  G  Q  N  *  *  I  C  L  C  T  T  Q  G  L  H  S  A  A  *  *  N  L  I  S  N  I  L  Y  I  Y  T  L  F  A  E  Y  G  A  T  D  D  I  Y  F  L  Y  K </second_frame>
            <third_frame>   F  I  I  F  P  L  I  C  M  *  N  S  I  S  P  K  K  Y  T  K  *  A  L  P  *  Q  Y  P  L  L  I  R  Q  G  *  A  P  L  L  R  R  S  F  K   : Y  *  L  E  E  D  F  H  L  A  G  K  V  L  R  K  K  K  T  *  K  K  N  K  F  F  F  L  L  I  K  *  L  L  Y  Y  C  N  Q  *  V  F  F  F  F  *  K  K  K  Y  K  E  G  S  L  Y  F  V  *  S  S  R  G  R  K  N  I  G  K  S  L  M  D  N  L  F  G  L  L  R  I  K  I  K  R  G  I  N  L  A  V  R  D  V  R  S  S  D  P  Y  V  V  V  K  M  G  N  Q  :  K  L  K  T  R  V  I  K  K  D  V  N  P  E  W  N  E  Y  L  T  L  S  V  S  D  A  N  L  P  V  K  L  :  T  V  Y  D  H  D  R  F  S  M  D  D  K  M  G  D  A  E  F  D  I  K  P  F  L  D  A  L  K  M  N  L  D  S  L  P  C  G  T  V  I  T  R  E  T  P  C  R  T  N  C  L  S  E  E  S  K  V  T  W  Q  D  N  Q  V  V  Q  D  L  C  L  R  L  R  N  V  E  C  G  E  V  E  L  Q  L  Q  W  I  N  I  P  G  S  K  R  L  *  R  F  I  S  S  V  V  Y  S  N  L  I  C  P  Y  I  *  A  R  I  D  K  Y  A  F  V  Q  H  K  V  C  T  L  Q  L  S  K  I  *  F  Q  T  F  Y  I  Y  I  L  C  L  L  N  M  E  L  Q  M  I  Y  T  S  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24301" stop="24447"/>
                    <exon start="25120" stop="25215"/>
                    <exon start="25306" stop="25596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRGRKNIGKSLMDNLFGLLRIKIKRGINLAVRDVRSSDPYVVVKMGNQKLKTRVIKKDVNPEWNEYLTLSVSDANLPVKLTVYDHDRFSMDDKMGDAEFDIKPFLDALKMNLDSLPCGTVITRETPCRTNCLSEESKVTWQDNQVVQDLCLRLRNVECGEVELQLQWINIPGSKRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="31625" PGL_stop="32273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31625" e_stop="32273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="31625" e_stop="32273" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31625" stop="32273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGAAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCATCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTGAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  K  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  I  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  E  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  S  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  E  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  *  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31626" stop="32273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISSAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32284" PGL_stop="33091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32284" e_stop="33091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="32284" e_stop="33091" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32284" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCAAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCTAGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAAATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  Q  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  S  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  K  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  L  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  K  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  *  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  N  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32286" stop="32924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="34450" PGL_stop="38463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34450" e_stop="34566"/>
            <exon e_start="34864" e_stop="34985"/>
            <exon e_start="35164" e_stop="35301"/>
            <exon e_start="35468" e_stop="35605"/>
            <exon e_start="36248" e_stop="36391"/>
            <exon e_start="36559" e_stop="36669"/>
            <exon e_start="36759" e_stop="36900"/>
            <exon e_start="37101" e_stop="37381"/>
            <exon e_start="37515" e_stop="37676"/>
            <exon e_start="37760" e_stop="37813"/>
            <exon e_start="37992" e_stop="38066"/>
            <exon e_start="38151" e_stop="38463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.045" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34450" e_stop="34566" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34567" i_stop="34863" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34864" e_stop="34985" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="34986" i_stop="35163" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35301" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35302" i_stop="35467" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35468" e_stop="35605" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35606" i_stop="36247" i_length="642"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36248" e_stop="36391" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36392" i_stop="36558" i_length="167"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36559" e_stop="36669" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36670" i_stop="36758" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36759" e_stop="36900" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36901" i_stop="37100" i_length="200"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37101" e_stop="37381" e_length="281"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.045">
            <gDNA_intron_boundary i_start="37382" i_stop="37514" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="37515" e_stop="37676" e_length="162"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37677" i_stop="37759" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37760" e_stop="37813" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="37814" i_stop="37991" i_length="178"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37992" e_stop="38066" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.887" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38067" i_stop="38150" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="38151" e_stop="38463" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34450" stop="34566"/>
              <exon start="34864" stop="34985"/>
              <exon start="35164" stop="35301"/>
              <exon start="35468" stop="35605"/>
              <exon start="36248" stop="36391"/>
              <exon start="36559" stop="36669"/>
              <exon start="36759" stop="36900"/>
              <exon start="37101" stop="37381"/>
              <exon start="37515" stop="37676"/>
              <exon start="37760" stop="37813"/>
              <exon start="37992" stop="38066"/>
              <exon start="38151" stop="38463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATGCAGCAGAGAGGTAGAATTAGTAATTGTAAATCAAGGTCCTTTTCTAGATCTCGTCTTGCTGTTGAAGGTTCTTAACCTCTTCAGCTTCTATCATGGCTGCCATTGCTCCAG : AGGTAGGAGAAGAGCGTGAGATTCAAAAGAGTTATTGGATGGAGCAAACTAGTGAACTCAATTTGGAGGCAATGATGCGTGATTCTGCAGCATCTGATCTTGACAAAGAGGATAGGCCTGAG : GTGCTTTCACTGCTCCCTTCATATGAAGGTAAATCCGTGTTGGAATTGGGTGCTGGTATTGGCCGTTTCACTGGGGACTTAGCCGAGAAGGCTGGGGAGCTTGTAGCAGTGGACTTTATTGAAGAAGTGACTAAGAAG : AATGAAAGTATCAACGGGCACCACAAGAATGTCAAGTTTGTGTGTGCTGATGTGACTTCACCAGATTTGACGGTTTTACCTGAATCAGTGGACTTGATATTTTCTAACTGGCTACTGATGTATCTTTCCAACGAAGAG : GTTCAGGACCTTGCGGAGAGAATGATCAAATGGTTGAAAGTTGGTGGCTATATATTTTTTAGAGAGACATGCTTCCATCAATCAGGAGACCACAAGGGAAAGAACAACCCAACCCACTATCGAGAGCCTCGATTTTATACAAAG : GTTTTCCAAGAATGTACTTTAAAGGATGATGCTGGAAAATCATATGAACTTTCTCTTATTGGTTATAAGTGCATTGAAACTTATGTAAAAAACAAAAAGAATCAAAATGAG : ATTTGCTGGATATGGCAGAAGGTTCATTCCGAGGATGACAGGGGATTCCAGCATTTCTTGGACACTGTTCAGTACAAGTCTAATGGTATACTGAGATATGAACGTGTGTTCGGGGCAGGCTTTGTCAGCACAGGAGGAATTG : ACACCACCAAAGAATTCGTTGCCATGATGGATCTTCAGCCTGGCGAAAAGGTCCTTGACGTTGGCTGTGGCATTGGAGGAGGTGACTTTTACATGGCTGAGAAGTATGATGTTCATGTTGTAGGCATTGATCTTTCAGTTAACATGATCACATTGGCTTTTGAACGTGCTATTGGGCGCAAATGCGCGGTTGAATTTGAGGTTGCTGATTGCACGGTGAAAACATATCCTGAAGAATCATTCGATGTGATATACAGCCGGGACACTATCCTGCACATCCAG : GACAAGCCTGCATTATTCAGATCTTTCTATAAGTGGCTGAAGCCTGGAGGCAGAGTCCTCATAAGCGATTACTGCAAAAAGGCAGGACCAGCTTCCGAAGACTTTGCAGCGTATATCAAACAAAGAGGCTACGATTTACATGATGTTGAAGCATATGGACAG : ATGCTTAGAGATGCTGGTTTCAACGAAGTTATTGCTGATGATCGAACTGAGCAG : TTCATGCAAGTTCTCCAGAAAGAGTTGGATACTGTGGAGAATGAAAGAGAGTTATTTATCCAAGAATTTTCTGAA : CAAGACTACAATGATATAGTTGGAGGTTGGAAGGCCAAGCTAGTTAGAAGTTCATCTGGTGAGCAGAGATGGGGTTTGTTCTTTGCCAAGAAAAATTGATGTGTGTTATTGTGTACTGTTGTTTCATTGAAGATAATAAAAATGATTTAAGTTTGATGTTGTAATGATTCGAGGCTCTACCCTATGTAGACCCCATTTATAGGATTACACTGGCTATGTTGTTTATTTTAATGATTCCTACTCTGTCGGTTTAATGTAATATGTGAGTTGGTTAAGATCATGTTATTAATAAAAGTTTGTCATAAAGATTTAA</gDNA_template>
            <first_frame> L  M  Q  Q  R  G  R  I  S  N  C  K  S  R  S  F  S  R  S  R  L  A  V  E  G  S  *  P  L  Q  L  L  S  W  L  P  L  L  Q  :  R  *  E  K  S  V  R  F  K  R  V  I  G  W  S  K  L  V  N  S  I  W  R  Q  *  C  V  I  L  Q  H  L  I  L  T  K  R  I  G  L  R :   C  F  H  C  S  L  H  M  K  V  N  P  C  W  N  W  V  L  V  L  A  V  S  L  G  T  *  P  R  R  L  G  S  L  *  Q  W  T  L  L  K  K  *  L  R  R :   M  K  V  S  T  G  T  T  R  M  S  S  L  C  V  L  M  *  L  H  Q  I  *  R  F  Y  L  N  Q  W  T  *  Y  F  L  T  G  Y  *  C  I  F  P  T  K  R :   F  R  T  L  R  R  E  *  S  N  G  *  K  L  V  A  I  Y  F  L  E  R  H  A  S  I  N  Q  E  T  T  R  E  R  T  T  Q  P  T  I  E  S  L  D  F  I  Q  R :   F  S  K  N  V  L  *  R  M  M  L  E  N  H  M  N  F  L  L  L  V  I  S  A  L  K  L  M  *  K  T  K  R  I  K  M  R :   F  A  G  Y  G  R  R  F  I  P  R  M  T  G  D  S  S  I  S  W  T  L  F  S  T  S  L  M  V  Y  *  D  M  N  V  C  S  G  Q  A  L  S  A  Q  E  E  L  :  T  P  P  K  N  S  L  P  *  W  I  F  S  L  A  K  R  S  L  T  L  A  V  A  L  E  E  V  T  F  T  W  L  R  S  M  M  F  M  L  *  A  L  I  F  Q  L  T  *  S  H  W  L  L  N  V  L  L  G  A  N  A  R  L  N  L  R  L  L  I  A  R  *  K  H  I  L  K  N  H  S  M  *  Y  T  A  G  T  L  S  C  T  S  R :   T  S  L  H  Y  S  D  L  S  I  S  G  *  S  L  E  A  E  S  S  *  A  I  T  A  K  R  Q  D  Q  L  P  K  T  L  Q  R  I  S  N  K  E  A  T  I  Y  M  M  L  K  H  M  D  R :   C  L  E  M  L  V  S  T  K  L  L  L  M  I  E  L  S  S :   S  C  K  F  S  R  K  S  W  I  L  W  R  M  K  E  S  Y  L  S  K  N  F  L  N :   K  T  T  M  I  *  L  E  V  G  R  P  S  *  L  E  V  H  L  V  S  R  D  G  V  C  S  L  P  R  K  I  D  V  C  Y  C  V  L  L  F  H  *  R  *  *  K  *  F  K  F  D  V  V  M  I  R  G  S  T  L  C  R  P  H  L  *  D  Y  T  G  Y  V  V  Y  F  N  D  S  Y  S  V  G  L  M  *  Y  V  S  W  L  R  S  C  Y  *  *  K  F  V  I  K  I  * </first_frame>
            <second_frame>  *  C  S  R  E  V  E  L  V  I  V  N  Q  G  P  F  L  D  L  V  L  L  L  K  V  L  N  L  F  S  F  Y  H  G  C  H  C  S  R :   G  R  R  R  A  *  D  S  K  E  L  L  D  G  A  N  *  *  T  Q  F  G  G  N  D  A  *  F  C  S  I  *  S  *  Q  R  G  *  A  *   : G  A  F  T  A  P  F  I  *  R  *  I  R  V  G  I  G  C  W  Y  W  P  F  H  W  G  L  S  R  E  G  W  G  A  C  S  S  G  L  Y  *  R  S  D  *  E   : E  *  K  Y  Q  R  A  P  Q  E  C  Q  V  C  V  C  *  C  D  F  T  R  F  D  G  F  T  *  I  S  G  L  D  I  F  *  L  A  T  D  V  S  F  Q  R  R   : G  S  G  P  C  G  E  N  D  Q  M  V  E  S  W  W  L  Y  I  F  *  R  D  M  L  P  S  I  R  R  P  Q  G  K  E  Q  P  N  P  L  S  R  A  S  I  L  Y  K   : G  F  P  R  M  Y  F  K  G  *  C  W  K  I  I  *  T  F  S  Y  W  L  *  V  H  *  N  L  C  K  K  Q  K  E  S  K  *   : D  L  L  D  M  A  E  G  S  F  R  G  *  Q  G  I  P  A  F  L  G  H  C  S  V  Q  V  *  W  Y  T  E  I  *  T  C  V  R  G  R  L  C  Q  H  R  R  N  * :   H  H  Q  R  I  R  C  H  D  G  S  S  A  W  R  K  G  P  *  R  W  L  W  H  W  R  R  *  L  L  H  G  *  E  V  *  C  S  C  C  R  H  *  S  F  S  *  H  D  H  I  G  F  *  T  C  Y  W  A  Q  M  R  G  *  I  *  G  C  *  L  H  G  E  N  I  S  *  R  I  I  R  C  D  I  Q  P  G  H  Y  P  A  H  P   : G  Q  A  C  I  I  Q  I  F  L  *  V  A  E  A  W  R  Q  S  P  H  K  R  L  L  Q  K  G  R  T  S  F  R  R  L  C  S  V  Y  Q  T  K  R  L  R  F  T  *  C  *  S  I  W  T   : D  A  *  R  C  W  F  Q  R  S  Y  C  *  *  S  N  *  A   : V  H  A  S  S  P  E  R  V  G  Y  C  G  E  *  K  R  V  I  Y  P  R  I  F  *   : T  R  L  Q  *  Y  S  W  R  L  E  G  Q  A  S  *  K  F  I  W  *  A  E  M  G  F  V  L  C  Q  E  K  L  M  C  V  I  V  Y  C  C  F  I  E  D  N  K  N  D  L  S  L  M  L  *  *  F  E  A  L  P  Y  V  D  P  I  Y  R  I  T  L  A  M  L  F  I  L  M  I  P  T  L  S  V  *  C  N  M  *  V  G  *  D  H  V  I  N  K  S  L  S  *  R  F   </second_frame>
            <third_frame>   D  A  A  E  R  *  N  *  *  L  *  I  K  V  L  F  *  I  S  S  C  C  *  R  F  L  T  S  S  A  S  I  M  A  A  I  A  P   : E  V  G  E  E  R  E  I  Q  K  S  Y  W  M  E  Q  T  S  E  L  N  L  E  A  M  M  R  D  S  A  A  S  D  L  D  K  E  D  R  P  E  :  V  L  S  L  L  P  S  Y  E  G  K  S  V  L  E  L  G  A  G  I  G  R  F  T  G  D  L  A  E  K  A  G  E  L  V  A  V  D  F  I  E  E  V  T  K  K  :  N  E  S  I  N  G  H  H  K  N  V  K  F  V  C  A  D  V  T  S  P  D  L  T  V  L  P  E  S  V  D  L  I  F  S  N  W  L  L  M  Y  L  S  N  E  E  :  V  Q  D  L  A  E  R  M  I  K  W  L  K  V  G  G  Y  I  F  F  R  E  T  C  F  H  Q  S  G  D  H  K  G  K  N  N  P  T  H  Y  R  E  P  R  F  Y  T  K  :  V  F  Q  E  C  T  L  K  D  D  A  G  K  S  Y  E  L  S  L  I  G  Y  K  C  I  E  T  Y  V  K  N  K  K  N  Q  N  E  :  I  C  W  I  W  Q  K  V  H  S  E  D  D  R  G  F  Q  H  F  L  D  T  V  Q  Y  K  S  N  G  I  L  R  Y  E  R  V  F  G  A  G  F  V  S  T  G  G  I   : D  T  T  K  E  F  V  A  M  M  D  L  Q  P  G  E  K  V  L  D  V  G  C  G  I  G  G  G  D  F  Y  M  A  E  K  Y  D  V  H  V  V  G  I  D  L  S  V  N  M  I  T  L  A  F  E  R  A  I  G  R  K  C  A  V  E  F  E  V  A  D  C  T  V  K  T  Y  P  E  E  S  F  D  V  I  Y  S  R  D  T  I  L  H  I  Q  :  D  K  P  A  L  F  R  S  F  Y  K  W  L  K  P  G  G  R  V  L  I  S  D  Y  C  K  K  A  G  P  A  S  E  D  F  A  A  Y  I  K  Q  R  G  Y  D  L  H  D  V  E  A  Y  G  Q  :  M  L  R  D  A  G  F  N  E  V  I  A  D  D  R  T  E  Q  :  F  M  Q  V  L  Q  K  E  L  D  T  V  E  N  E  R  E  L  F  I  Q  E  F  S  E  :  Q  D  Y  N  D  I  V  G  G  W  K  A  K  L  V  R  S  S  S  G  E  Q  R  W  G  L  F  F  A  K  K  N  *  C  V  L  L  C  T  V  V  S  L  K  I  I  K  M  I  *  V  *  C  C  N  D  S  R  L  Y  P  M  *  T  P  F  I  G  L  H  W  L  C  C  L  F  *  *  F  L  L  C  R  F  N  V  I  C  E  L  V  K  I  M  L  L  I  K  V  C  H  K  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34521" stop="34566"/>
                    <exon start="34864" stop="34985"/>
                    <exon start="35164" stop="35301"/>
                    <exon start="35468" stop="35605"/>
                    <exon start="36248" stop="36391"/>
                    <exon start="36559" stop="36669"/>
                    <exon start="36759" stop="36900"/>
                    <exon start="37101" stop="37381"/>
                    <exon start="37515" stop="37676"/>
                    <exon start="37760" stop="37813"/>
                    <exon start="37992" stop="38066"/>
                    <exon start="38151" stop="38249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLTSSASIMAAIAPEVGEEREIQKSYWMEQTSELNLEAMMRDSAASDLDKEDRPEVLSLLPSYEGKSVLELGAGIGRFTGDLAEKAGELVAVDFIEEVTKKNESINGHHKNVKFVCADVTSPDLTVLPESVDLIFSNWLLMYLSNEEVQDLAERMIKWLKVGGYIFFRETCFHQSGDHKGKNNPTHYREPRFYTKVFQECTLKDDAGKSYELSLIGYKCIETYVKNKKNQNEICWIWQKVHSEDDRGFQHFLDTVQYKSNGILRYERVFGAGFVSTGGIDTTKEFVAMMDLQPGEKVLDVGCGIGGGDFYMAEKYDVHVVGIDLSVNMITLAFERAIGRKCAVEFEVADCTVKTYPEESFDVIYSRDTILHIQDKPALFRSFYKWLKPGGRVLISDYCKKAGPASEDFAAYIKQRGYDLHDVEAYGQMLRDAGFNEVIADDRTEQFMQVLQKELDTVENERELFIQEFSEQDYNDIVGGWKAKLVRSSSGEQRWGLFFAKKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41209" PGL_stop="41880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41209" e_stop="41880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41209" e_stop="41880" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41209" stop="41880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAATCGGAAAAAATGGCTACCGAAGGTCCCAAGCCCTGCGTTTACCTTCAAGACATGGAAGAAGTGAAAAAAGTATTCGCACGCTTCGACGCGAATGGCGACGGCATGATCTCCGGCGACGAACTTTCCGGCGTACTGAAAGCCCTAGGATCCGACACTTCGCCGGAAGAAGTTGCACGTATGATGGCCGAAATTGATACCGATAAGGACGGTTGCATTAACCTAGATGAATTTGCAGATTTTTGCAAAAACGACGAATCCGTCGACGGCGGCGCTAAGGAACTGAAGGAAGCGTTTGATCTTTACGATCAGGATCATAACGGAAGGATTTCTGCTACGGAACTTCATCAGATCCTGAACCGCTTGGGCCAGAATTGTACCCTTCAGGATTGTACCAGAATGATCACGTCCGTTGATGCAAACGGTGACGGTTACGTTTGCTTTGAAGAGTTTAAGAAGATGATGGGTAATAAATAAATCATTTTATCGTAAGTTTTACAGTTATTTGAGTGGCTGATAACGGTGGGGTACACCGGATATTTGTGCGTCCTCCTGTAGTGTATAACTTTGTGGTCTAATAAATAGCAAGACCTTAGCTTTCCATCGCCTTTTATTTTGTACGTAGATCTCGTTCATTTTAATTTATGTGATAATTTTTATTTGTGTTAAT</gDNA_template>
            <first_frame> H  N  R  K  K  W  L  P  K  V  P  S  P  A  F  T  F  K  T  W  K  K  *  K  K  Y  S  H  A  S  T  R  M  A  T  A  *  S  P  A  T  N  F  P  A  Y  *  K  P  *  D  P  T  L  R  R  K  K  L  H  V  *  W  P  K  L  I  P  I  R  T  V  A  L  T  *  M  N  L  Q  I  F  A  K  T  T  N  P  S  T  A  A  L  R  N  *  R  K  R  L  I  F  T  I  R  I  I  T  E  G  F  L  L  R  N  F  I  R  S  *  T  A  W  A  R  I  V  P  F  R  I  V  P  E  *  S  R  P  L  M  Q  T  V  T  V  T  F  A  L  K  S  L  R  R  *  W  V  I  N  K  S  F  Y  R  K  F  Y  S  Y  L  S  G  *  *  R  W  G  T  P  D  I  C  A  S  S  C  S  V  *  L  C  G  L  I  N  S  K  T  L  A  F  H  R  L  L  F  C  T  *  I  S  F  I  L  I  Y  V  I  I  F  I  C  V  N </first_frame>
            <second_frame>  T  I  G  K  N  G  Y  R  R  S  Q  A  L  R  L  P  S  R  H  G  R  S  E  K  S  I  R  T  L  R  R  E  W  R  R  H  D  L  R  R  R  T  F  R  R  T  E  S  P  R  I  R  H  F  A  G  R  S  C  T  Y  D  G  R  N  *  Y  R  *  G  R  L  H  *  P  R  *  I  C  R  F  L  Q  K  R  R  I  R  R  R  R  R  *  G  T  E  G  S  V  *  S  L  R  S  G  S  *  R  K  D  F  C  Y  G  T  S  S  D  P  E  P  L  G  P  E  L  Y  P  S  G  L  Y  Q  N  D  H  V  R  *  C  K  R  *  R  L  R  L  L  *  R  V  *  E  D  D  G  *  *  I  N  H  F  I  V  S  F  T  V  I  *  V  A  D  N  G  G  V  H  R  I  F  V  R  P  P  V  V  Y  N  F  V  V  *  *  I  A  R  P  *  L  S  I  A  F  Y  F  V  R  R  S  R  S  F  *  F  M  *  *  F  L  F  V  L   </second_frame>
            <third_frame>   Q  S  E  K  M  A  T  E  G  P  K  P  C  V  Y  L  Q  D  M  E  E  V  K  K  V  F  A  R  F  D  A  N  G  D  G  M  I  S  G  D  E  L  S  G  V  L  K  A  L  G  S  D  T  S  P  E  E  V  A  R  M  M  A  E  I  D  T  D  K  D  G  C  I  N  L  D  E  F  A  D  F  C  K  N  D  E  S  V  D  G  G  A  K  E  L  K  E  A  F  D  L  Y  D  Q  D  H  N  G  R  I  S  A  T  E  L  H  Q  I  L  N  R  L  G  Q  N  C  T  L  Q  D  C  T  R  M  I  T  S  V  D  A  N  G  D  G  Y  V  C  F  E  E  F  K  K  M  M  G  N  K  *  I  I  L  S  *  V  L  Q  L  F  E  W  L  I  T  V  G  Y  T  G  Y  L  C  V  L  L  *  C  I  T  L  W  S  N  K  *  Q  D  L  S  F  P  S  P  F  I  L  Y  V  D  L  V  H  F  N  L  C  D  N  F  Y  L  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41211" stop="41687"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSEKMATEGPKPCVYLQDMEEVKKVFARFDANGDGMISGDELSGVLKALGSDTSPEEVARMMAEIDTDKDGCINLDEFADFCKNDESVDGGAKELKEAFDLYDQDHNGRISATELHQILNRLGQNCTLQDCTRMITSVDANGDGYVCFEEFKKMMGNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48750" PGL_stop="47307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48750" e_stop="48704"/>
            <exon e_start="48628" e_stop="48559"/>
            <exon e_start="48151" e_stop="48084"/>
            <exon e_start="47868" e_stop="47807"/>
            <exon e_start="47690" e_stop="47609"/>
            <exon e_start="47500" e_stop="47307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48750" e_stop="48704" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48703" i_stop="48629" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48628" e_stop="48559" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="48558" i_stop="48152" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48151" e_stop="48084" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48083" i_stop="47869" i_length="215"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47868" e_stop="47807" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47806" i_stop="47691" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47690" e_stop="47609" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.906">
            <gDNA_intron_boundary i_start="47608" i_stop="47501" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47500" e_stop="47307" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48750" stop="48704"/>
              <exon start="48628" stop="48559"/>
              <exon start="48151" stop="48084"/>
              <exon start="47868" stop="47807"/>
              <exon start="47690" stop="47609"/>
              <exon start="47500" stop="47307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACAGTTATCGACTCCCATTTCTTGGGCCTAACCGCCATTGTTACA : GTGGTTTACCAATTAATCTTTTTTATAATCACAGCACTCCTCAAATTTGATAAAGTCACAGATTTCGCAG : GAGGTACAAATTTCATTGTGCTTGCAGTATTAACTTTGATACTAAAAGGTTCATGGAATTTTCGACAG : GTGGTTTTGTCTGTGTTTGTCGTGATATGGGGCCTTCGACTGGGGCTATTTCTATTAATGAG : GATATTACAATGGGGCGAGGATAGACGTTTTGATGATAAGCGTGATAATCTGGGGAAACTGGCAATATTTTGGCTATTTCAG : GCAATCTGGGTGTGGACTGTGAGTTTACCAGTGACAGTTGTTAATGCAAGTGACCACCAACCATCTGTTCAGACGGTAGACATCATTGGTTGGATTATGTGGTCTATCGGAATATCAGTTGAGATCGCTTCTGACCAACAAAAGTTAACATTCAAAAACTCCCCAGAGAACAGAGGAAAGTGGTGCAATGTTGG</gDNA_template>
            <first_frame> G  Q  L  S  T  P  I  S  W  A  *  P  P  L  L  Q :   W  F  T  N  *  S  F  L  *  S  Q  H  S  S  N  L  I  K  S  Q  I  S  Q  :  E  V  Q  I  S  L  C  L  Q  Y  *  L  *  Y  *  K  V  H  G  I  F  D  R :   W  F  C  L  C  L  S  *  Y  G  A  F  D  W  G  Y  F  Y  *  *   : G  Y  Y  N  G  A  R  I  D  V  L  M  I  S  V  I  I  W  G  N  W  Q  Y  F  G  Y  F  R :   Q  S  G  C  G  L  *  V  Y  Q  *  Q  L  L  M  Q  V  T  T  N  H  L  F  R  R  *  T  S  L  V  G  L  C  G  L  S  E  Y  Q  L  R  S  L  L  T  N  K  S  *  H  S  K  T  P  Q  R  T  E  E  S  G  A  M  L  </first_frame>
            <second_frame>  D  S  Y  R  L  P  F  L  G  P  N  R  H  C  Y   : S  G  L  P  I  N  L  F  Y  N  H  S  T  P  Q  I  *  *  S  H  R  F  R  R :   R  Y  K  F  H  C  A  C  S  I  N  F  D  T  K  R  F  M  E  F  S  T   : G  G  F  V  C  V  C  R  D  M  G  P  S  T  G  A  I  S  I  N  E  :  D  I  T  M  G  R  G  *  T  F  *  *  *  A  *  *  S  G  E  T  G  N  I  L  A  I  S   : G  N  L  G  V  D  C  E  F  T  S  D  S  C  *  C  K  *  P  P  T  I  C  S  D  G  R  H  H  W  L  D  Y  V  V  Y  R  N  I  S  *  D  R  F  *  P  T  K  V  N  I  Q  K  L  P  R  E  Q  R  K  V  V  Q  C  W </second_frame>
            <third_frame>   T  V  I  D  S  H  F  L  G  L  T  A  I  V  T  :  V  V  Y  Q  L  I  F  F  I  I  T  A  L  L  K  F  D  K  V  T  D  F  A   : G  G  T  N  F  I  V  L  A  V  L  T  L  I  L  K  G  S  W  N  F  R  Q  :  V  V  L  S  V  F  V  V  I  W  G  L  R  L  G  L  F  L  L  M  R :   I  L  Q  W  G  E  D  R  R  F  D  D  K  R  D  N  L  G  K  L  A  I  F  W  L  F  Q  :  A  I  W  V  W  T  V  S  L  P  V  T  V  V  N  A  S  D  H  Q  P  S  V  Q  T  V  D  I  I  G  W  I  M  W  S  I  G  I  S  V  E  I  A  S  D  Q  Q  K  L  T  F  K  N  S  P  E  N  R  G  K  W  C  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48748" stop="48704"/>
                    <exon start="48628" stop="48559"/>
                    <exon start="48151" stop="48084"/>
                    <exon start="47868" stop="47807"/>
                    <exon start="47690" stop="47609"/>
                    <exon start="47500" stop="47309"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVIDSHFLGLTAIVTVVYQLIFFIITALLKFDKVTDFAGGTNFIVLAVLTLILKGSWNFRQVVLSVFVVIWGLRLGLFLLMRILQWGEDRRFDDKRDNLGKLAIFWLFQAIWVWTVSLPVTVVNASDHQPSVQTVDIIGWIMWSIGISVEIASDQQKLTFKNSPENRGKWCNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51913" PGL_stop="49129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51913" e_stop="51813"/>
            <exon e_start="51647" e_stop="51569"/>
            <exon e_start="51472" e_stop="51374"/>
            <exon e_start="51280" e_stop="51212"/>
            <exon e_start="50281" e_stop="50232"/>
            <exon e_start="50049" e_stop="49873"/>
            <exon e_start="49613" e_stop="49129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.488" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51913" e_stop="51813" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51812" i_stop="51648" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51647" e_stop="51569" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51568" i_stop="51473" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51472" e_stop="51374" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.488" acc_prob="0.968">
            <gDNA_intron_boundary i_start="51373" i_stop="51281" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="51212" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="51211" i_stop="50282" i_length="930"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50281" e_stop="50232" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.901">
            <gDNA_intron_boundary i_start="50231" i_stop="50050" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50049" e_stop="49873" e_length="177"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49872" i_stop="49614" i_length="259"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49613" e_stop="49129" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51913" stop="51813"/>
              <exon start="51647" stop="51569"/>
              <exon start="51472" stop="51374"/>
              <exon start="51280" stop="51212"/>
              <exon start="50281" stop="50232"/>
              <exon start="50049" stop="49873"/>
              <exon start="49613" stop="49129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCGGATCATGAAAAGGCTCAGACATCCAAATGTTGTTCTGTTCATGGGAGCTGTTACTCGTTCTCCACATCTTTCAATTGTTACTGAGTTTCTTCATAG : AGGAAGTTTGTACAGATTAATCCATCGACCCAACAATCAGTTAGATGAGCGCAGAAGGTTGAGGATGGCTCTTGATGCT : GCTCGAGGAATGAACTATTTACACAACTGCACTCCAATGATAGTTCATCGAGATTTGAAGTCACCAAATCTCCTAGTAGATAAGAACTGGGTTGTGAAG : GTATGTGATTTTGGACTGTCAAGAATGAAGCACAGCACATTTCTTTCTTCTAGGTCTACTGCTGGGACG : GCAGAGTGGATGGCCCCAGAAGTGCTGAGAAATGAACCTTCAAATGAAAA : ATGTGATGTATATAGCTTCGGTGTCATACTATGGGAGCTCTGTACTTTACAGCAACCATGGGGAGGAATGAATCCAATGCAAGTCGTTGGCGCTGTGGGGTTTCAGCACCGTCGTCTTGACATACCAGATGACACGGATCCAGCTATTGCAGACATTATCAGGAAATGCTGGCAAAC : AGATCCAAAGTTACGGCCTTCATTTACTGAGATAATGGCTGCTCTGAAACCACTACAAAAGCCTATTACTAGTTCACATGCACCAAAACCACCAGTTGCCAGAGGCCAACCATCGTGAATCTTAGAAGATGCATCCGCGGAGCAGGGTTAATACTGAAGAACGTAAATAGACGTATTTTTCGTTGAATTTAAACAGGTCCGAATTTGAGCTCAAGAAGCTGAAAGAAGACATCAAAGAACCTGACAGTCAGATACTTCATTTTAAGCCAAATTGTGATTCTTTTGTTAGCAGTGTTTCCCTAGTCCTCAAAAATTGTGTATCTGCCTTCCCTTGTGTATTCATATTGATTCCCTCTTTTGTAATTAAAAAAAAAGAAGAAAGAATTGCTTTAAAGGAGCTCAAGCTCCTCTTTTATCTATGTTTTAGGTCAACATTTATATTTTGTACCTATTTTATTGAAACATGTGCAAATATAGCTCTTGAG</gDNA_template>
            <first_frame> V  R  I  M  K  R  L  R  H  P  N  V  V  L  F  M  G  A  V  T  R  S  P  H  L  S  I  V  T  E  F  L  H  R :   G  S  L  Y  R  L  I  H  R  P  N  N  Q  L  D  E  R  R  R  L  R  M  A  L  D  A  :  A  R  G  M  N  Y  L  H  N  C  T  P  M  I  V  H  R  D  L  K  S  P  N  L  L  V  D  K  N  W  V  V  K  :  V  C  D  F  G  L  S  R  M  K  H  S  T  F  L  S  S  R  S  T  A  G  T  :  A  E  W  M  A  P  E  V  L  R  N  E  P  S  N  E  K :   C  D  V  Y  S  F  G  V  I  L  W  E  L  C  T  L  Q  Q  P  W  G  G  M  N  P  M  Q  V  V  G  A  V  G  F  Q  H  R  R  L  D  I  P  D  D  T  D  P  A  I  A  D  I  I  R  K  C  W  Q  T :   D  P  K  L  R  P  S  F  T  E  I  M  A  A  L  K  P  L  Q  K  P  I  T  S  S  H  A  P  K  P  P  V  A  R  G  Q  P  S  *  I  L  E  D  A  S  A  E  Q  G  *  Y  *  R  T  *  I  D  V  F  F  V  E  F  K  Q  V  R  I  *  A  Q  E  A  E  R  R  H  Q  R  T  *  Q  S  D  T  S  F  *  A  K  L  *  F  F  C  *  Q  C  F  P  S  P  Q  K  L  C  I  C  L  P  L  C  I  H  I  D  S  L  F  C  N  *  K  K  R  R  K  N  C  F  K  G  A  Q  A  P  L  L  S  M  F  *  V  N  I  Y  I  L  Y  L  F  Y  *  N  M  C  K  Y  S  S  *  </first_frame>
            <second_frame>  C  G  S  *  K  G  S  D  I  Q  M  L  F  C  S  W  E  L  L  L  V  L  H  I  F  Q  L  L  L  S  F  F  I   : E  E  V  C  T  D  *  S  I  D  P  T  I  S  *  M  S  A  E  G  *  G  W  L  L  M  L :   L  E  E  *  T  I  Y  T  T  A  L  Q  *  *  F  I  E  I  *  S  H  Q  I  S  *  *  I  R  T  G  L  *  R :   Y  V  I  L  D  C  Q  E  *  S  T  A  H  F  F  L  L  G  L  L  L  G  R :   Q  S  G  W  P  Q  K  C  *  E  M  N  L  Q  M  K   : N  V  M  Y  I  A  S  V  S  Y  Y  G  S  S  V  L  Y  S  N  H  G  E  E  *  I  Q  C  K  S  L  A  L  W  G  F  S  T  V  V  L  T  Y  Q  M  T  R  I  Q  L  L  Q  T  L  S  G  N  A  G  K   : Q  I  Q  S  Y  G  L  H  L  L  R  *  W  L  L  *  N  H  Y  K  S  L  L  L  V  H  M  H  Q  N  H  Q  L  P  E  A  N  H  R  E  S  *  K  M  H  P  R  S  R  V  N  T  E  E  R  K  *  T  Y  F  S  L  N  L  N  R  S  E  F  E  L  K  K  L  K  E  D  I  K  E  P  D  S  Q  I  L  H  F  K  P  N  C  D  S  F  V  S  S  V  S  L  V  L  K  N  C  V  S  A  F  P  C  V  F  I  L  I  P  S  F  V  I  K  K  K  E  E  R  I  A  L  K  E  L  K  L  L  F  Y  L  C  F  R  S  T  F  I  F  C  T  Y  F  I  E  T  C  A  N  I  A  L  E </second_frame>
            <third_frame>   A  D  H  E  K  A  Q  T  S  K  C  C  S  V  H  G  S  C  Y  S  F  S  T  S  F  N  C  Y  *  V  S  S  *  :  R  K  F  V  Q  I  N  P  S  T  Q  Q  S  V  R  *  A  Q  K  V  E  D  G  S  *  C   : C  S  R  N  E  L  F  T  Q  L  H  S  N  D  S  S  S  R  F  E  V  T  K  S  P  S  R  *  E  L  G  C  E   : G  M  *  F  W  T  V  K  N  E  A  Q  H  I  S  F  F  *  V  Y  C  W  D   : G  R  V  D  G  P  R  S  A  E  K  *  T  F  K  *  K  :  M  *  C  I  *  L  R  C  H  T  M  G  A  L  Y  F  T  A  T  M  G  R  N  E  S  N  A  S  R  W  R  C  G  V  S  A  P  S  S  *  H  T  R  *  H  G  S  S  Y  C  R  H  Y  Q  E  M  L  A  N  :  R  S  K  V  T  A  F  I  Y  *  D  N  G  C  S  E  T  T  T  K  A  Y  Y  *  F  T  C  T  K  T  T  S  C  Q  R  P  T  I  V  N  L  R  R  C  I  R  G  A  G  L  I  L  K  N  V  N  R  R  I  F  R  *  I  *  T  G  P  N  L  S  S  R  S  *  K  K  T  S  K  N  L  T  V  R  Y  F  I  L  S  Q  I  V  I  L  L  L  A  V  F  P  *  S  S  K  I  V  Y  L  P  S  L  V  Y  S  Y  *  F  P  L  L  *  L  K  K  K  K  K  E  L  L  *  R  S  S  S  S  S  F  I  Y  V  L  G  Q  H  L  Y  F  V  P  I  L  L  K  H  V  Q  I  *  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51913" stop="51813"/>
                    <exon start="51647" stop="51569"/>
                    <exon start="51472" stop="51374"/>
                    <exon start="51280" stop="51212"/>
                    <exon start="50281" stop="50232"/>
                    <exon start="50049" stop="49873"/>
                    <exon start="49613" stop="49496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRIMKRLRHPNVVLFMGAVTRSPHLSIVTEFLHRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCTPMIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELCTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDTDPAIADIIRKCWQTDPKLRPSFTEIMAALKPLQKPITSSHAPKPPVARGQPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49443" stop="49129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYFSLNLNRSEFELKKLKEDIKEPDSQILHFKPNCDSFVSSVSLVLKNCVSAFPCVFILIPSFVIKKKEERIALKELKLLFYLCFRSTFIFCTYFIETCANIALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="58304" PGL_stop="53558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58304" e_stop="58239"/>
            <exon e_start="56890" e_stop="56453"/>
            <exon e_start="55799" e_stop="55699"/>
            <exon e_start="54820" e_stop="54556"/>
            <exon e_start="54480" e_stop="53829"/>
            <exon e_start="53720" e_stop="53558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.339" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="0.992"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58304" e_stop="58239" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.840">
            <gDNA_intron_boundary i_start="58238" i_stop="56891" i_length="1348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56890" e_stop="56453" e_length="438"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56452" i_stop="55800" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55799" e_stop="55699" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.339" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55698" i_stop="54821" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54820" e_stop="54556" e_length="265"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54555" i_stop="54481" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="54480" e_stop="53829" e_length="652"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="53828" i_stop="53721" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.939">
            <gDNA_exon_boundary e_start="53720" e_stop="53558" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58304" stop="58239"/>
              <exon start="56890" stop="56453"/>
              <exon start="55799" stop="55699"/>
              <exon start="54820" stop="54556"/>
              <exon start="54480" stop="53829"/>
              <exon start="53720" stop="53558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATCAGTTTAGGCTCTTCTGCCCCAGAGAATGCTCCTGCAGAAGTTGTAGCATATCGGTATTGG : AATTACAATGCTCTAAGCTATGATGACAAGATCCTGGATGGATTTTATGATTTGTATGGTGTCCTCATGGAGTCCAATTCCTCGAAAATGCCCTCCCTCATTGATCTGCAAAGAACAGAAGTATCAGATCATATTAGTTGGGAAGCCATCCTTATCAGTAAAGCTGCGGACTCCAAGTTGTTGAAACTTGAACAGAGAGCTCTAGAGATTGCTGTTGAGGAGAGGTCAAAACTCATGGATTTTTCAGCCAGCAGTTTGGTACATGAGCTTGCTGTGCTAGTTTCTGACCACATGGGGGGCCCAGTTGTGGATCCAGAGAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGGCTCGTCATCGTGCATTGTTATTCAAG : GTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGATGTTGCAATGAACTATGTAAAGATCGATGGAAG : GGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGTACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTTCATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAATCCAGAACTGCAG : GAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCCAGCTGCACACAAAATGAAAGTAAAGGATGCTTCACAATACATGATCGATGCTGCCAAAGAAAATCCACAGCTAGCTCAAAAACTGCACACTGTTTTACTTGAGAGTGGAGTTATTGCACCACCAAACTTGTTCGCTGAGATCTATCCAGAACAACTAGACGTATCTCATATAGAGGGAAAATCCAGGCTAGAGGAAAGAGACGAGTTCCAGAAAGTCAGGGGTCAATCTGATAAGAATCGAGCCCGCTTCTTACCCCCTCTGCCTTATCACAGTCCATACTCAAAGGGCAATGCACGTGGATCATTGGAACCTCAGCCAAATGTGAGAGAAGTTGATGAACAGCAAGTCTCTAGACAGTCTGAAGTAGCTCCACCAAAACATATGAAAAAAGTTCCTGTTGCTGCTGCTGCTGCCGCTGCCGCAGCTGCTGTTGCCTCTTCGATGGTAGTTGTTGCAGCCAAGACTAACCCTCACGGGGACCTTCCCGTAGCAGCTGCTGCCACAGCCACAGCTGCAGCAGTAGTAGCAACAACTGCAGCAGTCAGTAAGCAATATGAGGCACAAGGAG : ACTGTGAAAGAGCTGATGGAGATGCAGATACTGCTGTTTATGAGCAACAGGGATGTGGTCATCAAGAGCATGAGGCAGCAGGAGCAAATTCAGAGGGCGAAAGGATGTCAGATAAGTCAACTAGTAATGATAGTACTAAATCGGATGTGACACTTGATGATGT</gDNA_template>
            <first_frame> Q  I  S  L  G  S  S  A  P  E  N  A  P  A  E  V  V  A  Y  R  Y  W  :  N  Y  N  A  L  S  Y  D  D  K  I  L  D  G  F  Y  D  L  Y  G  V  L  M  E  S  N  S  S  K  M  P  S  L  I  D  L  Q  R  T  E  V  S  D  H  I  S  W  E  A  I  L  I  S  K  A  A  D  S  K  L  L  K  L  E  Q  R  A  L  E  I  A  V  E  E  R  S  K  L  M  D  F  S  A  S  S  L  V  H  E  L  A  V  L  V  S  D  H  M  G  G  P  V  V  D  P  E  S  M  L  L  A  W  R  S  I  S  Y  N  L  K  A  T  L  G  S  M  V  L  P  L  G  S  L  T  I  G  L  A  R  H  R  A  L  L  F  K  :  V  L  A  D  S  V  G  I  P  C  R  L  V  K  G  K  Q  Y  T  G  S  D  D  V  A  M  N  Y  V  K  I  D  G  R :   E  Y  I  V  D  L  M  A  A  P  G  T  L  I  P  S  D  T  S  G  V  H  G  D  Y  E  E  S  I  L  S  I  S  P  S  S  K  D  V  D  S  H  P  G  S  N  S  S  G  I  A  S  S  L  G  D  H  S  D  Y  G  T  A  D  K  R  S  R  F  A  E  S  T  S  A  G  N  E  S  P  S  S  G  N  P  E  L  Q  :  E  T  S  S  R  A  G  H  A  R  S  A  F  T  H  A  R  S  P  S  W  T  E  G  V  S  S  P  A  A  H  K  M  K  V  K  D  A  S  Q  Y  M  I  D  A  A  K  E  N  P  Q  L  A  Q  K  L  H  T  V  L  L  E  S  G  V  I  A  P  P  N  L  F  A  E  I  Y  P  E  Q  L  D  V  S  H  I  E  G  K  S  R  L  E  E  R  D  E  F  Q  K  V  R  G  Q  S  D  K  N  R  A  R  F  L  P  P  L  P  Y  H  S  P  Y  S  K  G  N  A  R  G  S  L  E  P  Q  P  N  V  R  E  V  D  E  Q  Q  V  S  R  Q  S  E  V  A  P  P  K  H  M  K  K  V  P  V  A  A  A  A  A  A  A  A  A  A  V  A  S  S  M  V  V  V  A  A  K  T  N  P  H  G  D  L  P  V  A  A  A  A  T  A  T  A  A  A  V  V  A  T  T  A  A  V  S  K  Q  Y  E  A  Q  G   : D  C  E  R  A  D  G  D  A  D  T  A  V  Y  E  Q  Q  G  C  G  H  Q  E  H  E  A  A  G  A  N  S  E  G  E  R  M  S  D  K  S  T  S  N  D  S  T  K  S  D  V  T  L  D  D   </first_frame>
            <second_frame>  K  S  V  *  A  L  L  P  Q  R  M  L  L  Q  K  L  *  H  I  G  I  G :   I  T  M  L  *  A  M  M  T  R  S  W  M  D  F  M  I  C  M  V  S  S  W  S  P  I  P  R  K  C  P  P  S  L  I  C  K  E  Q  K  Y  Q  I  I  L  V  G  K  P  S  L  S  V  K  L  R  T  P  S  C  *  N  L  N  R  E  L  *  R  L  L  L  R  R  G  Q  N  S  W  I  F  Q  P  A  V  W  Y  M  S  L  L  C  *  F  L  T  T  W  G  A  Q  L  W  I  Q  R  A  C  C  L  H  G  E  V  L  V  I  I  L  R  Q  L  *  G  V  W  F  C  L  L  V  L  *  P  L  D  W  L  V  I  V  H  C  Y  S  R :   F  *  L  I  V  W  G  F  L  A  D  *  *  K  E  S  S  I  Q  V  Q  M  M  L  Q  *  T  M  *  R  S  M  E   : G  S  I  L  S  I  *  W  Q  P  P  E  H  L  F  H  L  T  H  L  E  Y  M  E  T  M  K  S  L  F  S  P  S  V  H  P  P  K  M  L  I  L  I  Q  V  P  I  V  V  G  L  L  L  H  W  E  I  I  Q  T  M  E  R  Q  T  R  D  P  G  L  R  K  A  L  V  Q  E  M  N  L  P  L  L  V  I  Q  N  C  R :   K  L  L  L  E  L  G  M  Q  D  L  L  L  H  M  Q  D  L  L  R  G  Q  K  V  L  A  P  Q  L  H  T  K  *  K  *  R  M  L  H  N  T  *  S  M  L  P  K  K  I  H  S  *  L  K  N  C  T  L  F  Y  L  R  V  E  L  L  H  H  Q  T  C  S  L  R  S  I  Q  N  N  *  T  Y  L  I  *  R  E  N  P  G  *  R  K  E  T  S  S  R  K  S  G  V  N  L  I  R  I  E  P  A  S  Y  P  L  C  L  I  T  V  H  T  Q  R  A  M  H  V  D  H  W  N  L  S  Q  M  *  E  K  L  M  N  S  K  S  L  D  S  L  K  *  L  H  Q  N  I  *  K  K  F  L  L  L  L  L  L  P  L  P  Q  L  L  L  P  L  R  W  *  L  L  Q  P  R  L  T  L  T  G  T  F  P  *  Q  L  L  P  Q  P  Q  L  Q  Q  *  *  Q  Q  L  Q  Q  S  V  S  N  M  R  H  K  E  :  T  V  K  E  L  M  E  M  Q  I  L  L  F  M  S  N  R  D  V  V  I  K  S  M  R  Q  Q  E  Q  I  Q  R  A  K  G  C  Q  I  S  Q  L  V  M  I  V  L  N  R  M  *  H  L  M  M  </second_frame>
            <third_frame>   N  Q  F  R  L  F  C  P  R  E  C  S  C  R  S  C  S  I  S  V  L   : E  L  Q  C  S  K  L  *  *  Q  D  P  G  W  I  L  *  F  V  W  C  P  H  G  V  Q  F  L  E  N  A  L  P  H  *  S  A  K  N  R  S  I  R  S  Y  *  L  G  S  H  P  Y  Q  *  S  C  G  L  Q  V  V  E  T  *  T  E  S  S  R  D  C  C  *  G  E  V  K  T  H  G  F  F  S  Q  Q  F  G  T  *  A  C  C  A  S  F  *  P  H  G  G  P  S  C  G  S  R  E  H  V  A  C  M  E  K  Y  *  L  *  S  *  G  N  S  R  E  Y  G  F  A  S  W  F  F  D  H  W  I  G  S  S  S  C  I  V  I  Q   : G  S  S  *  *  C  G  D  S  L  P  I  S  K  R  K  A  V  Y  R  F  R  *  C  C  N  E  L  C  K  D  R  W  K  :  G  V  Y  C  R  F  D  G  S  P  R  N  T  Y  S  I  *  H  I  W  S  T  W  R  L  *  R  V  Y  S  L  H  Q  S  I  L  Q  R  C  *  F  S  S  R  F  Q  *  *  W  D  C  F  F  I  G  R  S  F  R  L  W  N  G  R  Q  E  I  Q  V  C  G  K  H  *  C  R  K  *  I  S  L  F  W  *  S  R  T  A   : G  N  F  F  *  S  W  A  C  K  I  C  F  Y  T  C  K  I  S  F  V  D  R  R  C  *  L  P  S  C  T  Q  N  E  S  K  G  C  F  T  I  H  D  R  C  C  Q  R  K  S  T  A  S  S  K  T  A  H  C  F  T  *  E  W  S  Y  C  T  T  K  L  V  R  *  D  L  S  R  T  T  R  R  I  S  Y  R  G  K  I  Q  A  R  G  K  R  R  V  P  E  S  Q  G  S  I  *  *  E  S  S  P  L  L  T  P  S  A  L  S  Q  S  I  L  K  G  Q  C  T  W  I  I  G  T  S  A  K  C  E  R  S  *  *  T  A  S  L  *  T  V  *  S  S  S  T  K  T  Y  E  K  S  S  C  C  C  C  C  C  R  C  R  S  C  C  C  L  F  D  G  S  C  C  S  Q  D  *  P  S  R  G  P  S  R  S  S  C  C  H  S  H  S  C  S  S  S  S  N  N  C  S  S  Q  *  A  I  *  G  T  R  R :   L  *  K  S  *  W  R  C  R  Y  C  C  L  *  A  T  G  M  W  S  S  R  A  *  G  S  R  S  K  F  R  G  R  K  D  V  R  *  V  N  *  *  *  *  Y  *  I  G  C  D  T  *  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58304" stop="58239"/>
                    <exon start="56890" stop="56453"/>
                    <exon start="55799" stop="55699"/>
                    <exon start="54820" stop="54556"/>
                    <exon start="54480" stop="53829"/>
                    <exon start="53720" stop="53560"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1683</number_coding_nucleotides>
                  <number_encoded_amino_acids>561</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISLGSSAPENAPAEVVAYRYWNYNALSYDDKILDGFYDLYGVLMESNSSKMPSLIDLQRTEVSDHISWEAILISKAADSKLLKLEQRALEIAVEERSKLMDFSASSLVHELAVLVSDHMGGPVVDPESMLLAWRSISYNLKATLGSMVLPLGSLTIGLARHRALLFKVLADSVGIPCRLVKGKQYTGSDDVAMNYVKIDGREYIVDLMAAPGTLIPSDTSGVHGDYEESILSISPSSKDVDSHPGSNSSGIASSLGDHSDYGTADKRSRFAESTSAGNESPSSGNPELQETSSRAGHARSAFTHARSPSWTEGVSSPAAHKMKVKDASQYMIDAAKENPQLAQKLHTVLLESGVIAPPNLFAEIYPEQLDVSHIEGKSRLEERDEFQKVRGQSDKNRARFLPPLPYHSPYSKGNARGSLEPQPNVREVDEQQVSRQSEVAPPKHMKKVPVAAAAAAAAAAVASSMVVVAAKTNPHGDLPVAAAATATAAAVVATTAAVSKQYEAQGDCERADGDADTAVYEQQGCGHQEHEAAGANSEGERMSDKSTSNDSTKSDVTLDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="59217" PGL_stop="58444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59217" e_stop="58444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="59217" e_stop="58444" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59217" stop="58444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTCATTTGCATTTTCATACCCTTTTCTTGGTTTGCTCTAGCTGTTTAAGGGATAAAGGAACAATCTTTTTTGGTTTAGGCTGAGTTCTTGAATTTGTGTTCAAGATTGAGTCTTTTTGCTGCTCAGTAGGGAAGTGGTAACTGGAGTTTCTTCACAAACGAAGTAAAGTTTGGTTCTTGGATTTGATTTGGTTAAAAACAAGCTTAAACTATGCAGTTCTTGTTATTACAGGTTTTAAGGTAAGAGATTTGTAACTGTGATTCATGATTGTAGTGGGACAATGGAGAGTGTTGAGGAATGAGAAAGTCCTATACGTTGGTGGTTAAGGAGATAGGTGGTCTCCGTCTTGGATAGTTCATCACCAGTGAGCTAGCTTCCGGAGTTGAGTTAGACTCGGGATCCATTTATTTACTGAGAGGTTTATGGCCAGCTTTTTTGTTTCTTTAGTACAACTACTAAGCATTGTGGTTTAGTGAATACAACAATGAAAAATTTTCTCAAGAAACTTCATATTGGGTCCAACCAATCAGAAGATTCAGAAGGATCAACATCTTCCTCAAGGAGCAAGAAATTAACTGATGTTTCATCACCTGAAAAGCATTCAAGCTCTAGAAGCTATCATGGGTCTGATAATAAACCTTTTTCAGCAATTTCAGGATGGTTAAATTCAGTTACAAATAGGCATAGTCCCAGTCCTCCGTCTTCCTCAAATGTGAATAGAGGGAATAGAATGGAACATTCTGACTCTGTCAGTATTGGTGGCACTGATGC</gDNA_template>
            <first_frame> I  F  I  C  I  F  I  P  F  S  W  F  A  L  A  V  *  G  I  K  E  Q  S  F  L  V  *  A  E  F  L  N  L  C  S  R  L  S  L  F  A  A  Q  *  G  S  G  N  W  S  F  F  T  N  E  V  K  F  G  S  W  I  *  F  G  *  K  Q  A  *  T  M  Q  F  L  L  L  Q  V  L  R  *  E  I  C  N  C  D  S  *  L  *  W  D  N  G  E  C  *  G  M  R  K  S  Y  T  L  V  V  K  E  I  G  G  L  R  L  G  *  F  I  T  S  E  L  A  S  G  V  E  L  D  S  G  S  I  Y  L  L  R  G  L  W  P  A  F  L  F  L  *  Y  N  Y  *  A  L  W  F  S  E  Y  N  N  E  K  F  S  Q  E  T  S  Y  W  V  Q  P  I  R  R  F  R  R  I  N  I  F  L  K  E  Q  E  I  N  *  C  F  I  T  *  K  A  F  K  L  *  K  L  S  W  V  *  *  *  T  F  F  S  N  F  R  M  V  K  F  S  Y  K  *  A  *  S  Q  S  S  V  F  L  K  C  E  *  R  E  *  N  G  T  F  *  L  C  Q  Y  W  W  H  *  C </first_frame>
            <second_frame>  S  S  F  A  F  S  Y  P  F  L  G  L  L  *  L  F  K  G  *  R  N  N  L  F  W  F  R  L  S  S  *  I  C  V  Q  D  *  V  F  L  L  L  S  R  E  V  V  T  G  V  S  S  Q  T  K  *  S  L  V  L  G  F  D  L  V  K  N  K  L  K  L  C  S  S  C  Y  Y  R  F  *  G  K  R  F  V  T  V  I  H  D  C  S  G  T  M  E  S  V  E  E  *  E  S  P  I  R  W  W  L  R  R  *  V  V  S  V  L  D  S  S  S  P  V  S  *  L  P  E  L  S  *  T  R  D  P  F  I  Y  *  E  V  Y  G  Q  L  F  C  F  F  S  T  T  T  K  H  C  G  L  V  N  T  T  M  K  N  F  L  K  K  L  H  I  G  S  N  Q  S  E  D  S  E  G  S  T  S  S  S  R  S  K  K  L  T  D  V  S  S  P  E  K  H  S  S  S  R  S  Y  H  G  S  D  N  K  P  F  S  A  I  S  G  W  L  N  S  V  T  N  R  H  S  P  S  P  P  S  S  S  N  V  N  R  G  N  R  M  E  H  S  D  S  V  S  I  G  G  T  D   </second_frame>
            <third_frame>   L  H  L  H  F  H  T  L  F  L  V  C  S  S  C  L  R  D  K  G  T  I  F  F  G  L  G  *  V  L  E  F  V  F  K  I  E  S  F  C  C  S  V  G  K  W  *  L  E  F  L  H  K  R  S  K  V  W  F  L  D  L  I  W  L  K  T  S  L  N  Y  A  V  L  V  I  T  G  F  K  V  R  D  L  *  L  *  F  M  I  V  V  G  Q  W  R  V  L  R  N  E  K  V  L  Y  V  G  G  *  G  D  R  W  S  P  S  W  I  V  H  H  Q  *  A  S  F  R  S  *  V  R  L  G  I  H  L  F  T  E  R  F  M  A  S  F  F  V  S  L  V  Q  L  L  S  I  V  V  *  *  I  Q  Q  *  K  I  F  S  R  N  F  I  L  G  P  T  N  Q  K  I  Q  K  D  Q  H  L  P  Q  G  A  R  N  *  L  M  F  H  H  L  K  S  I  Q  A  L  E  A  I  M  G  L  I  I  N  L  F  Q  Q  F  Q  D  G  *  I  Q  L  Q  I  G  I  V  P  V  L  R  L  P  Q  M  *  I  E  G  I  E  W  N  I  L  T  L  S  V  L  V  A  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58799" stop="58446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVYGQLFCFFSTTTKHCGLVNTTMKNFLKKLHIGSNQSEDSEGSTSSSRSKKLTDVSSPEKHSSSRSYHGSDNKPFSAISGWLNSVTNRHSPSPPSSSNVNRGNRMEHSDSVSIGGTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="77821" PGL_stop="80538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77821" e_stop="78779"/>
            <exon e_start="80259" e_stop="80538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77821" e_stop="78779" e_length="959"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78780" i_stop="80258" i_length="1479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80259" e_stop="80538" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="78779"/>
              <exon start="80259" stop="80538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCCATTTTCATCTCCGCCTCTCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAATCTGGAATCTCACCAACTGTAAGCTCAGGTCTACTCTTGCGGGTCACAGCGGGTATGTGAATACTGTGGCCGTGTCCCCAGATGGTTCGTTGTGTGCTAGCGGAGGGAAAGATGGTGTCATATTGCTATGGGATTTGGCTGAAGGGAAGAAACTGTACTCTCTTGATGCTGGCTCCATTATCCACACCCTCTGTTTTAGCCCGAATAGGTATTGGCTCTGTGCTGCTACTGAATCTAGTATCAAGATTTGGGATTTGGAGAGCAAAAGCATCGTGGTTGATCTTAAAGTTGATCTGAAACAAGAGAGTGAAATGTTCGGAACTGCTGCTACCGATTCCAAAACCAAG : GTCATATACTGCACCAGTTTGAGCTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAATTAAAAGTCTTTTAGATTTTGAAGATTCTCCGTGTTTTTCATTATTATGAGGCCTCAACTGTTTCAATTTTGGATTTTTATTTTGTTACATTGGATATCTGTCTTGCTATAAATCTAAGTTGTTTTGCTTAATCTTC</gDNA_template>
            <first_frame> F  S  P  F  S  S  P  P  L  L  S  L  P  P  K  V  I  S  L  T  A  A  T  N  L  R  K  C  R  K  N  H  *  S  S  A  V  P  *  K  P  T  L  T  G  S  L  L  L  Q  P  Q  L  T  T  P  T  *  L  S  P  P  P  G  I  S  P  S  S  S  G  L  *  L  K  T  A  H  N  T  V  S  L  V  A  V  L  P  D  M  A  I  S  L  K  M  S  C  C  R  L  T  A  C  L  H  S  P  V  H  G  T  V  S  S  V  Y  G  I  F  K  L  E  Q  L  L  V  V  S  L  D  T  L  K  M  F  S  L  L  H  S  L  L  T  T  V  R  L  S  L  L  P  V  T  R  P  S  S  Y  G  T  H  S  V  S  A  S  T  Q  F  R  N  R  I  H  T  L  I  G  F  L  V  S  V  L  A  Q  I  I  F  S  P  L  L  C  L  V  H  G  I  A  L  S  K  S  G  I  S  P  T  V  S  S  G  L  L  L  R  V  T  A  G  M  *  I  L  W  P  C  P  Q  M  V  R  C  V  L  A  E  G  K  M  V  S  Y  C  Y  G  I  W  L  K  G  R  N  C  T  L  L  M  L  A  P  L  S  T  P  S  V  L  A  R  I  G  I  G  S  V  L  L  L  N  L  V  S  R  F  G  I  W  R  A  K  A  S  W  L  I  L  K  L  I  *  N  K  R  V  K  C  S  E  L  L  L  P  I  P  K  P  R :   S  Y  T  A  P  V  *  A  G  V  L  M  E  A  H  F  S  V  A  I  Q  M  V  *  L  E  F  G  E  L  D  V  I  R  E  E  E  D  R  R  E  P  F  G  Q  Y  *  I  K  S  L  L  D  F  E  D  S  P  C  F  S  L  L  *  G  L  N  C  F  N  F  G  F  L  F  C  Y  I  G  Y  L  S  C  Y  K  S  K  L  F  C  L  I  F </first_frame>
            <second_frame>  S  L  H  F  H  L  R  L  S  F  L  C  H  Q  R  *  F  H  *  R  P  P  P  I  *  E  N  V  A  R  I  T  S  P  P  R  Y  H  E  S  P  H  *  L  G  H  C  Y  C  N  P  N  *  Q  L  R  H  D  C  H  L  L  Q  G  *  V  H  H  R  L  V  F  D  *  R  R  L  T  I  R  C  P  S  S  P  S  Y  R  T  W  P  F  R  *  R  C  R  V  V  V  *  R  H  V  C  T  L  R  F  M  G  R  *  A  P  F  M  G  S  S  S  W  N  N  C  S  S  F  R  W  T  H  *  R  C  S  L  C  C  I  L  C  *  Q  P  S  D  C  L  C  F  P  *  Q  D  H  Q  A  M  E  H  T  R  *  V  Q  V  H  N  S  G  T  G  F  T  L  *  L  G  F  L  C  P  F  *  P  K  *  S  S  A  H  Y  C  V  W  F  M  G  S  H  C  Q  N  L  E  S  H  Q  L  *  A  Q  V  Y  S  C  G  S  Q  R  V  C  E  Y  C  G  R  V  P  R  W  F  V  V  C  *  R  R  E  R  W  C  H  I  A  M  G  F  G  *  R  E  E  T  V  L  S  *  C  W  L  H  Y  P  H  P  L  F  *  P  E  *  V  L  A  L  C  C  Y  *  I  *  Y  Q  D  L  G  F  G  E  Q  K  H  R  G  *  S  *  S  *  S  E  T  R  E  *  N  V  R  N  C  C  Y  R  F  Q  N  Q   : G  H  I  L  H  Q  F  E  L  E  C  *  W  K  H  T  F  Q  W  L  Y  R  W  S  D  *  S  L  G  N  W  T  L  L  G  K  K  R  I  D  A  S  H  L  A  N  T  E  L  K  V  F  *  I  L  K  I  L  R  V  F  H  Y  Y  E  A  S  T  V  S  I  L  D  F  Y  F  V  T  L  D  I  C  L  A  I  N  L  S  C  F  A  *  S   </second_frame>
            <third_frame>   L  S  I  F  I  S  A  S  P  F  S  A  T  K  G  D  F  T  D  G  R  H  Q  S  E  K  M  S  Q  E  S  L  V  L  R  G  T  M  K  A  H  T  D  W  V  T  A  I  A  T  P  I  D  N  S  D  M  I  V  T  S  S  R  D  K  S  I  I  V  W  S  L  T  K  D  G  S  Q  Y  G  V  P  R  R  R  L  T  G  H  G  H  F  V  E  D  V  V  L  S  S  D  G  M  F  A  L  S  G  S  W  D  G  E  L  R  L  W  D  L  Q  A  G  T  T  A  R  R  F  V  G  H  T  K  D  V  L  S  V  A  F  S  V  D  N  R  Q  I  V  S  A  S  R  D  K  T  I  K  L  W  N  T  L  G  E  C  K  Y  T  I  Q  E  Q  D  S  H  S  D  W  V  S  C  V  R  F  S  P  N  N  L  Q  P  T  I  V  S  G  S  W  D  R  T  V  K  I  W  N  L  T  N  C  K  L  R  S  T  L  A  G  H  S  G  Y  V  N  T  V  A  V  S  P  D  G  S  L  C  A  S  G  G  K  D  G  V  I  L  L  W  D  L  A  E  G  K  K  L  Y  S  L  D  A  G  S  I  I  H  T  L  C  F  S  P  N  R  Y  W  L  C  A  A  T  E  S  S  I  K  I  W  D  L  E  S  K  S  I  V  V  D  L  K  V  D  L  K  Q  E  S  E  M  F  G  T  A  A  T  D  S  K  T  K  :  V  I  Y  C  T  S  L  S  W  S  A  D  G  S  T  L  F  S  G  Y  T  D  G  L  I  R  V  W  G  I  G  R  Y  *  G  R  R  G  S  T  R  A  I  W  P  I  L  N  *  K  S  F  R  F  *  R  F  S  V  F  F  I  I  M  R  P  Q  L  F  Q  F  W  I  F  I  L  L  H  W  I  S  V  L  L  *  I  *  V  V  L  L  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77823" stop="78779"/>
                    <exon start="80259" stop="80360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSIFISASPFSATKGDFTDGRHQSEKMSQESLVLRGTMKAHTDWVTAIATPIDNSDMIVTSSRDKSIIVWSLTKDGSQYGVPRRRLTGHGHFVEDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKTIKLWNTLGECKYTIQEQDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRSTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHTLCFSPNRYWLCAATESSIKIWDLESKSIVVDLKVDLKQESEMFGTAATDSKTKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIGRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77846" e_stop="78433"/>
            <exon e_start="80282" e_stop="80401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77846" e_stop="78433" e_length="588"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78434" i_stop="80281" i_length="1848"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="80282" e_stop="80401" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77846" stop="78433"/>
              <exon start="80282" stop="80401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTTCTCTGCCACCAAAGGTGATTTCACTGACGGCCGCCACCAATCTGAGAAAATGTCGCAAGAATCACTAGTCCTCCGCGGTACCATGAAAGCCCACACTGACTGGGTCACTGCTATTGCAACCCCAATTGACAACTCCGACATGATTGTCACCTCCTCCAGGGATAAGTCCATCATCGTCTGGTCTTTGACTAAAGACGGCTCACAATACGGTGTCCCTCGTCGCCGTCTTACCGGACATGGCCATTTCGTTGAAGATGTCGTGTTGTCGTCTGACGGCATGTTTGCACTCTCCGGTTCATGGGACGGTGAGCTCCGTTTATGGGATCTTCAAGCTGGAACAACTGCTCGTCGTTTCGTTGGACACACTAAAGATGTTCTCTCTGTTGCATTCTCTGTTGACAACCGTCAGATTGTCTCTGCTTCCCGTGACAAGACCATCAAGCTATGGAACACACTCGGTGAGTGCAAGTACACAATTCAGGAACAGGATTCACACTCTGATTGGGTTTCTTGTGTCCGTTTTAGCCCAAATAATCTTCAGCCCACTATTGTGTCTGGTTCATGGGATCGCACTGTCAAAAT : CTGGAGTGCTGATGGAAGCACACTTTTCAGTGGCTATACAGATGGTCTGATTAGAGTTTGGGGAATTGGACGTTATTAGGGAAGAAGAGGATCGACGCGAGCCATTTGGCCAATACTGAA</gDNA_template>
            <first_frame> S  F  L  C  H  Q  R  *  F  H  *  R  P  P  P  I  *  E  N  V  A  R  I  T  S  P  P  R  Y  H  E  S  P  H  *  L  G  H  C  Y  C  N  P  N  *  Q  L  R  H  D  C  H  L  L  Q  G  *  V  H  H  R  L  V  F  D  *  R  R  L  T  I  R  C  P  S  S  P  S  Y  R  T  W  P  F  R  *  R  C  R  V  V  V  *  R  H  V  C  T  L  R  F  M  G  R  *  A  P  F  M  G  S  S  S  W  N  N  C  S  S  F  R  W  T  H  *  R  C  S  L  C  C  I  L  C  *  Q  P  S  D  C  L  C  F  P  *  Q  D  H  Q  A  M  E  H  T  R  *  V  Q  V  H  N  S  G  T  G  F  T  L  *  L  G  F  L  C  P  F  *  P  K  *  S  S  A  H  Y  C  V  W  F  M  G  S  H  C  Q  N  :  L  E  C  *  W  K  H  T  F  Q  W  L  Y  R  W  S  D  *  S  L  G  N  W  T  L  L  G  K  K  R  I  D  A  S  H  L  A  N  T  E </first_frame>
            <second_frame>  P  F  S  A  T  K  G  D  F  T  D  G  R  H  Q  S  E  K  M  S  Q  E  S  L  V  L  R  G  T  M  K  A  H  T  D  W  V  T  A  I  A  T  P  I  D  N  S  D  M  I  V  T  S  S  R  D  K  S  I  I  V  W  S  L  T  K  D  G  S  Q  Y  G  V  P  R  R  R  L  T  G  H  G  H  F  V  E  D  V  V  L  S  S  D  G  M  F  A  L  S  G  S  W  D  G  E  L  R  L  W  D  L  Q  A  G  T  T  A  R  R  F  V  G  H  T  K  D  V  L  S  V  A  F  S  V  D  N  R  Q  I  V  S  A  S  R  D  K  T  I  K  L  W  N  T  L  G  E  C  K  Y  T  I  Q  E  Q  D  S  H  S  D  W  V  S  C  V  R  F  S  P  N  N  L  Q  P  T  I  V  S  G  S  W  D  R  T  V  K  I :   W  S  A  D  G  S  T  L  F  S  G  Y  T  D  G  L  I  R  V  W  G  I  G  R  Y  *  G  R  R  G  S  T  R  A  I  W  P  I  L   </second_frame>
            <third_frame>   L  S  L  P  P  K  V  I  S  L  T  A  A  T  N  L  R  K  C  R  K  N  H  *  S  S  A  V  P  *  K  P  T  L  T  G  S  L  L  L  Q  P  Q  L  T  T  P  T  *  L  S  P  P  P  G  I  S  P  S  S  S  G  L  *  L  K  T  A  H  N  T  V  S  L  V  A  V  L  P  D  M  A  I  S  L  K  M  S  C  C  R  L  T  A  C  L  H  S  P  V  H  G  T  V  S  S  V  Y  G  I  F  K  L  E  Q  L  L  V  V  S  L  D  T  L  K  M  F  S  L  L  H  S  L  L  T  T  V  R  L  S  L  L  P  V  T  R  P  S  S  Y  G  T  H  S  V  S  A  S  T  Q  F  R  N  R  I  H  T  L  I  G  F  L  V  S  V  L  A  Q  I  I  F  S  P  L  L  C  L  V  H  G  I  A  L  S  K   : S  G  V  L  M  E  A  H  F  S  V  A  I  Q  M  V  *  L  E  F  G  E  L  D  V  I  R  E  E  E  D  R  R  E  P  F  G  Q  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77847" stop="78433"/>
                    <exon start="80282" stop="80360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSATKGDFTDGRHQSEKMSQESLVLRGTMKAHTDWVTAIATPIDNSDMIVTSSRDKSIIVWSLTKDGSQYGVPRRRLTGHGHFVEDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKTIKLWNTLGECKYTIQEQDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWSADGSTLFSGYTDGLIRVWGIGRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="81307" PGL_stop="87701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81307" e_stop="81369"/>
            <exon e_start="82638" e_stop="82679"/>
            <exon e_start="82859" e_stop="82930"/>
            <exon e_start="83918" e_stop="83987"/>
            <exon e_start="84889" e_stop="85041"/>
            <exon e_start="86009" e_stop="86120"/>
            <exon e_start="87517" e_stop="87562"/>
            <exon e_start="87670" e_stop="87701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.889"/>
          <exon-intron don_prob="0.977" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.980" e_score="0.986"/>
          <exon-intron don_prob="0.996" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="81307" e_stop="81369" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81370" i_stop="82637" i_length="1268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82638" e_stop="82679" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82680" i_stop="82858" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82859" e_stop="82930" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="82931" i_stop="83917" i_length="987"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="83918" e_stop="83987" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.812" acc_prob="0.980">
            <gDNA_intron_boundary i_start="83988" i_stop="84888" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84889" e_stop="85041" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.703">
            <gDNA_intron_boundary i_start="85042" i_stop="86008" i_length="967"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86009" e_stop="86120" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86121" i_stop="87516" i_length="1396"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87517" e_stop="87562" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.937" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87563" i_stop="87669" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="0.969">
            <gDNA_exon_boundary e_start="87670" e_stop="87701" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81307" stop="81369"/>
              <exon start="82638" stop="82679"/>
              <exon start="82859" stop="82930"/>
              <exon start="83918" stop="83987"/>
              <exon start="84889" stop="85041"/>
              <exon start="86009" stop="86120"/>
              <exon start="87517" stop="87562"/>
              <exon start="87670" stop="87701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATTGTCACCGCAAGCACAAACCCTACGCGTCCTCTCACTCAATTAACCGAGCCCCATGG : ATATTGAAGAGGACATCAAGGCGCTGCAGCTTGATTCATCTG : AAGATACTGTGTTGGTCAACGTGGAAGATGCTAGACCTGGTGAAGCTATAAAACATGATAAAGTTGATGGAG : AGGATAGTTTTATGGAAGAAGAGAGGAAGACTGATGATGTTGGGAAACCTGATATGCCGGAAGATGGTAG : AGTTAAGAGATGAAGCACATCCAGACTTAAAGCCAGAGCATGTCGATCCAAAGGGTGTCTCTGGAAAAGAAAGTTCTCCCCCAGAAGATATGCAGGTGGAGGTTGAAGTCAATAAAAAGAGGCATCTGAATGTGGTATTTATTGGTCACGTGG : ATGCTGGAAAGTCTACTATTGGAGGACAAATACTATTACTTAGTGGTCAAGTTGATGACCGTACGATACAAAAGTATGAGAAAGAAGCGAAGGATAAAAACAGAGAGAGCTG : GTATATGGCCTATATTATGGATACAAATGAAGAAGAGAGGGTGAAG : GGAATAACAGTTGAAGTAGGAAGAGCACATTT</gDNA_template>
            <first_frame> I  Y  C  H  R  K  H  K  P  Y  A  S  S  H  S  I  N  R  A  P  W  :  I  L  K  R  T  S  R  R  C  S  L  I  H  L  :  K  I  L  C  W  S  T  W  K  M  L  D  L  V  K  L  *  N  M  I  K  L  M  E  :  R  I  V  L  W  K  K  R  G  R  L  M  M  L  G  N  L  I  C  R  K  M  V   : E  L  R  D  E  A  H  P  D  L  K  P  E  H  V  D  P  K  G  V  S  G  K  E  S  S  P  P  E  D  M  Q  V  E  V  E  V  N  K  K  R  H  L  N  V  V  F  I  G  H  V   : D  A  G  K  S  T  I  G  G  Q  I  L  L  L  S  G  Q  V  D  D  R  T  I  Q  K  Y  E  K  E  A  K  D  K  N  R  E  S  W :   Y  M  A  Y  I  M  D  T  N  E  E  E  R  V  K  :  G  I  T  V  E  V  G  R  A  H   </first_frame>
            <second_frame>  F  I  V  T  A  S  T  N  P  T  R  P  L  T  Q  L  T  E  P  H  G :   Y  *  R  G  H  Q  G  A  A  A  *  F  I  * :   R  Y  C  V  G  Q  R  G  R  C  *  T  W  *  S  Y  K  T  *  *  S  *  W  R :   G  *  F  Y  G  R  R  E  E  D  *  *  C  W  E  T  *  Y  A  G  R  W  *  :  S  *  E  M  K  H  I  Q  T  *  S  Q  S  M  S  I  Q  R  V  S  L  E  K  K  V  L  P  Q  K  I  C  R  W  R  L  K  S  I  K  R  G  I  *  M  W  Y  L  L  V  T  W  :  M  L  E  S  L  L  L  E  D  K  Y  Y  Y  L  V  V  K  L  M  T  V  R  Y  K  S  M  R  K  K  R  R  I  K  T  E  R  A   : G  I  W  P  I  L  W  I  Q  M  K  K  R  G  *  R :   E  *  Q  L  K  *  E  E  H  I  </second_frame>
            <third_frame>   L  L  S  P  Q  A  Q  T  L  R  V  L  S  L  N  *  P  S  P  M   : D  I  E  E  D  I  K  A  L  Q  L  D  S  S   : E  D  T  V  L  V  N  V  E  D  A  R  P  G  E  A  I  K  H  D  K  V  D  G   : E  D  S  F  M  E  E  E  R  K  T  D  D  V  G  K  P  D  M  P  E  D  G  R :   V  K  R  *  S  T  S  R  L  K  A  R  A  C  R  S  K  G  C  L  W  K  R  K  F  S  P  R  R  Y  A  G  G  G  *  S  Q  *  K  E  A  S  E  C  G  I  Y  W  S  R  G :   C  W  K  V  Y  Y  W  R  T  N  T  I  T  *  W  S  S  *  *  P  Y  D  T  K  V  *  E  R  S  E  G  *  K  Q  R  E  L  :  V  Y  G  L  Y  Y  G  Y  K  *  R  R  E  G  E   : G  N  N  S  *  S  R  K  S  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0159P11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82910" stop="82930"/>
                    <exon start="83918" stop="83987"/>
                    <exon start="84889" stop="85041"/>
                    <exon start="86009" stop="86120"/>
                    <exon start="87517" stop="87562"/>
                    <exon start="87670" stop="87699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMIKLMERIVLWKKRGRLMMLGNLICRKMVELRDEAHPDLKPEHVDPKGVSGKESSPPEDMQVEVEVNKKRHLNVVFIGHVDAGKSTIGGQILLLSGQVDDRTIQKYEKEAKDKNRESWYMAYIMDTNEEERVKGITVEVGRAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 24480 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 18624 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1693 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:51:40
-->
