<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:39:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616314" ref_strand="+" ref_description="SGN-E616314 [66122]">
      <seq>ggcgatcgcttatctacggagattcgcttcccgaatcgcccgaaacgcttctctatcatcttccttcggatcctcaatcactcgatcttccgcttcatcgtcgtcgccgtcggcttccgccaaggtcgccgatcggattgtcaagctatctgccgtcgatccggacgggaacaaacgtgaggttatcggactctcgggtcaaacactgctcaaagccctaacgaatcaggggttaattgacccggattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcatatgatgagaagtatgttttgaagaggaattctagagctagagttttgaacaagcactctagacttggatgtcaggtggttctttctcaggagcttcaaggtatggttgtggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaggtttttgaattggaattttagtattttgagataataataatatatgggaacttttggtacttgataatgttttttttaaaaaaaaattattcagtatgttttagccatctagcaatattcccaattcgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3415" stop="19589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3715" g_stop="4352" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E616314" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3715" e_stop="4352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATCGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTT-----TTAATTACTCAGTATGTTTAAGCCAT-T-GGAATGTTCCCAATTCGAAGTA</genome_strand>
        <mrna_strand>GGCGATCGCTTATCTACGGAGATTCGCTTCCCGAATCGCCCGAAACGCTTCTCTATCATCTTCCTTCGGATCCTCAATCACTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCTGCCGTCGATCCGGACGGGAACAAACGTGAGGTTATCGGACTCTCGGGTCAAACACTGCTCAAAGCCCTAACGAATCAGGGGTTAATTGACCCGGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCATATGATGAGAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGAGTTTTGAACAAGCACTCTAGACTTGGATGTCAGGTGGTTCTTTCTCAGGAGCTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGT-ATTT-TG---A-GATAATAATAATATATGGGAACTTTTGGTACTTGATAATGTTTTTTTTAAAAAAAAATTATTCAGTATGTTTTAGCCATCTAGCAATATTCCCAATTCGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279927" ref_strand="+" ref_description="SGN-E279927 [cLER-8-K10]">
      <seq>gatcgcttatctacggagatttgcttcacgaatcgctcgaaacacttctctatcatcctccttcggatcctcaatcgctcgatcttccgcttcatcgtcgtcgccgtcggcttccgccaaggtcgccgatcggattgtcaagctatcagctgtcgatccagacggtaacaaacgcgatgttgtcggactctcgggtcaaacactgctcaaagcactaacgaatcaggggttaattgacccagattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcgtatgatgaaaagtatgttttgaagaggaattctagagctagggttttgaacaagcactctaggcttggatgtcaggtggttctttcccaggaacttcaaggtatggttgtggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaggtttttgaattggaattttagtgttttgtgataataataataataatatatggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3418" stop="4577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3718" g_stop="4277" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E279927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3718" e_stop="4277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAAC</genome_strand>
        <mrna_strand>GATCGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545172" ref_strand="+" ref_description="SGN-E545172 [TUS-67-O4](-)">
      <seq>cgcttatctacggagatttgcttcacgaatcgctcgaaacacttctctatcatcctccttcggatcctcaatcgctcgatcttccgcttcatcgtcgtcgccgtcggcttccgccaaggtcgccgatcggattgtcaagctatcagctgtcgatccagacggtaacaaacgcgatgttgtcggactctcgggtcaaacactgctcaaagcactaacgaatcaggggttaattgacccagattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcgtatgatgaaaagtatgttttgaagaggaattctagagctagggttttgaacaagcactctaggcttggatgtcaggtggttctttcccaggaacttcaaggtatggttgtggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaggtttttgaattggaattttagtgttttgtgataataataataatatatggaaacttttggtacttgatgatgtttcttttttaattactcagtatgttaagccattggaatgttcccaattcgaagtaagtggcaatatgatgtcgaaactgtttgaagttcacaactttgtttgttttaattttgaaatgaatgatttcccatttcatgttaaaaaaaaaaaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3421" stop="4739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3721" g_stop="4436" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="728"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E545172" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3721" e_stop="4436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTTTAATTACTCAGTATGTTTAAGCCATTGGAATGTTCCCAATTCGAAGTAAGTGGCAATATGATGTCGAAACTGTTTGAAGTTCACAACTTTGTTTGTTTTAATTTTGAAATGAATGATTTCCCATTTCATGTT</genome_strand>
        <mrna_strand>CGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTG---ATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTTTAATTACTCAGTATG-TTAAGCCATTGGAATGTTCCCAATTCGAAGTAAGTGGCAATATGATGTCGAAACTGTTTGAAGTTCACAACTTTGTTTGTTTTAATTTTGAAATGAATGATTTCCCATTTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549163" ref_strand="+" ref_description="SGN-E549163 [TUS-67-O4]">
      <seq>cgcttatctacggagatttgcttcacgaatcgctcgaaacacttctctatcatcctccttcggatcctcaatcgctcgatcttccgcttcatcgtcgtcgccgtcggcttccgccaaggtcgccgatcggattgtcaagctatcagctgtcgatccagacggtaacaaacgcgatgttgtcggactctcgggtcaaacactgctcaaagcactaacgaatcaggggttaattgacccagattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcgtatgatgaaaagtatgttttgaagaggaattctagagctagggttttgaacaagcactctaggcttggatgtcaggtggttctttcccaggaacttcaaggtatggttgtggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaggtttttgaattggaattttagtgttttgtgataataataataatatatggaaacttttggtacttgatgatgtttcttttttaattactcagtatgttaagccattggaatgttcccaattcgaagtaagtggcaatatgatgtcgaaactngtttgagttcacaacttttgttgttttattttgaaatgaatggattcccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3421" stop="4730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3721" g_stop="4430" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E549163" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3721" e_stop="4430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTTTAATTACTCAGTATGTTTAAGCCATTGGAATGTTCCCAATTCGAAGTAAGTGGCAATATGATGTCGAAACTGTTTGAAGTTCACAACTTTGTTTGTTTTAATTTTGAAATGAATGATTTCCCATTT</genome_strand>
        <mrna_strand>CGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTG---ATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTTTAATTACTCAGTATG-TTAAGCCATTGGAATGTTCCCAATTCGAAGTAAGTGGCAATATGATGTCGAAACTNGTTTGAGTTCACAACTTTTGTTGTTTT-ATTTTGAAATGAATGGATTCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308259" ref_strand="+" ref_description="SGN-E308259 [cLEZ-6-I13]">
      <seq>gcttatctacggagatttgcttcacgaatcgctcgaaacacttctctatcatcctccttcggatcctcaatcgctcgatcttccgcttcatcgtcgacgccgtcggcttccgccaaggtcgccgatcggattgtcaagctatcagctgtcgatccagacggtaacaaacgcgatgttgtcggactctcgggtcaaacactgctcaaagcactaacgaatcaggggttaattgacccagattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcgtatgatgaaaagtatgttttgaagaggaattctagagctagggttttgaacaagcactctaggcttggatgtcaggtggatctttcccaggaacttcaaggtatggttgaggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaggtttttgaattggaattatagtgttttgtgatgataatgataatatatggaaacttttggtactcgatgatgtgtctttgttaattactcagtatgttaagccattggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3422" stop="4635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3722" g_stop="4335" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E308259" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3722" e_stop="4335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTTTAATTACTCAGTATGTTTAAGCCATTGGAAT</genome_strand>
        <mrna_strand>GCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGACGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGATCTTTCCCAGGAACTTCAAGGTATGGTTGAGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTATAGTGTTTTGTG---ATGATAATGATAATATATGGAAACTTTTGGTACTCGATGATGTGTCTTTGTTAATTACTCAGTATG-TTAAGCCATTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611666" ref_strand="+" ref_description="SGN-E611666 [61420]">
      <seq>cggacgggaacaaacgtgaggttatcggactctcgggtcaaacactgctcaaagccctaacgaatcaggggttaattgacccggattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcatatgatgagaagtatgttttgaagaggaattctagagctagagttttgaacaagcactctagacttggatgtcaggtggttctttctcaggagcttcaaggtatggttgtggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaggtttttgaattggaattttagtattttgagataataataatatatgggaacttttggtacttgataatgtttttttttaaaaaaaaattattcagtatgttttagccactagaatattcccaattcgaactaagtggcaatatgatgtcgaagttggctgaagttcacaactttgtttgtttgaattttgaaatgaatgatttcccatttcatgttatatccttataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3576" stop="4749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3876" g_stop="4449" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E611666" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3876" e_stop="4449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTT------TAATTACTCAGTATGTTTAAGCCATTGGAATGTTCCCAATTCGAAGTAAGTGGCAATATGATGTCGAAACTGTTTGAAGTTCACAACTTTGTTTGTTTTAATTTTGAAATGAATGATTTCCCATTTCATGTTATATCCTTGTAAG</genome_strand>
        <mrna_strand>CGGACGGGAACAAACGTGAGGTTATCGGACTCTCGGGTCAAACACTGCTCAAAGCCCTAACGAATCAGGGGTTAATTGACCCGGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCATATGATGAGAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGAGTTTTGAACAAGCACTCTAGACTTGGATGTCAGGTGGTTCTTTCTCAGGAGCTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGT-ATTT-TG---A-GATAATAATAATATATGGGAACTTTTGGTACTTGATAATGTTTTTTTTTAAAAAAAAATTATTCAGTATGTTTTAGCCACTAGAATATTCCCAATTCGAACTAAGTGGCAATATGATGTCGAAGTTGGCTGAAGTTCACAACTTTGTTTGTTTGAATTTTGAAATGAATGATTTCCCATTTCATGTTATATCCTTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586913" ref_strand="+" ref_description="SGN-E586913 [75749]">
      <seq>aacgaatcaggggttaattgacccggattctcatcggcttgaagatatcgatgcttgttcagctgaatgtgaggtacacattgctcaggaatggctcgagaagcttccaccagcttcgtatgatgagaagtatgttttgaagaggaattctagagctagggttttgaacaagcactctaggcttggatgtcaggtggttctttcccaggagcttcaaggtatggttgtggcacttcctgaacccaagccttgggatatcccgtaaggtgaaatgaaaatttgttgaagtttttgaattggaattttagtgttttgagataataataataatatatgggaacttttggttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3634" stop="4586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3934" g_stop="4289" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E586913" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3934" e_stop="4289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTG</genome_strand>
        <mrna_strand>AACGAATCAGGGGTTAATTGACCCGGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAGAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAGCTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAAGTTTTTGAATTGGAATTTTAGTG-TTT-TGA-GATAATAATAATAATATATGGGAACTTTTGGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711834" ref_strand="+" ref_description="SGN-E711834 [FB03AE09]">
      <seq>ctctagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaacttccctcccggacatggcaacttctttggaaatggttatcactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaatatttcttcatccttcttttcattttggtttttcctcatatgaagcttcgatgtttctttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7508" stop="6372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7208" g_stop="6664" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E711834" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7208" e_stop="6664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCATGTTAATATTTCTTCATCCTTCTTTTCATTTTGGTTTTTCCTCATATGAAGCTTCGATGTTTCTTTGTAGATCCTTGCA</genome_strand>
        <mrna_strand>CTCTAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCATGTTAATATTTCTTCATCCTTCTTTTCATTTTGGTTTTTCCTCATATGAAGCTTCGATGTTTCTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734784" ref_strand="+" ref_description="SGN-E734784 [LB13CD01]">
      <seq>gcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaacataaacttaaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaacttccctcccggacatggcaacttctttggaaatggttatcactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8061" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7761" g_stop="7741" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7301" g_stop="6742" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="581" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="598"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E734784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7761" e_stop="7741"/>
          <exon e_start="7301" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>GCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349303" ref_strand="+" ref_description="SGN-E349303 [cTOS-1-A17]">
      <seq>caccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaacataaacttaaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8060" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7760" g_stop="7741" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7301" g_stop="6742" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="580" r_length="560" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="604"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E349303" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7760" e_stop="7741"/>
          <exon e_start="7301" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691231" ref_strand="+" ref_description="SGN-E691231 [LH_Ea05J05]">
      <seq>ccgttagaggcagctgactgcactgaaggctgtgataaagtgcctcgaagaccataaacttgaggcactataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttggctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgatacccatgttccgccattccttggtactgcctacaacttccctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7588" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7293" g_stop="6742" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="565"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E691231" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7293" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CCGTTAGAGGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCCTCGAAGACCATAAACTTGAGGCACTATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGGCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGATACCCATGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691237" ref_strand="+" ref_description="SGN-E691237 [LH_Ea05J11]">
      <seq>cgctagaagcagctgactgcactgaaggctgtgataaagtgcctcgaagaccataaacttgaggcactataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttggctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgatacccatgttccgccattccttggtactgcctacaacttccctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7590" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7292" g_stop="6742" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="564"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E691237" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7292" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CGCTAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCCTCGAAGACCATAAACTTGAGGCACTATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGGCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGATACCCATGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695077" ref_strand="+" ref_description="SGN-E695077 [LH_Ea05J11](-)">
      <seq>cgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataaacttgaggcactataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttggctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgatacccatgttccgccattccttggtactgcctacaacttccctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatttaatggggttttaatatatgcacactgcctttcatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7590" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7290" g_stop="6742" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E695077" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7290" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAACTTGAGGCACTATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGGCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGATACCCATGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATTTAATGGGGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695071" ref_strand="+" ref_description="SGN-E695071 [LH_Ea05J05](-)">
      <seq>cgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataaacttgaggcactataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttggctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgatacccatgttccgccattccttggtactgcctacaacttccctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactatgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7590" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7290" g_stop="6742" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="568"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E695071" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7290" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAACTTGAGGCACTATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGGCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGATACCCATGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTATGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220113" ref_strand="+" ref_description="SGN-E220113 [cLEL-12-J2](-)">
      <seq>agaaagaaaggcagacaagaaagagcaactgaagttgccaaccctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgcccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttcatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7483" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7183" g_stop="6742" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="460"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E220113" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7183" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>AGAAAG-AAAGGCAGACAAG-AAAGAGCAACTGAAGTTGCCAACCCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGCCCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTCATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236027" ref_strand="+" ref_description="SGN-E236027 [cLED-16-B3]">
      <seq>caagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7467" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7167" g_stop="6742" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="448"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E236027" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7167" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224215" ref_strand="+" ref_description="SGN-E224215 [cLEL-19-F1](-)">
      <seq>agaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7465" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7165" g_stop="6742" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="446"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E224215" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7165" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>AGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225190" ref_strand="+" ref_description="SGN-E225190 [cLEL-17-K13](-)">
      <seq>cgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7421" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7121" g_stop="6742" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="405"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E225190" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7121" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440297" ref_strand="-" ref_description="SGN-E440297 [cSTA-16-C12]">
      <seq>ccactaatgttgcctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacattccgtcattccttggtactgcctacaactttcctcccggacatggcaacttcttcggaaatggttaccactatcaggcaacttacctgcactaatcgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcactgcctttcatgctaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7390" stop="6454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7090" g_stop="6742" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="370"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E440297" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440297" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7090" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACATTCCGTCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTCGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATCGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATG--CACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220498" ref_strand="+" ref_description="SGN-E220498 [cLEL-12-J2](-)">
      <seq>ctagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatggccgcccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7387" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7087" g_stop="6742" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E220498" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7087" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGGCCGCCCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224063" ref_strand="+" ref_description="SGN-E224063 [cLEL-19-F1](-)">
      <seq>ctagtagaatgactgataggtatccccagtacatatatgaccgacccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7357" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7057" g_stop="6742" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="321" polyA_stop="339"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E224063" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7057" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGA-CCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>CTAGTAGAATGACTGATAGGTATCCCCAGTACATATATGACCGACCCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225636" ref_strand="+" ref_description="SGN-E225636 [cLEL-17-K13](-)">
      <seq>accgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtactgcctacaactttcctcccggacatggcaacttctttggaaatggttaccactatcaggcaacttacctgcactaattgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcacactgcctttcatgttaacccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7318" stop="6437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7018" g_stop="6742" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="302"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E225636" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7018" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</genome_strand>
        <mrna_strand>ACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443092" ref_strand="-" ref_description="SGN-E443092 [cSTA-36-A12]">
      <seq>tgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggagctcgagccactaatgttgcctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacactcacgttccgtcattccttggtactgcctacaactttcctcccggacatggcaacttcttcggaaatggttaccactatcaggcaacttacctgcactaatcgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcactgcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8062" stop="6454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7762" g_stop="7741" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7301" g_stop="6744" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="578" r_length="556" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E443092" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443092" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7762" e_stop="7741"/>
          <exon e_start="7301" e_stop="6744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTC</genome_strand>
        <mrna_strand>TGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAGCTCGAGCCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACTCACGTTCCGTCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTCGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATCGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATG--CACTGCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599887" ref_strand="-" ref_description="SGN-E599887 [52885]">
      <seq>ttgacgtgttgcttaataatggaagacatatagatgctgttaatctagcttttgcgtttgactgactgaccaagttttcacccggtttcactactaaaatcttacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataaacttgaggcgcaataccctgtggatcctctccagaatcggattcaccagctggagaaggaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggagctcgagccactaatgttgcctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacattccgtcattccttggtactgcctacaactttcctcccggacatggcaacttcttcggaaatggttaccactatcaggcaacttacctgcactaatcgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaatatatgcactgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8210" stop="6454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7910" g_stop="7741" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7301" g_stop="6745" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="726" r_length="555" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E599887" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599887" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7910" e_stop="7741"/>
          <exon e_start="7301" e_stop="6745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGA-CAAGTTTTCA-CCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTT</genome_strand>
        <mrna_strand>TTGACGTGTTGCTTAATAATGGAAGACATATAGATGCTGTTAATCTAGCTTTTGCGTTTGA-CTGACTGACCAAGTTTTCACCCGGTTTCACTACTAAAATCTTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAACTTGAGGCGCAATACCCTGTGGATCCTCTCCAGAATCGGATTCACCAGCTGGAGAAGGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAGCTCGAGCCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACATTCCGTCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTCGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATCGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATG--CACTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574889" ref_strand="+" ref_description="SGN-E574889 [34427]">
      <seq>agtgcatatattaaaacatcacagtattagcttgtttatcatcagaatagaagttaactaggctctactatcagtactagttaagcagaagggttaacactaacagctaaaaggatcttcagcaaagtctagcgattagtgcaggtaagttgcctgatagtggtaaccatttccgaagaagttgccatgtccgggaggaaagttgtaggcagtaccaaggaatgacggaacgtgagtgtcagctggtccagaggtaagcatatggtcggtcatatatgtactgtggatacctatcagtcattctactagcatagaagttcttgtcagaggcaacattagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6454" stop="7390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6753" g_stop="7090" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E574889" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6753" e_stop="7090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCATATATTAAAACATCACAGTATTAGC-T-TTTA-CATCAGAATAGAAGTTAACTAGGCTCTACTATCAGTACTAGTTAAGCAGAAGGGTTAACACTAACAGCTAAAAGGATCTTCAGCAAAGTCTAGCAATTAGTGCAGGTAAGTTGCCTGATAGTGATAACCATTTCCAAAGAAGTTGCCATGTCCGGGAGGGAAGTTGTAGGCAGTACCAAGGAATGGCGGAACGTGGGTGTCAGCTGGTCCAG-GGTAAGCATATGGTCGGTCATATATGTACTGTGGATACCTATCAGTCATTCTACTAGCATAGAAGTTCTTCTCAGAGGCAACACTAGTGG</genome_strand>
        <mrna_strand>AGTGCATATATTAAAACATCACAGTATTAGCTTGTTTATCATCAGAATAGAAGTTAACTAGGCTCTACTATCAGTACTAGTTAAGCAGAAGGGTTAACACTAACAGCTAAAAGGATCTTCAGCAAAGTCTAGCGATTAGTGCAGGTAAGTTGCCTGATAGTGGTAACCATTTCCGAAGAAGTTGCCATGTCCGGGAGGAAAGTTGTAGGCAGTACCAAGGAATGACGGAACGTGAGTGTCAGCTGGTCCAGAGGTAAGCATATGGTCGGTCATATATGTACTGTGGATACCTATCAGTCATTCTACTAGCATAGAAGTTCTTGTCAGAGGCAACATTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588863" ref_strand="-" ref_description="SGN-E588863 [42425]">
      <seq>cactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggacatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaataccccgtgcatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggagctcgagccactaatgttgcctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgtcattccttggtactgcctacaactttcctcccggacatggcaacttcttcggaaatggttaccactatcaggcaacttacctgcactaatcgctagactttgctgaagatccttttagctgttagtgttaacccttctgcttaactagtactgatagtagagcctagttaacttctattctgatgtaaaagctaatactgtgatgttttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8123" stop="6461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7823" g_stop="7741" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7301" g_stop="6761" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="624" r_length="541" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E588863" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588863" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7823" e_stop="7741"/>
          <exon e_start="7301" e_stop="6761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATA</genome_strand>
        <mrna_strand>CACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGACATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATACCCCGTGCATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAGCTCGAGCCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGTCATTCCTTGGTACTGCCTACAACTTTCCTCCCGGACATGGCAACTTCTTCGGAAATGGTTACCACTATCAGGCAACTTACCTGCACTAATCGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584977" ref_strand="+" ref_description="SGN-E584977 [66694]">
      <seq>tggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaggaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcttacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataaacttgaggcgcaataccctgtggatcctctccagaatcggattcaccagctggagaaggaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggagctcgagccactaatgttgcctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaacatatgcttaccctggaccagtgacacccacattccgtcattccttggtactgctacaatttcctcccggaccatggcaacttcttcggaaatggttaccactatcaggcaaacttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8625" stop="6593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8325" g_stop="8173" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="329" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="6903" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="726" r_length="397" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E584977" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8325" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="6903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGA-CATGGCAACTTCTTTGGAAATGGTTATCACTATCAG</genome_strand>
        <mrna_strand>TGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCTTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAACTTGAGGCGCAATACCCTGTGGATCCTCTCCAGAATCGGATTCACCAGCTGGAGAAGGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAGCTCGAGCCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGAACATATGCTTACCCTGGACCAG-TGACACCCACATTCCGTCATTCCTTGGTACTG-CTACAA-TTTCCTCCCGGACCATGGCAACTTCTTCGGAAATGGTTACCACTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705817" ref_strand="+" ref_description="SGN-E705817 [FA28AH08]">
      <seq>aaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatcagcaagtgttaaggaacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattctttggaggctcatgcattcttacagcttcttgctactttcggtattaactccaactttaaccaggaagacctgtacaagctgatacccatggtttcacgtcgtcgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataacgggaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacctgtttcactactaaaatcttacttgaatgaagcaaacagagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaacataaacttaaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgaccgaccatatgcttaccctggaccagctgacacccacgttccgccattccttggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8827" stop="6660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8527" g_stop="8173" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="531" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="6960" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="873" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E705817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8527" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="6960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACT</genome_strand>
        <mrna_strand>AAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601557" ref_strand="+" ref_description="SGN-E601557 [54599]">
      <seq>cacgagggtggaaacaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaggaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcttacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataaacttgaggcgcaataccctgtggatcctctccagaatcggattcaccagctggagaaggaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggagctcgagccactaatgttgcctctgacaagaacttctatgctagtagaatgactgataggtatccacagtacatatatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8683" stop="6717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8386" g_stop="8173" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="388" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7017" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="673" r_length="285" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E601557" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8386" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGAC</genome_strand>
        <mrna_strand>CACGAGG-GTGGAAA-CAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCTTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAACTTGAGGCGCAATACCCTGTGGATCCTCTCCAGAATCGGATTCACCAGCTGGAGAAGGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAGCTCGAGCCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701931" ref_strand="+" ref_description="SGN-E701931 [FA17BD05]">
      <seq>ctcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatcagcaagtgttaaggaacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattctttggaggctcatgcattcttacagcttcttgctactttcggtattaactccaactttaaccaggaagacctgtacaagctgatacccatggtttcacgtcgtcgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataacgggaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacctgtttcactactaaaatcttacttgaatgaagcaaacagagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaacataaacttaaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgtgtaggaaatggagctcgagccactagtgttgcctctgagaagaacttctatgctagtagaatgactgataggtatccacagtacatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8869" stop="6721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8569" g_stop="8173" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="573" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7021" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="854" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E701931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8569" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATA</genome_strand>
        <mrna_strand>CTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448735" ref_strand="+" ref_description="SGN-E448735 [cSTS-4-E24]">
      <seq>gtggaaaccaaagttagatgagcttgaccttgatgcaaataatgggaattccttggaggctcatgcattcttaccgcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggagctcgagccactaatgttgcctctgacaagaacttctatgctagtagaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8678" stop="6744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8378" g_stop="8173" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="382" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7044" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="640" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E448735" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8378" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACT</genome_strand>
        <mrna_strand>GTGGAAACCAAAGTTAGATGAGCTTGACCTTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACCGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAGCTCGAGCCACTAATGTTGCCTCTGACAAGAACTTCTATGCTAGTAGAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599763" ref_strand="+" ref_description="SGN-E599763 [52759]">
      <seq>gtttttacccctcagaagtatcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatctgcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaaactcaacccaagagacctcgtgccaattgcgtagaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8862" stop="6797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8562" g_stop="8173" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="566" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7097" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="770" r_length="204" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E599763" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8562" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAG</genome_strand>
        <mrna_strand>GTTTTTACCCCTCAGAAGTATCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCTGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAAACTCAACCCAAGAGACCTCGTGCCAATTGCGTA-GAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601736" ref_strand="+" ref_description="SGN-E601736 [54782]">
      <seq>gtttaatatctgcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8727" stop="6797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8427" g_stop="8173" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="431" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7097" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="636" r_length="205" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E601736" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8427" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAG</genome_strand>
        <mrna_strand>GTTTAATATCTGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602518" ref_strand="+" ref_description="SGN-E602518 [55584]">
      <seq>cttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaataccccgtggatcctctccagaaccggattcaccagctggagaaagaaaaggcagacaagaaaagagcaactgaagttgccaaacctcaacccaagagacctcgtgccaattgcgtaggaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8497" stop="6797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8197" g_stop="8173" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="201" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7097" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="406" r_length="205" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E602518" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8197" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAG</genome_strand>
        <mrna_strand>CTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGCGTAGGAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570219" ref_strand="+" ref_description="SGN-E570219 [14769]">
      <seq>ggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgccctgaaggctgtgataaagtgcatcgaagaccataagcttgaggcgcaatacccgtggatcctctccagaaccggattcaccaagtggagaaagaaaaggcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8705" stop="6867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8404" g_stop="8173" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="408" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7167" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="542" r_length="134" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E570219" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8404" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGAC</genome_strand>
        <mrna_strand>GGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCCCTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAGCTTGAGGCGCAATA-CCCGTGGATCCTCTCCAGAACCGGATTCACCAAGTGGAGAAAGAAAAGGCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568799" ref_strand="+" ref_description="SGN-E568799 [13139]">
      <seq>aaaatgctaaggcattccattagcattttattaacaacactggaattggattctgtgtcaagtttaatatcagcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgccaaatctggaaatgcaccacctactactgccacagaatgatgtcaancgagaagcagctgacttgcactgaaggctgtgataaagtgcatcgaagaacataagcttgaggcgcaatacccgtggatcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8785" stop="6907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8488" g_stop="8173" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="493" r_length="177" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7207" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="589" r_length="96" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E568799" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8488" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTG-CACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAA-CGAGAAGCAGCTGAC-TGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCT</genome_strand>
        <mrna_strand>AAAATGCTAAGGCATTCCATTAGCATTTTATTAACAACACTGGAATTGGATTCTGTGTCAAGTTTAATATCAGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGCCAAATCTGGAAATGCACCACCTACTACTGCCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAANCGAGAAGCAGCTGACTTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAGCTTGAGGCGCAATA-CCCGTGGATCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585167" ref_strand="+" ref_description="SGN-E585167 [66886]">
      <seq>gttatgccaagatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttaagaactgctgttgatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtatcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatctgcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgctttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccanctactactgcacagaatgatgtcaacgagaagcagctgactgcactgaaggctgtgataaagtgcatcgaagaccataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9004" stop="6937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8705" g_stop="8173" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="710" r_length="177" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7236" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="776" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E585167" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8705" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTG-TTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAA</genome_strand>
        <mrna_strand>GTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTAAGAACTGCTGTTGATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTATCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCTGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGCTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCANCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGACCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438582" ref_strand="+" ref_description="SGN-E438582 [cSTA-8-D16]">
      <seq>ggaatgccttagcattttattaacaacactggaattagattctgtttcaagtttaatttctgcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaggaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcttacttgaatgaagcaagcaaagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8777" stop="6970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8477" g_stop="8173" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="481" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7270" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="513" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E438582" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8477" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTGCACT</genome_strand>
        <mrna_strand>GGAATGCCTTAGCATTTTATTAACAACACTGGAATTAGATTCTGTTTCAAGTTTAATTTCTGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCTTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702056" ref_strand="+" ref_description="SGN-E702056 [FA17CG03]">
      <seq>tgctggtgctacttctgaggtgcaaggtgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaacggtgttgtggaagtcagaggttatccagatttagtcaaattatgccaatatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttgagaactgctgttcatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatcagcaagtgttaaggaacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattctttggaggctcatgcattcttacagcttcttgctactttcggtattaactccaactttaaccaggaagacctgtacaagctgatacccatggtttcacgtcgtcgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataacgggaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacctgtttcactactaaaatcttacttgaatgaagcaaacagagtatcttcacctgtcaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagcagctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9152" stop="6974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8852" g_stop="8173" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="856" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7274" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="884" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E702056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8852" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCAGCTGACTG</genome_strand>
        <mrna_strand>TGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCAGCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446105" ref_strand="+" ref_description="SGN-E446105 [cSTA-20-A11]">
      <seq>ggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggtttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgccaggtgttattgacgtgttggttaataatggaaggcatatagatgctgttaatctagcttttgcgtttgagctgactgacaagttttcacccgtttcactactaaaatcgtacttgaatgaagcaagcaaagtatcttcacctgccaaatctggaaatgcaccacctactactgcacagaatgatgtcaacgagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8621" stop="6982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8321" g_stop="8173" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7741" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="325" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7301" g_stop="7282" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="345" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E446105" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8321" e_stop="8173"/>
          <exon e_start="7916" e_stop="7741"/>
          <exon e_start="7301" e_stop="7282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAGGTTTGTACTCTGTGCCTTGGCATATTTTGAAATTCACTATTTTGTCTGAATGAGTAAGGTGAGCCTTGGAGCAAGGGTATCCGTGTGACCTATAGGGTTTGAGCTGTGGAAGCAGCCACTAATGCTTGCACTGCATTAGTGTAGCTGTCTTCATCTTACCCCTTGGAGTGCGGTCCTTCCCAGGACCTGCTAACATGTATGCTTTGTGCACTGGACTGCTTTTTTCTTTTGTCCATATTGCTTTGCACAAGTTCTCACTGTAATATCATGGTCCGTGTCCAAGAATCGGTTTCCTCTCTAGTTCACTTGGGTTGGGAGAACAAGTGCTGCTTATGCAGTCGATGCTCTTTTGCTAATTATTGCGTCACCTAAATGAGAATTTTCTTTTCTAAAGCAACTTTTTATGTGCCACCAATCAAGTATTTCGTCTTTGTTTCAGAATGATGTCAACGAGAAGCA</genome_strand>
        <mrna_strand>GGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG................................................................................................................................................................................................................................................................GTGTTATTGACGTGTTGGTTAATAATGGAAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCCGTTTCACTACTAAAATCGTACTTGAATGAAGCAAGCAAAGTATCTTCACCTGCCAAATCTGGAAATGCACCACCTACTACTGCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGTCAACGAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314693" ref_strand="+" ref_description="SGN-E314693 [cTOA-20-A19]">
      <seq>aaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaacggtgttgtggaagtcagaggttatccagatttagtcaaattatgccaatatatggactcggaaggcctcctcaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttgagaactgctgttcatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacgctggaattggattctgtttcaagtttaatatcagcaagtgttaaggaacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattctttggaggctcatgcattcttacagcttcttgctactttcggtattaactcccaactttaccaggaagacctgtacaagctgatacccatggtttcacgtcgtcgccaaacagcagatctctgtcgttcccttggattgtctgagagaatgcccaggtgtattgacgtngtgggttataaacggaggcatatagatgctgntaatctagcttttgcgtttgagctgactgancagttttcactgtttcactactaaaatcttacttgaatgaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9104" stop="7494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8804" g_stop="8173" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7916" g_stop="7794" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="754" r_length="121" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E314693" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8804" e_stop="8173"/>
          <exon e_start="7916" e_stop="7794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACT-CCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATG-CCAGGTTAGTTTTTGGAAATACTTAGAGTACATGGCTAGAGATTTTTATATGCTTATATTTTCGATGGAATGCATGTCTCTTGACAGAATTTAAATTCATAACTATGTTCCTCTCCCTGTTCATATTTTCAAGAATATAGCTTTACATAAGTGGAACAGTATTCCCCATCATCTATTGATATCGGTCTAGGAGGTCAAGACGGCTCATATGCTTCCGATTTCTTAACATTCGTATGGTTTCTACTTTTGCATTTCTACAGGTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAA</genome_strand>
        <mrna_strand>AAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCTCAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACGCTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCCAACTTT-ACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCCAG................................................................................................................................................................................................................................................................GTG-TATTGACGTNGTGGGTTATAAACGGAGGCATATAGATGCTGNTAATCTAGCTTTTGCGTTTGAGCTGACTGANCAGTTTTCA-CTGTTTCACTACTAAAATCTTACTTGAATGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483191" ref_strand="+" ref_description="SGN-E483191 [cSTE-8-G6]">
      <seq>gtgccaaggtgagtcgtctacgtttgatgcaaagccccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaaatggtgttatggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttaagaactgctgttgatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtatcaatttcagatgctaaaaaagacgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatcagcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacagcttcttgctacttttggtattaactccaactttaaccaagaagacctgtacaagctgatacccatggttttcacgtcgccgccaaacagcagatctctgtcgttcccttggattgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9133" stop="7885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8833" g_stop="8185" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E483191" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8833" e_stop="8185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTG-CAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAG-AACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGG-TTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTG</genome_strand>
        <mrna_strand>GTGCCAAGGTGAGTCGTCTACGTTTGATGCAAAGCCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAAATGGTGTTATGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTAAGAACTGCTGTTGATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTATCAATTTCAGATGCTAAAAAAGACGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTTGGTATTAACTCCAACTTTAACCAAGAAGACCTGTACAAGCTGATACCCATGGTTTTCACGTCGCCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557992" ref_strand="+" ref_description="SGN-E557992 [16878]">
      <seq>gagatgctgcagtttctgccattactattgctatggagaagcatacaaagtctaattgcatggaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttnattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttaagaactgctgttgatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtatcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctgtttcaagtttaatatctgcaagtgttaagggacgggcaaaagctattgctgaggagtggaaaccaaagttagatgagcttgacattgatgcaaataatgggaattccttggaggctcatgcattcttacaggttcttgctacttttggtattactccaagtttaaccaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9219" stop="7961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8919" g_stop="8261" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E557992" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8919" e_stop="8261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAA</genome_strand>
        <mrna_strand>GAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACAAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTNATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTAAGAACTGCTGTTGATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTATCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCTGCAAGTGTTAAGGGACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCCTTGGAGGCTCATGCATTCTTACAGGTTCTTGCTACTTTTGGTATT-ACTCCAAGTTTAACCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728609" ref_strand="+" ref_description="SGN-E728609 [LA18BE02]">
      <seq>cccttcaaaccataaaaccctcgccaccagaaaatggcctaattcctccggcgaaattcgccgccgacacttcattttccgcctccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcggcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaacggtgttgtggaagtcagaggttatccagatttagtcaaattatgccaatatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttgagaactgctgttcatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgcccttagcatttattaacaacactggaattggattctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12354" stop="8133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12054" g_stop="11963" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8433" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="891" r_length="799" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E728609" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12054" e_stop="11963"/>
          <exon e_start="9231" e_stop="8433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATG-CCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGT</genome_strand>
        <mrna_strand>CCCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTCCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCCTTAGCA-TTTATTAACAACACTGGAATTGGATTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719387" ref_strand="+" ref_description="SGN-E719387 [FC07CH02]">
      <seq>tagggcgattggcggcaaatcggccgaattgctccggcgaaattcccctaaaagacttcattttccgcctccgatctcgaatttttcccttgaaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcggcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaacggtgttgtggaagtcagaggttatccagatttagtcaaattatgccaatatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttgagaactgctgttcatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgctaatggaatgccttagcattttattaacaacactggaattggattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12288" stop="8134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12024" g_stop="11963" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="78" r_length="62" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8434" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="876" r_length="798" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E719387" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12024" e_stop="11963"/>
          <exon e_start="9231" e_stop="8434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTG</genome_strand>
        <mrna_strand>AAATCGGCCGAATTGCTCCGGCGAAATTCCCCTAAAAGACTTCATTTTCCGCCTCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTCCCTTGAAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333130" ref_strand="+" ref_description="SGN-E333130 [cTOD-19-P13]">
      <seq>tgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaatggtgttgtggaagtcagaggttatccagatttagtcaaattatgccaatatatggactcggaaggcctcctcaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttgagaactgctgttcatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttttaggtcttcgccgaacttgtattatgcntatggaaatgcttagcattttattaacaacgctggaattggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9125" stop="8135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8825" g_stop="8435" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E333130" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8825" e_stop="8435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCT</genome_strand>
        <mrna_strand>TGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCTCAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCNTATGGAAATGCTTAGCATTTTATTAACAACGCTGGAATTGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259015" ref_strand="+" ref_description="SGN-E259015 [cLEG-41-E21]">
      <seq>gagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaacggtgttgtggaagtcagaggttatccagatttagtcaaattatgccaatatatggactcggaaggcctcctcaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgctttgagaactgctgttcatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtgtcaatttcagatgctaaaaaagatgcaaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9283" stop="8209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8983" g_stop="8509" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E259015" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8983" e_stop="8509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTT</genome_strand>
        <mrna_strand>GAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCTCAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568889" ref_strand="+" ref_description="SGN-E568889 [13243]">
      <seq>agctgctgttatctctagtgagaaagcttcacttgagagcctcccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatgggaacctgctggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttgattacataccacttgagaatacagaggatactatgaagcctttcaagcaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaagggcaggaaattccatctgctttaagaactgctgttgatcctgcctgtttggtgctggactcactcaagggtttttacccctcagaagtatcaatttcagatgctaaaaaagacgcaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9272" stop="8210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8972" g_stop="8510" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E568889" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8972" e_stop="8510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCT-CCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCAT-GGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAG-AACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGG-AGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTT</genome_strand>
        <mrna_strand>AGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGGAACCTGCTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGCAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGCAGGAAATTCCATCTGCTTTAAGAACTGCTGTTGATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTATCAATTTCAGATGCTAAAAAAGACGCAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578826" ref_strand="+" ref_description="SGN-E578826 [85948]">
      <seq>ttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagttggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgctgtaaggggaggaaattccatctgctttaagaactgctgttgatcctgcctgtttggtgctgggacctcactcaaggggttttaacccctcagaagtatcaatttccagatgctaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12351" stop="8220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12051" g_stop="11963" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8520" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="805" r_length="716" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E578826" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12051" e_stop="11963"/>
          <exon e_start="9231" e_stop="8520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAA-GGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCT-GGA-CTCACTCAA-GGGTTTTTACCCCTCAGAAGTGTCAATTT-CAGATGCTAAAAAAGA</genome_strand>
        <mrna_strand>TTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGTTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGGAGGAAATTCCATCTGCTTTAAGAACTGCTGTTGATCCTGCCTGTTTGGTGCTGGGACCTCACTCAAGGGGTTTTAACCCCTCAGAAGTATCAATTTCCAGATGCTAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588421" ref_strand="+" ref_description="SGN-E588421 [41973]">
      <seq>tanaacctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagttggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctgacaaccgcaagaacctggctgcttgtaagggaggaaattccatctgcttttaagaactgctgttgaatcctgcctgtttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="8278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12042" g_stop="11963" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8578" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="735" r_length="656" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E588421" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12042" e_stop="11963"/>
          <exon e_start="9231" e_stop="8578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGC-TGTAAGGGAGGAAATTCCATCTGC-TTTGAGAACTGCTGTT-CATCCTGCCTGTTTGGTGC</genome_strand>
        <mrna_strand>TANAA-CCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-TTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGTTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTTGTAAGGGAGGAAATTCCATCTGCTTTTAAGAACTGCTGTTGAATCCTGCCTGTTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487739" ref_strand="+" ref_description="SGN-E487739 [cSTE-26-O10]">
      <seq>cgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagttggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctgacnaccgcaagaacctggctgctgtaangggaggaaattcatctgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12333" stop="8310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12033" g_stop="11963" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8609" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="693" r_length="622" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E487739" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12033" e_stop="11963"/>
          <exon e_start="9231" e_stop="8609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAA-GGGAGGAAATTCCATCTGCTTTG</genome_strand>
        <mrna_strand>CGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGTTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACNACCGCAAGAACCTGGCTGCTGTAANGGGAGGAAATT-CATCTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479488" ref_strand="+" ref_description="SGN-E479488 [cSTD-10-K15]">
      <seq>tagaatagcagtcaaccttctatctcttacctttcctcttttgttccttctctcttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagaagcactttcatgggcttgagaagtctttgaagaagcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggactggccctggtgctactcctgaggtgcaagggtgagtcgtctatgtttgatgcaaagccccttgattacataccacttgagaatacagaggatactatgaagcctttcagaaatggtgttatggaaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctncacaaatttatatctgacaaccgcaagaacctggctgctgtaagggaggaaattccatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12404" stop="8312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12104" g_stop="11963" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8612" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="767" r_length="623" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E479488" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12104" e_stop="11963"/>
          <exon e_start="9231" e_stop="8612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATAGCAGTCAACATTCTATCACTTA-CTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCG-AAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAG-AGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGA-ACCTGCTGGTGCTACTTCTGAGGTGCAA-GGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGG-AAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCT</genome_strand>
        <mrna_strand>TAGAATAGCAGTCAACCTTCTATCTCTTACCTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAAGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGACTGGCCCTGGTGCTACTCCTGAGGTGCAAGGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAGAAATGGTGTTATGGAAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTNCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583116" ref_strand="+" ref_description="SGN-E583116 [8749]">
      <seq>catttgctgagttggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttggattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcgcgaaggcctcccacaaatttatatctgacaaccgcaaggaaacctggctgctgtaaaggggagggaaaattccattctgctttaaaagaacctgctgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9450" stop="8305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9150" g_stop="8636" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E583116" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9150" e_stop="8636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTT-GATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCG-GAAGGCCT-CCACAAATTTATATCTGACAACCGCAA-G-AACCTGGCTGCT</genome_strand>
        <mrna_strand>CATTTGCTGAGTTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGCGAAGGCCTCCCACAAATTTATATCTGACAACCGCAAGGAAACCTGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583114" ref_strand="+" ref_description="SGN-E583114 [8747]">
      <seq>tctggctgttgaagacttgcatgttccccaaaggatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttggattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttatggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcggaaggcctccacaaatttatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10599" stop="8359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10299" g_stop="10267" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10266" i_stop="9232" i_length="1035">
            <donor d_prob="0.921" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8659" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="606" r_length="573" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E583114" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10299" e_stop="10267"/>
          <exon e_start="9231" e_stop="8659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTT-GATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTG</genome_strand>
        <mrna_strand>TCTGGCTGTTGAAGACTTGCATGTTCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTATGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGAAGGCCTCCACAAATTTATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558097" ref_strand="+" ref_description="SGN-E558097 [16999]">
      <seq>ctcttcaaaccatagaaccctcgccaccagaaaatggtctaatttctccggcgaaattcgccgccgacacttcattttccgctgcggatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacaaagtctaattgcatggaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12354" stop="8382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12054" g_stop="11963" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8682" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="641" r_length="549" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E558097" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12054" e_stop="11963"/>
          <exon e_start="9231" e_stop="8682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGA</genome_strand>
        <mrna_strand>CTCTTCAAACCATAGAACCCTCGCCACCAGAAAATGGTCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCTGCGGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACAAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439062" ref_strand="+" ref_description="SGN-E439062 [cSTA-10-D10]">
      <seq>cagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagttggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaatggtgttgtggaagtcaagtgttatccagatttagttaagttatgccaagatatggactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12327" stop="8384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12027" g_stop="11963" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8684" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="612" r_length="547" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E439062" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12027" e_stop="11963"/>
          <exon e_start="9231" e_stop="8684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCG</genome_strand>
        <mrna_strand>CAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGTTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATGGTGTTGTGGAAGTCAAGTGTTATCCAGATTTAGTTAAGTTATGCCAAGATATGGACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724937" ref_strand="+" ref_description="SGN-E724937 [FC25CD06]">
      <seq>attttccgcctccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcggcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaatacagaggattatatgaagcctttcaagaacggtgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12281" stop="8436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9250" g_stop="8736" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E724937" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9250" e_stop="8736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGT</genome_strand>
        <mrna_strand>ATTTTCCGCCTCCGATCTCGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450182" ref_strand="+" ref_description="SGN-E450182 [cSTS-8-L1]">
      <seq>aaccatagaaccctcgccaccagaaaatggtctaatttctccggcgaaattcgccgccgacacttcattttccgctgcggatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacaaagtctaattgcatggaaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttgattacataccacttgagaatacagaggatactatgaagcctttcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12347" stop="8443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12047" g_stop="11963" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8743" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="574" r_length="489" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E450182" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12047" e_stop="11963"/>
          <exon e_start="9231" e_stop="8743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGG-AACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACG</genome_strand>
        <mrna_strand>AACCATAGAACCCTCGCCACCAGAAAATGGTCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCTGCGGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACAAAGTCTAATTGCATGGAAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438315" ref_strand="+" ref_description="SGN-E438315 [cSTA-7-M4]">
      <seq>gaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagttggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaaccttttggtgctactcctgaggtgcgaggtgagtcgcctatgtttgatgcaaagtcccttgattacataccacttgagaatacagaggatactatgaagccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12325" stop="8451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12025" g_stop="11963" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8751" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="543" r_length="480" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E438315" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12025" e_stop="11963"/>
          <exon e_start="9231" e_stop="8751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTT</genome_strand>
        <mrna_strand>GAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGTTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTTTTGGTGCTACTCCTGAGGTGCGAGGTGAGTCGCCTATGTTTGATGCAAAGTCCCTTGATTACATACCACTTGAGAATACAGAGGATACTATGAAGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247908" ref_strand="+" ref_description="SGN-E247908 [cLEF-47-J11]">
      <seq>cgaatgtttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgatgtggaagcaactcgaacagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagataaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagagagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactatagctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtctatgattgatgcaaagcctcttgattacataccacttgaaaatacagaggattatatgaagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9531" stop="8452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9231" g_stop="8752" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="481" r_length="480" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E247908" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9231" e_stop="8752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTT</genome_strand>
        <mrna_strand>GAATGTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGATGTGGAAGCAACTCGAACAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGATAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGAGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATAGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGATTGATGCAAAGCCTCTTGATTACATACCACTTGAAAATACAGAGGATTATATGAAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444526" ref_strand="+" ref_description="SGN-E444526 [cSTA-43-A14]">
      <seq>cgtagaatatcagtcaacattctatctcttactttcctcttttgttccttctctcttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttgattacataccacttgagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12406" stop="8473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12106" g_stop="11963" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="602" r_length="458" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E444526" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12106" e_stop="11963"/>
          <exon e_start="9231" e_stop="8773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAAATAGCAGTCAACATTCTATCACTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATA</genome_strand>
        <mrna_strand>CGTAGAATATCAGTCAACATTCTATCTCTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGATTACATACCACTTGAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306715" ref_strand="+" ref_description="SGN-E306715 [cLEY-19-E20]">
      <seq>aacattctatcacttactttcctggtttgttccttctctcttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacgcttcattttccgccgccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtctatgtttgatgcaaagcctcttgattacataccacttgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12391" stop="8475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12091" g_stop="11963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8775" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="586" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E306715" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12091" e_stop="11963"/>
          <exon e_start="9231" e_stop="8775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCTATCACTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAA</genome_strand>
        <mrna_strand>AACATTCTATCACTTACTTTCCTGGTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACGCTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483370" ref_strand="+" ref_description="SGN-E483370 [cSTE-9-I5]">
      <seq>agccgtcgtagaatagcagtcaacattctatctcttactttcctctttttgttccttctctcttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacaccttcattttccgccgccgatctcgatttttaccatggaagacacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaagcgcttcaccgaactggaagaaccaaaaaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagctacgaagtctaattgcatggactggcctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttgattacataccacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12412" stop="8479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12112" g_stop="11963" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8779" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="603" r_length="451" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E483370" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12112" e_stop="11963"/>
          <exon e_start="9231" e_stop="8779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTCGTAAAATAGCAGTCAACATTCTATCACTTACTTTCCTC-TTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACA-CTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTG</genome_strand>
        <mrna_strand>AGCCGTCGTAGAATAGCAGTCAACATTCTATCTCTTACTTTCCTCTTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACCTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGACACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAAGCGCTTCACCGAACTGGAAGAACCAAAAAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGC-TACGAAGTCTAATTGCATGGACTGGCCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGATTACATACCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445879" ref_strand="+" ref_description="SGN-E445879 [cSTA-19-K7]">
      <seq>ccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgcaaagccccttgattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12345" stop="8486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12045" g_stop="11963" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8786" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="528" r_length="445" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E445879" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12045" e_stop="11963"/>
          <exon e_start="9231" e_stop="8786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATA</genome_strand>
        <mrna_strand>CCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCCCTTGATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443029" ref_strand="+" ref_description="SGN-E443029 [cSTA-35-P4]">
      <seq>tctatctcttactttcctcttttgttccttctctcttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgtgtagtgtttgctaggtttctttttttctggctgttgaagacttgcatgttccccaaaggatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaaccttgtggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12386" stop="8505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12086" g_stop="11963" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="10327" i_length="1636">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.664" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10326" g_stop="10267" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="184" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10266" i_stop="9232" i_length="1035">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9231" g_stop="8805" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="610" r_length="426" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E443029" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12086" e_stop="11963"/>
          <exon e_start="10326" e_stop="10267"/>
          <exon e_start="9231" e_stop="8805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCACTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGC</genome_strand>
        <mrna_strand>TCTATCTCTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGGCTGTTGAAGACTTGCATGTTCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTTGTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470000" ref_strand="+" ref_description="SGN-E470000 [cSTB-16-M5]">
      <seq>aaaaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacacttcattttccgccgccgatctcgatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagataccagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacacctaaacctgaaatggaagcaacttgaagagccctttcatgggcttgagaagtctttgaagaggcgccttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctgaggtgcaaggtgagtcgtctatgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12343" stop="8506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12043" g_stop="11963" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8806" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="509" r_length="428" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E470000" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12043" e_stop="11963"/>
          <exon e_start="9231" e_stop="8806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATA-CAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACA-CTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCG-CTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATG</genome_strand>
        <mrna_strand>AAAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACCAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACCTAAACCTGAAATGGAAGCAACTTGAAGAGCCCTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324264" ref_strand="+" ref_description="SGN-E324264 [cTOC-4-I6]">
      <seq>aaaatggcctggtttctccggcgaaattcgccgccgacgcttcattttccgccgccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaacctgctggtgctacttctgaggtgcaaggtgagtcgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12324" stop="8515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12024" g_stop="11963" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8815" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="479" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E324264" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12024" e_stop="11963"/>
          <exon e_start="9231" e_stop="8815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTA</genome_strand>
        <mrna_strand>AAAATGGCCTGGTTTCTCCGGCGAAATTCGCCGCCGACGCTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483015" ref_strand="+" ref_description="SGN-E483015 [cSTE-6-L6]">
      <seq>aaattcgccgccgacacttcattttccgccgccgatctcgtgtagtgtttgctaggtttctttttttctggctgttgaagacttgcatgttccccaaaggatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctacagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaaatggaagcaacttgaagagcactttcatgggcttgagaagtctttgaagaggcgcttcaccgaactggaagaccaagagaaggagtttgaaacaaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctcttgtgagaaagcttcacttgagagcctccaagagaaaagagatgctgcagtttctgccattactattgctatggagaagcatacgaagtctaattgcatggaacctgctggtgctactcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12301" stop="8536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12001" g_stop="11963" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="10327" i_length="1636">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.664" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10326" g_stop="10267" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10266" i_stop="9232" i_length="1035">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9231" g_stop="8836" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="494" r_length="395" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E483015" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12001" e_stop="11963"/>
          <exon e_start="10326" e_stop="10267"/>
          <exon e_start="9231" e_stop="8836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTG</genome_strand>
        <mrna_strand>AAATTCGCCGCCGACACTTCATTTTCCGCCGCCGATCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGGCTGTTGAAGACTTGCATGTTCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTACAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAATGGAAGCAACTTGAAGAGCACTTTCATGGGCTTGAGAAGTCTTTGAAGAGGCGCTTCACCGAACTGGAAGACCAAGAGAAGGAGTTTGAAACAAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTTGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCAGTTTCTGCCATTACTATTGCTATGGAGAAGCATACGAAGTCTAATTGCATGGAACCTGCTGGTGCTACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338673" ref_strand="+" ref_description="SGN-E338673 [cTOE-15-H12]">
      <seq>gcctaatttctccggcgaaattcgccgccgacgcttcattttccgccgccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttcatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12318" stop="8555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12018" g_stop="11963" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8855" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="433" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E338673" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12018" e_stop="11963"/>
          <exon e_start="9231" e_stop="8855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAA</genome_strand>
        <mrna_strand>GCCTAATTTCTCCGGCGAAATTCGCCGCCGACGCTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306609" ref_strand="+" ref_description="SGN-E306609 [cLEY-19-E19]">
      <seq>acttactttcctcttttgtggcttctgttttcaaaccataaaaccctccccaccagaaaatggcctaatttctccggcgaaattcgccgccgacgcttcattttccgccgccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactattgctatggagaagcatatgaagtctaatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12380" stop="8560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12080" g_stop="11963" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8860" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="490" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E306609" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12080" e_stop="11963"/>
          <exon e_start="9231" e_stop="8860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCA</genome_strand>
        <mrna_strand>ACTTACTTTCCTCTTTTGTGGCTTCTGTTTTCAAACCATAAAACCCTCCCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACGCTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324265" ref_strand="+" ref_description="SGN-E324265 [cTOC-4-I8]">
      <seq>tctcttcaaaccataaaaccctcgccaccagaaaatggcctaatttctccggcgaaattcgccgccgacgcttcattttccgccgccgatctcgaatttttaccatggaagatacacaatcagttgcaacactgatggactccacaacctctaagatacagcagctgcagaaagcatttgctgagctggaaagtcatcgtgctgttacactaaacctgaagtggaagcaactcgaagagcactttcatgggcttgagaagtccttgaagaggcgcttcaccgaattggaagaccaagagaaagagtttgaaacgaaaatagttcaatctaaaaagatattggagaatcgtcaagctgctgttatctctagtgagaaagcttcacttgagagcctccaagagaaaagagatgctgccgtttctgccattactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12355" stop="8591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12055" g_stop="11963" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9231" g_stop="8891" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="434" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E324265" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12055" e_stop="11963"/>
          <exon e_start="9231" e_stop="8891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTCGTAAGCTCTTACATCTCAACATCTATTTTCATTTGCGTTCTTTTTTTAGGTCACTCAGTAGCTTCAGATCAAGTATTTGCTCGTTAACACATTTACCCCCTTTTTTGCTGTAATTTACAAAATTTGTGAAATTTGGAGCTCAATTAGCTAGTGTAGTAGCTTTTTACATGTTAATTTTGAAGTTTTGTTGTTTGTTAGCTTAATTCTGTTTGCGATCTGAATATCTATGTTTGCCGTTTACTTGGGTCGTGGAGATATTAGAGTGAGATATCTTACTGGTGTGTAAGGCTATTGTTAGCTCTGTGTGATTTAGTAATTTTCATTGTGCTTCATGTTAATTTTATTTTTTTTTGTAATAATTTTATTTTTTGAAATTTTTAACTTCTGTGTTTTCTTTGTTTGTTAACATTTTGTTTTGGTTGAAGATTTGCATGTTAATGTGGGATAAACTATGAGTTTAGCTCCGTTCTCCAGTGTTACACTCCCTGCTTTCACTTTTACTTGTCCGCGATTACAAAACTAGATTTTTGTGTTTTCCTTGTTTGTTTTTCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCATTTTCCAGTGTTACACTCCCTAGTTTCTCGGTTACTTGTTTACAAAACTAAATTTTGGTGTTTTCCTTGCTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATGGGTTTTAGCTCCGTTCACCAGTGTTAACGCCCCCTACTACTCATCCACGATTACAAAACGGGATTTTTGTGTTTTCCTCGTTTGTTTATCTTTTGTTTTGGTTGAAGACTTGCATGTTATTGTGGGATAAAATTTGAGTTTTAGCTCCGTTTTCCTGTGTTACACTCCCTAGTTTCTCGTTTACTTTTACAAAACTAGACTTTTGTGTTTTCCTTGTTTGTTAATCTTTTGTTTTGGTTGAAGACTTGCATGTGGGACGAAGTATTAGTTTTTGCTCCGTTCGCCAGTGTTATCGTTCCCTACTTTCTCTTTTACTTGTTCACTATTACAAAACTGGATTTTTGTGTTTTACTTGTCAGTTTTAACTTTTCAAGGTAAGAGGATTATTTTTCTTTCATGTTTTAGCCTCAGTATTAGTTACTTCTTTCCTAAACCAGTTTGTAAGACCTAATACTAACCATCAATTAATAGGGTATTAATATGTTTCTTTAGGTCTAACGGATGTGCAAAATCCAAAGTGGAAAAGTAAAAGTGAACGGAGGAAGTAACTTCTTACGTGTTCATTTGATTCGTTATTATTTTTCAAATTTAGTCTTTTGTTGGCTATCAGAGTATTTTTTTTTTGGGCGGTTACTTAGGTGCAGGAGCTATTAGAGTGCGATATTGTGTTTTGGTCCTGTTGTTAAATAATTTATGTTGACTTCTTGCATTTTGCTTTTTTATAATCTTTTTCTTTGTTAGTATTGAAGTGTTTTTTCTTTGGTTATATTTATTTTTAGGTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAGGTAGGTATTAACGTAAGGTTTGTGTACATCCTACCCTACCCATATCCCACTTTTGGGATTACAATGGGTATGATATTGTTGTTATTGTTGTTGTTGTTTGGTTGAAGACTTGCATCTTAGTTTAAGATAAACATGAGTTTTAGCTTACTTATAGTTAAGGGAAATACCTAATATTGCCTCACAAGAGGAACTAGAGAATTCATGTGGTCGATGCTAACTAGTTTTGGATTTCAGGTTAAGTTGATTGATCGATTGATGATTTTATTTACAAATCTTAAATTCTGAGTTTCTTGGTTTAGTTTTCATGAGTGAACTTGATTTGGCACATTAAGAGCGTATTTTGAACTTGTCGTCGTCATGCAAGGTTATTCATGAGAATTGAAGAGTAGTAGGTACTTTAGGCTGTTATGGATATTTTCTTTCCTTTTCTCTATCTGCATGTATTATGAGGTGTGTTCCTGTTGATGTGTTGGTTATAAGCAAATCTTACCTTATTTCTAACAATGATGCTGTTGAAAAGGTTATTCATGAGAATTAGAGAGTAGTATGTACTTTATCAGAAGGCTATTTTGGATATTTTCTTTCCTTTTCTCTCTCTGCGTGTATTATGAGGTGTATTCCTGTTGGAGTGTTGGATCTTGCCTTATTTCTAACAGTAATGCTGTTGAAGAAGTGTAGTAGATAGTAGATACTTTATCATCCATTGGTCTTGATGAAAAAGTGGAGTTCAGTTAAGGAGCATCTGTGACCAACTCTGAAATACTAAAATCCGAAAAGAGATAGGATAAGGAGGGATGGTTCCGATATATTAGAACATTAAAATTGTGTTAACCTCAAATCTTAGTTAGATTTATCTTTTGACTTTTTATAGGCAGCTATGGGTTTGTATAGTGATCTCTTTCAATAATTTGTCTAGATATTAGACTCCGTAATGTAAATGTTTTCAAATTAAAAATAAAGAAATTGGAGTTCTTTTAGTTAACAATATTGAGAACTTGCTGTTATTTCTTGTGTTTCATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATT</genome_strand>
        <mrna_strand>TCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACGCTTCATTTTCCGCCGCCGATCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGTCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476392" ref_strand="+" ref_description="SGN-E476392 [cSTB-44-J19]">
      <seq>aaaaaaatgaacttagctcacaacaaaattcattgtttggtaataccatttccaacacaaggccacataaatccaatgcttcaattctccaaaagattacaacacaaaggcatagaaatcacacttgttcctaccattcacatattcaacaaaagcatgcaagaattgacaagttccatcacaattgagccaatttctgatggatatgatgatgtgaatggacttttttgtgctaagtccattgaaacctacttagaaagttatcaaaaagttggatcacaagatatcattcaactcattgaaaagttgaaaaacaaaggaaatcctataaattgtgtcatttatgactcattcatgccttggattcttgatgttgcaaaaatgtttggactagtaagttgtgttttcttcactatgtcatgtgctgttgaaaacattttttatcatatccaactaaaggaactaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19955" stop="21022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20254" g_stop="20722" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E476392" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20254" e_stop="20722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATGAACTTAGCTCACAACAAAATCCATTGTTTGGTAATACCATTTCCAACACAAGGCCACATAAATCCAATGCTTCAATTCTCCAAAAGATTACAACACAAAGGCATAGAGATCACACTTGTTCCTACTATTTACATATTCAACAAAAGCATGCAAGAATTGACAAGTTCCATCACAATTGAGCCAATTTCTGATGGATATGATGATGTGAATGGACTTTTTTGTGCTAAATCCATTGAAACCTACTTAGAAAGTCATCAAATAGTTGGATCACAAGCTCTTATTCAACTCATTGAAAAGTTGAAAAACAAAGGAAATCCTATAAATTGTGTCATTTATGATTCATTCATGCCTTGGATTCTTGATGTTGCAAAAATGTTTGGACTTGTAAGTGGTGTTTTCTTCACTATGTCATGTGCTGTTGAAAATATTTTTTATCATATCCAACTAAAGGAACTAAAGC</genome_strand>
        <mrna_strand>AAAAAAATGAACTTAGCTCACAACAAAATTCATTGTTTGGTAATACCATTTCCAACACAAGGCCACATAAATCCAATGCTTCAATTCTCCAAAAGATTACAACACAAAGGCATAGAAATCACACTTGTTCCTACCATTCACATATTCAACAAAAGCATGCAAGAATTGACAAGTTCCATCACAATTGAGCCAATTTCTGATGGATATGATGATGTGAATGGACTTTTTTGTGCTAAGTCCATTGAAACCTACTTAGAAAGTTATCAAAAAGTTGGATCACAAGATATCATTCAACTCATTGAAAAGTTGAAAAACAAAGGAAATCCTATAAATTGTGTCATTTATGACTCATTCATGCCTTGGATTCTTGATGTTGCAAAAATGTTTGGACTAGTAAGTTGTGTTTTCTTCACTATGTCATGTGCTGTTGAAAACATTTTTTATCATATCCAACTAAAGGAACTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240346" ref_strand="-" ref_description="SGN-E240346 [cLED-25-E20]">
      <seq>tcatgattctggtgctgacctttcaaagaaacatcatgaaaagagaaaanagcatgagggcaaggaggatcttaatgatgttaacaaacacaagagaaacaagcacacgagctaaaagattgatgaaattggggcagtaaaggttacatgctgaaatgtcacatgtgctgctataatttactgttctcatgtgctgctataatttactgttctcatgtgctgcagttaagaatttggaggaatccttttcttattgtaaaatatctaagaatagcttctggacaaactaaagaatggcaagagggtgaatgcagctgttgaaactagattttagtgaaatgtacatagtgctgaaaaacaacctcattgtattatactatataagagcttgtttgacattgtttattttcataagcactttcttttttggtaaactaaagtttttatttaccaaatggataatgtacagcttaagaaaagggaacaaaaacaaaactctagctgggaaggacttattgctcctatatgcatgtgtaatatagagtaactattataaatagtatttcaactacctttatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26725" stop="23396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26425" g_stop="26383" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26382" i_stop="24873" i_length="1510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24872" g_stop="24813" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="103" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24812" i_stop="24675" i_length="138">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24674" g_stop="24509" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="269" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24508" i_stop="24010" i_length="499">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24009" g_stop="23690" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="589" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E240346" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240346" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26425" e_stop="26383"/>
          <exon e_start="24872" e_stop="24813"/>
          <exon e_start="24674" e_stop="24509"/>
          <exon e_start="24009" e_stop="23690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGATTCTGGTGCTGACCTTTCAAAGAAACATCATGAAAAGGTCTGCTACTAGCAAATGTTAATAAAATTATTAACCTTATCAAAAAAAAAAAAAAAGACTAGCAAATTTAAGAGTTATGCAAATCTGGTGATTCTCCTGTCATGCCATATACTGTGAATATCATGTGGTTGTTCCATATTTAAGAAGTTTAGAAGACTGGTTCACAGTAAAGACACTTAATAATTGGCCCAATGGTGTCTTTACTGAAAATGGCATTACTTCGTTACTGACAGAAATATTTTTTATAGTTCCACTTAGAATCTTGCTATCCGTTTCTCTTGCTTCCGTGCACTTTCACTACATTGCTTGTGATGTAGCTTATAAGTTGCATTTATAGGATTTTAGTAGAATAGAGTTCAGGATAAAAAGGTTTAATTTTAGGAAATATCTAGCTCAAGAGTTTGTTGAATTAATCGTTGCTTGACTTTCAGTTTTTAGTCACTGCATCAAAAGATAGCCATTTGACTTAGTTTAATTAGGTATCCAATACATTTTTTTTTGACATTAGTAACATTGTATTTCAGTCAGTACTTGGGTAGTACTGAAAAACCATATTTACAAAAATAAGAAAAAGAATAAAGTCCTTCCAATGCTAAACCAGGAACTAGATGGATCCTAAACCATCTATGATTGACTCAGTCTCATTGGAGTAGACATTTGTACACCAAAAACAGAACAACAAAATACATTTAAGCTTGACTTCCTGCAGGTTGTTGTCCTTATTTTCAAAACATCTATGATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGTATTATCCTCCATCTTTCTATGTTTGTAGCCTCAACTCCAGCTTCCTCCCAACTGAAAAGGGTCTCATCAATCTTACTAGGCATACTCCAGGAAATGCCTCTGACATTAAGGAAAATCTGCCACAGTTGAGCAGTGAAATTGGAGTGTAGAAAGAGGTGTTTTACTGTCTCTGTATCCTTACCACATAAGGAGCATCTGTTGCATAATGATATACCTCTCTTGGCCACATTGTCCAATGTCAAAACTGCTTCATTGGCTAGCAGCCAGGTGAAGCATGCCACTTTTTGTGGAACTTTGACTCCAAATTTGCTTCCAAGGCCATCTGAAATCTTGATTCTCCACAAGACTTGTTTGTTTATATCCTTCATTCACCCTAGGTATCCAATACATTGTCATTTCCATAACTATTTGCTTACAACAGTAGCTTCAAGTTCTAGTTTGTTTGATTGCTCTCGTTTTTGTCGTCGTACTGTATGCTATGTACTGTTTTGATGAGAGGTTGACATTGTATTCTTTCTCTGTGTGACAATTGTGGGTAATTTTTCTTGTTTGATTTGATGTCTTGGCCTAGAGGAGCTTAACTATTGAGCTGGCTTGTTTGGATCGCTCTTGCTGTAAAAAGTTCATCACAGAGTTGACACTTTTAGGACTTCAACAAATAGTTATAATGTATAGACTGTGTTTATGCTTTTGTTTGACCTCACTGATTATGATCTTTCTGATGATATCAGAGAAAGAAGCATGAGGGCAAGGAGGATCTTAATGATGTTAACAAACACAAGAGAAACAAGGTAAGATAATTTTTTTTTTCAATATGATCTGTGCAAACGTTAAGTTCGTTTCTGAGCTCATTATATGGGCAGATTTTTCAGTATATTGAGACCATACCTTCACCTTATACAATATTCTTACATGCTGAAATGTTGCAGCACACGAGCTAAAAGATTGATGAAATTGGGGCAGTAAAGGTTACGTGCTGAAATGTCACATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCAGTTAAGAATTTGGAGGAATCCTTTTCTTATTGTAAAATATCTAAGGTACAGATGTTCTTATCCTACTATATCCGACACATTGAATAACTTCATGAGTCTTTCCATCCATGCCATCTATTATAGAAGGTCTATATCCTATTTGATTCTGGAAGAAAAGAAAGACTAATTATTGACGTCAGAAGCTGTTTGCAGCCTGTTTTGTAGCCATTAGGTGCCCATGAGGTTCATATATATGACTTTAAAGTATTTCAGTTTGTGGATTTTGAACATTTGCATTTGTTGGATAAAAAGCAGATTCCTAATTATGGTCTTTTAGTGTTGCTTGTGCTTTTTATCTGTATATATTCTGTTGCAGACTGGAAGGGCTGCTGAGACTATTAAAACATAAAAAATAGAAGAGTTAGTAGACATTTTAGATACAGAGAGTTATTTGACATTGCATTCTGCTGTTAGCGTCTATTTTTGGCGTTTTCAACCTAGAGCACATCATAGTATTTGTTACCTTTTGTGTTTCATAATGTTTCTGTTTCTCTTCTCCATGCAGAATAGCTTCTGGACAAACTAAAGAATGGCAAGAGGGTGAATGCAGCTGTTGAAACTAGATTTTAGTGAAATGTACATAGTGCTGAAAAACAACCTCATTGTATTATACTATATAAGAGCTTGTTTGACATTGTTTATTTTCATAAGCACTTTCTTTTTTGGTAAACTAAAGTTTTTATTTACCAAATGGATAATGTACAGCTTAAGAAAAGGGAACAAAAACAAAACTCTAGCTGGGAAGGACTTATTGCTCCTATATGCATGTGTAATATAGAGTAACTATTATAAATAGTATTTCAACTACCTTTATTTATATTTCAA</genome_strand>
        <mrna_strand>TCATGATTCTGGTGCTGACCTTTCAAAGAAACATCATGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAANAGCATGAGGGCAAGGAGGATCTTAATGATGTTAACAAACACAAGAGAAACAAG..........................................................................................................................................CACACGAGCTAAAAGATTGATGAAATTGGGGCAGTAAAGGTTACATGCTGAAATGTCACATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCAGTTAAGAATTTGGAGGAATCCTTTTCTTATTGTAAAATATCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCTTCTGGACAAACTAAAGAATGGCAAGAGGGTGAATGCAGCTGTTGAAACTAGATTTTAGTGAAATGTACATAGTGCTGAAAAACAACCTCATTGTATTATACTATATAAGAGCTTGTTTGACATTGTTTATTTTCATAAGCACTTTCTTTTTTGGTAAACTAAAGTTTTTATTTACCAAATGGATAATGTACAGCTTAAGAAAAGGGAACAAAAACAAAACTCTAGCTGGGAAGGACTTATTGCTCCTATATGCATGTGTAATATAGAGTAACTATTATAAATAGTATTTCAACTACCTTTATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704798" ref_strand="+" ref_description="SGN-E704798 [FA25BB11]">
      <seq>atctcacctcggcgaaagaggaattagggttttaatagcatctcaattggagggcaaaatagatttgtgcttcgacggaaccctaatttgcttctccgatcactctgtcagattgattcccaggaaatgatgctctatcttatgctgggggctaattgatggatccagacagcaagaagtttggaagagggccaagagagcttgcaggtgcggtggatcttattaatcactacaagttgttgcctcatcacgagtacttctgcaagaagcctcttccattgtcaatttcagatacacgctaccttcacaatgttgtgggagacagagagattaggaaaggggaagggatgcagttggatcagcttatacatgatacgtcttttttaaaagagacaaattcacgcatccaaccatttgagttagatgctcttaatgaagcttttcaactacgtgaagcagctccaattgttctgcctccgtctgaaaaagggatccccactgtagctggaaagtctaaaagtgagtcgaaagacaaggagaagaagcataagaagcacaaggataaagacaaggagaaggacaaagagcataagaagcacaaacaccgtcataaagatcgaagtaaagacaaggataaagagaaaaagaaagataacactggccgtcatgattctggtgctgacctttcaaagaaacatcatgaaaagagaaagaagcatgagggcaaggaggatcttaatgatgttaacaaacacaagagaaaacagcaccccagctaaaagattgatgaaattggggcagtaaaaggttacgtgctgaaatgtcacatgtgctgctataatttactgctcccatgcgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31307" stop="24280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31007" g_stop="30892" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30891" i_stop="27930" i_length="2962">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.615" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27929" g_stop="27857" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="189" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27856" i_stop="27084" i_length="773">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27083" g_stop="26794" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="479" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26793" i_stop="26611" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26610" g_stop="26383" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="707" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26382" i_stop="24873" i_length="1510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24872" g_stop="24813" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="767" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24812" i_stop="24675" i_length="138">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24674" g_stop="24580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="863" r_length="96" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E704798" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31007" e_stop="30892"/>
          <exon e_start="27929" e_stop="27857"/>
          <exon e_start="27083" e_stop="26794"/>
          <exon e_start="26610" e_stop="26383"/>
          <exon e_start="24872" e_stop="24813"/>
          <exon e_start="24674" e_stop="24580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCACCTCGGCGAAAGAGGAATTAGGGTTTTAATAGCATCTCAATTGGAGGGCAAAATAGATTTGTGCTTCGACGGAACCCTAATTTGCTTCTCCGATCACTCTGTCAGATTGAGTATGCTTTCTTTCTACGTCGAAATTTGAATTCATATATTTTGTATGATTGTATGTTTTTTGGATTCCTCTTTGCTGTTTTTTTGCTTATAATTGAACTCTGGCGATGAAGATGTTTGGTTGATACTAGAATGTATTAAATGATGAGAATTGGCAGCAATGACTTAACTTTGGATTTCGAGTGAATTTGAAATATACTGGCATTTTTAGTATGTCAAATTTTGAATTTTGGCGTTAAAGGTGGTCTAAGATTTTGTAAATTGAAAGTCCAGTTATTGATTATTGGGATTGATCTTTATGGAGTTTTGATGTTTTTTTCGATCTTTTGTAAATGTATGTTTTTTTTAAAGGATAGACAATAACAACAAAAAAATCCAGTGAAATCCCATAAAGTGTGGTTTGGGGAGGGAGATTGTACGTATTAGGCCTTACCACTACCTCAGAGAGGCTGTTTCTTGAAGAACTTCTGATCAAGTAAATCAAAGCTGTAATTAAAAGAAAACATGACAGCCCTTGTCATATCTGTAAAGAGGATTCCCAGTGAATTATCTTCTTTTTGTGTAGATTATGAGTTTTCTTTGTTATATATCCTGCTAGCGAGTTAATCTTTCCTTCCCAAAATAGTGACTGAGTCTCCTTGTTGCCTCATTTGAAAAAGCTCAATCATTTTTCTTCATATGGCATATTTCCCTCAAACGAATCAAACTGATAAATTGATGCCTTTTATATTGTTTATAGACCAAACACATTAAGGCCCCTTAAACTTGCCACAAGTTTTCATTTTGCTACCTTGGCTCAACTATGGCTTGTTCCAATCAGACACTTAAAGTAAGTCTGAACTTTGTCTTTGAAGCACCTCACCGATAATCACCTAAAAATATTAAGTGTGTGTTATTCACACTCATTGACATGAATAAGTTCCAAATAAAATGAAGACACGTGGCATTTGGATTCATATATTAAACAACATTATAAAATAATATATATGTTATTTTCGCATGATCCCTCCCATCGTGAATTTTCTTCCCACTTCACAATACCAATGGTTATACCAGTGTTCTTCACTAGCCTCTTCCATCGTCTCCTACCCCCACCCCTAAAGCTTTGCTCACATTCTTCTTCAATTTTCAATCCCAATTGTTGCCAGTATTGTGTTTTGTGTTGTGCATTATTAGTGCTATAAGTTGTTCGCATTATCTGACTTCTCCTTCTAATAAATAATTAAACTAAAAATGTATGCCTTTAGTCCATGACTCCACGCCTCTTTGTTTTTCTAGTATCCTAGAGACCCAGGCCAATGGTTATTATACTAAATGCGAAATAGTGATTATCTAATTTTATCATTATTTTGTATCATAACGATCTTGATAGTTCTTGTTTCAATCAAATTAAATTGAATCATATAGTATTTCATGATTCAGTAGTTTCAGATGACAATAGAAAGAAGACAGGAAAAGAAATTAAGTAGAATATTTTTTTAGGCTTTCACTCTCTTAGTGAAAATGTGATACACACACTCTCCCACATCGCTTATTTGTGTTTAATAGGTATACTTTTAATGATGTTGAAGTGTATATAATAATTAGTGTTATAGAAAGCGAAATTAAGGTCCTTTGGGATTTTAGCGCAAATAAAGCGTGTGCTTTATTGGAAAAAGATGCAAATGGAGAAAAACTACAAAGATGTATTTGTAATCCAAGACTAATAATCATAAGCATGAACAATAAATATACGGACAAAGAAATTGAAAAATAATTATAATAAAATGAAATATCAACTGTTTAGTGCCACCTCTTCAAGATTGCACTCATTGGTAAGGAAAAATATGTTTTACATCCTTGGTGACAACACCAAAGTGCTTATAAAGCGACAGAAGCACTCAACCTGTTTTTTGCCTCGTTTTAGGGCGTAAGTGCACCTTTCACGGATAATAATAAACTATTTTTATGATACTTCTCTACCAATCCCAATATAATAATCTATTCATACATTCTCTTATTGAACTCCCCGTTAGTAAAATCAGATCATTTTATCAGGTAGAGGGAGTATTTGTCTCCTGGTCAATTGTCTAAAGTTGCGTATTGGGATCTTTATGCTTGCATGTTTCCTCTTGAGACGGCTTTCAATATCAGTTTTTTATCATCATTTTTCCCCCTAAATATTCCGCTGCCGGGACTTGAACCCTGATCTTTCGGGTGAGAGCCGAGTATCCTGACCAACTAGACATTTGTTATCTTATTTCACTTTTCATGTTATGATGTATTTTGATGACTTGATACATGGAAACCATGTCATTATTAATTTCATCCCAAAACTGGCTTTGTCTTCATCATTTGCATTCTTTCATGGCTCTTCCAGAATAAAGATTTAGACTGAAAATAACTTACTTCCTTTTTATTCTGTTTTTGCCTATTTAACTTTCATAATATCTCCTAATAATCGTCTCTGAACATGTATTACCAGTTATGTTTTGTTGTCTCCTTTTCTTACTTTCCCCTCTATGCTGTGGCCTGTGGGCTCCCATCATTCCATACTTTAGAGCCTTGTATTCTTGTGAAAGAAAATGTATACTGCTGGATTTTATTGCCGTTCAACGTTATATTTAAGTATCATTGAGTGATTTGTGAGACGAGCTGATCTATTCGTGAATTCACATTCTAAGTTGTCTCACTAATTTGGCAGATTAATGTTTGGTTTCATTCTTGATTTACTGGAGCTGTCATTTTTTTGACTCTTAACAATTTAAGTTTGACTAAAATTAATCCATGCCAAACCAAGGTGTCTTGGTGTCTTTTACTTTGTATAAATACTGAAATTGATGCGCTTTATCGGTTCACCATGGTTACTAAGCCAGCTTATATATGAATTTATGTATTGCCATTGCCATTTTGTTTGCATTCCAAATCTTACACATAGACCATTATTAGCTGGATAGTTGTGGACATTGTCTTACCTACCAATAGTTCCCAGGAAATGATGCTCTATCTTATGCTGGGGGCTAATTGATGGATCCAGACAGCAAGAAGTTTGGAAGAGGTGAGCTTCTTACTGTGATCTTTGAACAGTTCCTTTGCATGTTTGGGTAAAATGACTACTGCTAACATTTGACTCTACTTGGGTCCATATTGCATGTCTAGGTTTTGATTGAAGGTGGAATGGAATGCATTGCATTTGATCTGTACTTGTATATGTGAATTTCATGCTTGATCTATTTGGTATTAAATTTTGTCTCTTCTGTTTTTCTTCTTCTTTTGTGGTGCCATTTTATTTAATTTCAGGAAGTGGAAGTGGTTGATTTACTTCTGACTTGAATTTGCCTATTTCTTTTGCACTTAAGTATGTAACCACTATCATCTATTTGTAAAACAAACGAAGATTAGTGATGCTTGTTTTGTTGCTTCTTGAATGAGGTTCTGCAAAATTCTCTGTGCTAAGCAACGTGTTATCCAGCTTCATCTTGCAGCATTTGGATTAATGTTGGCTGGTACTTTGTTCATAGGGTTACGAGTTTGGTAACAAGATCTCACAAATTACTAAAATATGCTTGAAGTCGTGCCAAAGTGGTCACAGTTTGCACACAGTTAAGGTGTTTTATAAAGATTGTGATTTGCTTAAAGAATATTGTGCTTCCCGTTTTTAAAAATTCCGAAGAATTTAAAATCAAAATCATTTGACTCTTTGATCTTCTTTTCATTGACATTTTTTCATTTTAATTTAGACACTGTTGGCTTTTTAATTTAGACACTGTTGACTTTTTAATTTAGACACCGTTGGCTTACTGTGGTTGATTGGTCCAATTACATTATTAGGGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCGGTAAGAAACCTATTGTGTGAAGCTTGAGTTATATAAGTATGTCTGATTCAGCTCTTTAAGTAACCCTTTCACTCCTTTCTGATCTCTGAAGATGGAGGCAGAACTGCATTTTTTTTCTAACCCTGTGCTTTTCTATAATGCCAGTTTGCCTGTTCCACTAATTCCTGATTTGGTGTTTCATAGTCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGACAAGGAGAAGAAGCATAAGAAGCACAAGGATAAAGACAAGGAGAAGGACAAAGAGCATAAGAAGCACAAACACCGTCATAAAGATCGAAGTAAAGACAAGGATAAAGAGAAAAAGAAAGATAAAACTGGCCGTCATGATTCTGGTGCTGACCTTTCAAAGAAACATCATGAAAAGGTCTGCTACTAGCAAATGTTAATAAAATTATTAACCTTATCAAAAAAAAAAAAAAAGACTAGCAAATTTAAGAGTTATGCAAATCTGGTGATTCTCCTGTCATGCCATATACTGTGAATATCATGTGGTTGTTCCATATTTAAGAAGTTTAGAAGACTGGTTCACAGTAAAGACACTTAATAATTGGCCCAATGGTGTCTTTACTGAAAATGGCATTACTTCGTTACTGACAGAAATATTTTTTATAGTTCCACTTAGAATCTTGCTATCCGTTTCTCTTGCTTCCGTGCACTTTCACTACATTGCTTGTGATGTAGCTTATAAGTTGCATTTATAGGATTTTAGTAGAATAGAGTTCAGGATAAAAAGGTTTAATTTTAGGAAATATCTAGCTCAAGAGTTTGTTGAATTAATCGTTGCTTGACTTTCAGTTTTTAGTCACTGCATCAAAAGATAGCCATTTGACTTAGTTTAATTAGGTATCCAATACATTTTTTTTTGACATTAGTAACATTGTATTTCAGTCAGTACTTGGGTAGTACTGAAAAACCATATTTACAAAAATAAGAAAAAGAATAAAGTCCTTCCAATGCTAAACCAGGAACTAGATGGATCCTAAACCATCTATGATTGACTCAGTCTCATTGGAGTAGACATTTGTACACCAAAAACAGAACAACAAAATACATTTAAGCTTGACTTCCTGCAGGTTGTTGTCCTTATTTTCAAAACATCTATGATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGTATTATCCTCCATCTTTCTATGTTTGTAGCCTCAACTCCAGCTTCCTCCCAACTGAAAAGGGTCTCATCAATCTTACTAGGCATACTCCAGGAAATGCCTCTGACATTAAGGAAAATCTGCCACAGTTGAGCAGTGAAATTGGAGTGTAGAAAGAGGTGTTTTACTGTCTCTGTATCCTTACCACATAAGGAGCATCTGTTGCATAATGATATACCTCTCTTGGCCACATTGTCCAATGTCAAAACTGCTTCATTGGCTAGCAGCCAGGTGAAGCATGCCACTTTTTGTGGAACTTTGACTCCAAATTTGCTTCCAAGGCCATCTGAAATCTTGATTCTCCACAAGACTTGTTTGTTTATATCCTTCATTCACCCTAGGTATCCAATACATTGTCATTTCCATAACTATTTGCTTACAACAGTAGCTTCAAGTTCTAGTTTGTTTGATTGCTCTCGTTTTTGTCGTCGTACTGTATGCTATGTACTGTTTTGATGAGAGGTTGACATTGTATTCTTTCTCTGTGTGACAATTGTGGGTAATTTTTCTTGTTTGATTTGATGTCTTGGCCTAGAGGAGCTTAACTATTGAGCTGGCTTGTTTGGATCGCTCTTGCTGTAAAAAGTTCATCACAGAGTTGACACTTTTAGGACTTCAACAAATAGTTATAATGTATAGACTGTGTTTATGCTTTTGTTTGACCTCACTGATTATGATCTTTCTGATGATATCAGAGAAAGAAGCATGAGGGCAAGGAGGATCTTAATGATGTTAACAAACACAAGAGAAACAAGGTAAGATAATTTTTTTTTTCAATATGATCTGTGCAAACGTTAAGTTCGTTTCTGAGCTCATTATATGGGCAGATTTTTCAGTATATTGAGACCATACCTTCACCTTATACAATATTCTTACATGCTGAAATGTTGCAGCACACGAGCTAAAAGATTGATGAAATTGGGGCAGT-AAAGGTTACGTGCTGAAATGTCACATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCT</genome_strand>
        <mrna_strand>ATCTCACCTCGGCGAAAGAGGAATTAGGGTTTTAATAGCATCTCAATTGGAGGGCAAAATAGATTTGTGCTTCGACGGAACCCTAATTTGCTTCTCCGATCACTCTGTCAGATTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAGGAAATGATGCTCTATCTTATGCTGGGGGCTAATTGATGGATCCAGACAGCAAGAAGTTTGGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCG.......................................................................................................................................................................................TCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGACAAGGAGAAGAAGCATAAGAAGCACAAGGATAAAGACAAGGAGAAGGACAAAGAGCATAAGAAGCACAAACACCGTCATAAAGATCGAAGTAAAGACAAGGATAAAGAGAAAAAGAAAGATAACACTGGCCGTCATGATTCTGGTGCTGACCTTTCAAAGAAACATCATGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAAGCATGAGGGCAAGGAGGATCTTAATGATGTTAACAAACACAAGAGAAAACAG..........................................................................................................................................CACCCCAGCTAAAAGATTGATGAAATTGGGGCAGTAAAAGGTTACGTGCTGAAATGTCACATGTGCTGCTATAATTTACTGCTCCCATGCGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211968" ref_strand="+" ref_description="SGN-E211968 [cLEC-66-B23]">
      <seq>aagaagtttggaagagggttacgagtttggtaacaagatctcacaaattactaaaatatgcttgaagtcgtgccaaagtggtcacagtttgcacacaggccaagagagcttgcaggtgcggtggatcttattaatcactacaagttgttgcctcatcacgagtacttctgcaagaagcctcttccattgtcaatttcagatacacgctaccttcacaatgttgtgggagacagagagattaggaaaggggaagggatgcagttggatcagcttatacatgatacgtcttttttaaaagagacaaattcacgcatccaaccatttgagttagatgctcttaatgaagcttttcaactacgtgaagcagctccaattgttctgcctccgtctgaaaaagggatccccactgtagctggaaagtctaaaagtgagtcgaaagacaaggagaagaagcataagaagcacaaggataaagacaaggagaaggacaaagagcataagaagcacaaacaccgtcataaagatcgaagtaaagaccaggataaagagaaaaagaaagataaaactggccgtcatgattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28172" stop="26115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27872" g_stop="27857" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27856" i_stop="27394" i_length="463">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27393" g_stop="27313" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27312" i_stop="27084" i_length="229">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27083" g_stop="26794" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="387" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26793" i_stop="26611" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26610" g_stop="26415" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="583" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E211968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27872" e_stop="27857"/>
          <exon e_start="27393" e_stop="27313"/>
          <exon e_start="27083" e_stop="26794"/>
          <exon e_start="26610" e_stop="26415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTTTGGAAGAGGTGAGCTTCTTACTGTGATCTTTGAACAGTTCCTTTGCATGTTTGGGTAAAATGACTACTGCTAACATTTGACTCTACTTGGGTCCATATTGCATGTCTAGGTTTTGATTGAAGGTGGAATGGAATGCATTGCATTTGATCTGTACTTGTATATGTGAATTTCATGCTTGATCTATTTGGTATTAAATTTTGTCTCTTCTGTTTTTCTTCTTCTTTTGTGGTGCCATTTTATTTAATTTCAGGAAGTGGAAGTGGTTGATTTACTTCTGACTTGAATTTGCCTATTTCTTTTGCACTTAAGTATGTAACCACTATCATCTATTTGTAAAACAAACGAAGATTAGTGATGCTTGTTTTGTTGCTTCTTGAATGAGGTTCTGCAAAATTCTCTGTGCTAAGCAACGTGTTATCCAGCTTCATCTTGCAGCATTTGGATTAATGTTGGCTGGTACTTTGTTCATAGGGTTACGAGTTTGGTAACAAGATCTCACAAATTACTAAAATATGCTTGAAGTCGTGCCAAAGTGGTCACAGTTTGCACACAGTTAAGGTGTTTTATAAAGATTGTGATTTGCTTAAAGAATATTGTGCTTCCCGTTTTTAAAAATTCCGAAGAATTTAAAATCAAAATCATTTGACTCTTTGATCTTCTTTTCATTGACATTTTTTCATTTTAATTTAGACACTGTTGGCTTTTTAATTTAGACACTGTTGACTTTTTAATTTAGACACCGTTGGCTTACTGTGGTTGATTGGTCCAATTACATTATTAGGGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCGGTAAGAAACCTATTGTGTGAAGCTTGAGTTATATAAGTATGTCTGATTCAGCTCTTTAAGTAACCCTTTCACTCCTTTCTGATCTCTGAAGATGGAGGCAGAACTGCATTTTTTTTCTAACCCTGTGCTTTTCTATAATGCCAGTTTGCCTGTTCCACTAATTCCTGATTTGGTGTTTCATAGTCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGACAAGGAGAAGAAGCATAAGAAGCACAAGGATAAAGACAAGGAGAAGGACAAAGAGCATAAGAAGCACAAACACCGTCATAAAGATCGAAGTAAAGACAAGGATAAAGAGAAAAAGAAAGATAAAACTGGCCGTCATGATTCTG</genome_strand>
        <mrna_strand>AAGAAGTTTGGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGAGTTTGGTAACAAGATCTCACAAATTACTAAAATATGCTTGAAGTCGTGCCAAAGTGGTCACAGTTTGCACACA.....................................................................................................................................................................................................................................GGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCG.......................................................................................................................................................................................TCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGACAAGGAGAAGAAGCATAAGAAGCACAAGGATAAAGACAAGGAGAAGGACAAAGAGCATAAGAAGCACAAACACCGTCATAAAGATCGAAGTAAAGACCAGGATAAAGAGAAAAAGAAAGATAAAACTGGCCGTCATGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274360" ref_strand="+" ref_description="SGN-E274360 [cLEN-15-P22]">
      <seq>cagcaagaagtttggaagagggccaagagagcttgcacgtgcggtggatcttattaatcactacaagttgctgcctcatcacgagtacttctgcaagaagcctcttccattgtcaatttcagatacacgctaccttcacaatgttgtgggagacagagagattaggaaaggggaagggatgcagttggatcagcttatacatgatacgtcttttttaaaagagacaaattcacgcatccaaccatttgagttagatgctcttaatgaagcttttcaactacgtgaagcagctccaattgttctgcctccgtctgaaaaagggatccccactgtagctggaaagtctaaaagtgagtcgaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28176" stop="26257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27876" g_stop="27857" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27856" i_stop="27084" i_length="773">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27083" g_stop="26794" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="310" r_length="290" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26793" i_stop="26611" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26610" g_stop="26557" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="364" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E274360" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27876" e_stop="27857"/>
          <exon e_start="27083" e_stop="26794"/>
          <exon e_start="26610" e_stop="26557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGAAGTTTGGAAGAGGTGAGCTTCTTACTGTGATCTTTGAACAGTTCCTTTGCATGTTTGGGTAAAATGACTACTGCTAACATTTGACTCTACTTGGGTCCATATTGCATGTCTAGGTTTTGATTGAAGGTGGAATGGAATGCATTGCATTTGATCTGTACTTGTATATGTGAATTTCATGCTTGATCTATTTGGTATTAAATTTTGTCTCTTCTGTTTTTCTTCTTCTTTTGTGGTGCCATTTTATTTAATTTCAGGAAGTGGAAGTGGTTGATTTACTTCTGACTTGAATTTGCCTATTTCTTTTGCACTTAAGTATGTAACCACTATCATCTATTTGTAAAACAAACGAAGATTAGTGATGCTTGTTTTGTTGCTTCTTGAATGAGGTTCTGCAAAATTCTCTGTGCTAAGCAACGTGTTATCCAGCTTCATCTTGCAGCATTTGGATTAATGTTGGCTGGTACTTTGTTCATAGGGTTACGAGTTTGGTAACAAGATCTCACAAATTACTAAAATATGCTTGAAGTCGTGCCAAAGTGGTCACAGTTTGCACACAGTTAAGGTGTTTTATAAAGATTGTGATTTGCTTAAAGAATATTGTGCTTCCCGTTTTTAAAAATTCCGAAGAATTTAAAATCAAAATCATTTGACTCTTTGATCTTCTTTTCATTGACATTTTTTCATTTTAATTTAGACACTGTTGGCTTTTTAATTTAGACACTGTTGACTTTTTAATTTAGACACCGTTGGCTTACTGTGGTTGATTGGTCCAATTACATTATTAGGGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCGGTAAGAAACCTATTGTGTGAAGCTTGAGTTATATAAGTATGTCTGATTCAGCTCTTTAAGTAACCCTTTCACTCCTTTCTGATCTCTGAAGATGGAGGCAGAACTGCATTTTTTTTCTAACCCTGTGCTTTTCTATAATGCCAGTTTGCCTGTTCCACTAATTCCTGATTTGGTGTTTCATAGTCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGAC</genome_strand>
        <mrna_strand>CAGCAAGAAGTTTGGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGAGAGCTTGCACGTGCGGTGGATCTTATTAATCACTACAAGTTGCTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCG.......................................................................................................................................................................................TCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229379" ref_strand="+" ref_description="SGN-E229379 [cLEL-4-J5](-)">
      <seq>gactcaatgctttgaacgcaagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttatatatttgtctatcatttcatttaaaagataattaattattcataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32744" stop="31859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32444" g_stop="32159" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="288" polyA_stop="305"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E229379" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32444" e_stop="32159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCAATGCTTTGAACGC-AGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</genome_strand>
        <mrna_strand>GACTCAATGCTTTGAACGCAAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229738" ref_strand="+" ref_description="SGN-E229738 [cLEL-4-J5](-)">
      <seq>gattagtgaatttgtaaaaaaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagtttggcatgcttagtagaaataaaacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttatatatttgtctatcatttcatttaaaagataattaattattcataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32691" stop="31859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32391" g_stop="32159" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="252"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E229738" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32391" e_stop="32159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAG-AATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</genome_strand>
        <mrna_strand>GATTAGTGAATTTGTAAAAAAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTGGCATGCTTAGTAGAAATAAAACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620876" ref_strand="-" ref_description="SGN-E620876 [71582]">
      <seq>attggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgacgacgacgacgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctatttatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttacttcagccttctattccattgagttttaacttatatatttgtctatcatgttcatttaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33549" stop="31868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33249" g_stop="33120" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="300" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32497" g_stop="32162" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="639" r_length="339" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E620876" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620876" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33249" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAAT---GATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCAT-TTCATTTAAAAGATAATTAATTATTC</genome_strand>
        <mrna_strand>ATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGACGACGACGACGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTTATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTATATTTTTACTTCAGCCTTCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATGTTCATTTAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352321" ref_strand="+" ref_description="SGN-E352321 [cTOS-9-A6]">
      <seq>aactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttatatatttgtctatcatttcatttaaaagatnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33481" stop="31868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33181" g_stop="33120" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="232" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32497" g_stop="32173" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="557" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="572"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E352321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33181" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATA</genome_strand>
        <mrna_strand>AACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304990" ref_strand="-" ref_description="SGN-E304990 [cLEX-10-N12]">
      <seq>ctcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33479" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33179" g_stop="33120" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="230" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32497" g_stop="32197" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="531" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E304990" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304990" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33179" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTT</genome_strand>
        <mrna_strand>CTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746602" ref_strand="+" ref_description="SGN-E746602 [GI|47104148]">
      <seq>ctttaactcattccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35922" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35622" g_stop="35563" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="130" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="222" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="349" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="546" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="681" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="851" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32203" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="1146" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1147" polyA_stop="1161"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E746602" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1146</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35622" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTAT</genome_strand>
        <mrna_strand>CTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215824" ref_strand="+" ref_description="SGN-E215824 [cLEL-15-I18](-)">
      <seq>aggttcaagctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagtctcacaagaggtgcacccttaagaagctgacttattaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgtcgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcgttttgcgactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctagtccagtgagttttgcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33171" stop="31910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32871" g_stop="32799" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32203" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="368" r_length="295" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="386"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E215824" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32871" e_stop="32799"/>
          <exon e_start="32497" e_stop="32203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTC-TTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTAT</genome_strand>
        <mrna_strand>AGGTTCAAGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGTCTCACAAGAG.............................................................................................................................................................................................................................................................................................................GTGCACCCTTAAGAAGCTGACTTATTAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGTCGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCGTTTTGCGACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTAGTCCAGTGAGTTTT-GCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697113" ref_strand="+" ref_description="SGN-E697113 [LH_Ea10O07](-)">
      <seq>gaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctgaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggtctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagagatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagaaaggaaagctaagttgatcgagagactcaatgctttgaatgcagctggtggaaatgatgacgatgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgaggctcgtcaattttgacaaatgtatgggattatattttaggggcaggcatctattccattgagttttatcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34422" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34122" g_stop="34094" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="109" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="226" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="361" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="531" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="824" r_length="293" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="837"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E697113" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34122" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTGAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGTCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAGATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAAAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAATGCAGCTGGTGGAAATGATGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGGCTCGTCAATTTTGACAAATGTATGGGATTATATTTTAGGGGCAGGCATCTATTCCATTGAGTTTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423704" ref_strand="-" ref_description="SGN-E423704 [STM-42-O6]">
      <seq>ggttgattgacgaactatgctgctgcatactgtaccgactttctctgggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgcgcagacccatgcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgattgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttgcttcaggcttctataaaaattgagttttaacttacaaaaaaaagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34308" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34118" g_stop="34094" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="105" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="222" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="357" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="527" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="823" r_length="296" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E423704" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423704" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34118" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTAT-TCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GGTTGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGACTTTCTCTGGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGCGCAGACCCATGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATTGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTATATTTTTGCTTCAGGCTTCTATAAAAATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578157" ref_strand="-" ref_description="SGN-E578157 [LE08EH09]">
      <seq>gttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaaatgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34110" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33810" g_stop="33715" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="231" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="401" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="694" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="713"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E578157" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578157" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33810" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391137" ref_strand="+" ref_description="SGN-E391137 [TUS-47-D4](-)">
      <seq>taagaattactacagggaaccgtgtgtttggtgctctcaagggtgccattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34055" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33755" g_stop="33715" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="177" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="347" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="640" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="653"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E391137" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33755" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTG-CATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>TAAGAATTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368438" ref_strand="-" ref_description="SGN-E368438 [TUS-23-H17]">
      <seq>accgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34037" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33737" g_stop="33715" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="158" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="328" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="621" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="639"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E368438" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368438" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33737" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>ACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558416" ref_strand="+" ref_description="SGN-E558416 [17753]">
      <seq>cgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaactactttgaatccttggttgccttaaggttttcaattaatattgtgtttcttttgccatgcttagtagaatgagacttgtcaatttttgacaatgtatgggattatatttttgcttcagcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34035" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33735" g_stop="33715" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="156" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="326" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="598" r_length="272" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="617"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E558416" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33735" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTT-GTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>CGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAACTACTTTGAATCCTTGGTTGCCTTAAGGTTTTCAATTAATATTGTGTTTC---T--T--T---T-G------C-------CATGCTTAGTAGAATGAGACTTGTCAATTTTTGACAATGTATGGGATTATATTTTTGCTTCA-GCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349032" ref_strand="+" ref_description="SGN-E349032 [cTOF-29-J10]">
      <seq>tgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccaattgagttttaacttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34033" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33733" g_stop="33715" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="154" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="324" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="618" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="633"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E349032" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33733" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCC-ATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>TGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCAATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200174" ref_strand="-" ref_description="SGN-E200174 [cLEB-7-L19]">
      <seq>gcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaaaaaaaactcgagacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33483" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33183" g_stop="33120" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="234" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="527" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="552"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E200174" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200174" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33183" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306999" ref_strand="-" ref_description="SGN-E306999 [cLEY-11-D10]">
      <seq>gcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaacaaaaaacaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33483" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33183" g_stop="33120" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="234" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="527" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="542"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E306999" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306999" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33183" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240442" ref_strand="-" ref_description="SGN-E240442 [cLED-25-P12]">
      <seq>gctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33283" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33134" g_stop="33120" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="185" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="478" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="496"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E240442" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240442" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33134" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714918" ref_strand="+" ref_description="SGN-E714918 [FB12DC07]">
      <seq>ccctcagaagattgtttgattttcagtgttcattctggcttctatttactcctcatctctaatatgcttgatcattgtttgcagactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaaatgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33350" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33052" g_stop="32799" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="545" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="562"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E714918" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33052" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>CCCTCAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAG--ACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353842" ref_strand="+" ref_description="SGN-E353842 [cTOS-10-L23]">
      <seq>tcccccgggctgcaggctttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33273" stop="31902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32983" g_stop="32799" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="478" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="513"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E353842" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32983" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>TCCCCCGGGCTGCAGGCTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292100" ref_strand="+" ref_description="SGN-E292100 [cLET-1-I3](-)">
      <seq>ctttgatggaagatgaccctgagaaatatcagacacccttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaaaaggtacacccttaagaagctgacttatgaaaagaggaaagttaagttgatcgacagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtaaaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgcaactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33267" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32967" g_stop="32799" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="462" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="497"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E292100" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32967" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>CTTTGATGGAAGATGACCCTGAGAAATATCAGACACCCTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAAAG.............................................................................................................................................................................................................................................................................................................GTACACCCTTAAGAAGCTGACTTATGAAAAGAGGAAAGTTAAGTTGATCGACAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAAAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCAACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559070" ref_strand="+" ref_description="SGN-E559070 [18509]">
      <seq>tttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgacgacgacgacgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctatttatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttacttcagccttctattccattgagttttaacttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33266" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32966" g_stop="32799" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="463" r_length="295" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="489"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E559070" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32966" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAAT---GATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>TTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGACGACGACGACGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTTATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTATATTTTTACTTCAGCCTTCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241938" ref_strand="-" ref_description="SGN-E241938 [cLED-27-P2]">
      <seq>agacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgagaagatgtacaagaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcatcctcccaagacacacaagaggtccaaccttaagaagctgtcttatgtagagaggatagctaagttgatcgagagactcaatgctttgaacgcaggtggtggaaatgatgacgatgaggaagtcgccgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaccctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatacttttgcttcaggcatctattccattgagttttaacttacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33237" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32937" g_stop="32799" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="432" r_length="293" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="448"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E241938" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32937" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>AGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGAAGATGTACAAGAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCATCCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTCCAACCTTAAGAAGCTGTCTTATGTAGAGAGGATAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGGTGGTGGAAATGATGACGATGAGGAAGTCGCCGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAACCCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATACTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228730" ref_strand="+" ref_description="SGN-E228730 [cLEL-29-A11](-)">
      <seq>atacatcaagcgggtcttaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaacccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33221" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32921" g_stop="32799" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="415" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="439"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E228730" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32921" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAA-CCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>ATACATCAA-GCGGGTCTT-AGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277117" ref_strand="-" ref_description="SGN-E277117 [cLEL-3-E13]">
      <seq>atcttaaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatgttgttgcttcaggcatctattcccctcagttttaacttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33192" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32892" g_stop="32799" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="387" r_length="293" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="404"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E277117" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32892" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>ATCTTAAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATGTTGTTGCTTCAGGCATCTATTCCCCTCAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242156" ref_strand="-" ref_description="SGN-E242156 [cLED-37-J16]">
      <seq>atgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33181" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32881" g_stop="32799" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="376" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="394"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E242156" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242156" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32881" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>ATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225286" ref_strand="+" ref_description="SGN-E225286 [cLEL-17-K16](-)">
      <seq>aaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33174" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32874" g_stop="32799" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="369" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="389"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E225286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32874" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>AAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221070" ref_strand="+" ref_description="SGN-E221070 [cLEL-22-O14](-)">
      <seq>ggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtccaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagccgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgtcaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33170" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32870" g_stop="32799" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="365" r_length="293" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="383"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E221070" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32870" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTCCAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGCCGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGTCAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221396" ref_strand="+" ref_description="SGN-E221396 [cLEL-22-O14](-)">
      <seq>tcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccagacacacaagaggtacaaccttagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33167" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32867" g_stop="32799" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="360" r_length="292" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="378"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E221396" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32867" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>TCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCC-AGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTT-AGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229018" ref_strand="+" ref_description="SGN-E229018 [cLEL-29-A11](-)">
      <seq>gacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagtttttccttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33148" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32848" g_stop="32799" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32205" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="367"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E229018" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32848" e_stop="32799"/>
          <exon e_start="32497" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226997" ref_strand="-" ref_description="SGN-E226997 [cLED-1-B6]">
      <seq>cttaagaagctgacttatgaagagaggaaagctaagttgatcgaaagactcaatgctttgaacgcagctggtgcaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccatgttgccttaaggttttctattaatattgtttttcttgtgctacttggtagaaacctcagttttgcatgcttagtagcatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32790" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32490" g_stop="32205" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="287" polyA_stop="304"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E226997" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226997" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32490" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>CTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAAAGACTCAATGCTTTGAACGCAGCTGGTGCAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCATGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTGTGCTACTTGGTAGAAACCTCAGTTTTGCATGCTTAGTAGCATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227999" ref_strand="+" ref_description="SGN-E227999 [cLEL-39-O15](-)">
      <seq>gtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttagcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32686" stop="31900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32386" g_stop="32205" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="183" polyA_stop="200"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E227999" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32386" e_stop="32205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTT</genome_strand>
        <mrna_strand>GTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356868" ref_strand="+" ref_description="SGN-E356868 [cTOS-22-A12]">
      <seq>agcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatatttttgcttcaggcatctattccattgagttttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33123" stop="31906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32823" g_stop="32799" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32206" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="317" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E356868" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32823" e_stop="32799"/>
          <exon e_start="32497" e_stop="32206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACT</genome_strand>
        <mrna_strand>AGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603466" ref_strand="-" ref_description="SGN-E603466 [56556]">
      <seq>gttcttcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaactactttgaatccttgttgccttaaggttttcaattaatattgtgtttcttttgccatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttgcttcaggcatctattccattgagttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34271" stop="31907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33971" g_stop="33924" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="166" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="301" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="471" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32497" g_stop="32207" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="740" r_length="269" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E603466" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603466" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33971" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTC-TCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAAC</genome_strand>
        <mrna_strand>GTTCTTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAACTACTTTGAATCCTTGTTGCCTTAAGGTTTTCAATTAATATTGTGTTTC---T--T--T---T-G------C-------CATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616160" ref_strand="-" ref_description="SGN-E616160 [65966]">
      <seq>cgtgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgacgacgacgacgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctatttatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttacttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33154" stop="31932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32854" g_stop="32799" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32226" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="330" r_length="274" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E616160" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616160" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32854" e_stop="32799"/>
          <exon e_start="32497" e_stop="32226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAAT---GATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATC</genome_strand>
        <mrna_strand>CGTGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGACGACGACGACGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTTATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTATATTTTTACTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586626" ref_strand="+" ref_description="SGN-E586626 [75459]">
      <seq>ggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgacgacgacgacgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctatttatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttacttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33127" stop="31932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32827" g_stop="32799" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32231" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="298" r_length="269" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="308"/>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E586626" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32827" e_stop="32799"/>
          <exon e_start="32497" e_stop="32231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGA---TGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAG</genome_strand>
        <mrna_strand>GGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGACGACGACGACGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTTATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTATATTTTTACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357301" ref_strand="+" ref_description="SGN-E357301 [cTOS-23-A2]">
      <seq>tttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatgaggaagacgacgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaattgtatgggattatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33266" stop="31940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32966" g_stop="32799" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32497" g_stop="32240" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="426" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E357301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32966" e_stop="32799"/>
          <exon e_start="32497" e_stop="32240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTT</genome_strand>
        <mrna_strand>TTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAATTGTATGGGATTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589024" ref_strand="-" ref_description="SGN-E589024 [42590]">
      <seq>tgctagtattgctgggtgacatggatttcttgtctttctgcttaatgcaaagcgagtttgccttcattttgggacttaaaagttggaattgacgaacttatgctggctgcatactggtaccggactttctctttggcaaggcgagttctcaagaagctttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtggctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgcgcagacccatgcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctattaatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgacaatgtatgggattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34315" stop="31944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34123" g_stop="34094" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="109" r_length="33" r_score="0.733"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="193" r_length="84" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="311" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="446" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="616" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32244" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="872" r_length="256" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E589024" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589024" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34123" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTGG-ATTGACAAAC-TATGCT-GCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACT-GTACCGGAC-TTCTC-TTGGCAAGGCGAGTTCTCAAGAAGC-TTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGT-GCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTAT</genome_strand>
        <mrna_strand>TAAAAGTTGGAATTGACGAACTTATGCTGGCTG..........................................................................................CATACTGGTACCGGACTTTCTCTTTGGCAAGGCGAGTTCTCAAGAAGCTTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGCGCAGACCCATGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC-AATGTATGGGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595782" ref_strand="-" ref_description="SGN-E595782 [39061]">
      <seq>catttggacttaaattgggattgacgaaactatgctgttgcatacttgtacccggacttcttttggcaaaaggcgagttcttcaagaagcttgaaaatggatgaagtatattcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgacgacgacgacgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgccttaaggttttctatttatattgtttttcttttgctactaggtagaaacctcagttttgcatgcttagtagaatgagacttgtcaattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34278" stop="31960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34133" g_stop="34094" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="127" r_length="87" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.85"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="244" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="379" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="549" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="790" r_length="241" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E595782" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595782" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34133" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGGACTGAAAGTTGGATTGAC-AAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATAC-TGTAC-CGGACTTCTCTTGGC--AAGGCGAGTTC-TCAAGAAGCTTG-AAATGGATGAAGAATA-TCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAAT---GATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC</genome_strand>
        <mrna_strand>CATTT-GGACTTAAATTGGGATTGACGAAACTATGCTGTTG..........................................................................................CATACTTGTACCCGGACTTCTTTTGGCAAAAGGCGAGTTCTTCAAGAAGCTTGAAAATGGATGAAGTATATTCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGACGACGACGACGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTTATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451092" ref_strand="+" ref_description="SGN-E451092 [cSTS-11-O20]">
      <seq>gttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgcgcagacccatgcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgattgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaagaactttgaatccttgttgcctttaaggtttctattaatattgnntttcttttgctactaggtagaaacctcagttttgcatgcttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34308" stop="31983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34118" g_stop="34094" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="105" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="222" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="357" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="527" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32283" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="745" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E451092" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34118" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTA</genome_strand>
        <mrna_strand>GTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGCGCAGACCCATGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATTGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTTAAGGTTTCTATTAATATTGNNTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589021" ref_strand="-" ref_description="SGN-E589021 [42587]">
      <seq>aagtttggattgacgaattatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaactactttgaatccttgttgccttaaggttttcaattaatattgtgtttcttttgccatgcttagtagaatgagacttgtcaattttgacaatgtatgggattatatttttgcttcaggcatctattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34308" stop="31920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34121" g_stop="34094" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="108" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="225" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="360" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="530" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32320" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="711" r_length="181" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E589021" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589021" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34121" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTT</genome_strand>
        <mrna_strand>AAGTTTGGATTGACGAATTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAACTACTTTGAATCCTTGTTGCCTTAAGGTTTTCAATTAATATTGTGTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479624" ref_strand="+" ref_description="SGN-E479624 [cSTD-10-N17]">
      <seq>cttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaaccggagaggattacctccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagcccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagcntaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgacgatgaggaagacgatgattagtgaatttgtagaactactttgaatccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34289" stop="32081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33989" g_stop="33924" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="185" r_length="119" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="320" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="490" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32497" g_stop="32357" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="635" r_length="145" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E479624" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33989" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAA-TGGAGAGGACTA-CTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGC-TAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT---GACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTG</genome_strand>
        <mrna_strand>CTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACCGGAGAGGATTACCTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGCCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCNTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAACTACTTTGAATCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552981" ref_strand="+" ref_description="SGN-E552981 [cTSB-5-K18]">
      <seq>gaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgatgacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34844" stop="32103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34544" g_stop="34456" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="216" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="296" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="413" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="548" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="718" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32497" g_stop="32403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="813" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E552981" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34544" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATG</genome_strand>
        <mrna_strand>GAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707251" ref_strand="+" ref_description="SGN-E707251 [FA32BH09]">
      <seq>ccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgatcgagagactcaatgctttgaacgcagctggtggaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35902" stop="32110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="110" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="202" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="329" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="409" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="526" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="661" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="831" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32410" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="919" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E707251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT</genome_strand>
        <mrna_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729621" ref_strand="+" ref_description="SGN-E729621 [LA21CD07]">
      <seq>cgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaagtacaacccttagaagctgacttatgaagagaggaaagctaagttgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35895" stop="32148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35595" g_stop="35563" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="103" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="322" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="402" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="519" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="654" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="824" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32448" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="874" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E729621" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35595" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCG</genome_strand>
        <mrna_strand>CGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAA.............................................................................................................................................................................................................................................................................................................GTACAACCCTTAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703143" ref_strand="+" ref_description="SGN-E703143 [FA20CG01]">
      <seq>ctttaactcattccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggtctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagtgtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctccccagacacacaagaggtacaacccttagaagctgacttatgaagagaggaaagctaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35922" stop="32150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35622" g_stop="35563" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="130" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="222" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="349" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="546" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="681" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="851" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32450" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="899" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E703143" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35622" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGAT</genome_strand>
        <mrna_strand>CTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGTCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCCAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCCTTAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700878" ref_strand="+" ref_description="SGN-E700878 [FA14BF09]">
      <seq>cacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgttgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagctaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35907" stop="32150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35607" g_stop="35563" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="207" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="334" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="414" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="531" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="666" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="835" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32450" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="883" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E700878" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35607" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGAT</genome_strand>
        <mrna_strand>CACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGTTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCT-CCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703040" ref_strand="+" ref_description="SGN-E703040 [FA20BE12]">
      <seq>cacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaagtacaaccttaagaagctgacttatgaagagaggaagctaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35907" stop="32150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35607" g_stop="35563" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="207" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="334" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="414" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="531" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="666" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="836" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32450" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="883" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E703040" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35607" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGAT</genome_strand>
        <mrna_strand>CACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAA.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGG-AAGCTAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699997" ref_strand="+" ref_description="SGN-E699997 [FA11DC08]">
      <seq>cggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaaagcctagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35889" stop="32150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35589" g_stop="35563" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="97" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="316" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="396" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="513" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="648" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="818" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32450" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="866" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E699997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35589" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGAT</genome_strand>
        <mrna_strand>CGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCCTAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423703" ref_strand="+" ref_description="SGN-E423703 [STM-42-O6]">
      <seq>gttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgcgcagacccatgcccaaagaagtctggaaagcaacctccaagacacacaagaggtacaaccttaagaagctgacttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34308" stop="32171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34118" g_stop="34094" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="105" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="222" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="357" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="526" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32497" g_stop="32471" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="553" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E423703" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34118" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGACTTATGA</genome_strand>
        <mrna_strand>GTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGCGCAGACCCATGCCCAAAGAAGTCTGGAAAGCAACCT-CCAAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGACTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704462" ref_strand="+" ref_description="SGN-E704462 [FA24BE02]">
      <seq>gccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctccccagacacacaagaggtacaaccttaagaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="32178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="518" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="653" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="823" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32497" g_stop="32478" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="843" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E704462" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
          <exon e_start="32497" e_stop="32478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTCTGAAATTTCTATCCTTATTCAGCTTTATAGAAAATGATCATTAAAAAATGATAGAAGTTAAAATCATTAGGACAAAGCTGAAATTCATAGCTGCGCACTAGTGTTGTGTGATTTGTCCTAGTAGTCCCGTTCTTCATTTGCTTGAGCTGTAACTTGTTTTGATGCATTTCTGGAGGATCTTCATCTCTACTGATTATCTTGCTACATTACTGTCTGAACTACATAGTGCTTATATAGATGTGTCCTGACAGAAACTCCATCGCTTTCTAAACCATACTACTTGGGGGCTGTTCTGCAGGTACAACCTTAAGAAGCTGA</genome_strand>
        <mrna_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCCAGACACACAAGAG.............................................................................................................................................................................................................................................................................................................GTACAACCTTAAGAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720905" ref_strand="+" ref_description="SGN-E720905 [FC12AH01]">
      <seq>gggcgattggcggccaatcggccgaattactcattccccacagcccctagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctccccagacacacaagaggtacaacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35920" stop="32497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35615" g_stop="35563" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="83" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="153" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="245" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="372" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="452" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="569" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="704" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="874" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E720905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35615" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG</genome_strand>
        <mrna_strand>TCATTCCCCACAGCCCCTAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCCAGACACACAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706888" ref_strand="+" ref_description="SGN-E706888 [FA31AH05]">
      <seq>caagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacgacactccagaataccgcttccttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagccacctcccaagacacacaagaggtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35899" stop="32497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35599" g_stop="35563" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="107" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="199" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="326" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="406" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="523" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="658" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32799" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="828" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E706888" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35599" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG</genome_strand>
        <mrna_strand>CAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACGACACTCCAGAATACCGCTTCCTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCCACCTCCCAAGACACACAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726456" ref_strand="+" ref_description="SGN-E726456 [LA11DE01]">
      <seq>ccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctcccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35908" stop="32510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35608" g_stop="35563" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="116" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="208" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="335" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="415" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="532" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="667" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32810" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="826" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E726456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35608" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAG</genome_strand>
        <mrna_strand>CCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724402" ref_strand="+" ref_description="SGN-E724402 [FC24AA09]">
      <seq>gcgattggcggccaatcggccgaattgattccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtccaaagaagtctggaaagcaacctccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35918" stop="32512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="78" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="148" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="240" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="367" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="447" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="564" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="699" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32812" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="856" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E724402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCA</genome_strand>
        <mrna_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452097" ref_strand="+" ref_description="SGN-E452097 [cSTS-15-L7]">
      <seq>tatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgattcactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaagaaagttcatgctgccatacgcgcagacccatgcccaaagaagtctggaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34833" stop="32519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34533" g_stop="34456" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="205" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="285" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="402" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="537" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32968" g_stop="32819" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="687" r_length="150" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E452097" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34533" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAA</genome_strand>
        <mrna_strand>TATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTC...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAAGTTCATGCTGCCATACGCGCAGACCCATGCCCAAAGAAGTCTGGAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708684" ref_strand="+" ref_description="SGN-E708684 [FA36CA03]">
      <seq>caatcgccggcggaggcttaatcgactaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctctttgatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgacggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagacccaagtcccaagaagtctggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35899" stop="32522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35599" g_stop="35563" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="107" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="199" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="326" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="406" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="523" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="658" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32822" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="805" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E708684" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35599" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAG</genome_strand>
        <mrna_strand>CAATCGCCGGCGGAGGCTTAATCGACTAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTTGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGACGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCCAAGAAGTCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260723" ref_strand="+" ref_description="SGN-E260723 [cLEG-54-D6]">
      <seq>cgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgaggagatgtacaaaaaggttcatgctgccatacgcgcagaccaaagtccaaagaagtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35013" stop="32526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="85" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="177" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="304" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="384" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="501" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="636" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32826" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="779" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E260723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCAAAGTCCAAAGAAGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579072" ref_strand="+" ref_description="SGN-E579072 [86196]">
      <seq>cttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgaattggcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtacaagaaggttcatgctgccatacgtgcagacccaagtccaaagaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="91" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="183" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="311" r_length="128" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="391" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="508" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="643" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="784" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E579072" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTT-GCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAATTGGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGTCCAAAGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260563" ref_strand="+" ref_description="SGN-E260563 [cLEG-54-J7]">
      <seq>tttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacaatcttgangagatgtacaaaaaggttcatgctgccatacgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34816" stop="32550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34516" g_stop="34456" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="188" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="268" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="385" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="520" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32968" g_stop="32850" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="639" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E260563" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34516" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGC</genome_strand>
        <mrna_strand>TTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGANGAGATGTACAAAAAGGTTCATGCTGCCATACGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451357" ref_strand="+" ref_description="SGN-E451357 [cSTS-12-B13]">
      <seq>atcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtcttgaggcagacatcttgaggagatgtacaagaaggttcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="179" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="306" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="386" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="503" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="638" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32860" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="746" r_length="108" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E451357" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGAC-ATCTTGAGGAGATGTACAAGAAGGTTCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300176" ref_strand="+" ref_description="SGN-E300176 [cLEW-17-E1]">
      <seq>ttaagaactactacagggaaccgagtgtttggtgctctcaatggtgcattggatggagggattgacatccctcatatcgagaagaggtttgctggatacagcaaggactctaagcaactctatgcataagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaagcgggtcttgaggcagacaatcttgaggagatgtacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34056" stop="32573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33756" g_stop="33715" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="177" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32968" g_stop="32873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="273" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E300176" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33756" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAA</genome_strand>
        <mrna_strand>TTAAGAACTACTACAGGGAACCGAGTGTTTGGTGCTCTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGAGGGATTGACATCCCTCATATCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCTATGCATAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAAGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561919" ref_strand="+" ref_description="SGN-E561919 [20337]">
      <seq>ggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtcttgaggcagacaatcttgaggagatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="93" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="185" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="312" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="392" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="509" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="644" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32875" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="738" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E561919" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573320" ref_strand="+" ref_description="SGN-E573320 [32613]">
      <seq>cgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagacatatcagacaccacttcagcttatacatcaagtcgggtcttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35895" stop="32601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35595" g_stop="35563" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="103" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="322" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="402" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="519" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="654" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32899" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="725" r_length="71" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E573320" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35595" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACA-CACTTCAGCTTATACATCAAGGCGGGTCTTGAGG</genome_strand>
        <mrna_strand>CGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGACATATCAGACACCACTTCAGCTTATACATCAAGTCGGGTCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467076" ref_strand="+" ref_description="SGN-E467076 [cPRO-26-P24]">
      <seq>ggcacgaggcacagccccaagcgccggcggaggcttaatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35907" stop="32603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="54" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="124" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="216" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="343" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="423" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="540" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="675" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32903" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="741" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E467076" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTT</genome_strand>
        <mrna_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332431" ref_strand="+" ref_description="SGN-E332431 [cTOD-17-O16]">
      <seq>cccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgncagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35901" stop="32604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35601" g_stop="35563" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="660" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32904" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="725" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E332431" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35601" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCT</genome_strand>
        <mrna_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGNCAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601058" ref_strand="+" ref_description="SGN-E601058 [54084]">
      <seq>acaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttcgaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaagtcgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="79" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="171" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="298" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="378" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="495" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="630" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32906" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="693" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E601058" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCGAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGTCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561244" ref_strand="+" ref_description="SGN-E561244 [17206]">
      <seq>cagcccaagcgccggcgggaggcttaatcgacgaacaacaaatgggcttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggctcttgagaactaccacagggcaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagttatacatcaagtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35905" stop="32608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35605" g_stop="35563" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="114" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="206" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="333" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="530" r_length="117" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="665" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32908" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="725" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E561244" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35605" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCCAAGCGCCGGC-GGAGGCTTAATCGACGAACAGC-AATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGG-AACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGG</genome_strand>
        <mrna_strand>CAGCC-CAAGCGCCGGCGGGAGGCTTAATCGACGAACAACAAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGG-CTCTTGAGAACTACCACAGGGCAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAG-TTATACATCAAGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368437" ref_strand="-" ref_description="SGN-E368437 [TUS-23-H17](-)">
      <seq>ctagttctccttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacatcaaggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35883" stop="32608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35584" g_stop="35563" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="30" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="192" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="319" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="399" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="516" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="651" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32908" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="712" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E368437" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368437" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35584" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGG</genome_strand>
        <mrna_strand>CCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572062" ref_strand="+" ref_description="SGN-E572062 [31156]">
      <seq>gcgccggcggaggcttaatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagnttatacatcaagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35896" stop="32609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35596" g_stop="35563" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="104" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="196" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="323" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="403" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="520" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="655" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32909" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="715" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E572062" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35596" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCG</genome_strand>
        <mrna_strand>GCGCCGGCGGAGGCTTAATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGNTTATACATCAAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601141" ref_strand="+" ref_description="SGN-E601141 [54170]">
      <seq>cgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcaacttatacatcaaagtcagggtcttgaaggcagcacaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35895" stop="32589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35595" g_stop="35563" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="103" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="322" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="402" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="519" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="654" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32912" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="711" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E601141" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35595" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAG</genome_strand>
        <mrna_strand>CGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAACTTATACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558496" ref_strand="+" ref_description="SGN-E558496 [17845]">
      <seq>cgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagaatgaactgagacacatcagacacacttcagnttatacatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35895" stop="32613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35595" g_stop="35563" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="103" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="322" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="402" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="519" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="654" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32913" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="710" r_length="56" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E558496" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35595" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAA</genome_strand>
        <mrna_strand>CGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGAATGAACTGAGACACATCAGACACACTTCAGNTTATACATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320519" ref_strand="+" ref_description="SGN-E320519 [cTOB-22-K7]">
      <seq>agaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacacttcagcttatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34993" stop="32616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34693" g_stop="34640" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="146" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="273" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="353" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="470" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="605" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32916" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="658" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E320519" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34693" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACAT</genome_strand>
        <mrna_strand>AGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579390" ref_strand="+" ref_description="SGN-E579390 [87373]">
      <seq>cttcacctcattccccacagccccaagcgccggcggaggcttaatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaatatcagacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35922" stop="32630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35622" g_stop="35563" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="130" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="222" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="349" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="546" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="681" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32930" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="720" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E579390" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35622" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACAC</genome_strand>
        <mrna_strand>CTTCACCTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304071" ref_strand="+" ref_description="SGN-E304071 [cLEX-6-B1]">
      <seq>aaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctattggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcttgtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctgagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34799" stop="32642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34499" g_stop="34456" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="171" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="251" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="368" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="503" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32968" g_stop="32941" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="531" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E304071" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34499" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAAT</genome_strand>
        <mrna_strand>AAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTATTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCTTGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693273" ref_strand="+" ref_description="SGN-E693273 [LH_Ea10O07]">
      <seq>ccggtacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctgaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggtctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactcctagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35906" stop="32647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35715" g_stop="35707" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35706" i_stop="35603" i_length="104">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.437" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="49" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="119" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="211" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="338" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="418" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="535" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="670" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32968" g_stop="32947" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="692" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E693273" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35715" e_stop="35707"/>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACAGGTGAACATTTCATGATTGGCCCATTAGGGTTTCGTTAGGTATTTTAGCTTCATATTAGTAGTGTTTTTCTCACACAAGCTTCTTCTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTG</genome_strand>
        <mrna_strand>CCGGTACAG........................................................................................................CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTGAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGTCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCCTAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483338" ref_strand="+" ref_description="SGN-E483338 [cSTE-9-A9]">
      <seq>cagccccaagcgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35905" stop="32647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35605" g_stop="35563" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="113" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="205" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="332" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="529" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="664" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32947" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="686" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E483338" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35605" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTG</genome_strand>
        <mrna_strand>CAGCCCCAAGCGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343717" ref_strand="+" ref_description="SGN-E343717 [cTOF-20-N13]">
      <seq>aagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35898" stop="32647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35598" g_stop="35563" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="106" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="198" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="325" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="405" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="522" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="657" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32947" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="679" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E343717" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35598" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTG</genome_strand>
        <mrna_strand>AAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456825" ref_strand="+" ref_description="SGN-E456825 [cSTS-30-L13]">
      <seq>catcgacgaacaacaatggccttcatcaaagtccagaagaccagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgattcactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtgggccacgtactgcttatatgaatactttgatggaagatgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="88" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="180" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="307" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="387" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="504" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="639" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32947" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="661" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E456825" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGT-GGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACCAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTC...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGGCCACG-TACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437501" ref_strand="+" ref_description="SGN-E437501 [cSTA-4-A5]">
      <seq>cacagccccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttgatggaagatgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="207" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="334" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="414" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="531" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="666" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32948" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="687" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E437501" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603945" ref_strand="+" ref_description="SGN-E603945 [67135]">
      <seq>caagcgccggcggaggcttaatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggcatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccggaaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35899" stop="32649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35599" g_stop="35563" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="107" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="199" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="326" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="406" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="523" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="660" r_length="137" r_score="0.948"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32949" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="680" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E603945" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35599" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGG-ATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACC-GCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACC</genome_strand>
        <mrna_strand>CAAGCGCCGGCGGAGGCTTAATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGCATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGGAAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454594" ref_strand="+" ref_description="SGN-E454594 [cSTS-23-F24]">
      <seq>cgccggcggaggcttaatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggattactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgatggaagatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35895" stop="32649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35595" g_stop="35563" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="103" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="322" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="402" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="519" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="654" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32949" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="674" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E454594" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35595" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACC</genome_strand>
        <mrna_strand>CGCCGGCGGAGGCTTAATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGATTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGATGGAAGATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317937" ref_strand="+" ref_description="SGN-E317937 [cTOA-30-A16]">
      <seq>ccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggantggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttgctgcttatatgaatactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35900" stop="32820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35600" g_stop="35563" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="108" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="200" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="327" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="407" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="524" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="660" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32961" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="668" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E317937" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35600" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGA-TGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGAT</genome_strand>
        <mrna_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGANTGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570470" ref_strand="+" ref_description="SGN-E570470 [15060]">
      <seq>aagcgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtgggcacgttgctgcttatatgaatactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35898" stop="32820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35598" g_stop="35563" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="106" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="198" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="325" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="405" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="522" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="657" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32968" g_stop="32961" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="665" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E570470" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35598" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGAT</genome_strand>
        <mrna_strand>AAGCGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGGCACGTTGCTGCTTATATGAAT.......................................................................................................................................................ACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455637" ref_strand="+" ref_description="SGN-E455637 [cSTS-26-J16]">
      <seq>cccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagaccagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgattcactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtggggattgacatccctcatagtgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtggccacgttactgcttatatgaatactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33120" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="661" r_length="136" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32968" g_stop="32963" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="667" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E455637" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33120"/>
          <exon e_start="32968" e_stop="32963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGT-GGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATGTGAGACATAGAAGTGCTTTAGATTGATTCTTTTGTAATTTAAGTAGAATCTTCCATGGTAGGGAGGGGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACCAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTC...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTACTGCTTATATGAAT.......................................................................................................................................................ACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604429" ref_strand="+" ref_description="SGN-E604429 [74564]">
      <seq>aggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactagcacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgagatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34963" stop="32843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34663" g_stop="34640" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="116" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="243" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="323" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="440" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33143" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="552" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E604429" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34663" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTG</genome_strand>
        <mrna_strand>AGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTAGCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGAGATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322545" ref_strand="+" ref_description="SGN-E322545 [cTOB-26-L23]">
      <seq>acagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaagtatatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35906" stop="32846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35606" g_stop="35563" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="114" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="206" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="333" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="530" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33146" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="639" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E322545" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35606" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATG</genome_strand>
        <mrna_strand>ACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463079" ref_strand="+" ref_description="SGN-E463079 [cPRO-13-F5]">
      <seq>caaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagaccagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgattcactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagagtttgctggatacagcaaggactctaagcaactcgatgcagaagttcaccgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="107" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="199" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="326" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="406" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="523" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="621" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E463079" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACCAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTC...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGA-GTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569816" ref_strand="+" ref_description="SGN-E569816 [14305]">
      <seq>cacagccccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagactnaggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttgggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagcaggattactccggttgaacctgctgaaagcaggaggcctttccgtgctctcttgggacgtcggcctcttgaggaactaccacaggggaaccgtggttttggtgctctcaagggtgcgttggatggtgggatcgacatccctcatagtgagaaaaggtttggtggatacagcaaaggactctaagcaactcgatgcagaagttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="207" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="335" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="416" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="538" r_length="122" r_score="0.855"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33162" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="632" r_length="94" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E569816" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACA-AGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTT-GGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAG-AGGACTACT-CTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTT-GGATGTCGGCCTCTT-AAGAACTACTACA-GGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGC-AAGGACTCTAAGCAACTCGATGCAGAAGTTCAC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTNAGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGCAGGATTACTCCGGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGGACGTCGGCCTCTTGAGGAACTACCACAGGGGAACCGTGGTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGTTGGATGGTGGGATCGACATCCCTCATAGTGAGAAAAGGTTTGGTGGATACAGCAAAGGACTCTAAGCAACTCGATGCAGAAGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327675" ref_strand="+" ref_description="SGN-E327675 [cTOC-20-P8]">
      <seq>ggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaaggactctagcaactcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35888" stop="32873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35588" g_stop="35563" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="96" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="188" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="315" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="395" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="512" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33173" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="594" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E327675" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35588" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGC-AAGGACTCTAAGCAACTCGATG</genome_strand>
        <mrna_strand>GGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAAGGACTCT-AGCAACTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599759" ref_strand="+" ref_description="SGN-E599759 [52754]">
      <seq>cacttcattccccacagccccaagcgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcatcaggacaaaaacaagtacaacactccaaaatacccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgttttaaggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaaactcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35917" stop="32874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35619" g_stop="35563" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="127" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="219" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="346" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="426" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="544" r_length="118" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33174" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="626" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E599759" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35619" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATA-CCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTT-TGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGC-AACTCGAT</genome_strand>
        <mrna_strand>CACTTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATC-ATCAGGACAAAAACAAGTACAACACTCCAAAATACCCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTAAGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAAACTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266056" ref_strand="+" ref_description="SGN-E266056 [cLEI-6-K11]">
      <seq>aacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggactctaagcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35013" stop="32877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="80" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="172" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="299" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="379" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="496" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33177" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="574" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E266056" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337360" ref_strand="+" ref_description="SGN-E337360 [cTOE-18-O12]">
      <seq>gccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgagaagaggtttgctggatacagcaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35903" stop="32889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35603" g_stop="35563" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="111" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="203" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="330" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="410" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="527" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33189" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="593" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E337360" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35603" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGAC</genome_strand>
        <mrna_strand>GCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373899" ref_strand="+" ref_description="SGN-E373899 [TUS-31-O4]">
      <seq>ccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcacgacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcgggctcttaagaactactacagggaaccgtgtgtttggtgctctcacgggtgcattggatggtgggattgacatacctcatagcgagaagaggcttgctggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35900" stop="32898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35600" g_stop="35563" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="108" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="200" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="327" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="407" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="524" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33198" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="581" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E373899" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35600" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATAC</genome_strand>
        <mrna_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCACGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGGCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATACCTCATAGCGAGAAGAGGCTTGCTGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446729" ref_strand="+" ref_description="SGN-E446729 [cSTA-22-D2]">
      <seq>cccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaaccaagtaccacactccaaaataccgtttcgttgttcgatttactaacagggaccataattgcacaaattgtgtctgctagtattgctggtgaccatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctcatagtgagaagaggtttgctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="202" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.341" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="331" r_length="129" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="411" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="528" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33199" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="584" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E446729" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAA-CAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGA-CATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGA-CATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACCAAGTACCACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACCATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACCATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGTGAGAAGAGGTTTGCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342421" ref_strand="+" ref_description="SGN-E342421 [cTOF-8-O9]">
      <seq>ccaagcgccggcggaggctgaatcgacgaacaggtaatggccttcatcaaagtgcagaagacaagggcttacttcaagcgtgaccaggttaaattcaagagaaggagatagggaaagactgactacagagccaggaatcgttagatcaatcaggacaaaaacaaggacaacactgcaaaataccgcttcgttgttcgatttactaacatggacgtagatacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggctgaagaatatcaaggaaatcttgatgtcaacggagaggactactctgttgaacctgctgaaagcaagaggcctttccgcgctctcttggacgtcagcctcttaagaactactactgggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacattcctcatagcgagaagaggtatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35900" stop="32903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35600" g_stop="35563" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33203" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="577" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E342421" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35600" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACA-GCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTG</genome_strand>
        <mrna_strand>CCAAGCGCCGGCGGAGGCTGAATCGACGAACAGGTAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTGCAGAAGACAAGGGCTTACTTCAAGCGTGACCAGGTTAAATTCAAGAGAAGGAGAT............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTAGATCAATCAGGACAAAAACAAGGACAACACTGCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACATGGACGTAGATACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGCTGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAAGAGGCCTTTCCGCGCTCTCTTGGACGTCAGCCTCTTAAGAACTACTACTGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATTCCTCATAGCGAGAAGAGGTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561936" ref_strand="+" ref_description="SGN-E561936 [20487]">
      <seq>cagccccaagcgccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttgagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggatcgacatccctcatagcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35905" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35605" g_stop="35563" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="113" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="205" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="332" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="529" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="569" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E561936" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35605" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>CAGCCCCAAGCGCCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207899" ref_strand="+" ref_description="SGN-E207899 [cLEC-34-I20]">
      <seq>ccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35900" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35600" g_stop="35563" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="108" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="200" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="327" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="407" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="524" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="564" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E207899" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35600" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287937" ref_strand="+" ref_description="SGN-E287937 [cLES-7-G11]">
      <seq>aagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatagcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35898" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35598" g_stop="35563" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="106" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="198" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="325" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="405" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="522" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="562" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E287937" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35598" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>AAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312722" ref_strand="+" ref_description="SGN-E312722 [cTOA-8-M9]">
      <seq>tcacgtccgccggcggaggttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcctttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattcctcacagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="0.825"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="565" r_length="40" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E312722" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCCTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313908" ref_strand="+" ref_description="SGN-E313908 [cTOA-17-N12]">
      <seq>ttccccctcacgtccgccggcggaggttaatcgagaagaagcaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgtttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattcctcacagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35018" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="116" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="208" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="335" r_length="127" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="415" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="532" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="572" r_length="40" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E313908" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGTTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271678" ref_strand="+" ref_description="SGN-E271678 [cLEM-23-D15]">
      <seq>gttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattcctcacagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="91" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="183" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="310" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="390" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="507" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="547" r_length="40" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E271678" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312441" ref_strand="+" ref_description="SGN-E312441 [cLEZ-20-G24]">
      <seq>gtccgccggcggaggttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattcctcacagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="197" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="324" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="404" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="521" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="561" r_length="40" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E312441" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E199991" ref_strand="+" ref_description="SGN-E199991 [cLEB-9-C1]">
      <seq>gcacgaggcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctcttaagggtgcattggatggtgggattgacatccctcatagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35903" stop="32916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35603" g_stop="35563" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="111" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="203" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="330" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="410" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="527" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33216" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="566" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E199991" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E199991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35603" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAG</genome_strand>
        <mrna_strand>GCACGAGGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271677" ref_strand="+" ref_description="SGN-E271677 [cLEM-23-D13]">
      <seq>gttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattcctcacagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="91" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="183" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="310" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="390" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="507" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33216" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="546" r_length="39" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E271677" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346137" ref_strand="+" ref_description="SGN-E346137 [cTOF-34-O5]">
      <seq>ccacttccccctcacgtccgccggcggaggttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattcctcacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="120" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="212" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="339" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="419" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="535" r_length="116" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33217" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="573" r_length="38" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E346137" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGA</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAG-ACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270441" ref_strand="+" ref_description="SGN-E270441 [cLEM-1-O14]">
      <seq>gcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaagaaacccnaaannaggnntttttantcccnnaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35884" stop="32920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35584" g_stop="35563" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="92" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34493" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="147" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34492" i_stop="34411" i_length="82">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.603" a_score="0.40"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34410" g_stop="34353" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="205" r_length="58" r_score="0.397"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34352" i_stop="34221" i_length="132">
            <donor d_prob="0.000" d_score="0.40"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="332" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="529" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33254" g_stop="33220" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="564" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E270441" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35584" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34493"/>
          <exon e_start="34410" e_stop="34353"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCATAG</genome_strand>
        <mrna_strand>GCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAGAAACC..................................................................................CNAAANNAGGNNTTTTTANTCCCNNAACACTCCAAAATACCGTTTCGTTGTTCGATTT....................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299425" ref_strand="+" ref_description="SGN-E299425 [cLET-43-O22]">
      <seq>agccccaagcgccggcggaggcttaatctacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35904" stop="32922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35604" g_stop="35563" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="112" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="204" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="331" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="411" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="528" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33222" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="561" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E299425" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35604" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCAT</genome_strand>
        <mrna_strand>AGCCCCAAGCGCCGGCGGAGGCTTAATCTACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308759" ref_strand="+" ref_description="SGN-E308759 [cLEZ-11-G18]">
      <seq>gccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaagaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaaaggtgcattggatggtgggatagacatccctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35903" stop="32922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35603" g_stop="35563" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="111" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="203" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="330" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="410" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="527" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33222" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="560" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E308759" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35603" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCAT</genome_strand>
        <mrna_strand>GCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAAGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATAGACATCCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302079" ref_strand="+" ref_description="SGN-E302079 [cLEW-19-K3]">
      <seq>tcaaagtccagaagacaaaggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaaaggtgcattggatggtgggattgacatccctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35002" stop="32922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34702" g_stop="34640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="155" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="282" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="362" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="479" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33222" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="512" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E302079" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34702" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTCAT</genome_strand>
        <mrna_strand>TCAAAGTCCAGAAGACAAAGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721545" ref_strand="+" ref_description="SGN-E721545 [FC14BA03]">
      <seq>tggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgcttcgttgttcgatttactaacaaggacataattacacaaattgtgtctgctagtattgctggtgacattattcttgcttctgcttatgcaagcgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttaagaactactacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattgacatccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34711" g_stop="34640" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="164" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="291" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="371" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="488" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33224" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="519" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E721545" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34711" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCCTC</genome_strand>
        <mrna_strand>TGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATTATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310921" ref_strand="+" ref_description="SGN-E310921 [cLEZ-17-H1]">
      <seq>ccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35902" stop="32926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="110" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="202" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="329" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="409" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="526" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33226" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="555" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E310921" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCCC</genome_strand>
        <mrna_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315977" ref_strand="+" ref_description="SGN-E315977 [cTOA-23-A17]">
      <seq>tcacgtccgccggcggaggttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgtttttggtgctctcaagggtgcattggatggtggacttgatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="32929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33254" g_stop="33227" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="553" r_length="28" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E315977" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACATCC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGACTTGATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295199" ref_strand="+" ref_description="SGN-E295199 [cLET-20-D10]">
      <seq>gccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="32930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="518" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33230" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="543" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E295199" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGACA</genome_strand>
        <mrna_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271288" ref_strand="+" ref_description="SGN-E271288 [cLEM-5-L1]">
      <seq>gcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatggtgggattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35884" stop="32931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35584" g_stop="35563" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="92" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="184" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="311" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="391" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="508" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33231" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="532" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E271288" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35584" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGAC</genome_strand>
        <mrna_strand>GCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487749" ref_strand="+" ref_description="SGN-E487749 [cSTE-26-B5]">
      <seq>attccccacagccccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttggtgctctcaagggtgcattggatggtgggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35913" stop="32932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35613" g_stop="35563" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="121" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="213" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="340" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="420" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="537" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33254" g_stop="33232" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="560" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E487749" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35613" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
          <exon e_start="33254" e_stop="33232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAGGTATCAACCTTCTTTTGCTGTTGGTTCCTTGTCTGAGTTAAAGTCTATACGATGCGCCCCAGATTGCTAAATTTTTTCTTTTAATTGAAATTTTTTGTTTGTGAACAATATCGTATACTTTCTGTGAGTTGTTGCTTGAATGGTTCTTTTATTAGCTATAACTTCAACGTGAAGAACATTTGCAAGATTATTTTGATCTCTGAGAAACTCAAACTTTGTTCAAGTCTCCTAAGTATGGTTGGGGCTGTTGGGTAGATCTTGTAGTAATTCTTCTCTTTGAGGACCATGTATTCCTTCATTTTATTATTTAAGGTGCATTAAACAATAAACTGTATCTGCAACATTTTTTCTTGGTTTCAGGGTGCATTGGATGGTGACATATTAGTTATGCATTAATCATGTCATGTGACATTTAACTGTGGCTTATCAGTGTTGTTGAATATTTGTTTCTTTGACTCAGGGTGCATTGGATGGTGGGATTGA</genome_strand>
        <mrna_strand>ATTCCCCACAGCCCCAAACGCCGGCGGAGGCTTCATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGATGGTGGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341840" ref_strand="+" ref_description="SGN-E341840 [cTOF-9-J3]">
      <seq>tcattccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacaaggaaccgtgtgtttggtgctctcaagggtgcattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35915" stop="33414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35615" g_stop="35563" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="123" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="215" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="342" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="422" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="539" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E341840" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35615" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG</genome_strand>
        <mrna_strand>TCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAAGGAACCGTGTGTTTGGTGCTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391138" ref_strand="+" ref_description="SGN-E391138 [TUS-47-D4]">
      <seq>attccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35913" stop="33414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35613" g_stop="35563" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="121" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="213" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="340" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="420" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="537" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E391138" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35613" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG</genome_strand>
        <mrna_strand>ATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338565" ref_strand="+" ref_description="SGN-E338565 [cTOE-15-O13]">
      <seq>cccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35901" stop="33414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35601" g_stop="35563" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E338565" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35601" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG</genome_strand>
        <mrna_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252031" ref_strand="+" ref_description="SGN-E252031 [cLEG-8-K14]">
      <seq>gccggcggaggcttaatcgacgaacagcaatggccttcatggaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgcattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="33414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="518" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E252031" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG</genome_strand>
        <mrna_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATGGAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279613" ref_strand="+" ref_description="SGN-E279613 [cLER-5-C17]">
      <seq>gccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtgtttggtgctctcaagggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="33414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33715" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="518" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E279613" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG</genome_strand>
        <mrna_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTGTTTGGTGCTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450240" ref_strand="+" ref_description="SGN-E450240 [cSTS-8-F8]">
      <seq>cccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagactaccacagggaaccgtgtttttggtgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33718" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="521" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E450240" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAG-ACTACCACAGGGAACCGTGTTTTTGGTGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441468" ref_strand="+" ref_description="SGN-E441468 [cSTA-30-B13]">
      <seq>ttccccctcacggccgccggcggaggctaatcgaggagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagactatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatgaaggaaaccttgaggtcaatggggaggattactccgttgaacctgctgaaagcagaaggcctttccgtgctctcttggatgttggccttttgaggactactacaggaaatcgtgtttttggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="116" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="208" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="335" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="415" r_length="80" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33719" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="528" r_length="113" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E441468" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGACTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATGAAGGAAACCTTGAG............................................................................................GTCAATGGGGAGGATTACTCCGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTTTGAGGACTACTACAGGAAATCGTGTTTTTGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446199" ref_strand="+" ref_description="SGN-E446199 [cSTA-20-E14]">
      <seq>ccacttccccctcacggccgccggcggaggctaatcgaggagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagactatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatgaaggaaaccttgaggtcaatggggaggattactccgttgaacctgctgaaagcagaaggcctttccgtgctctcttggatgttggccttttgaggactactacaggaaatcgtgtttttggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="120" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="212" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="339" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="419" r_length="80" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33719" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="532" r_length="113" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E446199" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGACTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATGAAGGAAACCTTGAG............................................................................................GTCAATGGGGAGGATTACTCCGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTTTGAGGACTACTACAGGAAATCGTGTTTTTGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335568" ref_strand="+" ref_description="SGN-E335568 [cTOE-2-D18]">
      <seq>aatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacaaggaaccgtgtgtttggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="74" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="166" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="293" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="373" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33719" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="486" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E335568" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAAGGAACCGTGTGTTTGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258757" ref_strand="+" ref_description="SGN-E258757 [cLEG-50-C10]">
      <seq>ggaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaaacaagaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaacgtgtgtttggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34856" stop="33419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34649" g_stop="34640" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="102" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="229" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="309" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33719" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="422" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E258757" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34649" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCT</genome_strand>
        <mrna_strand>GGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAACAAGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAAACGTGTGTTTGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456843" ref_strand="+" ref_description="SGN-E456843 [cSTS-30-P3]">
      <seq>gccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagaccagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgattcactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactaccacagggaaccgtgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33726" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="507" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E456843" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACCAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTC...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACCACAGGGAACCGTGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301555" ref_strand="+" ref_description="SGN-E301555 [cLEW-23-D9]">
      <seq>gaattcggcacgaggcggaggttaatcgagaagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggttaaattcaagagaaggagagaggggaaaacagattacagagccaggaatcgcttgatcaatcaggacaaaaataagtacaacactcctaaatatcgtttggttgtccgatttactaacaaggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcctctgcttatgctaacgagctgcctcgttatggcctagaagttggactgactaattatgctgctgcctactgcactggacttcttttggcaaggagagttcttaaaaagcttgaaatggatgaggagtatgaagggaaccttgaggtcaatggggaggactactctgttgaacctgctgaaagcagaaggcctttccgagctctcttggatgttggccttctaagaactactacaggaaatcgtgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="111" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="203" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="330" r_length="127" r_score="0.898"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="410" r_length="80" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33727" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="515" r_length="105" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E301555" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTACAGAGCCAGGAATCGCTTGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAG............................................................................................GTCAATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAAATCGTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226998" ref_strand="-" ref_description="SGN-E226998 [cLED-1-B6](-)">
      <seq>ctagttctccttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactacagggaaccgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35883" stop="33431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35584" g_stop="35563" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="30" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="192" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="319" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="399" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33730" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="501" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E226998" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226998" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35584" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTT</genome_strand>
        <mrna_strand>CCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336321" ref_strand="+" ref_description="SGN-E336321 [cTOE-10-F13]">
      <seq>gacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcgggctcttaagaactactacagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34511" stop="33437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34211" g_stop="34094" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="198" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33831" g_stop="33737" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="293" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E336321" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34211" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAA</genome_strand>
        <mrna_strand>GACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGGCTCTTAAGAACTACTACAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270714" ref_strand="+" ref_description="SGN-E270714 [cLEM-6-H15]">
      <seq>tttaactcattccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35921" stop="33442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35621" g_stop="35563" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="129" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="221" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="348" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="428" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33742" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="518" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E270714" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35621" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACA</genome_strand>
        <mrna_strand>TTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286733" ref_strand="+" ref_description="SGN-E286733 [cLES-14-L7]">
      <seq>gccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="33442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33742" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="491" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E286733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACA</genome_strand>
        <mrna_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442521" ref_strand="+" ref_description="SGN-E442521 [cSTA-33-H24]">
      <seq>gtcggcggaggctaatcgaggagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagattatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatgaaggaaaccttgaggtcaatggggaggattactccgttgaacctgctgaaagcagaaggcctttccgtgctctcttggatgttggccttttgaggactactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="101" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="193" r_length="92" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="320" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="400" r_length="80" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33743" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="489" r_length="89" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E442521" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTAC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATGAAGGAAACCTTGAG............................................................................................GTCAATGGGGAGGATTACTCCGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTTTGAGGACTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310624" ref_strand="+" ref_description="SGN-E310624 [cLEZ-19-M21]">
      <seq>acagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcaggaggcctttccgtgctctcttggacgtcggcctcttaagaactacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35906" stop="33444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35606" g_stop="35563" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="114" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="206" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="333" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33744" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="501" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E310624" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35606" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTA</genome_strand>
        <mrna_strand>ACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTAAGAACTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557538" ref_strand="+" ref_description="SGN-E557538 [16353]">
      <seq>cgccggcggagctaatcgaggagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagactatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatgaaggaaaccttgaggtcaatggggaggattactccgttgaacctgctgaaaacagaaggcctttccgtgctctcttggatgttggccttttgaggactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="101" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="193" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="320" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="400" r_length="80" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33745" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="487" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E557538" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGACTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATGAAGGAAACCTTGAG............................................................................................GTCAATGGGGAGGATTACTCCGTTGAACCTGCTGAAAACAGAAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTTTGAGGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561937" ref_strand="+" ref_description="SGN-E561937 [20489]">
      <seq>ccccaagcgccggcggaggcttaattgacagaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagcaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgtctgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaggaggcctttccgtgctctcttggatgtcggcctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35902" stop="33453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="112" r_length="71" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="205" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="332" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33753" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="491" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E561937" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGAC-GAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAG-AAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGT-TGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAA</genome_strand>
        <mrna_strand>CCCCAAGCGCCGGCGGAGGCTTAATTGACAGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGCAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTCTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292099" ref_strand="+" ref_description="SGN-E292099 [cLET-1-I3]">
      <seq>ccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcacgaggcctttccgtgctctcttggacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35900" stop="33463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35600" g_stop="35563" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="108" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="200" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="327" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="407" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33763" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="476" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E292099" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35600" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTC</genome_strand>
        <mrna_strand>CCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCACGAGGCCTTTCCGTGCTCTCTTGGACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415303" ref_strand="+" ref_description="SGN-E415303 [STM-21-I9]">
      <seq>cacagccccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagcaagaggcctttccgtgctctcttggacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="207" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="334" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="414" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33763" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="483" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E415303" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGCAAGAGGCCTTTCCGTGCTCTCTTGGACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203019" ref_strand="+" ref_description="SGN-E203019 [cLEB-1-J24]">
      <seq>gcacgagcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgattgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattgtggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttcttaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagcacgaggcctttccgagctctcttggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="33464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35596" g_stop="35563" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="104" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="196" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="323" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="403" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33764" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="471" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E203019" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35596" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGT</genome_strand>
        <mrna_strand>GCACGAGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGATTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTGTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTTAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCACGAGGCCTTTCCGAGCTCTCTTGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571448" ref_strand="+" ref_description="SGN-E571448 [13632]">
      <seq>cccaagcgccggcggaggcttaatcgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacttaattgcacaaatggtgtctgctagtattgctggtgacatgattcttgcttctggttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgttgcatacttgtaccggacttctttgggcaaggcgagttctcaagaagcttgaaatggatgacgaatatcacgggaacatcttgatgtcaacgggacgaggattactccggttgaacctgctgaaagcaggaggcctttccgtgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35901" stop="33472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35601" g_stop="35563" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="411" r_length="83" r_score="0.875"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33772" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="474" r_length="63" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E571448" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35601" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACT-GTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCA-AGGAA-ATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAA-TGGA-GAGGACTACT-CTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTC</genome_strand>
        <mrna_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACTTAATTGCACAAATGGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGGTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGTTG..........................................................................................CATACTTGTACCGGACTTCTTTGGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGACGAATATCACGGGAACATCTTGAT............................................................................................GTCAACGGGACGAGGATTACTCCGGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289557" ref_strand="+" ref_description="SGN-E289557 [cLET-3-F18]">
      <seq>gccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctgaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35894" stop="33492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="321" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33792" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="441" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E289557" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCA</genome_strand>
        <mrna_strand>GCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437730" ref_strand="+" ref_description="SGN-E437730 [cSTA-4-H16]">
      <seq>caagcgcctgcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="107" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="199" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="326" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="406" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33793" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="445" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E437730" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437914" ref_strand="+" ref_description="SGN-E437914 [cSTA-5-B13]">
      <seq>gacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="84" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="176" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="303" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="383" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33794" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="421" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E437914" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438557" ref_strand="+" ref_description="SGN-E438557 [cSTA-8-N1]">
      <seq>ccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaacggagaggactactccgttgaacctgctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35893" stop="33495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35593" g_stop="35563" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="101" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="193" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="320" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="400" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33795" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="437" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E438557" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35593" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAA</genome_strand>
        <mrna_strand>CCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAACGGAGAGGACTACTCCGTTGAACCTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239654" ref_strand="+" ref_description="SGN-E239654 [cLED-33-C19]">
      <seq>cccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttggttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggcgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttgaacctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35901" stop="33498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35601" g_stop="35563" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="408" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33798" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="442" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E239654" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35601" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTGAACCTGCTG</genome_strand>
        <mrna_strand>CCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTGGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGCGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTGAACCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322471" ref_strand="+" ref_description="SGN-E322471 [cTOB-26-E2]">
      <seq>gatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctaatattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaatgcgagttctcaagaatcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactactctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34813" stop="33507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34513" g_stop="34456" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="185" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33831" g_stop="33807" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="290" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E322471" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34513" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACTCTGTTG</genome_strand>
        <mrna_strand>GATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAATATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAATGCGAGTTCTCAAGAATCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACTCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472174" ref_strand="+" ref_description="SGN-E472174 [cSTB-27-F18]">
      <seq>ctcacggccgtcggcggaggctaatcgaggagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagactatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatgaaggaaaccttgaggtcaatggggaggattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="110" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="202" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="329" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="409" r_length="80" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33813" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="428" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E472174" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGACTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATGAAGGAAACCTTGAG............................................................................................GTCAATGGGGAGGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475708" ref_strand="+" ref_description="SGN-E475708 [cSTB-41-B19]">
      <seq>ccctcacggccgtcggcggaggctaatcgaggagaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagactatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatgaaggaaaccttgaggtcaatggggaggattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="112" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="204" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="331" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="411" r_length="80" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33813" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="430" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E475708" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACT</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGACTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATGAAGGAAACCTTGAG............................................................................................GTCAATGGGGAGGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338899" ref_strand="+" ref_description="SGN-E338899 [cTOE-21-F13]">
      <seq>aaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatggagaggactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35000" stop="33607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34700" g_stop="34640" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="153" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="280" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="360" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33831" g_stop="33813" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="379" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E338899" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34700" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGGAGAGGACTACT</genome_strand>
        <mrna_strand>AAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGGAGAGGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269707" ref_strand="+" ref_description="SGN-E269707 [cLEM-17-K10]">
      <seq>acagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35906" stop="33616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35606" g_stop="35563" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="114" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="206" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="333" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33831" g_stop="33824" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="421" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E269707" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35606" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
          <exon e_start="33831" e_stop="33824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTAAGTGGTAGCTGCAAGCAAGGTTTCTGTGTGCATCTTTTGTCCTGTTTGCAGTTTCTTTTGTATCTAACTTCAAATGCATGTTGTCACAGGTCAATGG</genome_strand>
        <mrna_strand>ACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT............................................................................................GTCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477328" ref_strand="+" ref_description="SGN-E477328 [cSTB-47-L10]">
      <seq>attccccacagccccaaacgccggcggaggcttcatcgacgaacaacaatggccttcatcaaagtccagaagaccagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgattcactaacagggacataattgcacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35913" stop="33623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35613" g_stop="35563" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="121" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="213" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="340" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="420" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E477328" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35613" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT</genome_strand>
        <mrna_strand>ATTCCCCACAGCCCCAAACGCCGGCGGAGGCTTCATCGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACCAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTC...........................................................................................................................................................................................................................................ACTAACAGGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336318" ref_strand="+" ref_description="SGN-E336318 [cTOE-10-B19]">
      <seq>agcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35897" stop="33623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35597" g_stop="35563" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="197" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="324" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="404" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E336318" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35597" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT</genome_strand>
        <mrna_strand>AGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438044" ref_strand="+" ref_description="SGN-E438044 [cSTA-5-P16]">
      <seq>ccggcggaggcttaattgacgaacaacaatggccttcatcaaagtccagaagactagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactatagagccaggaatcgtctgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacataatagcacaaattgtgtctgctagtattgctggtgatatgattcttgcttctgcttatgcaagcgagttgcctcattttggacttaaagttggattgacgaactatgctgctgcatactgtaccggacttcttttggcaaggcgagttctcaagaagcttgaaatggatgaagaatatcaaggaaatcttgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35893" stop="33622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35593" g_stop="35563" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="101" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="193" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="320" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="400" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E438044" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35593" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT</genome_strand>
        <mrna_strand>CCGGCGGAGGCTTAATTGACGAACAACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACTAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATAGCACAAATTGTGTCTGCTAGTATTGCTGGTGATATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443869" ref_strand="+" ref_description="SGN-E443869 [cSTA-40-B11]">
      <seq>gaaacaatggccttcatcaaagtccagaagacaagggcttattttaagcgtttccaggtcaaattcaagagaaggagagaggggaaaacagattatagagccaggaatcgtttgatcaatcaggacaaaaataagtacaacactccaaaatatcgtttggttgtccgatttactaacaaggacataattgcacaagttgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgctaacgagctgcctcgttatggcctcaaagttggactgactaattatgctgctgcctactgcactggacttcttttggcacggagagttctcaaaaagcttgaaatggatgaggagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35010" stop="33639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="79" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="171" r_length="92" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.341" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="298" r_length="127" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34003" g_stop="33938" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="364" r_length="66" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E443869" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATC</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTCAAGAGAAGGAGAG............................................................................................AGGGGAAAACAGATTATAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAATAAGTACAACACTCCAAAATATCGTTTGGTTGTCCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAATTGCACAAGTTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTCAAAGTTGGACTGACTAATTATGCTGCTG..........................................................................................CCTACTGCACTGGACTTCTTTTGGCACGGAGAGTTCTCAAAAAGCTTGAAATGGATGAGGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277906" ref_strand="-" ref_description="SGN-E277906 [cLEL-5-L9](-)">
      <seq>gcacgagtttaactcattccccacagccccaagcgccggcggaggcttaatcgacgaacagcaccgggcttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatactgtaccggacttctcttggcaaggcgagttctcaagaagcttgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35921" stop="33651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35629" g_stop="35563" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="136" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="228" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="355" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33951" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="408" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E277906" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35629" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATG</genome_strand>
        <mrna_strand>GC-ACGAGTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277123" ref_strand="-" ref_description="SGN-E277123 [cLEL-3-A10](-)">
      <seq>gcacgagattccccacagccccaagcgccggcggaggcttaatcgacgaacagcagtgggcttcatcaaagtccagaagacacgggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctggttgatactgtaccggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35913" stop="33786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35620" g_stop="35563" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="128" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="220" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="347" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33988" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="363" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E277123" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277123" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35620" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACTGTACCGGACT</genome_strand>
        <mrna_strand>GCACGAGATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCATCAAAGTCCAGAAGACACGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGGTT..........................................................................................GATACTGTACCGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290570" ref_strand="+" ref_description="SGN-E290570 [cLES-20-F3]">
      <seq>ttccccacagccccaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttactaacaaggacatagttacacaaattgtgtctgctagtattgctggtgacatgattcttgcttctgcttatgcaagtgagttgcctcattttggactgaaagttggattgacaaactatgctgctgcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35912" stop="33794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35612" g_stop="35563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="120" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34456" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="212" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34220" g_stop="34094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="339" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34003" g_stop="33998" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="345" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E290570" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35612" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34456"/>
          <exon e_start="34220" e_stop="34094"/>
          <exon e_start="34003" e_stop="33998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTGATTAGTGATGGAAATTCTGAGAGTAACTTTTCTGTGATGCTGGGAGGTGATTTTTTCCCGTGTTTTATCTTAACATTTTCCTCTAGACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTGGTACTTACTCAAGCTATTCATTTATTGGTTATCCAGATGAAATTCTTCTGTATATCTAATATATGATAAGTGGTTTGCTACTGATTTCAGCATACT</genome_strand>
        <mrna_strand>TTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTT...........................................................................................................................................................................................................................................ACTAACAAGGACATAGTTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGTGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG..........................................................................................CATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343661" ref_strand="+" ref_description="SGN-E343661 [cTOF-20-N16]">
      <seq>acgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaaacaagtacaacactccaaaataccgtttcgttgttcgatttgtatcctttctactgcattttctgcctttctaatttgcaaagcagctacttgataaattgctatttctttcggagaatcatctactgtttggtccacggaacaattccttattactgtgcattcattgaatgtcactttggaatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35013" stop="34013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="83" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34547" g_stop="34307" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="325" r_length="242" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E343661" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCAC-TTGGAATTCCTTG</genome_strand>
        <mrna_strand>GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTTGTATCCTTTCTACTGCATTTTCTGCCTTTCTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCACGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTTGGAATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202790" ref_strand="+" ref_description="SGN-E202790 [cLEB-1-A13]">
      <seq>gcacgagcaagcgccggcggaggcttaatcgacgaacagcaatggccttcatcaaagtccagaagacaagggcttacttcaagcgtttccaggttaaattcaagagaaggagagagggaaagactgactacagagccaggaatcgtttgatcaatcaggacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35899" stop="34197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="44" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34709" g_stop="34640" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="114" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34547" g_stop="34497" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="165" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E202790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35563"/>
          <exon e_start="34709" e_stop="34640"/>
          <exon e_start="34547" e_stop="34497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATGGTACGATTCAGTTATCTTTTTATAATTTCAATGAAATGTATGTTATAGATTTTCTATTGTACTTTTGAATTCATGATATACATTTTGTTGTTTAAATTTTTTTATAGCTATAGAGTTTTTCATTCATAATTTGTACTGTATATGGTTGTTTGGTGTATACAAGTGTGTAAATTGTGGTTTTGGTGTTATTTTATTGTTTATGGATCTGTTTTTATGTTATTGATATGTGCTTAGTTTGATTTGCTTTTGTTTTTCCACTTTTTATTTGGTGCATGTATGAAAATGTTAACAAAAAATGAATTTTCTCTTGGAAAGTATGGATCAGAATATTTATTTCGTATAAATATTAGGCAGTAGATAATATAATATTAGGCAAGGAGTTTGATTTTTGTAGAACTAGTGATGGAAACTGTCTTATTCTCTTTTGTGAACATGGATTTTGCATTCTATATCTGATTTGAGCTTGATTTTTTAATGACAGTATATCACTCGAGTTTAATTTAGGTTTTAAACTTGAAAGGTTCAAGCTTTAAGGTTCTTATTTTTGAACTAATTATACATTTTAACATCTAGACTAATTTTTATCATGTTTTTATGTGGTGTCCATAAATATTCTGTTTGTAACTAATGAACTCTATCTTACACTGCATATCCCTTGATGTGATTGAACCACTTTTTAACATCTAGATCTAAAATAAAGCTTATGTTACTTACTCGACATTCCAATTGCATTTTGTTTAGGAAAAAAATGTATATGACCTGCAAATTAATGGTTGGTACAAGTTGCGTAAAACTATGATTTGAATGCTTCATTTTCTTTGAGTTTTGACATTGTTGCTAAATTATGTTGCAGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGGTAAAACTCATCTTCCTTCATCTTTTCTGGTCTGTTTTCAATCTTGTTTGCAGTTAAAGTATCACTAATTTCAATGTTTTGCTAATGTGTAGAGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAA</genome_strand>
        <mrna_strand>GAGCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG............................................................................................AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425051" ref_strand="+" ref_description="SGN-E425051 [STM-44-B15]">
      <seq>gtgacatatcactaaatttgcatcacatccaaacaaggtgttataaattccgatgctgatgtgagtgattaacaatagttccaatttcttatcttcgccactgtcagccgtctcagtgttggtttgtgtggctaacctctcaagttaacatcctccaatcatttctcttttggtattggtaccaaagacggtaagtatagttaaaactgaccattgggacgttgacgttttactctggttgataagtaaactatcttcctatttcctacttcttaggggacttcatagttcaaaaaccagatttctttgccataagtcactgatctcataggtcatgcgtttgaagacttgctctttcttttttcgagtcgtctacctcttctaagactctagcatgtcttttaataaaattattgggaagtcctaatataaaaaaaagtttattgtgaactatcgagcttcacacccttgctggagtgttaacttggtagaaatggataatccatcagatgacttctctggatatatcatgcagcttcctgacgattgtttactctttattttccaacaccttgactgtggatctgaccgtgaatcatttggtttaacctgtcgtcgctggcttcaaattncaaatctaaatagaagatctttacagttccaatgctctttcactatgcttaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37934" stop="41294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38238" g_stop="38327" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="116" r_length="90" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38328" i_stop="40391" i_length="2064">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.901" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40392" g_stop="40766" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="491" r_length="375" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40767" i_stop="40796" i_length="30">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.074" a_score="1.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40797" g_stop="40994" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="689" r_length="198" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E425051" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38238" e_stop="38327"/>
          <exon e_start="40392" e_stop="40766"/>
          <exon e_start="40797" e_stop="40994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAACAAGGTGTTATAAATTGCGATGCTGATATGAGTGATTAGCAATAGTTCCAATTTCTTATCTTCGCCTCTCTCACTGCTCTCAGGTATGGCCGATTATAATTTCAATTTTTTTTAAGTCTGCAAAACACCTTTTTCTTCCCGAATTTGATAGATTTTGTGGATTTTTTTGGTGAAATTTTGATGAAATTGTAGTATTATAGAACCCAGATTTGGTAGATGTAGCATATCTACCATTAGTTCAATTGAATCTAGTGTTTTTCGGCAGATAAATAGGTAAAAAAATCACTAAAAGCTAAAAAAATATTGCTTTTTGAATTTATTATTTGTTTTTTTTCTCTCTCGAAATTTTCATGTTAACAATTTTTTGTAGAGGGAAATGTTCTGTATTTTCACTTTGTTCAGCTAATCACTATACTGTGTTCTATGTAGTCTATTTGAAATTGTCAATGTGAAGAACAATTGCAGAACTTTAGGTGTACTGTATTATCTATTTGATTCAAATTAACTAAAATATGATGTGTATTTTTAAGTGCTTACCCACGACTCAGGCCAGGGGCGGAGTCGTGGAGCTAGGTGGATTCTAGGGGTTCAGTTGAATCTCATTTGTCAGATGATTATGATAGGTAAATAGGGGAAAACCAAATGTTTTTGTGTATATGTCAAATGTTTATCTATCTCTAGGAGGTAGAAATAAGGTCTGCATACACTTTACCCTCTTGTTGGACTATACTGGGTATGTTGTTGTTGTTCTTGTTATCAATTGTTGAATTTCATTGACATAAGGAAGATTCCATTGACATAGGTCTGCGTACATTCTTGAATTTTTTTTGAATAGCCTTGTTAGAATCCCTTGCTCTGCCTTTGGTCATTCAAGTGTTGTTAAATCTTTCTCTTAGAATATCTAAACCCAAAATGCTGACTTATTGGAGCAAGGGGGAACTTAGAGCTATCTGTAGTTTACAAAATATTTCAAGTTATGGGAATAAAGGAATTCTGTTGGGTTGTTACTTGCTGCTCCTTATGTATTGAGCTTACTTCAAAGTTGATTTCCTTTTTCGACCCCTAATCTGACCTCTTAGTGCCATTTGGTTCAACGAATCAGGTGGGTTATCCCGGAACAAATTTTGTGATTAAATTTATCCCATGTTTGGTTGGAGGTATTAGCCAAGTTAGTATTTTTTTTTAACCAAAATCTTAGTATAACTTATCCCATATAGAAGGTGGATTAGTTATAATCTTGAGATATCGGTTTGAACCAAATGACCCCTTAGGAGAGGTTTTTGTACAAGCTATTATCAAGTGTCTGCAGAATAGCTAGTTCTTTGAAAGCTCATCTTCCAATTGTACATCTATTCCTGGTTGAGGCATTGTTTGTGATACCATATACATATGTTTATGCGTGTGGATCATTTGGAAAGACAGAAATAGGAGGCCTTTGAAGGGGTGGAGATGAACTTTGCTCGATTGTGGAGTAGTCTTCAATCCCTTATAGTTTTTTTGGTGCACCCAAGTAACACTACTATCACAGTTGGGATGTTTTCAAGACTTAACCAAATGTAGGATACTTTTCTATATCCAGATAGCCCGGGCTCGAGATGAAGCTAAGCATACACATTAGTCTTGTAAATATTTTGTATCCTCACCAAGATGTGTGTGGTATATTTCTGAGAAAATAGCTCCGGATGGTTTTATTGTCTAGCTACACCTTGGCATGCATAAAAGACAATTAAGTAGCTTTTATTAAGTTTTTTTTTTAATTTCTTTTTGTTTTTTTTTTTGCATCTTTTGACTTAGGTCGCTATCTTATGATGTACCTAGTACGCATTAGTAGTACTGCTGAAATTTGAGGTTATGTATTCATATTGAAGTGGACACATGCATGCAGAAAGCATCTTACAACATATGGATGAGGTTACAATTTACCTTTGTCATTTTGTAATGCCTGAAAACATTAAAATAGCCTATTTACCTTCATAAGATATGGTTAAGGGCCGTGTATCCACCCTCCGCGATCCCACTTGTGGAATTACACTGGGTATGTTCTTGTAGAGAAAATTTACATATAAACAAAAGACAAGATATTCATGTATGGTATGCTCAATGCTGTATAATGTCAACTAATATGGGGTTTTCCTTATTCTTTGCAGTGTTGGTTTGTGTGGCTAACCTCTCAAGTTAATGTCCTCCAATCTTTTTGCTTTTGGTATTGGTACCAAAGACGATAAGTATAGATAAAACTGACCGTTGGGAACGTTGACGTTTTACTCTGGTTGATAAGTAAACTATCTTCCTAGTTCCTACGTCTTAAGGGACTTCATAGTTCTGAAACCAGATTTCTTTGCCATAAGCCAGTGATCTCATAGGTCATGTGTTTGAAGACTTGCTCTTTCTTTTTTCGAGTCTTCTACCTCTTCT-AGACTCTAGCATGTCTTTTGATAAAATTATTGGGAAGTCCTAATAAAAAGAAAAGTTTATTGTGAACTATCGAGCTTCACACCCTTGCTGGAGTGTTAACTTGGTAGAAATGGATAATCCATCATCTAACTTGGTAGAAATGGATAATCCATCAGATGACTTCTCTGGATATATCATGCAGCTTCCTGACGATTGTTTACTCTTTATTTTCCAACACCTTGACTGTGGATCTGACCGTGAATCGTTTGGTTTAACCTGTCGTCGCTGGCTTCAAATTCAAAATCTAAATAGAAGATCTTTACAGTTCCAATGCTCTTTCACTGTGCTTAATTTTT</genome_strand>
        <mrna_strand>ATCCAAACAAGGTGTTATAAATTCCGATGCTGATGTGAGTGATTAACAATAGTTCCAATTTCTTATCTTCGCCACTGTCAGCCGTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGTTTGTGTGGCTAACCTCTCAAGTTAACATCCTCCAATCATTTCTCTTTTGGTATTGGTACCAAAGACGGTAAGTATAGTTAAAACTGACCATTGGG-ACGTTGACGTTTTACTCTGGTTGATAAGTAAACTATCTTCCTATTTCCTACTTCTTAGGGGACTTCATAGTTCAAAAACCAGATTTCTTTGCCATAAGTCACTGATCTCATAGGTCATGCGTTTGAAGACTTGCTCTTTCTTTTTTCGAGTCGTCTACCTCTTCTAAGACTCTAGCATGTCTTTTAATAAAATTATTGGGAAGTCCTAATATAAAAAAAAGTTTATTGTGAACTATCGAGCTTCACACCCTTGCTGGAGTGTTAACTTGGTAG..............................AAATGGATAATCCATCAGATGACTTCTCTGGATATATCATGCAGCTTCCTGACGATTGTTTACTCTTTATTTTCCAACACCTTGACTGTGGATCTGACCGTGAATCATTTGGTTTAACCTGTCGTCGCTGGCTTCAAATTNCAAATCTAAATAGAAGATCTTTACAGTTCCAATGCTCTTTCACTATGCTTAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453784" ref_strand="+" ref_description="SGN-E453784 [cSTS-21-K1]">
      <seq>gtgacatatcactaaatttgcatcacatccaaacaaggtgttataaattccgatgcctgatgtgagtgattaacaatagttccaatttcttatcttcgccactgtcagccgtctcagtgttggtttgtgtggctaacctctcaagttaacatcctccaatcatttctcttttggtattggtaccaaagacggtaagtatagttaaaactngaccattggngacgttgacgttttactctggttgataagtaaactatcttcctatttcctacttcttaggggacttcatagttcaaaaaccagatttctttgccataagtcactgatctcataggtcatgcgtttgaagacttgctctttcttttttcgagtcgtctacctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37934" stop="40958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38238" g_stop="38327" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="117" r_length="91" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38328" i_stop="40391" i_length="2064">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.901" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40392" g_stop="40658" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="385" r_length="268" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E453784" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38238" e_stop="38327"/>
          <exon e_start="40392" e_stop="40658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAACAAGGTGTTATAAATTGCGATG-CTGATATGAGTGATTAGCAATAGTTCCAATTTCTTATCTTCGCCTCTCTCACTGCTCTCAGGTATGGCCGATTATAATTTCAATTTTTTTTAAGTCTGCAAAACACCTTTTTCTTCCCGAATTTGATAGATTTTGTGGATTTTTTTGGTGAAATTTTGATGAAATTGTAGTATTATAGAACCCAGATTTGGTAGATGTAGCATATCTACCATTAGTTCAATTGAATCTAGTGTTTTTCGGCAGATAAATAGGTAAAAAAATCACTAAAAGCTAAAAAAATATTGCTTTTTGAATTTATTATTTGTTTTTTTTCTCTCTCGAAATTTTCATGTTAACAATTTTTTGTAGAGGGAAATGTTCTGTATTTTCACTTTGTTCAGCTAATCACTATACTGTGTTCTATGTAGTCTATTTGAAATTGTCAATGTGAAGAACAATTGCAGAACTTTAGGTGTACTGTATTATCTATTTGATTCAAATTAACTAAAATATGATGTGTATTTTTAAGTGCTTACCCACGACTCAGGCCAGGGGCGGAGTCGTGGAGCTAGGTGGATTCTAGGGGTTCAGTTGAATCTCATTTGTCAGATGATTATGATAGGTAAATAGGGGAAAACCAAATGTTTTTGTGTATATGTCAAATGTTTATCTATCTCTAGGAGGTAGAAATAAGGTCTGCATACACTTTACCCTCTTGTTGGACTATACTGGGTATGTTGTTGTTGTTCTTGTTATCAATTGTTGAATTTCATTGACATAAGGAAGATTCCATTGACATAGGTCTGCGTACATTCTTGAATTTTTTTTGAATAGCCTTGTTAGAATCCCTTGCTCTGCCTTTGGTCATTCAAGTGTTGTTAAATCTTTCTCTTAGAATATCTAAACCCAAAATGCTGACTTATTGGAGCAAGGGGGAACTTAGAGCTATCTGTAGTTTACAAAATATTTCAAGTTATGGGAATAAAGGAATTCTGTTGGGTTGTTACTTGCTGCTCCTTATGTATTGAGCTTACTTCAAAGTTGATTTCCTTTTTCGACCCCTAATCTGACCTCTTAGTGCCATTTGGTTCAACGAATCAGGTGGGTTATCCCGGAACAAATTTTGTGATTAAATTTATCCCATGTTTGGTTGGAGGTATTAGCCAAGTTAGTATTTTTTTTTAACCAAAATCTTAGTATAACTTATCCCATATAGAAGGTGGATTAGTTATAATCTTGAGATATCGGTTTGAACCAAATGACCCCTTAGGAGAGGTTTTTGTACAAGCTATTATCAAGTGTCTGCAGAATAGCTAGTTCTTTGAAAGCTCATCTTCCAATTGTACATCTATTCCTGGTTGAGGCATTGTTTGTGATACCATATACATATGTTTATGCGTGTGGATCATTTGGAAAGACAGAAATAGGAGGCCTTTGAAGGGGTGGAGATGAACTTTGCTCGATTGTGGAGTAGTCTTCAATCCCTTATAGTTTTTTTGGTGCACCCAAGTAACACTACTATCACAGTTGGGATGTTTTCAAGACTTAACCAAATGTAGGATACTTTTCTATATCCAGATAGCCCGGGCTCGAGATGAAGCTAAGCATACACATTAGTCTTGTAAATATTTTGTATCCTCACCAAGATGTGTGTGGTATATTTCTGAGAAAATAGCTCCGGATGGTTTTATTGTCTAGCTACACCTTGGCATGCATAAAAGACAATTAAGTAGCTTTTATTAAGTTTTTTTTTTAATTTCTTTTTGTTTTTTTTTTTGCATCTTTTGACTTAGGTCGCTATCTTATGATGTACCTAGTACGCATTAGTAGTACTGCTGAAATTTGAGGTTATGTATTCATATTGAAGTGGACACATGCATGCAGAAAGCATCTTACAACATATGGATGAGGTTACAATTTACCTTTGTCATTTTGTAATGCCTGAAAACATTAAAATAGCCTATTTACCTTCATAAGATATGGTTAAGGGCCGTGTATCCACCCTCCGCGATCCCACTTGTGGAATTACACTGGGTATGTTCTTGTAGAGAAAATTTACATATAAACAAAAGACAAGATATTCATGTATGGTATGCTCAATGCTGTATAATGTCAACTAATATGGGGTTTTCCTTATTCTTTGCAGTGTTGGTTTGTGTGGCTAACCTCTCAAGTTAATGTCCTCCAATCTTTTTGCTTTTGGTATTGGTACCAAAGACGATAAGTATAGATAAAACT-GACCGTTGGGAACGTTGACGTTTTACTCTGGTTGATAAGTAAACTATCTTCCTAGTTCCTACGTCTTAAGGGACTTCATAGTTCTGAAACCAGATTTCTTTGCCATAAGCCAGTGATCTCATAGGTCATGTGTTTGAAGACTTGCTCTTTCTTTTTTCGAGTCTTCTACCTCTTC</genome_strand>
        <mrna_strand>ATCCAAACAAGGTGTTATAAATTCCGATGCCTGATGTGAGTGATTAACAATAGTTCCAATTTCTTATCTTCGCCACTGTCAGCCGTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGTTTGTGTGGCTAACCTCTCAAGTTAACATCCTCCAATCATTTCTCTTTTGGTATTGGTACCAAAGACGGTAAGTATAGTTAAAACTNGACCATTGGNGACGTTGACGTTTTACTCTGGTTGATAAGTAAACTATCTTCCTATTTCCTACTTCTTAGGGGACTTCATAGTTCAAAAACCAGATTTCTTTGCCATAAGTCACTGATCTCATAGGTCATGCGTTTGAAGACTTGCTCTTTCTTTTTTCGAGTCGTCTACCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245043" ref_strand="+" ref_description="SGN-E245043 [cLEF-13-G20]">
      <seq>ttttttttttttttttgagatcttcggatttcatggatttacacaaatgatgtaacaatgaaacatctcatcgacaatcaacggatcataaaacatcatttccagaacgatgtttgttaagtctccaaaactgacgtgcacattgatctataacaacctacaaatcccacacaaacatggcagggggaaggggaggggagattattattcatttaaatgcagcaagtcaatccaacagggtaggtagattggttttacatgcgagtacaccacaccagcatagctcttatctatactgtagctttcatacaaactgcaacttcttgttgatggcttccgatggtaggtgacatttgtaagtcactactctatatcactgtgcattatcaccccacacatcgttccatgcagcacctggagcagccttaggcccctcaataaagttctgattaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="+" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42256" stop="43298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42542" g_stop="42998" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="+" ref_id="SGN-E245043" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42542" e_stop="42998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTCAAATAAATTGAGATCTTCGGATTTCATGGATTTACACAAATGATGTAACAATGAAACATCTCATCGACAATCAACGGATCATAAAACATCATTTCCAGAACGATGTTTGTTAAGTCTCCAAAACTGACGTGCACATTGATCTATAACAACCTACAAATCCCACACAAACATGGCAGGGGGAAGGGGAGGGGAGATTATTATTCATTTAAATGCAGCAAGTCAATCCAGCAGGGTAGGTAGATTGGTTTTACATGCGAGTACACCACACCAGCATAGCTCTTATCTATACTGTAGCTTTCATACAAACTGCAACTTCTTGTTGATGGCTTCCGATGGTAGGTGACATTTGTAAGTCACTACTCTATATCACTGTGCATTATCACCCCACACATCGTTCCATGCAGCACCTGGAGCAGCCTTAGGCCCCTCAATAAAGTTCTGATTACCATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTGAGATCTTCGGATTTCATGGATTTACACAAATGATGTAACAATGAAACATCTCATCGACAATCAACGGATCATAAAACATCATTTCCAGAACGATGTTTGTTAAGTCTCCAAAACTGACGTGCACATTGATCTATAACAACCTACAAATCCCACACAAACATGGCAGGGGGAAGGGGAGGGGAGATTATTATTCATTTAAATGCAGCAAGTCAATCCAACAGGGTAGGTAGATTGGTTTTACATGCGAGTACACCACACCAGCATAGCTCTTATCTATACTGTAGCTTTCATACAAACTGCAACTTCTTGTTGATGGCTTCCGATGGTAGGTGACATTTGTAAGTCACTACTCTATATCACTGTGCATTATCACCCCACACATCGTTCCATGCAGCACCTGGAGCAGCCTTAGGCCCCTCAATAAAGTTCTGATTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695082" ref_strand="+" ref_description="SGN-E695082 [LH_Ea05J16](-)">
      <seq>aatcagaactttatcgaggggcctaaggctgctccaggtgctgcatggaacgatgtgtggggtgataatgcacagtgatatagagtagtgacttacaaatgtcacctaccatcggaagccatcaacaagaagttgcagtttgtatgaaagctacagtatagataagagctatgctggtgtactcgcatgtaaaaccaatctacctaccctgctggattgacttgctgcattttaaatgaataattatctcccctccccttccccctgccatgtttgtgtgggatttgtaggttgttatagatcaatgtgcacgtcagttttggagacttaacaacatcgttctggaaatgatgttttatgatccgttgattgtcgataagatgtttcattgttaaagcatttgtgtaaatccatgaaatccgaagttctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43292" stop="26027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42992" g_stop="42542" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E695082" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42992" e_stop="42542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAACTTTATTGAGGGGCCTAAGGCTGCTCCAGGTGCTGCATGGAACGATGTGTGGGGTGATAATGCACAGTGATATAGAGTAGTGACTTACAAATGTCACCTACCATCGGAAGCCATCAACAAGAAGTTGCAGTTTGTATGAAAGCTACAGTATAGATAAGAGCTATGCTGGTGTGGTGTACTCGCATGTAAAACCAATCTACCTACCCTGCTGGATTGACTTGCTGCA-TTTAAATGAATAATAATCTCCCCTCCCCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAACAAACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATGAGATGTTTCATTGTTACATCATTTGTGTAAATCCATGAAATCCGAAGATCTCAATTTATTTGACCAGT</genome_strand>
        <mrna_strand>AATCAGAACTTTATCGAGGGGCCTAAGGCTGCTCCAGGTGCTGCATGGAACGATGTGTGGGGTGATAATGCACAGTGATATAGAGTAGTGACTTACAAATGTCACCTACCATCGGAAGCCATCAACAAGAAGTTGCAGTTTGTATGAAAGCTACAGTATAGATAAGAGCTATGC-----TGGTGTACTCGCATGTAAAACCAATCTACCTACCCTGCTGGATTGACTTGCTGCATTTTAAATGAATAATTATCTCCCCTCCCCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAAC-AACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATAAGATGTTTCATTGTTAAAGCATTTGTGTAAATCCATGAAATCCGAAGTTCTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691242" ref_strand="+" ref_description="SGN-E691242 [LH_Ea05J16]">
      <seq>cgattcagaactttatcgaggggcctaaggctgctccaggtgctgcatggaacgatgtgtggggtgataatgcacagtgatatagagtagtgacttacaaatgtcacctaccatcggaagccatcaacaagaagttgcagtttgtatgaaagctacagtatagataagagctatgctggtgtactcgcatgtaaaaccaatctacctaccctgctggattgacttgctgcattttaaatgaataattatctcccctccccttccccctgccatgtttgtgtgggatttgtaggttgttatagatcaatgtgcacgtcagttttggagacttaacaacatcgttctggaaatgatgttttatgatccgttgattgtcgataagatgtttcattgttacatcatttgtgtaaatccatgaaatccgaagttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43292" stop="42256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42994" g_stop="42549" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E691242" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42994" e_stop="42549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCAGAACTTTATTGAGGGGCCTAAGGCTGCTCCAGGTGCTGCATGGAACGATGTGTGGGGTGATAATGCACAGTGATATAGAGTAGTGACTTACAAATGTCACCTACCATCGGAAGCCATCAACAAGAAGTTGCAGTTTGTATGAAAGCTACAGTATAGATAAGAGCTATGCTGGTGTGGTGTACTCGCATGTAAAACCAATCTACCTACCCTGCTGGATTGACTTGCTGCA-TTTAAATGAATAATAATCTCCCCTCCCCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAACAAACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATGAGATGTTTCATTGTTACATCATTTGTGTAAATCCATGAAATCCGAAGATCTCAATTTATTT</genome_strand>
        <mrna_strand>CGATTCAGAACTTTATCGAGGGGCCTAAGGCTGCTCCAGGTGCTGCATGGAACGATGTGTGGGGTGATAATGCACAGTGATATAGAGTAGTGACTTACAAATGTCACCTACCATCGGAAGCCATCAACAAGAAGTTGCAGTTTGTATGAAAGCTACAGTATAGATAAGAGCTATGC-----TGGTGTACTCGCATGTAAAACCAATCTACCTACCCTGCTGGATTGACTTGCTGCATTTTAAATGAATAATTATCTCCCCTCCCCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAAC-AACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATAAGATGTTTCATTGTTACATCATTTGTGTAAATCCATGAAATCCGAAGTTCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230934" ref_strand="+" ref_description="SGN-E230934 [cLEL-35-P14](-)">
      <seq>aaatgaataataatctcccctccaccttccccctgccatgtttgtgtgggatttgtaggttgttatagatcaatgtgcacgtcagttttggagacttaacaaacatcgttctggaaatgatgttttatgatccgttgattgtcgatgagatgtttcattgttacatcatttgtgtaaatccatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0185J10-mfbyV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0185J10.1" temp_strand="-" temp_description="C06HBa0185J10.1  AC226012.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0185J10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43055" stop="42270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42755" g_stop="42556" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0185J10.1" gen_strand="-" ref_id="SGN-E230934" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0185J10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42755" e_stop="42556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGAATAATAATCTCCCCTCC-CCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAACAAACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATGAGATGTTTCATTGTTACATCATTTGTGTAAATCCATGAAATCCGAAGATCTCAA</genome_strand>
        <mrna_strand>AAATGAATAATAATCTCCCCTCCACCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAACAAACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATGAGATGTTTCATTGTTACATCATTTGTGTAAATCCATGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>240</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3715" PGL_stop="4449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3715" e_stop="4449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="3715" e_stop="4449" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3715" stop="4352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3718" stop="4277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3721" stop="4436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3721" stop="4430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3722" stop="4335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3876" stop="4449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3934" stop="4289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGATCGCTTATCTACGGAGATTTGCTTCACGAATCGCTCGAAACACTTCTCTATCATCCTCCTTCGGATCCTCAATCGCTCGATCTTCCGCTTCATCGTCGTCGCCGTCGGCTTCCGCCAAGGTCGCCGATCGGATTGTCAAGCTATCAGCTGTCGATCCAGACGGTAACAAACGCGATGTTGTCGGACTCTCGGGTCAAACACTGCTCAAAGCACTAACGAATCAGGGGTTAATTGACCCAGATTCTCATCGGCTTGAAGATATCGATGCTTGTTCAGCTGAATGTGAGGTACACATTGCTCAGGAATGGCTCGAGAAGCTTCCACCAGCTTCGTATGATGAAAAGTATGTTTTGAAGAGGAATTCTAGAGCTAGGGTTTTGAACAAGCACTCTAGGCTTGGATGTCAGGTGGTTCTTTCCCAGGAACTTCAAGGTATGGTTGTGGCACTTCCTGAACCCAAGCCTTGGGATATCCCGTAAGGTGAAATGAAAATTTGTTGAGGTTTTTGAATTGGAATTTTAGTGTTTTGTGATAATAATAATAATAATATATGGAAACTTTTGGTACTTGATGATGTTTCTTTTTTAATTACTCAGTATGTTTAAGCCATTGGAATGTTCCCAATTCGAAGTAAGTGGCAATATGATGTCGAAACTGTTTGAAGTTCACAACTTTGTTTGTTTTAATTTTGAAATGAATGATTTCCCATTTCATGTTATATCCTTGTAAG</gDNA_template>
            <first_frame> G  D  R  L  S  T  E  I  C  F  T  N  R  S  K  H  F  S  I  I  L  L  R  I  L  N  R  S  I  F  R  F  I  V  V  A  V  G  F  R  Q  G  R  R  S  D  C  Q  A  I  S  C  R  S  R  R  *  Q  T  R  C  C  R  T  L  G  S  N  T  A  Q  S  T  N  E  S  G  V  N  *  P  R  F  S  S  A  *  R  Y  R  C  L  F  S  *  M  *  G  T  H  C  S  G  M  A  R  E  A  S  T  S  F  V  *  *  K  V  C  F  E  E  E  F  *  S  *  G  F  E  Q  A  L  *  A  W  M  S  G  G  S  F  P  G  T  S  R  Y  G  C  G  T  S  *  T  Q  A  L  G  Y  P  V  R  *  N  E  N  L  L  R  F  L  N  W  N  F  S  V  L  *  *  *  *  *  *  Y  M  E  T  F  G  T  *  *  C  F  F  F  N  Y  S  V  C  L  S  H  W  N  V  P  N  S  K  *  V  A  I  *  C  R  N  C  L  K  F  T  T  L  F  V  L  I  L  K  *  M  I  S  H  F  M  L  Y  P  C  K </first_frame>
            <second_frame>  A  I  A  Y  L  R  R  F  A  S  R  I  A  R  N  T  S  L  S  S  S  F  G  S  S  I  A  R  S  S  A  S  S  S  S  P  S  A  S  A  K  V  A  D  R  I  V  K  L  S  A  V  D  P  D  G  N  K  R  D  V  V  G  L  S  G  Q  T  L  L  K  A  L  T  N  Q  G  L  I  D  P  D  S  H  R  L  E  D  I  D  A  C  S  A  E  C  E  V  H  I  A  Q  E  W  L  E  K  L  P  P  A  S  Y  D  E  K  Y  V  L  K  R  N  S  R  A  R  V  L  N  K  H  S  R  L  G  C  Q  V  V  L  S  Q  E  L  Q  G  M  V  V  A  L  P  E  P  K  P  W  D  I  P  *  G  E  M  K  I  C  *  G  F  *  I  G  I  L  V  F  C  D  N  N  N  N  N  I  W  K  L  L  V  L  D  D  V  S  F  L  I  T  Q  Y  V  *  A  I  G  M  F  P  I  R  S  K  W  Q  Y  D  V  E  T  V  *  S  S  Q  L  C  L  F  *  F  *  N  E  *  F  P  I  S  C  Y  I  L  V   </second_frame>
            <third_frame>   R  S  L  I  Y  G  D  L  L  H  E  S  L  E  T  L  L  Y  H  P  P  S  D  P  Q  S  L  D  L  P  L  H  R  R  R  R  R  L  P  P  R  S  P  I  G  L  S  S  Y  Q  L  S  I  Q  T  V  T  N  A  M  L  S  D  S  R  V  K  H  C  S  K  H  *  R  I  R  G  *  L  T  Q  I  L  I  G  L  K  I  S  M  L  V  Q  L  N  V  R  Y  T  L  L  R  N  G  S  R  S  F  H  Q  L  R  M  M  K  S  M  F  *  R  G  I  L  E  L  G  F  *  T  S  T  L  G  L  D  V  R  W  F  F  P  R  N  F  K  V  W  L  W  H  F  L  N  P  S  L  G  I  S  R  K  V  K  *  K  F  V  E  V  F  E  L  E  F  *  C  F  V  I  I  I  I  I  I  Y  G  N  F  W  Y  L  M  M  F  L  F  *  L  L  S  M  F  K  P  L  E  C  S  Q  F  E  V  S  G  N  M  M  S  K  L  F  E  V  H  N  F  V  C  F  N  F  E  M  N  D  F  P  F  H  V  I  S  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3716" stop="4198"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIAYLRRFASRIARNTSLSSSFGSSIARSSASSSSPSASAKVADRIVKLSAVDPDGNKRDVVGLSGQTLLKALTNQGLIDPDSHRLEDIDACSAECEVHIAQEWLEKLPPASYDEKYVLKRNSRARVLNKHSRLGCQVVLSQELQGMVVALPEPKPWDIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12112" PGL_stop="6664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12112" e_stop="11963"/>
            <exon e_start="9231" e_stop="8173"/>
            <exon e_start="7916" e_stop="7741"/>
            <exon e_start="7301" e_stop="6664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="0.972"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="12112" e_stop="11963" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="11962" i_stop="9232" i_length="2731"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="9231" e_stop="8173" e_length="1059"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7916" e_stop="7741" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7301" e_stop="6664" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12112" stop="11963"/>
              <exon start="9231" stop="8779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12106" stop="11963"/>
              <exon start="9231" stop="8773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12104" stop="11963"/>
              <exon start="9231" stop="8612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12091" stop="11963"/>
              <exon start="9231" stop="8775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12080" stop="11963"/>
              <exon start="9231" stop="8860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12055" stop="11963"/>
              <exon start="9231" stop="8891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12054" stop="11963"/>
              <exon start="9231" stop="8433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12054" stop="11963"/>
              <exon start="9231" stop="8682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12051" stop="11963"/>
              <exon start="9231" stop="8520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12047" stop="11963"/>
              <exon start="9231" stop="8743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12045" stop="11963"/>
              <exon start="9231" stop="8786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12043" stop="11963"/>
              <exon start="9231" stop="8806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12042" stop="11963"/>
              <exon start="9231" stop="8578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12033" stop="11963"/>
              <exon start="9231" stop="8609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12027" stop="11963"/>
              <exon start="9231" stop="8684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12025" stop="11963"/>
              <exon start="9231" stop="8751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12024" stop="11963"/>
              <exon start="9231" stop="8434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12024" stop="11963"/>
              <exon start="9231" stop="8815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12018" stop="11963"/>
              <exon start="9231" stop="8855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9231" stop="8752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9150" stop="8636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8983" stop="8509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8972" stop="8510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8919" stop="8261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8852" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8833" stop="8185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8825" stop="8435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8804" stop="8173"/>
              <exon start="7916" stop="7794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8705" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8569" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8562" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8527" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="6960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8488" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8477" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8427" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8404" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8386" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8378" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8325" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="6903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8321" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7910" stop="7741"/>
              <exon start="7301" stop="6745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599887" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7823" stop="7741"/>
              <exon start="7301" stop="6761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588863" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7762" stop="7741"/>
              <exon start="7301" stop="6744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443092" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7761" stop="7741"/>
              <exon start="7301" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7760" stop="7741"/>
              <exon start="7301" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7293" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7292" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7290" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7290" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7208" stop="6664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7183" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7167" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7165" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7121" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7090" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7087" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7057" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7018" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGTCGTAAAATAGCAGTCAACATTCTATCACTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTC : GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG : GTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG : AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCATGTTAATATTTCTTCATCCTTCTTTTCATTTTGGTTTTTCCTCATATGAAGCTTCGATGTTTCTTTGTAGATCCTTGCA</gDNA_template>
            <first_frame> S  C  R  K  I  A  V  N  I  L  S  L  T  F  L  F  C  S  F  S  L  Q  T  I  K  P  S  P  P  E  N  G  L  I  S  P  A  K  F  A  A  D  T  S  F  S  A  S  D  L  :  E  F  L  P  W  K  I  H  N  Q  L  Q  H  *  W  T  P  Q  P  L  R  Y  S  S  C  R  K  H  L  L  S  W  K  V  I  V  L  L  H  *  T  *  S  G  S  N  S  K  S  T  F  M  G  L  R  S  P  *  R  G  A  S  P  N  W  K  T  K  R  K  S  L  K  R  K  *  F  N  L  K  R  Y  W  R  I  G  K  L  L  L  S  L  V  R  K  L  H  L  R  A  S  K  R  K  E  M  L  P  F  L  P  L  L  L  L  W  R  S  I  *  S  L  I  S  W  N  L  L  V  L  L  L  R  C  K  V  S  R  L  C  L  M  Q  S  L  L  I  T  Y  H  L  R  I  Q  R  I  I  *  S  L  S  R  T  V  L  W  K  S  E  V  I  Q  I  *  S  N  Y  A  N  I  W  T  R  K  A  S  T  N  L  Y  L  T  T  A  R  T  W  L  L  *  G  R  K  F  H  L  L  *  E  L  L  F  I  L  P  V  W  C  W  T  H  S  R  V  F  T  P  Q  K  C  Q  F  Q  M  L  K  K  M  Q  I  F  *  V  F  A  E  L  V  L  C  *  W  N  A  L  A  F  Y  *  Q  H  W  N  W  I  L  F  Q  V  *  Y  Q  Q  V  L  R  N  G  Q  K  L  L  L  R  S  G  N  Q  S  *  M  S  L  T  L  M  Q  I  M  G  I  L  W  R  L  M  H  S  Y  S  F  L  L  L  S  V  L  T  P  T  L  T  R  K  T  C  T  S  *  Y  P  W  F  H  V  V  A  K  Q  Q  I  S  V  V  P  L  D  C  L  R  E  C  Q  :  V  L  L  T  C  W  L  I  T  G  G  I  *  M  L  L  I  *  L  L  R  L  S  *  L  T  S  F  H  L  F  H  Y  *  N  L  T  *  M  K  Q  T  E  Y  L  H  L  S  N  L  E  M  H  H  L  L  L  H  R :   M  M  S  T  R  S  S  *  L  H  *  R  L  *  *  S  A  S  K  N  I  N  L  R  R  N  T  P  W  I  L  S  R  T  G  F  T  S  W  R  K  K  R  Q  T  R  K  E  Q  L  K  L  P  N  L  N  P  R  D  L  V  P  I  V  *  E  M  E  L  E  P  L  V  L  P  L  R  R  T  S  M  L  V  E  *  L  I  G  I  H  S  T  Y  M  T  D  H  M  L  T  L  D  Q  L  T  P  T  F  R  H  S  L  V  L  P  T  T  S  L  P  D  M  A  T  S  L  E  M  V  I  T  I  R  Q  L  T  C  T  N  C  *  T  L  L  K  I  L  L  A  V  S  V  N  P  S  A  *  L  V  L  I  V  E  P  S  *  L  L  F  *  C  K  S  *  Y  C  D  V  L  I  Y  A  H  C  L  S  C  *  Y  F  F  I  L  L  F  I  L  V  F  P  H  M  K  L  R  C  F  F  V  D  P  C  </first_frame>
            <second_frame>  A  V  V  K  *  Q  S  T  F  Y  H  L  L  S  S  F  V  P  S  L  F  K  P  *  N  P  R  H  Q  K  M  A  *  F  L  R  R  N  S  P  P  T  L  H  F  P  P  P  I  S :   N  F  Y  H  G  R  Y  T  I  S  C  N  T  D  G  L  H  N  L  *  D  T  A  A  A  E  S  I  C  *  A  G  K  S  S  C  C  Y  T  K  P  E  V  E  A  T  R  R  A  L  S  W  A  *  E  V  L  E  E  A  L  H  R  I  G  R  P  R  E  R  V  *  N  E  N  S  S  I  *  K  D  I  G  E  S  A  S  C  C  Y  L  *  *  E  S  F  T  *  E  P  P  R  E  K  R  C  C  R  F  C  H  Y  Y  C  Y  G  E  A  Y  E  V  *  F  H  G  T  C  W  C  Y  F  *  G  A  R  *  V  V  Y  V  *  C  K  A  S  *  L  H  T  T  *  E  Y  R  G  L  Y  E  A  F  Q  E  R  C  C  G  S  Q  R  L  S  R  F  S  Q  I  M  P  I  Y  G  L  G  R  P  P  Q  I  Y  I  *  Q  P  Q  E  P  G  C  C  K  G  G  N  S  I  C  F  E  N  C  C  S  S  C  L  F  G  A  G  L  T  Q  G  F  L  P  L  R  S  V  N  F  R  C  *  K  R  C  K  S  F  R  S  S  P  N  L  Y  Y  A  N  G  M  P  *  H  F  I  N  N  T  G  I  G  F  C  F  K  F  N  I  S  K  C  *  G  T  G  K  S  Y  C  *  G  V  E  T  K  V  R  *  A  *  H  *  C  K  *  W  E  F  F  G  G  S  C  I  L  T  A  S  C  Y  F  R  Y  *  L  Q  L  *  P  G  R  P  V  Q  A  D  T  H  G  F  T  S  S  P  N  S  R  S  L  S  F  P  W  I  V  *  E  N  A  R :   C  Y  *  R  V  G  *  *  R  E  A  Y  R  C  C  *  S  S  F  C  V  *  A  D  *  Q  V  F  T  C  F  T  T  K  I  L  L  E  *  S  K  Q  S  I  F  T  C  Q  I  W  K  C  T  T  Y  Y  C  T   : E  *  C  Q  R  E  A  A  D  C  T  E  G  C  D  K  V  H  R  R  T  *  T  *  G  A  I  P  R  G  S  S  P  E  P  D  S  P  A  G  E  R  K  G  R  Q  E  K  S  N  *  S  C  Q  T  S  T  Q  E  T  S  C  Q  L  C  R  K  W  S  S  S  H  *  C  C  L  *  E  E  L  L  C  *  *  N  D  *  *  V  S  T  V  H  I  *  P  T  I  C  L  P  W  T  S  *  H  P  R  S  A  I  P  W  Y  C  L  Q  L  P  S  R  T  W  Q  L  L  W  K  W  L  S  L  S  G  N  L  P  A  L  I  A  R  L  C  *  R  S  F  *  L  L  V  L  T  L  L  L  N  *  Y  *  *  *  S  L  V  N  F  Y  S  D  V  K  A  N  T  V  M  F  *  Y  M  H  T  A  F  H  V  N  I  S  S  S  F  F  S  F  W  F  F  L  I  *  S  F  D  V  S  L  *  I  L  A </second_frame>
            <third_frame>   L  S  *  N  S  S  Q  H  S  I  T  Y  F  P  L  L  F  L  L  S  S  N  H  K  T  L  A  T  R  K  W  P  N  F  S  G  E  I  R  R  R  H  F  I  F  R  L  R  S   : R  I  F  T  M  E  D  T  Q  S  V  A  T  L  M  D  S  T  T  S  K  I  Q  Q  L  Q  K  A  F  A  E  L  E  S  H  R  A  V  T  L  N  L  K  W  K  Q  L  E  E  H  F  H  G  L  E  K  S  L  K  R  R  F  T  E  L  E  D  Q  E  K  E  F  E  T  K  I  V  Q  S  K  K  I  L  E  N  R  Q  A  A  V  I  S  S  E  K  A  S  L  E  S  L  Q  E  K  R  D  A  A  V  S  A  I  T  I  A  M  E  K  H  M  K  S  N  F  M  E  P  A  G  A  T  S  E  V  Q  G  E  S  S  M  F  D  A  K  P  L  D  Y  I  P  L  E  N  T  E  D  Y  M  K  P  F  K  N  G  V  V  E  V  R  G  Y  P  D  L  V  K  L  C  Q  Y  M  D  S  E  G  L  H  K  F  I  S  D  N  R  K  N  L  A  A  V  R  E  E  I  P  S  A  L  R  T  A  V  H  P  A  C  L  V  L  D  S  L  K  G  F  Y  P  S  E  V  S  I  S  D  A  K  K  D  A  N  L  L  G  L  R  R  T  C  I  M  L  M  E  C  L  S  I  L  L  T  T  L  E  L  D  S  V  S  S  L  I  S  A  S  V  K  E  R  A  K  A  I  A  E  E  W  K  P  K  L  D  E  L  D  I  D  A  N  N  G  N  S  L  E  A  H  A  F  L  Q  L  L  A  T  F  G  I  N  S  N  F  N  Q  E  D  L  Y  K  L  I  P  M  V  S  R  R  R  Q  T  A  D  L  C  R  S  L  G  L  S  E  R  M  P   : G  V  I  D  V  L  V  N  N  G  R  H  I  D  A  V  N  L  A  F  A  F  E  L  T  D  K  F  S  P  V  S  L  L  K  S  Y  L  N  E  A  N  R  V  S  S  P  V  K  S  G  N  A  P  P  T  T  A  Q  :  N  D  V  N  E  K  Q  L  T  A  L  K  A  V  I  K  C  I  E  E  H  K  L  K  A  Q  Y  P  V  D  P  L  Q  N  R  I  H  Q  L  E  K  E  K  A  D  K  K  R  A  T  E  V  A  K  P  Q  P  K  R  P  R  A  N  C  V  G  N  G  A  R  A  T  S  V  A  S  E  K  N  F  Y  A  S  R  M  T  D  R  Y  P  Q  Y  I  Y  D  R  P  Y  A  Y  P  G  P  A  D  T  H  V  P  P  F  L  G  T  A  Y  N  F  P  P  G  H  G  N  F  F  G  N  G  Y  H  Y  Q  A  T  Y  L  H  *  L  L  D  F  A  E  D  P  F  S  C  *  C  *  P  F  C  L  T  S  T  D  S  R  A  *  L  T  S  I  L  M  *  K  L  I  L  *  C  F  N  I  C  T  L  P  F  M  L  I  F  L  H  P  S  F  H  F  G  F  S  S  Y  E  A  S  M  F  L  C  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12101" stop="11963"/>
                    <exon start="9231" stop="8173"/>
                    <exon start="7916" stop="7741"/>
                    <exon start="7301" stop="6885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1788</number_coding_nucleotides>
                  <number_encoded_amino_acids>596</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSQHSITYFPLLFLLSSNHKTLATRKWPNFSGEIRRRHFIFRLRSRIFTMEDTQSVATLMDSTTSKIQQLQKAFAELESHRAVTLNLKWKQLEEHFHGLEKSLKRRFTELEDQEKEFETKIVQSKKILENRQAAVISSEKASLESLQEKRDAAVSAITIAMEKHMKSNFMEPAGATSEVQGESSMFDAKPLDYIPLENTEDYMKPFKNGVVEVRGYPDLVKLCQYMDSEGLHKFISDNRKNLAAVREEIPSALRTAVHPACLVLDSLKGFYPSEVSISDAKKDANLLGLRRTCIMLMECLSILLTTLELDSVSSLISASVKERAKAIAEEWKPKLDELDIDANNGNSLEAHAFLQLLATFGINSNFNQEDLYKLIPMVSRRRQTADLCRSLGLSERMPGVIDVLVNNGRHIDAVNLAFAFELTDKFSPVSLLKSYLNEANRVSSPVKSGNAPPTTAQNDVNEKQLTALKAVIKCIEEHKLKAQYPVDPLQNRIHQLEKEKADKKRATEVAKPQPKRPRANCVGNGARATSVASEKNFYASRMTDRYPQYIYDRPYAYPGPADTHVPPFLGTAYNFPPGHGNFFGNGYHYQATYLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12086" e_stop="11963"/>
            <exon e_start="10326" e_stop="10267"/>
            <exon e_start="9231" e_stop="8173"/>
            <exon e_start="7916" e_stop="7741"/>
            <exon e_start="7301" e_stop="6664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.664" e_score="0.984"/>
          <exon-intron don_prob="0.921" acc_prob="0.973" e_score="0.983"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="12086" e_stop="11963" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.664">
            <gDNA_intron_boundary i_start="11962" i_stop="10327" i_length="1636"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="10326" e_stop="10267" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.973">
            <gDNA_intron_boundary i_start="10266" i_stop="9232" i_length="1035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9231" e_stop="8173" e_length="1059"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7916" e_stop="7741" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7301" e_stop="6664" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12086" stop="11963"/>
              <exon start="10326" stop="10267"/>
              <exon start="9231" stop="8805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12001" stop="11963"/>
              <exon start="10326" stop="10267"/>
              <exon start="9231" stop="8836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10299" stop="10267"/>
              <exon start="9231" stop="8659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9231" stop="8752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9150" stop="8636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8983" stop="8509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8972" stop="8510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8919" stop="8261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8852" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8833" stop="8185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8825" stop="8435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8804" stop="8173"/>
              <exon start="7916" stop="7794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8705" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8569" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8562" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8527" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="6960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8488" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8477" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8427" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8404" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8386" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8378" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8325" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="6903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8321" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7910" stop="7741"/>
              <exon start="7301" stop="6745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599887" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7823" stop="7741"/>
              <exon start="7301" stop="6761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588863" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7762" stop="7741"/>
              <exon start="7301" stop="6744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443092" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7761" stop="7741"/>
              <exon start="7301" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7760" stop="7741"/>
              <exon start="7301" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7293" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7292" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7290" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7290" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7208" stop="6664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7183" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7167" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7165" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7121" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7090" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7087" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7057" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7018" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATCACTTACTTTCCTCTTTTGTTCCTTCTCTCTTCAAACCATAAAACCCTCGCCACCAGAAAATGGCCTAATTTCTCCGGCGAAATTCGCCGCCGACACTTCATTTTCCGCCTCCGATCTC : GTGTAGTGTTTGCTAGGTTTCTTTTTTTCTGTCTGTTGAAGACTTGCATGTTCCCCAAAG : GAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG : GTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG : AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCATGTTAATATTTCTTCATCCTTCTTTTCATTTTGGTTTTTCCTCATATGAAGCTTCGATGTTTCTTTGTAGATCCTTGCA</gDNA_template>
            <first_frame> S  I  T  Y  F  P  L  L  F  L  L  S  S  N  H  K  T  L  A  T  R  K  W  P  N  F  S  G  E  I  R  R  R  H  F  I  F  R  L  R  S   : R  V  V  F  A  R  F  L  F  F  C  L  L  K  T  C  M  F  P  K   : G  I  F  T  M  E  D  T  Q  S  V  A  T  L  M  D  S  T  T  S  K  I  Q  Q  L  Q  K  A  F  A  E  L  E  S  H  R  A  V  T  L  N  L  K  W  K  Q  L  E  E  H  F  H  G  L  E  K  S  L  K  R  R  F  T  E  L  E  D  Q  E  K  E  F  E  T  K  I  V  Q  S  K  K  I  L  E  N  R  Q  A  A  V  I  S  S  E  K  A  S  L  E  S  L  Q  E  K  R  D  A  A  V  S  A  I  T  I  A  M  E  K  H  M  K  S  N  F  M  E  P  A  G  A  T  S  E  V  Q  G  E  S  S  M  F  D  A  K  P  L  D  Y  I  P  L  E  N  T  E  D  Y  M  K  P  F  K  N  G  V  V  E  V  R  G  Y  P  D  L  V  K  L  C  Q  Y  M  D  S  E  G  L  H  K  F  I  S  D  N  R  K  N  L  A  A  V  R  E  E  I  P  S  A  L  R  T  A  V  H  P  A  C  L  V  L  D  S  L  K  G  F  Y  P  S  E  V  S  I  S  D  A  K  K  D  A  N  L  L  G  L  R  R  T  C  I  M  L  M  E  C  L  S  I  L  L  T  T  L  E  L  D  S  V  S  S  L  I  S  A  S  V  K  E  R  A  K  A  I  A  E  E  W  K  P  K  L  D  E  L  D  I  D  A  N  N  G  N  S  L  E  A  H  A  F  L  Q  L  L  A  T  F  G  I  N  S  N  F  N  Q  E  D  L  Y  K  L  I  P  M  V  S  R  R  R  Q  T  A  D  L  C  R  S  L  G  L  S  E  R  M  P   : G  V  I  D  V  L  V  N  N  G  R  H  I  D  A  V  N  L  A  F  A  F  E  L  T  D  K  F  S  P  V  S  L  L  K  S  Y  L  N  E  A  N  R  V  S  S  P  V  K  S  G  N  A  P  P  T  T  A  Q  :  N  D  V  N  E  K  Q  L  T  A  L  K  A  V  I  K  C  I  E  E  H  K  L  K  A  Q  Y  P  V  D  P  L  Q  N  R  I  H  Q  L  E  K  E  K  A  D  K  K  R  A  T  E  V  A  K  P  Q  P  K  R  P  R  A  N  C  V  G  N  G  A  R  A  T  S  V  A  S  E  K  N  F  Y  A  S  R  M  T  D  R  Y  P  Q  Y  I  Y  D  R  P  Y  A  Y  P  G  P  A  D  T  H  V  P  P  F  L  G  T  A  Y  N  F  P  P  G  H  G  N  F  F  G  N  G  Y  H  Y  Q  A  T  Y  L  H  *  L  L  D  F  A  E  D  P  F  S  C  *  C  *  P  F  C  L  T  S  T  D  S  R  A  *  L  T  S  I  L  M  *  K  L  I  L  *  C  F  N  I  C  T  L  P  F  M  L  I  F  L  H  P  S  F  H  F  G  F  S  S  Y  E  A  S  M  F  L  C  R  S  L   </first_frame>
            <second_frame>  L  S  L  T  F  L  F  C  S  F  S  L  Q  T  I  K  P  S  P  P  E  N  G  L  I  S  P  A  K  F  A  A  D  T  S  F  S  A  S  D  L  :  V  *  C  L  L  G  F  F  F  S  V  C  *  R  L  A  C  S  P  K  :  E  F  L  P  W  K  I  H  N  Q  L  Q  H  *  W  T  P  Q  P  L  R  Y  S  S  C  R  K  H  L  L  S  W  K  V  I  V  L  L  H  *  T  *  S  G  S  N  S  K  S  T  F  M  G  L  R  S  P  *  R  G  A  S  P  N  W  K  T  K  R  K  S  L  K  R  K  *  F  N  L  K  R  Y  W  R  I  G  K  L  L  L  S  L  V  R  K  L  H  L  R  A  S  K  R  K  E  M  L  P  F  L  P  L  L  L  L  W  R  S  I  *  S  L  I  S  W  N  L  L  V  L  L  L  R  C  K  V  S  R  L  C  L  M  Q  S  L  L  I  T  Y  H  L  R  I  Q  R  I  I  *  S  L  S  R  T  V  L  W  K  S  E  V  I  Q  I  *  S  N  Y  A  N  I  W  T  R  K  A  S  T  N  L  Y  L  T  T  A  R  T  W  L  L  *  G  R  K  F  H  L  L  *  E  L  L  F  I  L  P  V  W  C  W  T  H  S  R  V  F  T  P  Q  K  C  Q  F  Q  M  L  K  K  M  Q  I  F  *  V  F  A  E  L  V  L  C  *  W  N  A  L  A  F  Y  *  Q  H  W  N  W  I  L  F  Q  V  *  Y  Q  Q  V  L  R  N  G  Q  K  L  L  L  R  S  G  N  Q  S  *  M  S  L  T  L  M  Q  I  M  G  I  L  W  R  L  M  H  S  Y  S  F  L  L  L  S  V  L  T  P  T  L  T  R  K  T  C  T  S  *  Y  P  W  F  H  V  V  A  K  Q  Q  I  S  V  V  P  L  D  C  L  R  E  C  Q  :  V  L  L  T  C  W  L  I  T  G  G  I  *  M  L  L  I  *  L  L  R  L  S  *  L  T  S  F  H  L  F  H  Y  *  N  L  T  *  M  K  Q  T  E  Y  L  H  L  S  N  L  E  M  H  H  L  L  L  H  R :   M  M  S  T  R  S  S  *  L  H  *  R  L  *  *  S  A  S  K  N  I  N  L  R  R  N  T  P  W  I  L  S  R  T  G  F  T  S  W  R  K  K  R  Q  T  R  K  E  Q  L  K  L  P  N  L  N  P  R  D  L  V  P  I  V  *  E  M  E  L  E  P  L  V  L  P  L  R  R  T  S  M  L  V  E  *  L  I  G  I  H  S  T  Y  M  T  D  H  M  L  T  L  D  Q  L  T  P  T  F  R  H  S  L  V  L  P  T  T  S  L  P  D  M  A  T  S  L  E  M  V  I  T  I  R  Q  L  T  C  T  N  C  *  T  L  L  K  I  L  L  A  V  S  V  N  P  S  A  *  L  V  L  I  V  E  P  S  *  L  L  F  *  C  K  S  *  Y  C  D  V  L  I  Y  A  H  C  L  S  C  *  Y  F  F  I  L  L  F  I  L  V  F  P  H  M  K  L  R  C  F  F  V  D  P  C  </second_frame>
            <third_frame>   Y  H  L  L  S  S  F  V  P  S  L  F  K  P  *  N  P  R  H  Q  K  M  A  *  F  L  R  R  N  S  P  P  T  L  H  F  P  P  P  I  S :   C  S  V  C  *  V  S  F  F  L  S  V  E  D  L  H  V  P  Q  R :   N  F  Y  H  G  R  Y  T  I  S  C  N  T  D  G  L  H  N  L  *  D  T  A  A  A  E  S  I  C  *  A  G  K  S  S  C  C  Y  T  K  P  E  V  E  A  T  R  R  A  L  S  W  A  *  E  V  L  E  E  A  L  H  R  I  G  R  P  R  E  R  V  *  N  E  N  S  S  I  *  K  D  I  G  E  S  A  S  C  C  Y  L  *  *  E  S  F  T  *  E  P  P  R  E  K  R  C  C  R  F  C  H  Y  Y  C  Y  G  E  A  Y  E  V  *  F  H  G  T  C  W  C  Y  F  *  G  A  R  *  V  V  Y  V  *  C  K  A  S  *  L  H  T  T  *  E  Y  R  G  L  Y  E  A  F  Q  E  R  C  C  G  S  Q  R  L  S  R  F  S  Q  I  M  P  I  Y  G  L  G  R  P  P  Q  I  Y  I  *  Q  P  Q  E  P  G  C  C  K  G  G  N  S  I  C  F  E  N  C  C  S  S  C  L  F  G  A  G  L  T  Q  G  F  L  P  L  R  S  V  N  F  R  C  *  K  R  C  K  S  F  R  S  S  P  N  L  Y  Y  A  N  G  M  P  *  H  F  I  N  N  T  G  I  G  F  C  F  K  F  N  I  S  K  C  *  G  T  G  K  S  Y  C  *  G  V  E  T  K  V  R  *  A  *  H  *  C  K  *  W  E  F  F  G  G  S  C  I  L  T  A  S  C  Y  F  R  Y  *  L  Q  L  *  P  G  R  P  V  Q  A  D  T  H  G  F  T  S  S  P  N  S  R  S  L  S  F  P  W  I  V  *  E  N  A  R :   C  Y  *  R  V  G  *  *  R  E  A  Y  R  C  C  *  S  S  F  C  V  *  A  D  *  Q  V  F  T  C  F  T  T  K  I  L  L  E  *  S  K  Q  S  I  F  T  C  Q  I  W  K  C  T  T  Y  Y  C  T   : E  *  C  Q  R  E  A  A  D  C  T  E  G  C  D  K  V  H  R  R  T  *  T  *  G  A  I  P  R  G  S  S  P  E  P  D  S  P  A  G  E  R  K  G  R  Q  E  K  S  N  *  S  C  Q  T  S  T  Q  E  T  S  C  Q  L  C  R  K  W  S  S  S  H  *  C  C  L  *  E  E  L  L  C  *  *  N  D  *  *  V  S  T  V  H  I  *  P  T  I  C  L  P  W  T  S  *  H  P  R  S  A  I  P  W  Y  C  L  Q  L  P  S  R  T  W  Q  L  L  W  K  W  L  S  L  S  G  N  L  P  A  L  I  A  R  L  C  *  R  S  F  *  L  L  V  L  T  L  L  L  N  *  Y  *  *  *  S  L  V  N  F  Y  S  D  V  K  A  N  T  V  M  F  *  Y  M  H  T  A  F  H  V  N  I  S  S  S  F  F  S  F  W  F  F  L  I  *  S  F  D  V  S  L  *  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12086" stop="11963"/>
                    <exon start="10326" stop="10267"/>
                    <exon start="9231" stop="8173"/>
                    <exon start="7916" stop="7741"/>
                    <exon start="7301" stop="6885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1833</number_coding_nucleotides>
                  <number_encoded_amino_acids>611</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITYFPLLFLLSSNHKTLATRKWPNFSGEIRRRHFIFRLRSRVVFARFLFFCLLKTCMFPKGIFTMEDTQSVATLMDSTTSKIQQLQKAFAELESHRAVTLNLKWKQLEEHFHGLEKSLKRRFTELEDQEKEFETKIVQSKKILENRQAAVISSEKASLESLQEKRDAAVSAITIAMEKHMKSNFMEPAGATSEVQGESSMFDAKPLDYIPLENTEDYMKPFKNGVVEVRGYPDLVKLCQYMDSEGLHKFISDNRKNLAAVREEIPSALRTAVHPACLVLDSLKGFYPSEVSISDAKKDANLLGLRRTCIMLMECLSILLTTLELDSVSSLISASVKERAKAIAEEWKPKLDELDIDANNGNSLEAHAFLQLLATFGINSNFNQEDLYKLIPMVSRRRQTADLCRSLGLSERMPGVIDVLVNNGRHIDAVNLAFAFELTDKFSPVSLLKSYLNEANRVSSPVKSGNAPPTTAQNDVNEKQLTALKAVIKCIEEHKLKAQYPVDPLQNRIHQLEKEKADKKRATEVAKPQPKRPRANCVGNGARATSVASEKNFYASRMTDRYPQYIYDRPYAYPGPADTHVPPFLGTAYNFPPGHGNFFGNGYHYQATYLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9250" e_stop="8173"/>
            <exon e_start="7916" e_stop="7741"/>
            <exon e_start="7301" e_stop="6664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9250" e_stop="8173" e_length="1078"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8172" i_stop="7917" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7916" e_stop="7741" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="7740" i_stop="7302" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7301" e_stop="6664" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9250" stop="8736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9231" stop="8752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9150" stop="8636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8983" stop="8509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8972" stop="8510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8919" stop="8261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8852" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8833" stop="8185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8825" stop="8435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8804" stop="8173"/>
              <exon start="7916" stop="7794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8705" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8569" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8562" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8527" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="6960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8488" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8477" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8427" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8404" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8386" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8378" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8325" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="6903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8321" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8173"/>
              <exon start="7916" stop="7741"/>
              <exon start="7301" stop="7097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7910" stop="7741"/>
              <exon start="7301" stop="6745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599887" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7823" stop="7741"/>
              <exon start="7301" stop="6761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588863" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7762" stop="7741"/>
              <exon start="7301" stop="6744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443092" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7761" stop="7741"/>
              <exon start="7301" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7760" stop="7741"/>
              <exon start="7301" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7293" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7292" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7290" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7290" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7208" stop="6664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7183" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7167" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7165" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7121" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7090" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7087" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7057" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7018" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCTCTCAATGCTTTTAGGAATTTTTACCATGGAAGATACACAATCAGTTGCAACACTGATGGACTCCACAACCTCTAAGATACAGCAGCTGCAGAAAGCATTTGCTGAGCTGGAAAGTCATCGTGCTGTTACACTAAACCTGAAGTGGAAGCAACTCGAAGAGCACTTTCATGGGCTTGAGAAGTCCTTGAAGAGGCGCTTCACCGAATTGGAAGACCAAGAGAAAGAGTTTGAAACGAAAATAGTTCAATCTAAAAAGATATTGGAGAATCGGCAAGCTGCTGTTATCTCTAGTGAGAAAGCTTCACTTGAGAGCCTCCAAGAGAAAAGAGATGCTGCCGTTTCTGCCATTACTATTGCTATGGAGAAGCATATGAAGTCTAATTTCATGGAACCTGCTGGTGCTACTTCTGAGGTGCAAGGTGAGTCGTCTATGTTTGATGCAAAGCCTCTTGATTACATACCACTTGAGAATACAGAGGATTATATGAAGCCTTTCAAGAACGGTGTTGTGGAAGTCAGAGGTTATCCAGATTTAGTCAAATTATGCCAATATATGGACTCGGAAGGCCTCCACAAATTTATATCTGACAACCGCAAGAACCTGGCTGCTGTAAGGGAGGAAATTCCATCTGCTTTGAGAACTGCTGTTCATCCTGCCTGTTTGGTGCTGGACTCACTCAAGGGTTTTTACCCCTCAGAAGTGTCAATTTCAGATGCTAAAAAAGATGCAAATCTTTTAGGTCTTCGCCGAACTTGTATTATGCTAATGGAATGCCTTAGCATTTTATTAACAACACTGGAATTGGATTCTGTTTCAAGTTTAATATCAGCAAGTGTTAAGGAACGGGCAAAAGCTATTGCTGAGGAGTGGAAACCAAAGTTAGATGAGCTTGACATTGATGCAAATAATGGGAATTCTTTGGAGGCTCATGCATTCTTACAGCTTCTTGCTACTTTCGGTATTAACTCCAACTTTAACCAGGAAGACCTGTACAAGCTGATACCCATGGTTTCACGTCGTCGCCAAACAGCAGATCTCTGTCGTTCCCTTGGATTGTCTGAGAGAATGCCAG : GTGTTATTGACGTGTTGGTTAATAACGGGAGGCATATAGATGCTGTTAATCTAGCTTTTGCGTTTGAGCTGACTGACAAGTTTTCACCTGTTTCACTACTAAAATCTTACTTGAATGAAGCAAACAGAGTATCTTCACCTGTCAAATCTGGAAATGCACCACCTACTACTGCACAG : AATGATGTCAACGAGAAGCAGCTGACTGCACTGAAGGCTGTGATAAAGTGCATCGAAGAACATAAACTTAAGGCGCAATACCCCGTGGATCCTCTCCAGAACCGGATTCACCAGCTGGAGAAAGAAAAGGCAGACAAGAAAAGAGCAACTGAAGTTGCCAAACCTCAACCCAAGAGACCTCGTGCCAATTGTGTAGGAAATGGAGCTCGAGCCACTAGTGTTGCCTCTGAGAAGAACTTCTATGCTAGTAGAATGACTGATAGGTATCCACAGTACATATATGACCGACCATATGCTTACCCTGGACCAGCTGACACCCACGTTCCGCCATTCCTTGGTACTGCCTACAACTTCCCTCCCGGACATGGCAACTTCTTTGGAAATGGTTATCACTATCAGGCAACTTACCTGCACTAATTGCTAGACTTTGCTGAAGATCCTTTTAGCTGTTAGTGTTAACCCTTCTGCTTAACTAGTACTGATAGTAGAGCCTAGTTAACTTCTATTCTGATGTAAAAGCTAATACTGTGATGTTTTAATATATGCACACTGCCTTTCATGTTAATATTTCTTCATCCTTCTTTTCATTTTGGTTTTTCCTCATATGAAGCTTCGATGTTTCTTTGTAGATCCTTGCA</gDNA_template>
            <first_frame> H  L  S  M  L  L  G  I  F  T  M  E  D  T  Q  S  V  A  T  L  M  D  S  T  T  S  K  I  Q  Q  L  Q  K  A  F  A  E  L  E  S  H  R  A  V  T  L  N  L  K  W  K  Q  L  E  E  H  F  H  G  L  E  K  S  L  K  R  R  F  T  E  L  E  D  Q  E  K  E  F  E  T  K  I  V  Q  S  K  K  I  L  E  N  R  Q  A  A  V  I  S  S  E  K  A  S  L  E  S  L  Q  E  K  R  D  A  A  V  S  A  I  T  I  A  M  E  K  H  M  K  S  N  F  M  E  P  A  G  A  T  S  E  V  Q  G  E  S  S  M  F  D  A  K  P  L  D  Y  I  P  L  E  N  T  E  D  Y  M  K  P  F  K  N  G  V  V  E  V  R  G  Y  P  D  L  V  K  L  C  Q  Y  M  D  S  E  G  L  H  K  F  I  S  D  N  R  K  N  L  A  A  V  R  E  E  I  P  S  A  L  R  T  A  V  H  P  A  C  L  V  L  D  S  L  K  G  F  Y  P  S  E  V  S  I  S  D  A  K  K  D  A  N  L  L  G  L  R  R  T  C  I  M  L  M  E  C  L  S  I  L  L  T  T  L  E  L  D  S  V  S  S  L  I  S  A  S  V  K  E  R  A  K  A  I  A  E  E  W  K  P  K  L  D  E  L  D  I  D  A  N  N  G  N  S  L  E  A  H  A  F  L  Q  L  L  A  T  F  G  I  N  S  N  F  N  Q  E  D  L  Y  K  L  I  P  M  V  S  R  R  R  Q  T  A  D  L  C  R  S  L  G  L  S  E  R  M  P   : G  V  I  D  V  L  V  N  N  G  R  H  I  D  A  V  N  L  A  F  A  F  E  L  T  D  K  F  S  P  V  S  L  L  K  S  Y  L  N  E  A  N  R  V  S  S  P  V  K  S  G  N  A  P  P  T  T  A  Q  :  N  D  V  N  E  K  Q  L  T  A  L  K  A  V  I  K  C  I  E  E  H  K  L  K  A  Q  Y  P  V  D  P  L  Q  N  R  I  H  Q  L  E  K  E  K  A  D  K  K  R  A  T  E  V  A  K  P  Q  P  K  R  P  R  A  N  C  V  G  N  G  A  R  A  T  S  V  A  S  E  K  N  F  Y  A  S  R  M  T  D  R  Y  P  Q  Y  I  Y  D  R  P  Y  A  Y  P  G  P  A  D  T  H  V  P  P  F  L  G  T  A  Y  N  F  P  P  G  H  G  N  F  F  G  N  G  Y  H  Y  Q  A  T  Y  L  H  *  L  L  D  F  A  E  D  P  F  S  C  *  C  *  P  F  C  L  T  S  T  D  S  R  A  *  L  T  S  I  L  M  *  K  L  I  L  *  C  F  N  I  C  T  L  P  F  M  L  I  F  L  H  P  S  F  H  F  G  F  S  S  Y  E  A  S  M  F  L  C  R  S  L   </first_frame>
            <second_frame>  I  S  Q  C  F  *  E  F  L  P  W  K  I  H  N  Q  L  Q  H  *  W  T  P  Q  P  L  R  Y  S  S  C  R  K  H  L  L  S  W  K  V  I  V  L  L  H  *  T  *  S  G  S  N  S  K  S  T  F  M  G  L  R  S  P  *  R  G  A  S  P  N  W  K  T  K  R  K  S  L  K  R  K  *  F  N  L  K  R  Y  W  R  I  G  K  L  L  L  S  L  V  R  K  L  H  L  R  A  S  K  R  K  E  M  L  P  F  L  P  L  L  L  L  W  R  S  I  *  S  L  I  S  W  N  L  L  V  L  L  L  R  C  K  V  S  R  L  C  L  M  Q  S  L  L  I  T  Y  H  L  R  I  Q  R  I  I  *  S  L  S  R  T  V  L  W  K  S  E  V  I  Q  I  *  S  N  Y  A  N  I  W  T  R  K  A  S  T  N  L  Y  L  T  T  A  R  T  W  L  L  *  G  R  K  F  H  L  L  *  E  L  L  F  I  L  P  V  W  C  W  T  H  S  R  V  F  T  P  Q  K  C  Q  F  Q  M  L  K  K  M  Q  I  F  *  V  F  A  E  L  V  L  C  *  W  N  A  L  A  F  Y  *  Q  H  W  N  W  I  L  F  Q  V  *  Y  Q  Q  V  L  R  N  G  Q  K  L  L  L  R  S  G  N  Q  S  *  M  S  L  T  L  M  Q  I  M  G  I  L  W  R  L  M  H  S  Y  S  F  L  L  L  S  V  L  T  P  T  L  T  R  K  T  C  T  S  *  Y  P  W  F  H  V  V  A  K  Q  Q  I  S  V  V  P  L  D  C  L  R  E  C  Q  :  V  L  L  T  C  W  L  I  T  G  G  I  *  M  L  L  I  *  L  L  R  L  S  *  L  T  S  F  H  L  F  H  Y  *  N  L  T  *  M  K  Q  T  E  Y  L  H  L  S  N  L  E  M  H  H  L  L  L  H  R :   M  M  S  T  R  S  S  *  L  H  *  R  L  *  *  S  A  S  K  N  I  N  L  R  R  N  T  P  W  I  L  S  R  T  G  F  T  S  W  R  K  K  R  Q  T  R  K  E  Q  L  K  L  P  N  L  N  P  R  D  L  V  P  I  V  *  E  M  E  L  E  P  L  V  L  P  L  R  R  T  S  M  L  V  E  *  L  I  G  I  H  S  T  Y  M  T  D  H  M  L  T  L  D  Q  L  T  P  T  F  R  H  S  L  V  L  P  T  T  S  L  P  D  M  A  T  S  L  E  M  V  I  T  I  R  Q  L  T  C  T  N  C  *  T  L  L  K  I  L  L  A  V  S  V  N  P  S  A  *  L  V  L  I  V  E  P  S  *  L  L  F  *  C  K  S  *  Y  C  D  V  L  I  Y  A  H  C  L  S  C  *  Y  F  F  I  L  L  F  I  L  V  F  P  H  M  K  L  R  C  F  F  V  D  P  C  </second_frame>
            <third_frame>   S  L  N  A  F  R  N  F  Y  H  G  R  Y  T  I  S  C  N  T  D  G  L  H  N  L  *  D  T  A  A  A  E  S  I  C  *  A  G  K  S  S  C  C  Y  T  K  P  E  V  E  A  T  R  R  A  L  S  W  A  *  E  V  L  E  E  A  L  H  R  I  G  R  P  R  E  R  V  *  N  E  N  S  S  I  *  K  D  I  G  E  S  A  S  C  C  Y  L  *  *  E  S  F  T  *  E  P  P  R  E  K  R  C  C  R  F  C  H  Y  Y  C  Y  G  E  A  Y  E  V  *  F  H  G  T  C  W  C  Y  F  *  G  A  R  *  V  V  Y  V  *  C  K  A  S  *  L  H  T  T  *  E  Y  R  G  L  Y  E  A  F  Q  E  R  C  C  G  S  Q  R  L  S  R  F  S  Q  I  M  P  I  Y  G  L  G  R  P  P  Q  I  Y  I  *  Q  P  Q  E  P  G  C  C  K  G  G  N  S  I  C  F  E  N  C  C  S  S  C  L  F  G  A  G  L  T  Q  G  F  L  P  L  R  S  V  N  F  R  C  *  K  R  C  K  S  F  R  S  S  P  N  L  Y  Y  A  N  G  M  P  *  H  F  I  N  N  T  G  I  G  F  C  F  K  F  N  I  S  K  C  *  G  T  G  K  S  Y  C  *  G  V  E  T  K  V  R  *  A  *  H  *  C  K  *  W  E  F  F  G  G  S  C  I  L  T  A  S  C  Y  F  R  Y  *  L  Q  L  *  P  G  R  P  V  Q  A  D  T  H  G  F  T  S  S  P  N  S  R  S  L  S  F  P  W  I  V  *  E  N  A  R :   C  Y  *  R  V  G  *  *  R  E  A  Y  R  C  C  *  S  S  F  C  V  *  A  D  *  Q  V  F  T  C  F  T  T  K  I  L  L  E  *  S  K  Q  S  I  F  T  C  Q  I  W  K  C  T  T  Y  Y  C  T   : E  *  C  Q  R  E  A  A  D  C  T  E  G  C  D  K  V  H  R  R  T  *  T  *  G  A  I  P  R  G  S  S  P  E  P  D  S  P  A  G  E  R  K  G  R  Q  E  K  S  N  *  S  C  Q  T  S  T  Q  E  T  S  C  Q  L  C  R  K  W  S  S  S  H  *  C  C  L  *  E  E  L  L  C  *  *  N  D  *  *  V  S  T  V  H  I  *  P  T  I  C  L  P  W  T  S  *  H  P  R  S  A  I  P  W  Y  C  L  Q  L  P  S  R  T  W  Q  L  L  W  K  W  L  S  L  S  G  N  L  P  A  L  I  A  R  L  C  *  R  S  F  *  L  L  V  L  T  L  L  L  N  *  Y  *  *  *  S  L  V  N  F  Y  S  D  V  K  A  N  T  V  M  F  *  Y  M  H  T  A  F  H  V  N  I  S  S  S  F  F  S  F  W  F  F  L  I  *  S  F  D  V  S  L  *  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9250" stop="8173"/>
                    <exon start="7916" stop="7741"/>
                    <exon start="7301" stop="6885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1668</number_coding_nucleotides>
                  <number_encoded_amino_acids>556</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSMLLGIFTMEDTQSVATLMDSTTSKIQQLQKAFAELESHRAVTLNLKWKQLEEHFHGLEKSLKRRFTELEDQEKEFETKIVQSKKILENRQAAVISSEKASLESLQEKRDAAVSAITIAMEKHMKSNFMEPAGATSEVQGESSMFDAKPLDYIPLENTEDYMKPFKNGVVEVRGYPDLVKLCQYMDSEGLHKFISDNRKNLAAVREEIPSALRTAVHPACLVLDSLKGFYPSEVSISDAKKDANLLGLRRTCIMLMECLSILLTTLELDSVSSLISASVKERAKAIAEEWKPKLDELDIDANNGNSLEAHAFLQLLATFGINSNFNQEDLYKLIPMVSRRRQTADLCRSLGLSERMPGVIDVLVNNGRHIDAVNLAFAFELTDKFSPVSLLKSYLNEANRVSSPVKSGNAPPTTAQNDVNEKQLTALKAVIKCIEEHKLKAQYPVDPLQNRIHQLEKEKADKKRATEVAKPQPKRPRANCVGNGARATSVASEKNFYASRMTDRYPQYIYDRPYAYPGPADTHVPPFLGTAYNFPPGHGNFFGNGYHYQATYLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6753" PGL_stop="7090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6753" e_stop="7090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="6753" e_stop="7090" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6753" stop="7090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGCATATATTAAAACATCACAGTATTAGCTTTTACATCAGAATAGAAGTTAACTAGGCTCTACTATCAGTACTAGTTAAGCAGAAGGGTTAACACTAACAGCTAAAAGGATCTTCAGCAAAGTCTAGCAATTAGTGCAGGTAAGTTGCCTGATAGTGATAACCATTTCCAAAGAAGTTGCCATGTCCGGGAGGGAAGTTGTAGGCAGTACCAAGGAATGGCGGAACGTGGGTGTCAGCTGGTCCAGGGTAAGCATATGGTCGGTCATATATGTACTGTGGATACCTATCAGTCATTCTACTAGCATAGAAGTTCTTCTCAGAGGCAACACTAGTGG</gDNA_template>
            <first_frame> C  A  Y  I  K  T  S  Q  Y  *  L  L  H  Q  N  R  S  *  L  G  S  T  I  S  T  S  *  A  E  G  L  T  L  T  A  K  R  I  F  S  K  V  *  Q  L  V  Q  V  S  C  L  I  V  I  T  I  S  K  E  V  A  M  S  G  R  E  V  V  G  S  T  K  E  W  R  N  V  G  V  S  W  S  R  V  S  I  W  S  V  I  Y  V  L  W  I  P  I  S  H  S  T  S  I  E  V  L  L  R  G  N  T  S   </first_frame>
            <second_frame>  V  H  I  L  K  H  H  S  I  S  F  Y  I  R  I  E  V  N  *  A  L  L  S  V  L  V  K  Q  K  G  *  H  *  Q  L  K  G  S  S  A  K  S  S  N  *  C  R  *  V  A  *  *  *  *  P  F  P  K  K  L  P  C  P  G  G  K  L  *  A  V  P  R  N  G  G  T  W  V  S  A  G  P  G  *  A  Y  G  R  S  Y  M  Y  C  G  Y  L  S  V  I  L  L  A  *  K  F  F  S  E  A  T  L  V  </second_frame>
            <third_frame>   C  I  Y  *  N  I  T  V  L  A  F  T  S  E  *  K  L  T  R  L  Y  Y  Q  Y  *  L  S  R  R  V  N  T  N  S  *  K  D  L  Q  Q  S  L  A  I  S  A  G  K  L  P  D  S  D  N  H  F  Q  R  S  C  H  V  R  E  G  S  C  R  Q  Y  Q  G  M  A  E  R  G  C  Q  L  V  Q  G  K  H  M  V  G  H  I  C  T  V  D  T  Y  Q  S  F  Y  *  H  R  S  S  S  Q  R  Q  H  *  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6882" stop="7088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLVQVSCLIVITISKEVAMSGREVVGSTKEWRNVGVSWSRVSIWSVIYVLWIPISHSTSIEVLLRGNTS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6860" stop="7057"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLQQSLAISAGKLPDSDNHFQRSCHVREGSCRQYQGMAERGCQLVQGKHMVGHICTVDTYQSFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20254" PGL_stop="20722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20254" e_stop="20722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="20254" e_stop="20722" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20254" stop="20722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAATGAACTTAGCTCACAACAAAATCCATTGTTTGGTAATACCATTTCCAACACAAGGCCACATAAATCCAATGCTTCAATTCTCCAAAAGATTACAACACAAAGGCATAGAGATCACACTTGTTCCTACTATTTACATATTCAACAAAAGCATGCAAGAATTGACAAGTTCCATCACAATTGAGCCAATTTCTGATGGATATGATGATGTGAATGGACTTTTTTGTGCTAAATCCATTGAAACCTACTTAGAAAGTCATCAAATAGTTGGATCACAAGCTCTTATTCAACTCATTGAAAAGTTGAAAAACAAAGGAAATCCTATAAATTGTGTCATTTATGATTCATTCATGCCTTGGATTCTTGATGTTGCAAAAATGTTTGGACTTGTAAGTGGTGTTTTCTTCACTATGTCATGTGCTGTTGAAAATATTTTTTATCATATCCAACTAAAGGAACTAAAGC</gDNA_template>
            <first_frame> E  K  M  N  L  A  H  N  K  I  H  C  L  V  I  P  F  P  T  Q  G  H  I  N  P  M  L  Q  F  S  K  R  L  Q  H  K  G  I  E  I  T  L  V  P  T  I  Y  I  F  N  K  S  M  Q  E  L  T  S  S  I  T  I  E  P  I  S  D  G  Y  D  D  V  N  G  L  F  C  A  K  S  I  E  T  Y  L  E  S  H  Q  I  V  G  S  Q  A  L  I  Q  L  I  E  K  L  K  N  K  G  N  P  I  N  C  V  I  Y  D  S  F  M  P  W  I  L  D  V  A  K  M  F  G  L  V  S  G  V  F  F  T  M  S  C  A  V  E  N  I  F  Y  H  I  Q  L  K  E  L  K  </first_frame>
            <second_frame>  K  K  *  T  *  L  T  T  K  S  I  V  W  *  Y  H  F  Q  H  K  A  T  *  I  Q  C  F  N  S  P  K  D  Y  N  T  K  A  *  R  S  H  L  F  L  L  F  T  Y  S  T  K  A  C  K  N  *  Q  V  P  S  Q  L  S  Q  F  L  M  D  M  M  M  *  M  D  F  F  V  L  N  P  L  K  P  T  *  K  V  I  K  *  L  D  H  K  L  L  F  N  S  L  K  S  *  K  T  K  E  I  L  *  I  V  S  F  M  I  H  S  C  L  G  F  L  M  L  Q  K  C  L  D  L  *  V  V  F  S  S  L  C  H  V  L  L  K  I  F  F  I  I  S  N  *  R  N  *  S </second_frame>
            <third_frame>   K  N  E  L  S  S  Q  Q  N  P  L  F  G  N  T  I  S  N  T  R  P  H  K  S  N  A  S  I  L  Q  K  I  T  T  Q  R  H  R  D  H  T  C  S  Y  Y  L  H  I  Q  Q  K  H  A  R  I  D  K  F  H  H  N  *  A  N  F  *  W  I  *  *  C  E  W  T  F  L  C  *  I  H  *  N  L  L  R  K  S  S  N  S  W  I  T  S  S  Y  S  T  H  *  K  V  E  K  Q  R  K  S  Y  K  L  C  H  L  *  F  I  H  A  L  D  S  *  C  C  K  N  V  W  T  C  K  W  C  F  L  H  Y  V  M  C  C  *  K  Y  F  L  S  Y  P  T  K  G  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20254" stop="20721"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMNLAHNKIHCLVIPFPTQGHINPMLQFSKRLQHKGIEITLVPTIYIFNKSMQELTSSITIEPISDGYDDVNGLFCAKSIETYLESHQIVGSQALIQLIEKLKNKGNPINCVIYDSFMPWILDVAKMFGLVSGVFFTMSCAVENIFYHIQLKELK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31007" PGL_stop="23690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31007" e_stop="30892"/>
            <exon e_start="27929" e_stop="27857"/>
            <exon e_start="27083" e_stop="26794"/>
            <exon e_start="26610" e_stop="26383"/>
            <exon e_start="24872" e_stop="24813"/>
            <exon e_start="24674" e_stop="24509"/>
            <exon e_start="24009" e_stop="23690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.615" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.967"/>
          <exon-intron don_prob="0.853" acc_prob="0.996" e_score="0.994"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31007" e_stop="30892" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.615">
            <gDNA_intron_boundary i_start="30891" i_stop="27930" i_length="2962"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27929" e_stop="27857" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.932">
            <gDNA_intron_boundary i_start="27856" i_stop="27084" i_length="773"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27083" e_stop="26794" e_length="290"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="26793" i_stop="26611" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="26610" e_stop="26383" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26382" i_stop="24873" i_length="1510"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="24872" e_stop="24813" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24812" i_stop="24675" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="24674" e_stop="24509" e_length="166"/>
          </exon>
          <intron i_serial="6" don_prob="0.853" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24508" i_stop="24010" i_length="499"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="24009" e_stop="23690" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31007" stop="30892"/>
              <exon start="27929" stop="27857"/>
              <exon start="27083" stop="26794"/>
              <exon start="26610" stop="26383"/>
              <exon start="24872" stop="24813"/>
              <exon start="24674" stop="24580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27876" stop="27857"/>
              <exon start="27083" stop="26794"/>
              <exon start="26610" stop="26557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26425" stop="26383"/>
              <exon start="24872" stop="24813"/>
              <exon start="24674" stop="24509"/>
              <exon start="24009" stop="23690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240346" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCACCTCGGCGAAAGAGGAATTAGGGTTTTAATAGCATCTCAATTGGAGGGCAAAATAGATTTGTGCTTCGACGGAACCCTAATTTGCTTCTCCGATCACTCTGTCAGATTGA : TTCCCAGGAAATGATGCTCTATCTTATGCTGGGGGCTAATTGATGGATCCAGACAGCAAGAAGTTTGGAAGAG : GGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCG : TCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGACAAGGAGAAGAAGCATAAGAAGCACAAGGATAAAGACAAGGAGAAGGACAAAGAGCATAAGAAGCACAAACACCGTCATAAAGATCGAAGTAAAGACAAGGATAAAGAGAAAAAGAAAGATAAAACTGGCCGTCATGATTCTGGTGCTGACCTTTCAAAGAAACATCATGAAAAG : AGAAAGAAGCATGAGGGCAAGGAGGATCTTAATGATGTTAACAAACACAAGAGAAACAAG : CACACGAGCTAAAAGATTGATGAAATTGGGGCAGTAAAGGTTACGTGCTGAAATGTCACATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCAGTTAAGAATTTGGAGGAATCCTTTTCTTATTGTAAAATATCTAAG : AATAGCTTCTGGACAAACTAAAGAATGGCAAGAGGGTGAATGCAGCTGTTGAAACTAGATTTTAGTGAAATGTACATAGTGCTGAAAAACAACCTCATTGTATTATACTATATAAGAGCTTGTTTGACATTGTTTATTTTCATAAGCACTTTCTTTTTTGGTAAACTAAAGTTTTTATTTACCAAATGGATAATGTACAGCTTAAGAAAAGGGAACAAAAACAAAACTCTAGCTGGGAAGGACTTATTGCTCCTATATGCATGTGTAATATAGAGTAACTATTATAAATAGTATTTCAACTACCTTTATTTATATTTCAA</gDNA_template>
            <first_frame> I  S  P  R  R  K  R  N  *  G  F  N  S  I  S  I  G  G  Q  N  R  F  V  L  R  R  N  P  N  L  L  L  R  S  L  C  Q  I  D :   S  Q  E  M  M  L  Y  L  M  L  G  A  N  *  W  I  Q  T  A  R  S  L  E  E  :  G  Q  E  S  L  Q  V  R  W  I  L  L  I  T  T  S  C  C  L  I  T  S  T  S  A  R  S  L  F  H  C  Q  F  Q  I  H  A  T  F  T  M  L  W  E  T  E  R  L  G  K  G  K  G  C  S  W  I  S  L  Y  M  I  R  L  F  *  K  R  Q  I  H  A  S  N  H  L  S  *  M  L  L  M  K  L  F  N  Y  V  K  Q  L  Q  L  F  C  L  R :   L  K  K  G  S  P  L  *  L  E  S  L  K  V  S  R  K  T  R  R  R  S  I  R  S  T  R  I  K  T  R  R  R  T  K  S  I  R  S  T  N  T  V  I  K  I  E  V  K  T  R  I  K  R  K  R  K  I  K  L  A  V  M  I  L  V  L  T  F  Q  R  N  I  M  K  R :   E  R  S  M  R  A  R  R  I  L  M  M  L  T  N  T  R  E  T  S :   T  R  A  K  R  L  M  K  L  G  Q  *  R  L  R  A  E  M  S  H  V  L  L  *  F  T  V  L  M  C  C  Y  N  L  L  F  S  C  A  A  V  K  N  L  E  E  S  F  S  Y  C  K  I  S  K  :  N  S  F  W  T  N  *  R  M  A  R  G  *  M  Q  L  L  K  L  D  F  S  E  M  Y  I  V  L  K  N  N  L  I  V  L  Y  Y  I  R  A  C  L  T  L  F  I  F  I  S  T  F  F  F  G  K  L  K  F  L  F  T  K  W  I  M  Y  S  L  R  K  G  N  K  N  K  T  L  A  G  K  D  L  L  L  L  Y  A  C  V  I  *  S  N  Y  Y  K  *  Y  F  N  Y  L  Y  L  Y  F   </first_frame>
            <second_frame>  S  H  L  G  E  R  G  I  R  V  L  I  A  S  Q  L  E  G  K  I  D  L  C  F  D  G  T  L  I  C  F  S  D  H  S  V  R  L   : I  P  R  K  *  C  S  I  L  C  W  G  L  I  D  G  S  R  Q  Q  E  V  W  K  R :   A  K  R  A  C  R  C  G  G  S  Y  *  S  L  Q  V  V  A  S  S  R  V  L  L  Q  E  A  S  S  I  V  N  F  R  Y  T  L  P  S  Q  C  C  G  R  Q  R  D  *  E  R  G  R  D  A  V  G  S  A  Y  T  *  Y  V  F  F  K  R  D  K  F  T  H  P  T  I  *  V  R  C  S  *  *  S  F  S  T  T  *  S  S  S  N  C  S  A  S   : V  *  K  R  D  P  H  C  S  W  K  V  *  K  *  V  E  R  Q  G  E  E  A  *  E  A  Q  G  *  R  Q  G  E  G  Q  R  A  *  E  A  Q  T  P  S  *  R  S  K  *  R  Q  G  *  R  E  K  E  R  *  N  W  P  S  *  F  W  C  *  P  F  K  E  T  S  *  K   : E  K  E  A  *  G  Q  G  G  S  *  *  C  *  Q  T  Q  E  K  Q   : A  H  E  L  K  D  *  *  N  W  G  S  K  G  Y  V  L  K  C  H  M  C  C  Y  N  L  L  F  S  C  A  A  I  I  Y  C  S  H  V  L  Q  L  R  I  W  R  N  P  F  L  I  V  K  Y  L  R :   I  A  S  G  Q  T  K  E  W  Q  E  G  E  C  S  C  *  N  *  I  L  V  K  C  T  *  C  *  K  T  T  S  L  Y  Y  T  I  *  E  L  V  *  H  C  L  F  S  *  A  L  S  F  L  V  N  *  S  F  Y  L  P  N  G  *  C  T  A  *  E  K  G  T  K  T  K  L  *  L  G  R  T  Y  C  S  Y  M  H  V  *  Y  R  V  T  I  I  N  S  I  S  T  T  F  I  Y  I  S  </second_frame>
            <third_frame>   L  T  S  A  K  E  E  L  G  F  *  *  H  L  N  W  R  A  K  *  I  C  A  S  T  E  P  *  F  A  S  P  I  T  L  S  D  *  :  F  P  G  N  D  A  L  S  Y  A  G  G  *  L  M  D  P  D  S  K  K  F  G  R   : G  P  R  E  L  A  G  A  V  D  L  I  N  H  Y  K  L  L  P  H  H  E  Y  F  C  K  K  P  L  P  L  S  I  S  D  T  R  Y  L  H  N  V  V  G  D  R  E  I  R  K  G  E  G  M  Q  L  D  Q  L  I  H  D  T  S  F  L  K  E  T  N  S  R  I  Q  P  F  E  L  D  A  L  N  E  A  F  Q  L  R  E  A  A  P  I  V  L  P  P  :  S  E  K  G  I  P  T  V  A  G  K  S  K  S  E  S  K  D  K  E  K  K  H  K  K  H  K  D  K  D  K  E  K  D  K  E  H  K  K  H  K  H  R  H  K  D  R  S  K  D  K  D  K  E  K  K  K  D  K  T  G  R  H  D  S  G  A  D  L  S  K  K  H  H  E  K  :  R  K  K  H  E  G  K  E  D  L  N  D  V  N  K  H  K  R  N  K  :  H  T  S  *  K  I  D  E  I  G  A  V  K  V  T  C  *  N  V  T  C  A  A  I  I  Y  C  S  H  V  L  L  *  F  T  V  L  M  C  C  S  *  E  F  G  G  I  L  F  L  L  *  N  I  *   : E  *  L  L  D  K  L  K  N  G  K  R  V  N  A  A  V  E  T  R  F  *  *  N  V  H  S  A  E  K  Q  P  H  C  I  I  L  Y  K  S  L  F  D  I  V  Y  F  H  K  H  F  L  F  W  *  T  K  V  F  I  Y  Q  M  D  N  V  Q  L  K  K  R  E  Q  K  Q  N  S  S  W  E  G  L  I  A  P  I  C  M  C  N  I  E  *  L  L  *  I  V  F  Q  L  P  L  F  I  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27890" stop="27857"/>
                    <exon start="27083" stop="26794"/>
                    <exon start="26610" stop="26383"/>
                    <exon start="24872" stop="24813"/>
                    <exon start="24674" stop="24663"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMDPDSKKFGRGPRELAGAVDLINHYKLLPHHEYFCKKPLPLSISDTRYLHNVVGDREIRKGEGMQLDQLIHDTSFLKETNSRIQPFELDALNEAFQLREAAPIVLPPSEKGIPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKEKKKDKTGRHDSGADLSKKHHEKRKKHEGKEDLNDVNKHKRNKHTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23970" stop="23737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQLLKLDFSEMYIVLKNNLIVLYYIRACLTLFIFISTFFFGKLKFLFTKWIMYSLRKGNKNKTLAGKDLLLLYACVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24651" stop="24509"/>
                    <exon start="24009" stop="23958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWGSKGYVLKCHMCCYNLLFSCAAIIYCSHVLQLRIWRNPFLIVKYLRIASGQTKEWQEGECSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27872" e_stop="27857"/>
            <exon e_start="27393" e_stop="27313"/>
            <exon e_start="27083" e_stop="26794"/>
            <exon e_start="26610" e_stop="26383"/>
            <exon e_start="24872" e_stop="24813"/>
            <exon e_start="24674" e_stop="24509"/>
            <exon e_start="24009" e_stop="23690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.673" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.967"/>
          <exon-intron don_prob="0.853" acc_prob="0.996" e_score="0.994"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27872" e_stop="27857" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.673">
            <gDNA_intron_boundary i_start="27856" i_stop="27394" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27393" e_stop="27313" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="27312" i_stop="27084" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27083" e_stop="26794" e_length="290"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="26793" i_stop="26611" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="26610" e_stop="26383" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26382" i_stop="24873" i_length="1510"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="24872" e_stop="24813" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24812" i_stop="24675" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="24674" e_stop="24509" e_length="166"/>
          </exon>
          <intron i_serial="6" don_prob="0.853" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24508" i_stop="24010" i_length="499"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="24009" e_stop="23690" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27872" stop="27857"/>
              <exon start="27393" stop="27313"/>
              <exon start="27083" stop="26794"/>
              <exon start="26610" stop="26415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26425" stop="26383"/>
              <exon start="24872" stop="24813"/>
              <exon start="24674" stop="24509"/>
              <exon start="24009" stop="23690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240346" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGTTTGGAAGAG : GGTTACGAGTTTGGTAACAAGATCTCACAAATTACTAAAATATGCTTGAAGTCGTGCCAAAGTGGTCACAGTTTGCACACA : GGCCAAGAGAGCTTGCAGGTGCGGTGGATCTTATTAATCACTACAAGTTGTTGCCTCATCACGAGTACTTCTGCAAGAAGCCTCTTCCATTGTCAATTTCAGATACACGCTACCTTCACAATGTTGTGGGAGACAGAGAGATTAGGAAAGGGGAAGGGATGCAGTTGGATCAGCTTATACATGATACGTCTTTTTTAAAAGAGACAAATTCACGCATCCAACCATTTGAGTTAGATGCTCTTAATGAAGCTTTTCAACTACGTGAAGCAGCTCCAATTGTTCTGCCTCCG : TCTGAAAAAGGGATCCCCACTGTAGCTGGAAAGTCTAAAAGTGAGTCGAAAGACAAGGAGAAGAAGCATAAGAAGCACAAGGATAAAGACAAGGAGAAGGACAAAGAGCATAAGAAGCACAAACACCGTCATAAAGATCGAAGTAAAGACAAGGATAAAGAGAAAAAGAAAGATAAAACTGGCCGTCATGATTCTGGTGCTGACCTTTCAAAGAAACATCATGAAAAG : AGAAAGAAGCATGAGGGCAAGGAGGATCTTAATGATGTTAACAAACACAAGAGAAACAAG : CACACGAGCTAAAAGATTGATGAAATTGGGGCAGTAAAGGTTACGTGCTGAAATGTCACATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCTATAATTTACTGTTCTCATGTGCTGCAGTTAAGAATTTGGAGGAATCCTTTTCTTATTGTAAAATATCTAAG : AATAGCTTCTGGACAAACTAAAGAATGGCAAGAGGGTGAATGCAGCTGTTGAAACTAGATTTTAGTGAAATGTACATAGTGCTGAAAAACAACCTCATTGTATTATACTATATAAGAGCTTGTTTGACATTGTTTATTTTCATAAGCACTTTCTTTTTTGGTAAACTAAAGTTTTTATTTACCAAATGGATAATGTACAGCTTAAGAAAAGGGAACAAAAACAAAACTCTAGCTGGGAAGGACTTATTGCTCCTATATGCATGTGTAATATAGAGTAACTATTATAAATAGTATTTCAACTACCTTTATTTATATTTCAA</gDNA_template>
            <first_frame> K  K  F  G  R   : G  L  R  V  W  *  Q  D  L  T  N  Y  *  N  M  L  E  V  V  P  K  W  S  Q  F  A  H   : R  P  R  E  L  A  G  A  V  D  L  I  N  H  Y  K  L  L  P  H  H  E  Y  F  C  K  K  P  L  P  L  S  I  S  D  T  R  Y  L  H  N  V  V  G  D  R  E  I  R  K  G  E  G  M  Q  L  D  Q  L  I  H  D  T  S  F  L  K  E  T  N  S  R  I  Q  P  F  E  L  D  A  L  N  E  A  F  Q  L  R  E  A  A  P  I  V  L  P  P  :  S  E  K  G  I  P  T  V  A  G  K  S  K  S  E  S  K  D  K  E  K  K  H  K  K  H  K  D  K  D  K  E  K  D  K  E  H  K  K  H  K  H  R  H  K  D  R  S  K  D  K  D  K  E  K  K  K  D  K  T  G  R  H  D  S  G  A  D  L  S  K  K  H  H  E  K  :  R  K  K  H  E  G  K  E  D  L  N  D  V  N  K  H  K  R  N  K  :  H  T  S  *  K  I  D  E  I  G  A  V  K  V  T  C  *  N  V  T  C  A  A  I  I  Y  C  S  H  V  L  L  *  F  T  V  L  M  C  C  S  *  E  F  G  G  I  L  F  L  L  *  N  I  *   : E  *  L  L  D  K  L  K  N  G  K  R  V  N  A  A  V  E  T  R  F  *  *  N  V  H  S  A  E  K  Q  P  H  C  I  I  L  Y  K  S  L  F  D  I  V  Y  F  H  K  H  F  L  F  W  *  T  K  V  F  I  Y  Q  M  D  N  V  Q  L  K  K  R  E  Q  K  Q  N  S  S  W  E  G  L  I  A  P  I  C  M  C  N  I  E  *  L  L  *  I  V  F  Q  L  P  L  F  I  F  Q </first_frame>
            <second_frame>  R  S  L  E  E  :  G  Y  E  F  G  N  K  I  S  Q  I  T  K  I  C  L  K  S  C  Q  S  G  H  S  L  H  T  :  G  Q  E  S  L  Q  V  R  W  I  L  L  I  T  T  S  C  C  L  I  T  S  T  S  A  R  S  L  F  H  C  Q  F  Q  I  H  A  T  F  T  M  L  W  E  T  E  R  L  G  K  G  K  G  C  S  W  I  S  L  Y  M  I  R  L  F  *  K  R  Q  I  H  A  S  N  H  L  S  *  M  L  L  M  K  L  F  N  Y  V  K  Q  L  Q  L  F  C  L  R :   L  K  K  G  S  P  L  *  L  E  S  L  K  V  S  R  K  T  R  R  R  S  I  R  S  T  R  I  K  T  R  R  R  T  K  S  I  R  S  T  N  T  V  I  K  I  E  V  K  T  R  I  K  R  K  R  K  I  K  L  A  V  M  I  L  V  L  T  F  Q  R  N  I  M  K  R :   E  R  S  M  R  A  R  R  I  L  M  M  L  T  N  T  R  E  T  S :   T  R  A  K  R  L  M  K  L  G  Q  *  R  L  R  A  E  M  S  H  V  L  L  *  F  T  V  L  M  C  C  Y  N  L  L  F  S  C  A  A  V  K  N  L  E  E  S  F  S  Y  C  K  I  S  K  :  N  S  F  W  T  N  *  R  M  A  R  G  *  M  Q  L  L  K  L  D  F  S  E  M  Y  I  V  L  K  N  N  L  I  V  L  Y  Y  I  R  A  C  L  T  L  F  I  F  I  S  T  F  F  F  G  K  L  K  F  L  F  T  K  W  I  M  Y  S  L  R  K  G  N  K  N  K  T  L  A  G  K  D  L  L  L  L  Y  A  C  V  I  *  S  N  Y  Y  K  *  Y  F  N  Y  L  Y  L  Y  F   </second_frame>
            <third_frame>   E  V  W  K  R :   V  T  S  L  V  T  R  S  H  K  L  L  K  Y  A  *  S  R  A  K  V  V  T  V  C  T  Q :   A  K  R  A  C  R  C  G  G  S  Y  *  S  L  Q  V  V  A  S  S  R  V  L  L  Q  E  A  S  S  I  V  N  F  R  Y  T  L  P  S  Q  C  C  G  R  Q  R  D  *  E  R  G  R  D  A  V  G  S  A  Y  T  *  Y  V  F  F  K  R  D  K  F  T  H  P  T  I  *  V  R  C  S  *  *  S  F  S  T  T  *  S  S  S  N  C  S  A  S   : V  *  K  R  D  P  H  C  S  W  K  V  *  K  *  V  E  R  Q  G  E  E  A  *  E  A  Q  G  *  R  Q  G  E  G  Q  R  A  *  E  A  Q  T  P  S  *  R  S  K  *  R  Q  G  *  R  E  K  E  R  *  N  W  P  S  *  F  W  C  *  P  F  K  E  T  S  *  K   : E  K  E  A  *  G  Q  G  G  S  *  *  C  *  Q  T  Q  E  K  Q   : A  H  E  L  K  D  *  *  N  W  G  S  K  G  Y  V  L  K  C  H  M  C  C  Y  N  L  L  F  S  C  A  A  I  I  Y  C  S  H  V  L  Q  L  R  I  W  R  N  P  F  L  I  V  K  Y  L  R :   I  A  S  G  Q  T  K  E  W  Q  E  G  E  C  S  C  *  N  *  I  L  V  K  C  T  *  C  *  K  T  T  S  L  Y  Y  T  I  *  E  L  V  *  H  C  L  F  S  *  A  L  S  F  L  V  N  *  S  F  Y  L  P  N  G  *  C  T  A  *  E  K  G  T  K  T  K  L  *  L  G  R  T  Y  C  S  Y  M  H  V  *  Y  R  V  T  I  I  N  S  I  S  T  T  F  I  Y  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27355" stop="27313"/>
                    <exon start="27083" stop="26794"/>
                    <exon start="26610" stop="26383"/>
                    <exon start="24872" stop="24813"/>
                    <exon start="24674" stop="24663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMLEVVPKWSQFAHRPRELAGAVDLINHYKLLPHHEYFCKKPLPLSISDTRYLHNVVGDREIRKGEGMQLDQLIHDTSFLKETNSRIQPFELDALNEAFQLREAAPIVLPPSEKGIPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKEKKKDKTGRHDSGADLSKKHHEKRKKHEGKEDLNDVNKHKRNKHTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23970" stop="23737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQLLKLDFSEMYIVLKNNLIVLYYIRACLTLFIFISTFFFGKLKFLFTKWIMYSLRKGNKNKTLAGKDLLLLYACVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24651" stop="24509"/>
                    <exon start="24009" stop="23958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWGSKGYVLKCHMCCYNLLFSCAAIIYCSHVLQLRIWRNPFLIVKYLRIASGQTKEWQEGECSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35715" PGL_stop="32159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35629" e_stop="35563"/>
            <exon e_start="34709" e_stop="34640"/>
            <exon e_start="34547" e_stop="34456"/>
            <exon e_start="34220" e_stop="34094"/>
            <exon e_start="34003" e_stop="33924"/>
            <exon e_start="33831" e_stop="33715"/>
            <exon e_start="33254" e_stop="33120"/>
            <exon e_start="32968" e_stop="32799"/>
            <exon e_start="32497" e_stop="32159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35629" e_stop="35563" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34709" e_stop="34640" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34547" e_stop="34456" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.341">
            <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34220" e_stop="34094" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34003" e_stop="33924" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.836" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33831" e_stop="33715" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33254" e_stop="33120" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.912" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32968" e_stop="32799" e_length="170"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301"/>
          </intron>
          <exon e_serial="9" e_score="0.994">
            <gDNA_exon_boundary e_start="32497" e_stop="32159" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35629" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35622" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35622" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35622" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35621" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35620" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35619" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35615" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34663" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34649" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34544" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34533" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34516" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34513" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34499" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34211" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34133" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34123" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589024" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34122" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34121" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423704" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33989" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33971" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603466" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33810" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578157" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33756" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33755" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33737" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368438" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33735" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33733" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33249" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620876" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33183" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200174" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33183" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306999" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33181" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33179" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33134" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32967" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32966" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32966" stop="32799"/>
              <exon start="32497" stop="32240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32937" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32921" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32892" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32881" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242156" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32874" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32799"/>
              <exon start="32497" stop="32203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32870" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32867" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32854" stop="32799"/>
              <exon start="32497" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32848" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32827" stop="32799"/>
              <exon start="32497" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32799"/>
              <exon start="32497" stop="32206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32490" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226997" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32444" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32391" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32386" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCTTCTTTAACTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG : GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG : AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT : ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG : CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT : GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG : GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT : ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG : GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</gDNA_template>
            <first_frame> A  S  S  L  T  H  S  P  Q  P  Q  A  P  A  E  A  *  S  T  N  S  N   : G  L  H  Q  S  P  E  D  K  G  L  L  Q  A  F  P  G  *  I  Q  E  K  E  R :   G  K  D  *  L  Q  S  Q  E  S  F  D  Q  S  G  Q  K  Q  V  Q  H  S  K  I  P  L  R  C  S  I   : Y  *  Q  G  H  N  Y  T  N  C  V  C  *  Y  C  W  *  H  D  S  C  F  C  L  C  K  R  V  A  S  F  W  T  E  S  W  I  D  K  L  C  C  C :   I  L  Y  R  T  S  L  G  K  A  S  S  Q  E  A  *  N  G  *  R  I  S  R  K  S  *   : C  Q  W  R  G  L  L  C  *  T  C  *  K  Q  E  A  F  P  C  S  L  G  C  R  P  L  K  N  Y  Y  R  E  P  C  F  W  C  S  Q   : G  C  I  G  W  W  D  *  H  P  S  *  R  E  E  V  C  W  I  Q  Q  G  L  *  A  T  R  C  R  S  S  P  Q  V  Y  L  W  W  P  R  C  C  L  Y  E   : Y  F  D  G  R  *  T  *  E  I  S  D  T  L  Q  L  I  H  Q  G  G  S  *  G  R  Q  S  *  G  D  V  Q  K  G  S  C  C  H  T  R  R  P  K  S  K  E  V  W  K  A  T  S  Q  D  T  Q  E  :  V  Q  P  *  E  A  D  L  *  R  E  E  S  *  V  D  R  E  T  Q  C  F  E  R  S  W  W  K  *  *  R  *  G  R  R  R  L  V  N  L  *  K  N  F  E  S  L  L  P  *  G  F  L  L  I  L  F  F  F  C  Y  *  V  E  T  S  V  L  H  A  *  *  N  E  T  C  Q  F  *  Q  M  Y  G  I  I  F  L  L  Q  A  S  I  P  L  S  F  N  L  Y  I  C  L  S  F  H  L  K  D  N  *  L  F  I </first_frame>
            <second_frame>  L  L  L  *  L  I  P  H  S  P  K  R  R  R  R  L  N  R  R  T  A  M  :  A  F  I  K  V  Q  K  T  R  A  Y  F  K  R  F  Q  V  K  F  K  R  R  R   : E  G  K  T  D  Y  R  A  R  N  R  L  I  N  Q  D  K  N  K  Y  N  T  P  K  Y  R  F  V  V  R  F  :  T  N  K  D  I  I  T  Q  I  V  S  A  S  I  A  G  D  M  I  L  A  S  A  Y  A  S  E  L  P  H  F  G  L  K  V  G  L  T  N  Y  A  A   : A  Y  C  T  G  L  L  L  A  R  R  V  L  K  K  L  E  M  D  E  E  Y  Q  G  N  L  D  :  V  N  G  E  D  Y  S  V  E  P  A  E  S  R  R  P  F  R  A  L  L  D  V  G  L  L  R  T  T  T  G  N  R  V  F  G  A  L  K  :  G  A  L  D  G  G  I  D  I  P  H  S  E  K  R  F  A  G  Y  S  K  D  S  K  Q  L  D  A  E  V  H  R  K  Y  I  Y  G  G  H  V  A  A  Y  M  N  :  T  L  M  E  D  E  P  E  K  Y  Q  T  H  F  S  L  Y  I  K  A  G  L  E  A  D  N  L  E  E  M  Y  K  K  V  H  A  A  I  R  A  D  P  S  P  K  K  S  G  K  Q  P  P  K  T  H  K  R :   Y  N  L  K  K  L  T  Y  E  E  R  K  A  K  L  I  E  R  L  N  A  L  N  A  A  G  G  N  D  D  D  E  E  D  D  D  *  *  I  C  R  R  T  L  N  P  C  C  L  K  V  F  Y  *  Y  C  F  S  F  A  T  R  *  K  P  Q  F  C  M  L  S  R  M  R  L  V  N  F  D  K  C  M  G  L  Y  F  C  F  R  H  L  F  H  *  V  L  T  Y  I  F  V  Y  H  F  I  *  K  I  I  N  Y  S   </second_frame>
            <third_frame>   F  F  F  N  S  F  P  T  A  P  S  A  G  G  G  L  I  D  E  Q  Q  W :   P  S  S  K  S  R  R  Q  G  L  T  S  S  V  S  R  L  N  S  R  E  G  E  :  R  E  R  L  T  T  E  P  G  I  V  *  S  I  R  T  K  T  S  T  T  L  Q  N  T  A  S  L  F  D  L :   L  T  R  T  *  L  H  K  L  C  L  L  V  L  L  V  T  *  F  L  L  L  L  M  Q  A  S  C  L  I  L  D  *  K  L  D  *  Q  T  M  L  L  :  H  T  V  P  D  F  S  W  Q  G  E  F  S  R  S  L  K  W  M  K  N  I  K  E  I  L  M :   S  M  E  R  T  T  L  L  N  L  L  K  A  G  G  L  S  V  L  S  W  M  S  A  S  *  E  L  L  Q  G  T  V  F  L  V  L  S  R :   V  H  W  M  V  G  L  T  S  L  I  A  R  R  G  L  L  D  T  A  R  T  L  S  N  S  M  Q  K  F  T  A  S  I  S  M  V  A  T  L  L  L  I  *  I :   L  *  W  K  M  N  L  R  N  I  R  H  T  S  A  Y  T  S  R  R  V  L  R  Q  T  I  L  R  R  C  T  K  R  F  M  L  P  Y  A  Q  T  Q  V  Q  R  S  L  E  S  N  L  P  R  H  T  R   : G  T  T  L  R  S  *  L  M  K  R  G  K  L  S  *  S  R  D  S  M  L  *  T  Q  L  V  E  M  M  T  M  R  K  T  T  I  S  E  F  V  E  E  L  *  I  L  V  A  L  R  F  S  I  N  I  V  F  L  L  L  L  G  R  N  L  S  F  A  C  L  V  E  *  D  L  S  I  L  T  N  V  W  D  Y  I  F  A  S  G  I  Y  S  I  E  F  *  L  I  Y  L  S  I  I  S  F  K  R  *  L  I  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35616" stop="35563"/>
                    <exon start="34709" stop="34640"/>
                    <exon start="34547" stop="34456"/>
                    <exon start="34220" stop="34094"/>
                    <exon start="34003" stop="33924"/>
                    <exon start="33831" stop="33715"/>
                    <exon start="33254" stop="33120"/>
                    <exon start="32968" stop="32799"/>
                    <exon start="32497" stop="32386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIPHSPKRRRRLNRRTAMAFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNKYNTPKYRFVVRFTNKDIITQIVSASIAGDMILASAYASELPHFGLKVGLTNYAAAYCTGLLLARRVLKKLEMDEEYQGNLDVNGEDYSVEPAESRRPFRALLDVGLLRTTTGNRVFGALKGALDGGIDIPHSEKRFAGYSKDSKQLDAEVHRKYIYGGHVAAYMNTLMEDEPEKYQTHFSLYIKAGLEADNLEEMYKKVHAAIRADPSPKKSGKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDDEEDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35715" e_stop="35707"/>
            <exon e_start="35602" e_stop="35563"/>
            <exon e_start="34709" e_stop="34640"/>
            <exon e_start="34547" e_stop="34456"/>
            <exon e_start="34220" e_stop="34094"/>
            <exon e_start="34003" e_stop="33924"/>
            <exon e_start="33831" e_stop="33715"/>
            <exon e_start="33254" e_stop="33120"/>
            <exon e_start="32968" e_stop="32799"/>
            <exon e_start="32497" e_stop="32159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.437" e_score="0.667"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="35715" e_stop="35707" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.437">
            <gDNA_intron_boundary i_start="35706" i_stop="35603" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35602" e_stop="35563" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34709" e_stop="34640" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34547" e_stop="34456" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.341">
            <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34220" e_stop="34094" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34003" e_stop="33924" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.836" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33831" e_stop="33715" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33254" e_stop="33120" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.912" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32968" e_stop="32799" e_length="170"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="32497" e_stop="32159" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35715" stop="35707"/>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35601" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35601" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35601" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35601" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35600" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35600" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35600" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35600" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35600" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35599" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35599" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTACAG : CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG : GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG : AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT : ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG : CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT : GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG : GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT : ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG : GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</gDNA_template>
            <first_frame> A  L  Q  :  P  Q  A  P  A  E  A  *  S  T  N  S  N   : G  L  H  Q  S  P  E  D  K  G  L  L  Q  A  F  P  G  *  I  Q  E  K  E  R :   G  K  D  *  L  Q  S  Q  E  S  F  D  Q  S  G  Q  K  Q  V  Q  H  S  K  I  P  L  R  C  S  I   : Y  *  Q  G  H  N  Y  T  N  C  V  C  *  Y  C  W  *  H  D  S  C  F  C  L  C  K  R  V  A  S  F  W  T  E  S  W  I  D  K  L  C  C  C :   I  L  Y  R  T  S  L  G  K  A  S  S  Q  E  A  *  N  G  *  R  I  S  R  K  S  *   : C  Q  W  R  G  L  L  C  *  T  C  *  K  Q  E  A  F  P  C  S  L  G  C  R  P  L  K  N  Y  Y  R  E  P  C  F  W  C  S  Q   : G  C  I  G  W  W  D  *  H  P  S  *  R  E  E  V  C  W  I  Q  Q  G  L  *  A  T  R  C  R  S  S  P  Q  V  Y  L  W  W  P  R  C  C  L  Y  E   : Y  F  D  G  R  *  T  *  E  I  S  D  T  L  Q  L  I  H  Q  G  G  S  *  G  R  Q  S  *  G  D  V  Q  K  G  S  C  C  H  T  R  R  P  K  S  K  E  V  W  K  A  T  S  Q  D  T  Q  E  :  V  Q  P  *  E  A  D  L  *  R  E  E  S  *  V  D  R  E  T  Q  C  F  E  R  S  W  W  K  *  *  R  *  G  R  R  R  L  V  N  L  *  K  N  F  E  S  L  L  P  *  G  F  L  L  I  L  F  F  F  C  Y  *  V  E  T  S  V  L  H  A  *  *  N  E  T  C  Q  F  *  Q  M  Y  G  I  I  F  L  L  Q  A  S  I  P  L  S  F  N  L  Y  I  C  L  S  F  H  L  K  D  N  *  L  F  I </first_frame>
            <second_frame>  P  Y  S :   P  K  R  R  R  R  L  N  R  R  T  A  M  :  A  F  I  K  V  Q  K  T  R  A  Y  F  K  R  F  Q  V  K  F  K  R  R  R   : E  G  K  T  D  Y  R  A  R  N  R  L  I  N  Q  D  K  N  K  Y  N  T  P  K  Y  R  F  V  V  R  F  :  T  N  K  D  I  I  T  Q  I  V  S  A  S  I  A  G  D  M  I  L  A  S  A  Y  A  S  E  L  P  H  F  G  L  K  V  G  L  T  N  Y  A  A   : A  Y  C  T  G  L  L  L  A  R  R  V  L  K  K  L  E  M  D  E  E  Y  Q  G  N  L  D  :  V  N  G  E  D  Y  S  V  E  P  A  E  S  R  R  P  F  R  A  L  L  D  V  G  L  L  R  T  T  T  G  N  R  V  F  G  A  L  K  :  G  A  L  D  G  G  I  D  I  P  H  S  E  K  R  F  A  G  Y  S  K  D  S  K  Q  L  D  A  E  V  H  R  K  Y  I  Y  G  G  H  V  A  A  Y  M  N  :  T  L  M  E  D  E  P  E  K  Y  Q  T  H  F  S  L  Y  I  K  A  G  L  E  A  D  N  L  E  E  M  Y  K  K  V  H  A  A  I  R  A  D  P  S  P  K  K  S  G  K  Q  P  P  K  T  H  K  R :   Y  N  L  K  K  L  T  Y  E  E  R  K  A  K  L  I  E  R  L  N  A  L  N  A  A  G  G  N  D  D  D  E  E  D  D  D  *  *  I  C  R  R  T  L  N  P  C  C  L  K  V  F  Y  *  Y  C  F  S  F  A  T  R  *  K  P  Q  F  C  M  L  S  R  M  R  L  V  N  F  D  K  C  M  G  L  Y  F  C  F  R  H  L  F  H  *  V  L  T  Y  I  F  V  Y  H  F  I  *  K  I  I  N  Y  S   </second_frame>
            <third_frame>   L  T   : A  P  S  A  G  G  G  L  I  D  E  Q  Q  W :   P  S  S  K  S  R  R  Q  G  L  T  S  S  V  S  R  L  N  S  R  E  G  E  :  R  E  R  L  T  T  E  P  G  I  V  *  S  I  R  T  K  T  S  T  T  L  Q  N  T  A  S  L  F  D  L :   L  T  R  T  *  L  H  K  L  C  L  L  V  L  L  V  T  *  F  L  L  L  L  M  Q  A  S  C  L  I  L  D  *  K  L  D  *  Q  T  M  L  L  :  H  T  V  P  D  F  S  W  Q  G  E  F  S  R  S  L  K  W  M  K  N  I  K  E  I  L  M :   S  M  E  R  T  T  L  L  N  L  L  K  A  G  G  L  S  V  L  S  W  M  S  A  S  *  E  L  L  Q  G  T  V  F  L  V  L  S  R :   V  H  W  M  V  G  L  T  S  L  I  A  R  R  G  L  L  D  T  A  R  T  L  S  N  S  M  Q  K  F  T  A  S  I  S  M  V  A  T  L  L  L  I  *  I :   L  *  W  K  M  N  L  R  N  I  R  H  T  S  A  Y  T  S  R  R  V  L  R  Q  T  I  L  R  R  C  T  K  R  F  M  L  P  Y  A  Q  T  Q  V  Q  R  S  L  E  S  N  L  P  R  H  T  R   : G  T  T  L  R  S  *  L  M  K  R  G  K  L  S  *  S  R  D  S  M  L  *  T  Q  L  V  E  M  M  T  M  R  K  T  T  I  S  E  F  V  E  E  L  *  I  L  V  A  L  R  F  S  I  N  I  V  F  L  L  L  L  G  R  N  L  S  F  A  C  L  V  E  *  D  L  S  I  L  T  N  V  W  D  Y  I  F  A  S  G  I  Y  S  I  E  F  *  L  I  Y  L  S  I  I  S  F  K  R  *  L  I  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35714" stop="35707"/>
                    <exon start="35602" stop="35563"/>
                    <exon start="34709" stop="34640"/>
                    <exon start="34547" stop="34456"/>
                    <exon start="34220" stop="34094"/>
                    <exon start="34003" stop="33924"/>
                    <exon start="33831" stop="33715"/>
                    <exon start="33254" stop="33120"/>
                    <exon start="32968" stop="32799"/>
                    <exon start="32497" stop="32386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYSPKRRRRLNRRTAMAFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNKYNTPKYRFVVRFTNKDIITQIVSASIAGDMILASAYASELPHFGLKVGLTNYAAAYCTGLLLARRVLKKLEMDEEYQGNLDVNGEDYSVEPAESRRPFRALLDVGLLRTTTGNRVFGALKGALDGGIDIPHSEKRFAGYSKDSKQLDAEVHRKYIYGGHVAAYMNTLMEDEPEKYQTHFSLYIKAGLEADNLEEMYKKVHAAIRADPSPKKSGKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDDEEDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34711" e_stop="34640"/>
            <exon e_start="34547" e_stop="34456"/>
            <exon e_start="34220" e_stop="34094"/>
            <exon e_start="34003" e_stop="33924"/>
            <exon e_start="33831" e_stop="33715"/>
            <exon e_start="33254" e_stop="33120"/>
            <exon e_start="32968" e_stop="32799"/>
            <exon e_start="32497" e_stop="32159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="0.992"/>
          <exon-intron don_prob="0.836" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34711" e_stop="34640" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34547" e_stop="34456" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.341">
            <gDNA_intron_boundary i_start="34455" i_stop="34221" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="34220" e_stop="34094" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34003" e_stop="33924" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.836" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33831" e_stop="33715" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33254" e_stop="33120" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.912" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32968" e_stop="32799" e_length="170"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="32497" e_stop="32159" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34711" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34456"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32490" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226997" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32444" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32391" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32386" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG : AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTT : ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG : CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT : GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG : GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT : ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG : GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</gDNA_template>
            <first_frame> R  P  S  S  K  S  R  R  Q  G  L  T  S  S  V  S  R  L  N  S  R  E  G  E  :  R  E  R  L  T  T  E  P  G  I  V  *  S  I  R  T  K  T  S  T  T  L  Q  N  T  A  S  L  F  D  L :   L  T  R  T  *  L  H  K  L  C  L  L  V  L  L  V  T  *  F  L  L  L  L  M  Q  A  S  C  L  I  L  D  *  K  L  D  *  Q  T  M  L  L  :  H  T  V  P  D  F  S  W  Q  G  E  F  S  R  S  L  K  W  M  K  N  I  K  E  I  L  M :   S  M  E  R  T  T  L  L  N  L  L  K  A  G  G  L  S  V  L  S  W  M  S  A  S  *  E  L  L  Q  G  T  V  F  L  V  L  S  R :   V  H  W  M  V  G  L  T  S  L  I  A  R  R  G  L  L  D  T  A  R  T  L  S  N  S  M  Q  K  F  T  A  S  I  S  M  V  A  T  L  L  L  I  *  I :   L  *  W  K  M  N  L  R  N  I  R  H  T  S  A  Y  T  S  R  R  V  L  R  Q  T  I  L  R  R  C  T  K  R  F  M  L  P  Y  A  Q  T  Q  V  Q  R  S  L  E  S  N  L  P  R  H  T  R   : G  T  T  L  R  S  *  L  M  K  R  G  K  L  S  *  S  R  D  S  M  L  *  T  Q  L  V  E  M  M  T  M  R  K  T  T  I  S  E  F  V  E  E  L  *  I  L  V  A  L  R  F  S  I  N  I  V  F  L  L  L  L  G  R  N  L  S  F  A  C  L  V  E  *  D  L  S  I  L  T  N  V  W  D  Y  I  F  A  S  G  I  Y  S  I  E  F  *  L  I  Y  L  S  I  I  S  F  K  R  *  L  I  I  H  </first_frame>
            <second_frame>  G  L  H  Q  S  P  E  D  K  G  L  L  Q  A  F  P  G  *  I  Q  E  K  E  R :   G  K  D  *  L  Q  S  Q  E  S  F  D  Q  S  G  Q  K  Q  V  Q  H  S  K  I  P  L  R  C  S  I   : Y  *  Q  G  H  N  Y  T  N  C  V  C  *  Y  C  W  *  H  D  S  C  F  C  L  C  K  R  V  A  S  F  W  T  E  S  W  I  D  K  L  C  C  C :   I  L  Y  R  T  S  L  G  K  A  S  S  Q  E  A  *  N  G  *  R  I  S  R  K  S  *   : C  Q  W  R  G  L  L  C  *  T  C  *  K  Q  E  A  F  P  C  S  L  G  C  R  P  L  K  N  Y  Y  R  E  P  C  F  W  C  S  Q   : G  C  I  G  W  W  D  *  H  P  S  *  R  E  E  V  C  W  I  Q  Q  G  L  *  A  T  R  C  R  S  S  P  Q  V  Y  L  W  W  P  R  C  C  L  Y  E   : Y  F  D  G  R  *  T  *  E  I  S  D  T  L  Q  L  I  H  Q  G  G  S  *  G  R  Q  S  *  G  D  V  Q  K  G  S  C  C  H  T  R  R  P  K  S  K  E  V  W  K  A  T  S  Q  D  T  Q  E  :  V  Q  P  *  E  A  D  L  *  R  E  E  S  *  V  D  R  E  T  Q  C  F  E  R  S  W  W  K  *  *  R  *  G  R  R  R  L  V  N  L  *  K  N  F  E  S  L  L  P  *  G  F  L  L  I  L  F  F  F  C  Y  *  V  E  T  S  V  L  H  A  *  *  N  E  T  C  Q  F  *  Q  M  Y  G  I  I  F  L  L  Q  A  S  I  P  L  S  F  N  L  Y  I  C  L  S  F  H  L  K  D  N  *  L  F  I </second_frame>
            <third_frame>   A  F  I  K  V  Q  K  T  R  A  Y  F  K  R  F  Q  V  K  F  K  R  R  R   : E  G  K  T  D  Y  R  A  R  N  R  L  I  N  Q  D  K  N  K  Y  N  T  P  K  Y  R  F  V  V  R  F  :  T  N  K  D  I  I  T  Q  I  V  S  A  S  I  A  G  D  M  I  L  A  S  A  Y  A  S  E  L  P  H  F  G  L  K  V  G  L  T  N  Y  A  A   : A  Y  C  T  G  L  L  L  A  R  R  V  L  K  K  L  E  M  D  E  E  Y  Q  G  N  L  D  :  V  N  G  E  D  Y  S  V  E  P  A  E  S  R  R  P  F  R  A  L  L  D  V  G  L  L  R  T  T  T  G  N  R  V  F  G  A  L  K  :  G  A  L  D  G  G  I  D  I  P  H  S  E  K  R  F  A  G  Y  S  K  D  S  K  Q  L  D  A  E  V  H  R  K  Y  I  Y  G  G  H  V  A  A  Y  M  N  :  T  L  M  E  D  E  P  E  K  Y  Q  T  H  F  S  L  Y  I  K  A  G  L  E  A  D  N  L  E  E  M  Y  K  K  V  H  A  A  I  R  A  D  P  S  P  K  K  S  G  K  Q  P  P  K  T  H  K  R :   Y  N  L  K  K  L  T  Y  E  E  R  K  A  K  L  I  E  R  L  N  A  L  N  A  A  G  G  N  D  D  D  E  E  D  D  D  *  *  I  C  R  R  T  L  N  P  C  C  L  K  V  F  Y  *  Y  C  F  S  F  A  T  R  *  K  P  Q  F  C  M  L  S  R  M  R  L  V  N  F  D  K  C  M  G  L  Y  F  C  F  R  H  L  F  H  *  V  L  T  Y  I  F  V  Y  H  F  I  *  K  I  I  N  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34709" stop="34640"/>
                    <exon start="34547" stop="34456"/>
                    <exon start="34220" stop="34094"/>
                    <exon start="34003" stop="33924"/>
                    <exon start="33831" stop="33715"/>
                    <exon start="33254" stop="33120"/>
                    <exon start="32968" stop="32799"/>
                    <exon start="32497" stop="32386"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNKYNTPKYRFVVRFTNKDIITQIVSASIAGDMILASAYASELPHFGLKVGLTNYAAAYCTGLLLARRVLKKLEMDEEYQGNLDVNGEDYSVEPAESRRPFRALLDVGLLRTTTGNRVFGALKGALDGGIDIPHSEKRFAGYSKDSKQLDAEVHRKYIYGGHVAAYMNTLMEDEPEKYQTHFSLYIKAGLEADNLEEMYKKVHAAIRADPSPKKSGKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDDEEDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="35602" e_stop="35563"/>
            <exon e_start="34709" e_stop="34640"/>
            <exon e_start="34547" e_stop="34493"/>
            <exon e_start="34410" e_stop="34353"/>
            <exon e_start="34220" e_stop="34094"/>
            <exon e_start="34003" e_stop="33924"/>
            <exon e_start="33831" e_stop="33715"/>
            <exon e_start="33254" e_stop="33120"/>
            <exon e_start="32968" e_stop="32799"/>
            <exon e_start="32497" e_stop="32159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.603" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.341" e_score="0.397"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="0.984"/>
          <exon-intron don_prob="0.836" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35602" e_stop="35563" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34709" e_stop="34640" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34547" e_stop="34493" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.776" acc_prob="0.603">
            <gDNA_intron_boundary i_start="34492" i_stop="34411" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.397">
            <gDNA_exon_boundary e_start="34410" e_stop="34353" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.341">
            <gDNA_intron_boundary i_start="34352" i_stop="34221" i_length="132"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="34220" e_stop="34094" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="34093" i_stop="34004" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34003" e_stop="33924" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.836" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33923" i_stop="33832" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33831" e_stop="33715" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33714" i_stop="33255" i_length="460"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33254" e_stop="33120" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.912" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33119" i_stop="32969" i_length="151"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32968" e_stop="32799" e_length="170"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="32497" e_stop="32159" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35584" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34493"/>
              <exon start="34410" stop="34353"/>
              <exon start="34220" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34211" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34133" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34123" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589024" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34122" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34121" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423704" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="34094"/>
              <exon start="34003" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33989" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33971" stop="33924"/>
              <exon start="33831" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603466" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33810" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578157" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33756" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33755" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33737" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368438" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33735" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33733" stop="33715"/>
              <exon start="33254" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33249" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620876" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33183" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200174" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33183" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306999" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33181" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33179" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33134" stop="33120"/>
              <exon start="32968" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32967" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32966" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32966" stop="32799"/>
              <exon start="32497" stop="32240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32937" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32921" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32892" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32881" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242156" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32874" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32799"/>
              <exon start="32497" stop="32203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32870" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32867" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32854" stop="32799"/>
              <exon start="32497" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32848" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32827" stop="32799"/>
              <exon start="32497" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32799"/>
              <exon start="32497" stop="32206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32490" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226997" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32444" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32391" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32386" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG : GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG : AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAA : CTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACA : ACTAACAAGGACATAATTACACAAATTGTGTCTGCTAGTATTGCTGGTGACATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTGAAAGTTGGATTGACAAACTATGCTGCTG : CATACTGTACCGGACTTCTCTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGAT : GTCAATGGAGAGGACTACTCTGTTGAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGATGTCGGCCTCTTAAGAACTACTACAGGGAACCGTGTTTTTGGTGCTCTCAAG : GGTGCATTGGATGGTGGGATTGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAAT : ACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG : GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</gDNA_template>
            <first_frame> P  Q  A  P  A  E  A  *  S  T  N  S  N   : G  L  H  Q  S  P  E  D  K  G  L  L  Q  A  F  P  G  *  I  Q  E  K  E  R :   G  K  D  *  L  Q  S  Q  E  S  F  D  Q  S  G  Q  K  Q  :  L  L  D  K  L  L  F  L  S  E  N  H  L  L  F  G  P  W  N   : N  *  Q  G  H  N  Y  T  N  C  V  C  *  Y  C  W  *  H  D  S  C  F  C  L  C  K  R  V  A  S  F  W  T  E  S  W  I  D  K  L  C  C  C :   I  L  Y  R  T  S  L  G  K  A  S  S  Q  E  A  *  N  G  *  R  I  S  R  K  S  *   : C  Q  W  R  G  L  L  C  *  T  C  *  K  Q  E  A  F  P  C  S  L  G  C  R  P  L  K  N  Y  Y  R  E  P  C  F  W  C  S  Q   : G  C  I  G  W  W  D  *  H  P  S  *  R  E  E  V  C  W  I  Q  Q  G  L  *  A  T  R  C  R  S  S  P  Q  V  Y  L  W  W  P  R  C  C  L  Y  E   : Y  F  D  G  R  *  T  *  E  I  S  D  T  L  Q  L  I  H  Q  G  G  S  *  G  R  Q  S  *  G  D  V  Q  K  G  S  C  C  H  T  R  R  P  K  S  K  E  V  W  K  A  T  S  Q  D  T  Q  E  :  V  Q  P  *  E  A  D  L  *  R  E  E  S  *  V  D  R  E  T  Q  C  F  E  R  S  W  W  K  *  *  R  *  G  R  R  R  L  V  N  L  *  K  N  F  E  S  L  L  P  *  G  F  L  L  I  L  F  F  F  C  Y  *  V  E  T  S  V  L  H  A  *  *  N  E  T  C  Q  F  *  Q  M  Y  G  I  I  F  L  L  Q  A  S  I  P  L  S  F  N  L  Y  I  C  L  S  F  H  L  K  D  N  *  L  F  I </first_frame>
            <second_frame>  P  K  R  R  R  R  L  N  R  R  T  A  M  :  A  F  I  K  V  Q  K  T  R  A  Y  F  K  R  F  Q  V  K  F  K  R  R  R   : E  G  K  T  D  Y  R  A  R  N  R  L  I  N  Q  D  K  N  N :   Y  L  I  N  C  Y  F  F  R  R  I  I  Y  C  L  V  H  G  T  :  T  N  K  D  I  I  T  Q  I  V  S  A  S  I  A  G  D  M  I  L  A  S  A  Y  A  S  E  L  P  H  F  G  L  K  V  G  L  T  N  Y  A  A   : A  Y  C  T  G  L  L  L  A  R  R  V  L  K  K  L  E  M  D  E  E  Y  Q  G  N  L  D  :  V  N  G  E  D  Y  S  V  E  P  A  E  S  R  R  P  F  R  A  L  L  D  V  G  L  L  R  T  T  T  G  N  R  V  F  G  A  L  K  :  G  A  L  D  G  G  I  D  I  P  H  S  E  K  R  F  A  G  Y  S  K  D  S  K  Q  L  D  A  E  V  H  R  K  Y  I  Y  G  G  H  V  A  A  Y  M  N  :  T  L  M  E  D  E  P  E  K  Y  Q  T  H  F  S  L  Y  I  K  A  G  L  E  A  D  N  L  E  E  M  Y  K  K  V  H  A  A  I  R  A  D  P  S  P  K  K  S  G  K  Q  P  P  K  T  H  K  R :   Y  N  L  K  K  L  T  Y  E  E  R  K  A  K  L  I  E  R  L  N  A  L  N  A  A  G  G  N  D  D  D  E  E  D  D  D  *  *  I  C  R  R  T  L  N  P  C  C  L  K  V  F  Y  *  Y  C  F  S  F  A  T  R  *  K  P  Q  F  C  M  L  S  R  M  R  L  V  N  F  D  K  C  M  G  L  Y  F  C  F  R  H  L  F  H  *  V  L  T  Y  I  F  V  Y  H  F  I  *  K  I  I  N  Y  S   </second_frame>
            <third_frame>   P  S  A  G  G  G  L  I  D  E  Q  Q  W :   P  S  S  K  S  R  R  Q  G  L  T  S  S  V  S  R  L  N  S  R  E  G  E  :  R  E  R  L  T  T  E  P  G  I  V  *  S  I  R  T  K  T   : T  T  *  *  I  A  I  S  F  G  E  S  S  T  V  W  S  M  E  Q :   L  T  R  T  *  L  H  K  L  C  L  L  V  L  L  V  T  *  F  L  L  L  L  M  Q  A  S  C  L  I  L  D  *  K  L  D  *  Q  T  M  L  L  :  H  T  V  P  D  F  S  W  Q  G  E  F  S  R  S  L  K  W  M  K  N  I  K  E  I  L  M :   S  M  E  R  T  T  L  L  N  L  L  K  A  G  G  L  S  V  L  S  W  M  S  A  S  *  E  L  L  Q  G  T  V  F  L  V  L  S  R :   V  H  W  M  V  G  L  T  S  L  I  A  R  R  G  L  L  D  T  A  R  T  L  S  N  S  M  Q  K  F  T  A  S  I  S  M  V  A  T  L  L  L  I  *  I :   L  *  W  K  M  N  L  R  N  I  R  H  T  S  A  Y  T  S  R  R  V  L  R  Q  T  I  L  R  R  C  T  K  R  F  M  L  P  Y  A  Q  T  Q  V  Q  R  S  L  E  S  N  L  P  R  H  T  R   : G  T  T  L  R  S  *  L  M  K  R  G  K  L  S  *  S  R  D  S  M  L  *  T  Q  L  V  E  M  M  T  M  R  K  T  T  I  S  E  F  V  E  E  L  *  I  L  V  A  L  R  F  S  I  N  I  V  F  L  L  L  L  G  R  N  L  S  F  A  C  L  V  E  *  D  L  S  I  L  T  N  V  W  D  Y  I  F  A  S  G  I  Y  S  I  E  F  *  L  I  Y  L  S  I  I  S  F  K  R  *  L  I  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35601" stop="35563"/>
                    <exon start="34709" stop="34640"/>
                    <exon start="34547" stop="34493"/>
                    <exon start="34410" stop="34353"/>
                    <exon start="34220" stop="34094"/>
                    <exon start="34003" stop="33924"/>
                    <exon start="33831" stop="33715"/>
                    <exon start="33254" stop="33120"/>
                    <exon start="32968" stop="32799"/>
                    <exon start="32497" stop="32386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKRRRRLNRRTAMAFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNNYLINCYFFRRIIYCLVHGTTNKDIITQIVSASIAGDMILASAYASELPHFGLKVGLTNYAAAYCTGLLLARRVLKKLEMDEEYQGNLDVNGEDYSVEPAESRRPFRALLDVGLLRTTTGNRVFGALKGALDGGIDIPHSEKRFAGYSKDSKQLDAEVHRKYIYGGHVAAYMNTLMEDEPEKYQTHFSLYIKAGLEADNLEEMYKKVHAAIRADPSPKKSGKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDDEEDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="33052" e_stop="32799"/>
            <exon e_start="32497" e_stop="32159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="33052" e_stop="32799" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32798" i_stop="32498" i_length="301"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32497" e_stop="32159" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33052" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32983" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32967" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32966" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32966" stop="32799"/>
              <exon start="32497" stop="32240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32937" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32921" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32892" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32881" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242156" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32874" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32799"/>
              <exon start="32497" stop="32203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32870" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32867" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32854" stop="32799"/>
              <exon start="32497" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32848" stop="32799"/>
              <exon start="32497" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32827" stop="32799"/>
              <exon start="32497" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32799"/>
              <exon start="32497" stop="32206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32490" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226997" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32444" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32391" stop="32159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32386" stop="32205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCACAGAAGATTGTTTGATTTTCAGTGTTCATTCTGGCTTCTATTTACTCCTCATCTCTAATATGCTTGATCATTGTTTGCAGACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAGGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAAAAGGTTCATGCTGCCATACGCGCAGACCCAAGTCCAAAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAG : GTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAGAGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGATGAGGAAGACGACGATTAGTGAATTTGTAGAAGAACTTTGAATCCTTGTTGCCTTAAGGTTTTCTATTAATATTGTTTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTCAATTTTGACAAATGTATGGGATTATATTTTTGCTTCAGGCATCTATTCCATTGAGTTTTAACTTATATATTTGTCTATCATTTCATTTAAAAGATAATTAATTATTCATA</gDNA_template>
            <first_frame> G  T  E  D  C  L  I  F  S  V  H  S  G  F  Y  L  L  L  I  S  N  M  L  D  H  C  L  Q  T  L  M  E  D  E  P  E  K  Y  Q  T  H  F  S  L  Y  I  K  A  G  L  E  A  D  N  L  E  E  M  Y  K  K  V  H  A  A  I  R  A  D  P  S  P  K  K  S  G  K  Q  P  P  K  T  H  K  R :   Y  N  L  K  K  L  T  Y  E  E  R  K  A  K  L  I  E  R  L  N  A  L  N  A  A  G  G  N  D  D  D  E  E  D  D  D  *  *  I  C  R  R  T  L  N  P  C  C  L  K  V  F  Y  *  Y  C  F  S  F  A  T  R  *  K  P  Q  F  C  M  L  S  R  M  R  L  V  N  F  D  K  C  M  G  L  Y  F  C  F  R  H  L  F  H  *  V  L  T  Y  I  F  V  Y  H  F  I  *  K  I  I  N  Y  S   </first_frame>
            <second_frame>  A  Q  K  I  V  *  F  S  V  F  I  L  A  S  I  Y  S  S  S  L  I  C  L  I  I  V  C  R  L  *  W  K  M  N  L  R  N  I  R  H  T  S  A  Y  T  S  R  R  V  L  R  Q  T  I  L  R  R  C  T  K  R  F  M  L  P  Y  A  Q  T  Q  V  Q  R  S  L  E  S  N  L  P  R  H  T  R   : G  T  T  L  R  S  *  L  M  K  R  G  K  L  S  *  S  R  D  S  M  L  *  T  Q  L  V  E  M  M  T  M  R  K  T  T  I  S  E  F  V  E  E  L  *  I  L  V  A  L  R  F  S  I  N  I  V  F  L  L  L  L  G  R  N  L  S  F  A  C  L  V  E  *  D  L  S  I  L  T  N  V  W  D  Y  I  F  A  S  G  I  Y  S  I  E  F  *  L  I  Y  L  S  I  I  S  F  K  R  *  L  I  I  H  </second_frame>
            <third_frame>   H  R  R  L  F  D  F  Q  C  S  F  W  L  L  F  T  P  H  L  *  Y  A  *  S  L  F  A  D  F  D  G  R  *  T  *  E  I  S  D  T  L  Q  L  I  H  Q  G  G  S  *  G  R  Q  S  *  G  D  V  Q  K  G  S  C  C  H  T  R  R  P  K  S  K  E  V  W  K  A  T  S  Q  D  T  Q  E  :  V  Q  P  *  E  A  D  L  *  R  E  E  S  *  V  D  R  E  T  Q  C  F  E  R  S  W  W  K  *  *  R  *  G  R  R  R  L  V  N  L  *  K  N  F  E  S  L  L  P  *  G  F  L  L  I  L  F  F  F  C  Y  *  V  E  T  S  V  L  H  A  *  *  N  E  T  C  Q  F  *  Q  M  Y  G  I  I  F  L  L  Q  A  S  I  P  L  S  F  N  L  Y  I  C  L  S  F  H  L  K  D  N  *  L  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33052" stop="32799"/>
                    <exon start="32497" stop="32386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTEDCLIFSVHSGFYLLLISNMLDHCLQTLMEDEPEKYQTHFSLYIKAGLEADNLEEMYKKVHAAIRADPSPKKSGKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDDEEDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="35602" e_stop="35563"/>
            <exon e_start="34709" e_stop="34640"/>
            <exon e_start="34547" e_stop="34307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.925"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="35602" e_stop="35563" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35562" i_stop="34710" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34709" e_stop="34640" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34639" i_stop="34548" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="34547" e_stop="34307" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35563"/>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34640"/>
              <exon start="34547" stop="34307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAGCAATG : GCCTTCATCAAAGTCCAGAAGACAAGGGCTTACTTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAG : AGGGAAAGACTGACTACAGAGCCAGGAATCGTTTGATCAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGCTTCGTTGTTCGATTTGTATCCTTTCTAATGCATTTTCTGCCTTTTTAATTTGCAAAGCAGCTACTTGATAAATTGCTATTTCTTTCGGAGAATCATCTACTGTTTGGTCCATGGAACAATTCCTTATTACTGTGCATTCATTGAATGTCACTTGGAATTCCTTG</gDNA_template>
            <first_frame> P  Q  A  P  A  E  A  *  S  T  N  S  N   : G  L  H  Q  S  P  E  D  K  G  L  L  Q  A  F  P  G  *  I  Q  E  K  E  R :   G  K  D  *  L  Q  S  Q  E  S  F  D  Q  S  G  Q  K  Q  V  Q  H  S  K  I  P  L  R  C  S  I  C  I  L  S  N  A  F  S  A  F  L  I  C  K  A  A  T  *  *  I  A  I  S  F  G  E  S  S  T  V  W  S  M  E  Q  F  L  I  T  V  H  S  L  N  V  T  W  N  S  L </first_frame>
            <second_frame>  P  K  R  R  R  R  L  N  R  R  T  A  M  :  A  F  I  K  V  Q  K  T  R  A  Y  F  K  R  F  Q  V  K  F  K  R  R  R   : E  G  K  T  D  Y  R  A  R  N  R  L  I  N  Q  D  K  N  K  Y  N  T  P  K  Y  R  F  V  V  R  F  V  S  F  L  M  H  F  L  P  F  *  F  A  K  Q  L  L  D  K  L  L  F  L  S  E  N  H  L  L  F  G  P  W  N  N  S  L  L  L  C  I  H  *  M  S  L  G  I  P   </second_frame>
            <third_frame>   P  S  A  G  G  G  L  I  D  E  Q  Q  W :   P  S  S  K  S  R  R  Q  G  L  T  S  S  V  S  R  L  N  S  R  E  G  E  :  R  E  R  L  T  T  E  P  G  I  V  *  S  I  R  T  K  T  S  T  T  L  Q  N  T  A  S  L  F  D  L  Y  P  F  *  C  I  F  C  L  F  N  L  Q  S  S  Y  L  I  N  C  Y  F  F  R  R  I  I  Y  C  L  V  H  G  T  I  P  Y  Y  C  A  F  I  E  C  H  L  E  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35601" stop="35563"/>
                    <exon start="34709" stop="34640"/>
                    <exon start="34547" stop="34423"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKRRRRLNRRTAMAFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNKYNTPKYRFVVRFVSFLMHFLPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38238" PGL_stop="40994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38238" e_stop="38327"/>
            <exon e_start="40392" e_stop="40766"/>
            <exon e_start="40797" e_stop="40994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.901" e_score="0.900"/>
          <exon-intron don_prob="0.000" acc_prob="0.074" e_score="0.939"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="38238" e_stop="38327" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.901">
            <gDNA_intron_boundary i_start="38328" i_stop="40391" i_length="2064"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="40392" e_stop="40766" e_length="375"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.074">
            <gDNA_intron_boundary i_start="40767" i_stop="40796" i_length="30"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="40797" e_stop="40994" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38238" stop="38327"/>
              <exon start="40392" stop="40766"/>
              <exon start="40797" stop="40994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38238" stop="38327"/>
              <exon start="40392" stop="40658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCAAACAAGGTGTTATAAATTGCGATGCTGATATGAGTGATTAGCAATAGTTCCAATTTCTTATCTTCGCCTCTCTCACTGCTCTCAG : TGTTGGTTTGTGTGGCTAACCTCTCAAGTTAATGTCCTCCAATCTTTTTGCTTTTGGTATTGGTACCAAAGACGATAAGTATAGATAAAACTGACCGTTGGGAACGTTGACGTTTTACTCTGGTTGATAAGTAAACTATCTTCCTAGTTCCTACGTCTTAAGGGACTTCATAGTTCTGAAACCAGATTTCTTTGCCATAAGCCAGTGATCTCATAGGTCATGTGTTTGAAGACTTGCTCTTTCTTTTTTCGAGTCTTCTACCTCTTCTAGACTCTAGCATGTCTTTTGATAAAATTATTGGGAAGTCCTAATAAAAAGAAAAGTTTATTGTGAACTATCGAGCTTCACACCCTTGCTGGAGTGTTAACTTGGTAG : AAATGGATAATCCATCAGATGACTTCTCTGGATATATCATGCAGCTTCCTGACGATTGTTTACTCTTTATTTTCCAACACCTTGACTGTGGATCTGACCGTGAATCGTTTGGTTTAACCTGTCGTCGCTGGCTTCAAATTCAAAATCTAAATAGAAGATCTTTACAGTTCCAATGCTCTTTCACTGTGCTTAATTTTT</gDNA_template>
            <first_frame> I  Q  T  R  C  Y  K  L  R  C  *  Y  E  *  L  A  I  V  P  I  S  Y  L  R  L  S  H  C  S  Q  :  C  W  F  V  W  L  T  S  Q  V  N  V  L  Q  S  F  C  F  W  Y  W  Y  Q  R  R  *  V  *  I  K  L  T  V  G  N  V  D  V  L  L  W  L  I  S  K  L  S  S  *  F  L  R  L  K  G  L  H  S  S  E  T  R  F  L  C  H  K  P  V  I  S  *  V  M  C  L  K  T  C  S  F  F  F  R  V  F  Y  L  F  *  T  L  A  C  L  L  I  K  L  L  G  S  P  N  K  K  K  S  L  L  *  T  I  E  L  H  T  L  A  G  V  L  T  W  *  :  K  W  I  I  H  Q  M  T  S  L  D  I  S  C  S  F  L  T  I  V  Y  S  L  F  S  N  T  L  T  V  D  L  T  V  N  R  L  V  *  P  V  V  A  G  F  K  F  K  I  *  I  E  D  L  Y  S  S  N  A  L  S  L  C  L  I  F </first_frame>
            <second_frame>  S  K  Q  G  V  I  N  C  D  A  D  M  S  D  *  Q  *  F  Q  F  L  I  F  A  S  L  T  A  L  S :   V  G  L  C  G  *  P  L  K  L  M  S  S  N  L  F  A  F  G  I  G  T  K  D  D  K  Y  R  *  N  *  P  L  G  T  L  T  F  Y  S  G  *  *  V  N  Y  L  P  S  S  Y  V  L  R  D  F  I  V  L  K  P  D  F  F  A  I  S  Q  *  S  H  R  S  C  V  *  R  L  A  L  S  F  F  E  S  S  T  S  S  R  L  *  H  V  F  *  *  N  Y  W  E  V  L  I  K  R  K  V  Y  C  E  L  S  S  F  T  P  L  L  E  C  *  L  G  R :   N  G  *  S  I  R  *  L  L  W  I  Y  H  A  A  S  *  R  L  F  T  L  Y  F  P  T  P  *  L  W  I  *  P  *  I  V  W  F  N  L  S  S  L  A  S  N  S  K  S  K  *  K  I  F  T  V  P  M  L  F  H  C  A  *  F   </second_frame>
            <third_frame>   P  N  K  V  L  *  I  A  M  L  I  *  V  I  S  N  S  S  N  F  L  S  S  P  L  S  L  L  S   : V  L  V  C  V  A  N  L  S  S  *  C  P  P  I  F  L  L  L  V  L  V  P  K  T  I  S  I  D  K  T  D  R  W  E  R  *  R  F  T  L  V  D  K  *  T  I  F  L  V  P  T  S  *  G  T  S  *  F  *  N  Q  I  S  L  P  *  A  S  D  L  I  G  H  V  F  E  D  L  L  F  L  F  S  S  L  L  P  L  L  D  S  S  M  S  F  D  K  I  I  G  K  S  *  *  K  E  K  F  I  V  N  Y  R  A  S  H  P  C  W  S  V  N  L  V   : E  M  D  N  P  S  D  D  F  S  G  Y  I  M  Q  L  P  D  D  C  L  L  F  I  F  Q  H  L  D  C  G  S  D  R  E  S  F  G  L  T  C  R  R  W  L  Q  I  Q  N  L  N  R  R  S  L  Q  F  Q  C  S  F  T  V  L  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40706" stop="40766"/>
                    <exon start="40797" stop="40993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKFIVNYRASHPCWSVNLVEMDNPSDDFSGYIMQLPDDCLLFIFQHLDCGSDRESFGLTCRRWLQIQNLNRRSLQFQCSFTVLNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42542" PGL_stop="42998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42542" e_stop="42998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="42542" e_stop="42998" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42542" stop="42998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGGTCAAATAAATTGAGATCTTCGGATTTCATGGATTTACACAAATGATGTAACAATGAAACATCTCATCGACAATCAACGGATCATAAAACATCATTTCCAGAACGATGTTTGTTAAGTCTCCAAAACTGACGTGCACATTGATCTATAACAACCTACAAATCCCACACAAACATGGCAGGGGGAAGGGGAGGGGAGATTATTATTCATTTAAATGCAGCAAGTCAATCCAGCAGGGTAGGTAGATTGGTTTTACATGCGAGTACACCACACCAGCATAGCTCTTATCTATACTGTAGCTTTCATACAAACTGCAACTTCTTGTTGATGGCTTCCGATGGTAGGTGACATTTGTAAGTCACTACTCTATATCACTGTGCATTATCACCCCACACATCGTTCCATGCAGCACCTGGAGCAGCCTTAGGCCCCTCAATAAAGTTCTGATTACCATG</gDNA_template>
            <first_frame> T  G  Q  I  N  *  D  L  R  I  S  W  I  Y  T  N  D  V  T  M  K  H  L  I  D  N  Q  R  I  I  K  H  H  F  Q  N  D  V  C  *  V  S  K  T  D  V  H  I  D  L  *  Q  P  T  N  P  T  Q  T  W  Q  G  E  G  E  G  R  L  L  F  I  *  M  Q  Q  V  N  P  A  G  *  V  D  W  F  Y  M  R  V  H  H  T  S  I  A  L  I  Y  T  V  A  F  I  Q  T  A  T  S  C  *  W  L  P  M  V  G  D  I  C  K  S  L  L  Y  I  T  V  H  Y  H  P  T  H  R  S  M  Q  H  L  E  Q  P  *  A  P  Q  *  S  S  D  Y  H  </first_frame>
            <second_frame>  L  V  K  *  I  E  I  F  G  F  H  G  F  T  Q  M  M  *  Q  *  N  I  S  S  T  I  N  G  S  *  N  I  I  S  R  T  M  F  V  K  S  P  K  L  T  C  T  L  I  Y  N  N  L  Q  I  P  H  K  H  G  R  G  K  G  R  G  D  Y  Y  S  F  K  C  S  K  S  I  Q  Q  G  R  *  I  G  F  T  C  E  Y  T  T  P  A  *  L  L  S  I  L  *  L  S  Y  K  L  Q  L  L  V  D  G  F  R  W  *  V  T  F  V  S  H  Y  S  I  S  L  C  I  I  T  P  H  I  V  P  C  S  T  W  S  S  L  R  P  L  N  K  V  L  I  T  M </second_frame>
            <third_frame>   W  S  N  K  L  R  S  S  D  F  M  D  L  H  K  *  C  N  N  E  T  S  H  R  Q  S  T  D  H  K  T  S  F  P  E  R  C  L  L  S  L  Q  N  *  R  A  H  *  S  I  T  T  Y  K  S  H  T  N  M  A  G  G  R  G  G  E  I  I  I  H  L  N  A  A  S  Q  S  S  R  V  G  R  L  V  L  H  A  S  T  P  H  Q  H  S  S  Y  L  Y  C  S  F  H  T  N  C  N  F  L  L  M  A  S  D  G  R  *  H  L  *  V  T  T  L  Y  H  C  A  L  S  P  H  T  S  F  H  A  A  P  G  A  A  L  G  P  S  I  K  F  *  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0185J10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42688" stop="42891"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTYKSHTNMAGGRGGEIIIHLNAASQSSRVGRLVLHASTPHQHSSYLYCSFHTNCNFLLMASDGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42994" PGL_stop="42542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42994" e_stop="42542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="42994" e_stop="42542" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42994" stop="42549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42992" stop="42542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42755" stop="42556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATCAGAACTTTATTGAGGGGCCTAAGGCTGCTCCAGGTGCTGCATGGAACGATGTGTGGGGTGATAATGCACAGTGATATAGAGTAGTGACTTACAAATGTCACCTACCATCGGAAGCCATCAACAAGAAGTTGCAGTTTGTATGAAAGCTACAGTATAGATAAGAGCTATGCTGGTGTGGTGTACTCGCATGTAAAACCAATCTACCTACCCTGCTGGATTGACTTGCTGCATTTAAATGAATAATAATCTCCCCTCCCCTTCCCCCTGCCATGTTTGTGTGGGATTTGTAGGTTGTTATAGATCAATGTGCACGTCAGTTTTGGAGACTTAACAAACATCGTTCTGGAAATGATGTTTTATGATCCGTTGATTGTCGATGAGATGTTTCATTGTTACATCATTTGTGTAAATCCATGAAATCCGAAGATCTCAATTTATTTGACCAGT</gDNA_template>
            <first_frame> V  I  R  T  L  L  R  G  L  R  L  L  Q  V  L  H  G  T  M  C  G  V  I  M  H  S  D  I  E  *  *  L  T  N  V  T  Y  H  R  K  P  S  T  R  S  C  S  L  Y  E  S  Y  S  I  D  K  S  Y  A  G  V  V  Y  S  H  V  K  P  I  Y  L  P  C  W  I  D  L  L  H  L  N  E  *  *  S  P  L  P  F  P  L  P  C  L  C  G  I  C  R  L  L  *  I  N  V  H  V  S  F  G  D  L  T  N  I  V  L  E  M  M  F  Y  D  P  L  I  V  D  E  M  F  H  C  Y  I  I  C  V  N  P  *  N  P  K  I  S  I  Y  L  T  S </first_frame>
            <second_frame>  *  S  E  L  Y  *  G  A  *  G  C  S  R  C  C  M  E  R  C  V  G  *  *  C  T  V  I  *  S  S  D  L  Q  M  S  P  T  I  G  S  H  Q  Q  E  V  A  V  C  M  K  A  T  V  *  I  R  A  M  L  V  W  C  T  R  M  *  N  Q  S  T  Y  P  A  G  L  T  C  C  I  *  M  N  N  N  L  P  S  P  S  P  C  H  V  C  V  G  F  V  G  C  Y  R  S  M  C  T  S  V  L  E  T  *  Q  T  S  F  W  K  *  C  F  M  I  R  *  L  S  M  R  C  F  I  V  T  S  F  V  *  I  H  E  I  R  R  S  Q  F  I  *  P   </second_frame>
            <third_frame>   N  Q  N  F  I  E  G  P  K  A  A  P  G  A  A  W  N  D  V  W  G  D  N  A  Q  *  Y  R  V  V  T  Y  K  C  H  L  P  S  E  A  I  N  K  K  L  Q  F  V  *  K  L  Q  Y  R  *  E  L  C  W  C  G  V  L  A  C  K  T  N  L  P  T  L  L  D  *  L  A  A  F  K  *  I  I  I  S  P  P  L  P  P  A  M  F  V  W  D  L  *  V  V  I  D  Q  C  A  R  Q  F  W  R  L  N  K  H  R  S  G  N  D  V  L  *  S  V  D  C  R  *  D  V  S  L  L  H  H  L  C  K  S  M  K  S  E  D  L  N  L  F  D  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0185J10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 494 chains have been computed
$ 
$ memory statistics:
$ 569824 bytes spliced alignments in total
$ 240 spliced alignments have been stored
$ 2374 bytes was the average size of a spliced alignment
$ 23096 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 2566 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 541 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:41:33
-->
