<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:34:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327628" ref_strand="+" ref_description="SGN-E327628 [cTOC-20-N15]">
      <seq>agtaatataaaagagtactactcaacgcataacgaaaaagtgtaaatttgttaacacgacgatcggatcctgcctgagcaaaaacgaaatcgttttccgttagggtgacaatgtcgaaacaaacgtacaaagtcggattttttttccggcggcagttcaccatggctgccgcggaagctccggcggacattaagagcctatttaaacgttattccgacgacagcggagttatgagcgtccagaatcttcatagtttcttaattgagatccagaaggagaaaaatgttagcttagagaacgcagaagccattatcaataatcacggcggcgactccaagcagaaaggcctccagctcgatggcttcttcaagtttctcttttctgatgttaatcctcctctcgatcctaaacttgggattcaccatgatatgactgcacctctgtctcattactacatatacacaggccataattcatatttaactgggaatcaactgagtagtgattgcagtgatgttcccataatacaagctcttcagagaagtgttagagtaattgaattagatatttggccaaattcagacaaagatgatatagaagttctacatggaaggacactgactgctccagtgacgctaatcnaatgtttgaggtctatncaggagcatgcctttttgtgcatcggagtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7045" stop="3502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6745" g_stop="6330" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6329" i_stop="5966" i_length="364">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5965" g_stop="5769" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="613" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5768" i_stop="3880" i_length="1889">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3879" g_stop="3802" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="692" r_length="79" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E327628" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6745" e_stop="6330"/>
          <exon e_start="5965" e_stop="5769"/>
          <exon e_start="3879" e_stop="3802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATATAAAAGAGTACTACTCAACGCATAACGAAAAAGTGTAAATTTGTTAACACGACGATCGGATCCTGCCTGAGCAAAAACGAAATCGTTTTCCGTTAGGGTGACAATGTCGAAACAAACGTACAAAGTCGGATTTTTTTTCCGGCGGCAGTTCACCATGGCTGCCGCGGAAGCTCCGGCGGACATTAAGAGCCTATTTAAACGTTATTCCGACGACAGCGGAGTTATGAGCGTCCAGAATCTTCATAGTTTCTTAATTGAGATCCAGAAGGAGAAAAATGTTAGCTTAGAGAACGCAGAAGCCATTATCAATAATCACGGCGGCGACTCCAAGCAGAAAGGCCTCCAGCTCGATGGCTTCTTCAAGTTTCTCTTTTCTGATGTTAATCCTCCTCTCGATCCTAAACTTGGGGTACTAATTTTAATTTCATCAACAGTGACTTTCTTTACAAATTGTTTGACTTTGTGATCAACCAAATCCTTCCCACTTACTATATAAAAATGATTTATATTAGGAAAATGTATGATATAATTTGACTTGATACGAAATTTAAAAAAAATTGTAATGGTAAACTGAAGTTATGTCAAACTTATTAAAATGTCATTTAATTTCATGGCGTTAAATATGCTATCTGGAAAGTAGAATTTAAAACGTTGTTAAACAGACTAAAAAGAAAAATATTTTTTAAACAGAGGGAGTATATTACTTTATTTTAGATGTTGAAACACCACTCTATTTGGATAAAACTCATGATGTACTCTTCTTTGGATTCCAGATTCACCATGATATGACTGCACCTCTGTCTCATTACTACATATACACAGGCCATAATTCATATTTAACTGGGAATCAACTGAGTAGTGATTGCAGTGATGTTCCCATAATACAAGCTCTTCAGAGAAGTGTTAGAGTAATTGAATTAGATATTTGGCCAAATTCAGACAAAGATGATATAGAAGTTCTACATGGAAGGTGTGTCATGTTCTAATTTTTTTCTATCACCCTTAGCCTTCTATATTTTTTACTGAGCCAGACTCTAAAATTTTGCAGCACCTTTGCTTTCATTTGCACTTAAAATTTAATCTCAGTAAATAAGCTTATGCATTTGCACATAATGTACATGCATATCTTCACTCATATTATATAGACATGCTATGCATTTCTACATGTATACAAAGCACTAAACCAACAACACTAACTGATTAAGACCAAGAATTAAGACTATAAGCTGACAAGTGAGTGGACAACTTCCACTTACTAAATCCATATTATGAGTGTGCTAAAGCTTTTCAAAGGTTACTCTAGTTGTTTTATACAGTCGTGCTTTAGCTGTCTTGTTGCTTTTGTTAATGAGCTTCTTTTTCACACATCACAACATATCCAGATTGTTATTTACTATGGTACTAAATTTTACCACAAAATAATTAGATGAAGTTTGAGGAAATCATTTCAGGTGGGATGTTTTAAGAATATTTAATTAAAATGGAAGTGTCTCTCTCTCTAAGTATAGTTTAACTTTTAGATGAGGCAGTTCATACATCTAATTAACTGATAGTGCCTAAAAAACCATGTTGTTGGCACTATTTTAGAGCATGCCATGTCTGAGGAAAAAGGGACCTGCAGTTGTTTTATGAAGCCAATCAACCAAACTGAACCTGCTGGGCTTGTGTTGACCAGATAATCAGCAGTCAGTAGTTGATATTACTGTTGAATAGATTAGTTGGAGATGCAATGGCCATGGAGCTACCCAACGAACAGATTATGACAAGGAAAAGCTGATATCATGCTTACATCTGAGTTAAAAGGTGAAAGCAATCTAGTGAGGATCATATTCAATCTGATGTGAGAAAAAATATGTTTATTAATGTCTGCTTGCATGGCCGATATTTGGCATCATCTTGTATCCTTGCCCGTATAAGACAGTTGGGAAGGCGAAAAGGGGCTACTATGTCAACAAGCAGGCAAGAGGAGATCGGGGATGTAGATTGGTGGTGAAGCAAAGTGTTACTAGAACAATTTCATTTTTGTCACATTGCACAATCCAAATGCAGTGATTACAGGATGATCCTGAATGCATTTCCCATCTAAGAAATAGCCTGAAAATGTCTTCATGATTATTACTCCATAAGAGTTCTAATATAAAGCAGTTAGAACAAATGTCAAGGAAAACATTCAAAATTACATGCTGGATCTAAGGTTTCCTAAGAACTAGAAAAATGACAAATTTTTTCCTTTTATGACTTACAAGATAATTAAACTAAAGGTCCTTCTAACAAGCTGGAATAACCTAAGATGTGAATTTATGATTTTAGGACCAACATGAGCTTTCCCTTATTGTAATAGAGATCTGGTGGAATTATGCTGACCTTCTTTTAGGAAAAAGACTTAGCTTTTAGTACATAGCTTTCTGAGTTGGTAGAGGCTAATGCTTGCTGCCTTCATTCAGAGAGAAATGACTCTCTCTATTAAAGGATAAATATCTCTAGTTCTAGAAAACAGCCCAAAGGAAAATTTTATATTGCTAGGTCAGTCATCACTGCCGAATTCAGGAGTGGGTTTATTTTACCACAAGTATTCGAAATTCAAACCTATCACAATCCTTTGAAATTTAATATCAGAAAGTAATAGCTCTTGACTTATCTTAATGCTTCAAATTTCTTTGAAGTATACCTTTCGCCTCAAGGTTGAATTTAAAAACTGCAGAATACTAGCTAAAACATTTCTTTATTTAACACTATATGTTACTTTTAATGAGGTTTTGGGTGTTTTTAAACATGTGAATAATCAGATTGAGTTCCCTTTATAGTGCTTGTACTTTTTCATTCTCATTGCAGTTTTGACGTTAAGTAAATTTCACACAGGACACTGACTGCTCCAGTGACGCTAATCAAATGTTTGAGGTCTATCAAGGAGCATGCC-TTTTGTGCATCGGAGTATCC</genome_strand>
        <mrna_strand>AGTAATATAAAAGAGTACTACTCAACGCATAACGAAAAAGTGTAAATTTGTTAACACGACGATCGGATCCTGCCTGAGCAAAAACGAAATCGTTTTCCGTTAGGGTGACAATGTCGAAACAAACGTACAAAGTCGGATTTTTTTTCCGGCGGCAGTTCACCATGGCTGCCGCGGAAGCTCCGGCGGACATTAAGAGCCTATTTAAACGTTATTCCGACGACAGCGGAGTTATGAGCGTCCAGAATCTTCATAGTTTCTTAATTGAGATCCAGAAGGAGAAAAATGTTAGCTTAGAGAACGCAGAAGCCATTATCAATAATCACGGCGGCGACTCCAAGCAGAAAGGCCTCCAGCTCGATGGCTTCTTCAAGTTTCTCTTTTCTGATGTTAATCCTCCTCTCGATCCTAAACTTGGG............................................................................................................................................................................................................................................................................................................................................................................ATTCACCATGATATGACTGCACCTCTGTCTCATTACTACATATACACAGGCCATAATTCATATTTAACTGGGAATCAACTGAGTAGTGATTGCAGTGATGTTCCCATAATACAAGCTCTTCAGAGAAGTGTTAGAGTAATTGAATTAGATATTTGGCCAAATTCAGACAAAGATGATATAGAAGTTCTACATGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACTGACTGCTCCAGTGACGCTAATCNAATGTTTGAGGTCTATNCAGGAGCATGCCTTTTTGTGCATCGGAGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576910" ref_strand="+" ref_description="SGN-E576910 [31121]">
      <seq>atattcatgttcttcatggaaggaccctgactacaccagtaccacttcttaaatgcttaaaggccattagagaccatgcttttgttaaatcgccttatcctgtcataatcacattggaagaccacctgacaccagatcttcaagctaaagttgcggagatggttatccaaatctttggagaaatgttatattatcctcaatcagaatgcttagaggaatttccttcacctgaagggcttaagaatcgcattattctctctacaaagccacccaaagagtaccttgagtcaaagaatcagagagacacatctccagtgggaaaagattcatttagaggggaccttttgaagaaggagaaatcagaaattggggccgaggatcatgacactgatgaaaggagtgacagcgatcaagatgatgaagacggtgatacctccaatgatcagcaatcatcccaaccaggagcacctaagtacaagagtctgatagcagttcacgctgggaaggcaaaacatggtctgaaacgtgcactaagagaggaaaataataaagtcagtcgacttagtttgagtgaacaagaagttgtaagagctgcagaaaattatggaactgatttggttaggttcacacagaagaacattctaagggtgtaccccaagggaacaagagtgacctcctcaaatttcaagcctatgactggctggatgcatggagctcaatggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10222" stop="8619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10179" g_stop="10158" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10157" i_stop="9897" i_length="261">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9896" g_stop="9761" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="158" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.576" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9674" g_stop="9435" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="398" r_length="240" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9347" g_stop="9118" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="622" r_length="224" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9117" i_stop="9023" i_length="95">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9022" g_stop="8919" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="725" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E576910" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10179" e_stop="10158"/>
          <exon e_start="9896" e_stop="9761"/>
          <exon e_start="9674" e_stop="9435"/>
          <exon e_start="9347" e_stop="9118"/>
          <exon e_start="9022" e_stop="8919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCATGTTCTTCATGGAAGGTACAATTAATATGCTCCACATTCTAGCACTGTTTAACATTATAGCAACTTAAATACAAAGGGAAGAAGTAGCGTCTCTTCAGTCTTCGATTATCAATCTTAAGTAGTATTTCTTATTCAATAAATCTGTGTTATCGAACGTATTGTTCAAAGTAACTAAGCATTTCTTATGCTCTCTGATGTCCAGTGTCTAAAGTTCCTAAAGATTGACTGGTTGATTAATTAACTTTGTTGAATGATTCCAGTTCTAATCATTTGCAGGACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAGGTGAGAATTCATATATTGTTGTGGATAACTGCCAGAAATATTTCATGTTCCTATTTAATCTAGTTTTAACTCCTTTGTATCTCTAGATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGGGTAAAATGACATTAAATGGTCTCTTGATTTTCTTATTGTGAGATGCTGATCTACTTTTATGTGCCCTTTTTCTTATCTGGACACTAGAGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAGGTACTCCACAATTTTGTGCATATAAAATGGAATGATTGAGGAGAATGCTCTAGCTCTTCTTGACTGAGTTTCCTCTTCGTTCTTTCATTTGCTAGGTTCACACAGAAAAATATTCTAAGGGTGTACCCCAAGGGAACAAGAGTGACCTCCTCAAATTTCAAGCCTATGACTGGCTGGATGCATGGAGCTCAGATGGTAG</genome_strand>
        <mrna_strand>ATATTCATGTTCTTCATGGAAG.....................................................................................................................................................................................................................................................................GACCCTGACTACACCAGTACCACTTCTTAAATGCTTAAAGGCCATTAGAGACCATGCTTTTGTTAAATCGCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCGGAG......................................................................................ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCAGAATGCTTAGAGGAATTTCCTTCACCTGAAGGGCTTAAGAATCGCATTATTCTCTCTACAAAGCCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGACACATCTCCAGTGGGAAAAGATTCATTTAGAGGGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGGGCCGAGGATCATGACACTGATGAAAGG.......................................................................................AGTGACAGCGATCAAGATGATGAAGACGGTG--A--T--ACCTCCAATGATCAGCAATCATCCCAACCAGGAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTCTGAAACGTGCACTAAGAGAGGAAAATAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAAAATTATGGAACTGATTTGGTTAG...............................................................................................GTTCACACAGAAGAACATTCTAAGGGTGTACCCCAAGGGAACAAGAGTGACCTCCTCAAATTTCAAGCCTATGACTGGCTGGATGCATGGAGCTCA-ATGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298023" ref_strand="+" ref_description="SGN-E298023 [cLEW-12-G19]">
      <seq>accacgctttttttaaatccccttatcctgtcataatcacattggaagaccacctgacaccagatcttcaagctaaagttgcagagatggttatccaaatctttggagaaatgttatattatcctcaatcggaatgcttagatgaatttccttcacctgaagagcttaagaatcgcattattctttctacaaaaccacccaaagagtaccttgagtcaaagaatcagagagatacatctccagtgggaaaagattcatttagagaggaccttttgaagaaggagaaatcagaaattggtgccgaggatcatgacactgatgaaaggagtgacagtgatcaagatgatgaagacggtgatacctccacctccaacgatcagcaatcatcccaaccagaagcacctaagtacaagagtctgatagcagttcacgctgggaaggcaaaacatggtttgaaacgtgcactaagagaggaaagtaataaagtcagtcgacttagtttgagtgaacaagaagttgtaagagctgcagaatattatggaactgatttggttaggttcacacagaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10146" stop="8807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9846" g_stop="9761" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9674" g_stop="9435" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="326" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9347" g_stop="9118" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="556" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9117" i_stop="9023" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9022" g_stop="9006" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="573" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E298023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9846" e_stop="9761"/>
          <exon e_start="9674" e_stop="9435"/>
          <exon e_start="9347" e_stop="9118"/>
          <exon e_start="9022" e_stop="9006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAGGTGAGAATTCATATATTGTTGTGGATAACTGCCAGAAATATTTCATGTTCCTATTTAATCTAGTTTTAACTCCTTTGTATCTCTAGATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGGGTAAAATGACATTAAATGGTCTCTTGATTTTCTTATTGTGAGATGCTGATCTACTTTTATGTGCCCTTTTTCTTATCTGGACACTAGAGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAGGTACTCCACAATTTTGTGCATATAAAATGGAATGATTGAGGAGAATGCTCTAGCTCTTCTTGACTGAGTTTCCTCTTCGTTCTTTCATTTGCTAGGTTCACACAGAAAAATA</genome_strand>
        <mrna_strand>ACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAG......................................................................................ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGG.......................................................................................AGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAG...............................................................................................GTTCACACAGAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312502" ref_strand="+" ref_description="SGN-E312502 [cLEZ-20-L3]">
      <seq>atttgcaggaccctgactacaccagttccacgtcttaaatgcttaaaggccattagagaccacgctttttttaaatccccttatcctgtcataatcacattggaagaccacctgacaccagatcttcaagctaaagttgcagagatggttatccaaatctttggagaaatgttatattatcctcaatcggaatgcttagatgaatttccttcacctgaagagcttaagaatcgcattattctttctacaaaaccacccaaagagtaccttgagtcaaagaatcagagagatacatctccagtgggaaaagattcatttagagaggaccttttgaagaaggagaaatcagaaattggtgccgaggatcatgacactgatgaaaggagtgacagtgatcaagatgatgaagacggtgatacctccacctccaacgatcagcaatcatcccaaccagaagcacctaagtacaagagtctgatagcagttcacgctgggaaggcaaaacatggtttgaaacgtgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10204" stop="8908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9904" g_stop="9761" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9674" g_stop="9435" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="384" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9347" g_stop="9208" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="524" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E312502" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9904" e_stop="9761"/>
          <exon e_start="9674" e_stop="9435"/>
          <exon e_start="9347" e_stop="9208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGGACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAGGTGAGAATTCATATATTGTTGTGGATAACTGCCAGAAATATTTCATGTTCCTATTTAATCTAGTTTTAACTCCTTTGTATCTCTAGATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGGGTAAAATGACATTAAATGGTCTCTTGATTTTCTTATTGTGAGATGCTGATCTACTTTTATGTGCCCTTTTTCTTATCTGGACACTAGAGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACT</genome_strand>
        <mrna_strand>ATTTGCAGGACCCTGACTACACCAGTTCCACGTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAG......................................................................................ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGG.......................................................................................AGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487536" ref_strand="+" ref_description="SGN-E487536 [cSTE-25-J8]">
      <seq>acagaatgtttgggtgttttaaccgtaaatttaagatcagagagacggagccaccaccggatgtgagggatgcgtttttccggtacaccggtaaaggtatccagatgaatgcggatcaacttctccgatatctggtggaggtacaaggagaagaaggatgcactattaaggatgcggagcaaattatacagcatgttgctagtcggcggcaccatctcatcaggcgtcttaaccattcacttgaactcgatgatttctttttttatctttttcaggatgatctcaatggagcaatcaaatctcaggtacatcatgacatgacttctccattgcaacattatttcatctatacaggtcacaattcctacctaactggaaaccaactcagcagcgattgtagtgaaattcctatagttaaggctctagaaagaggtgtgcgcggaatagaactcgatttatggccaagctcggggaaagataatattcatgttcttcatggaaggaccctgactacaccagtaccacttcttaaatgcttaaaggccattagagaccatgcttttgttaaatcgccttatcctgtcataatcacattggaagaccacctgacaccagatcttcaagctaaagttgcggagatggttatccaaatctttggagaaatgttatattatccctcatcagaatgcttagaggaatttccttcacctgaagggctttagaatcgcattattctctctacaagccacccaaagagtaccttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11039" stop="9246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10739" g_stop="10435" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10434" i_stop="10355" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10354" g_stop="10158" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="502" r_length="197" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10157" i_stop="9897" i_length="261">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9896" g_stop="9761" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="638" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.576" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9674" g_stop="9546" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="766" r_length="128" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E487536" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10739" e_stop="10435"/>
          <exon e_start="10354" e_stop="10158"/>
          <exon e_start="9896" e_stop="9761"/>
          <exon e_start="9674" e_stop="9546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAGGTTCTTCTTCCTCTTTTTTTATTGTTCTATGTCATTCTCAATGGTTAATTTATTTAATTTGTTCGTCATCGTCGTTCCAGGTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAGGTACAATTAATATGCTCCACATTCTAGCACTGTTTAACATTATAGCAACTTAAATACAAAGGGAAGAAGTAGCGTCTCTTCAGTCTTCGATTATCAATCTTAAGTAGTATTTCTTATTCAATAAATCTGTGTTATCGAACGTATTGTTCAAAGTAACTAAGCATTTCTTATGCTCTCTGATGTCCAGTGTCTAAAGTTCCTAAAGATTGACTGGTTGATTAATTAACTTTGTTGAATGATTCCAGTTCTAATCATTTGCAGGACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAGGTGAGAATTCATATATTGTTGTGGATAACTGCCAGAAATATTTCATGTTCCTATTTAATCTAGTTTTAACTCCTTTGTATCTCTAGATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAG</genome_strand>
        <mrna_strand>ACAGAATGTTTGGGTGTTTTAACCGTAAATTTAAGATCAGAGAGACGGAGCCACCACCGGATGTGAGGGATGCGTTTTTCCGGTACACCGGTAAAGGTATCCAGATGAATGCGGATCAACTTCTCCGATATCTGGTGGAGGTACAAGGAGAAGAAGGATGCACTATTAAGGATGCGGAGCAAATTATACAGCATGTTGCTAGTCGGCGGCACCATCTCATCAGGCGTCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAG................................................................................GTACATCATGACATGACTTCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAACCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTGCGCGGAATAGAACTCGATTTATGGCCAAGCTCGGGGAAAGATAATATTCATGTTCTTCATGGAAG.....................................................................................................................................................................................................................................................................GACCCTGACTACACCAGTACCACTTCTTAAATGCTTAAAGGCCATTAGAGACCATGCTTTTGTTAAATCGCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCGGAG......................................................................................ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCCTCATCAGAATGCTTAGAGGAATTTCCTTCACCTGAAGGGCTTTAGAATCGCATTATTCTCTCTAC-AAGCCACCCAAAGAGTACCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339786" ref_strand="+" ref_description="SGN-E339786 [cTOE-16-H22]">
      <seq>accgtaaatttaagatcagggagagggagccaccgccggatgtgaggaatgcgtttttccggtacaccggtaaagctaaccagatgaatgcggatcaactttttcggtatctggtggaggtacaaggagaagaagaatgcactattaaggatgcggagcaaattatacagaatgttgctagccggaggcaccatctcatcagacgccttaaccattcacttgaactcgatgatttctttttttatctttttcaggatgatctcaatggagcaatcaaatctcaggtgcaccatgacatgactgctccattgcaacattatttcatctatacaggtcacaattcctacctaactggaaatcaactcagcagcgattgtagtgaaattcctatagttaaggctctagaaagaggtgtccgcggaatagaacttgatttatggccaaactcagggaaagataatattcatgttcttcatggaaggaccctgactacaccagttccacttcttaaatgcttaaaggccattagagaccacgctttttttaaatccccttatcctgtcataatcacattggaagaccacctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11018" stop="9488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10718" g_stop="10435" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10434" i_stop="10355" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10354" g_stop="10158" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="481" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10157" i_stop="9897" i_length="261">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9896" g_stop="9788" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="590" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E339786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10718" e_stop="10435"/>
          <exon e_start="10354" e_stop="10158"/>
          <exon e_start="9896" e_stop="9788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAGGTTCTTCTTCCTCTTTTTTTATTGTTCTATGTCATTCTCAATGGTTAATTTATTTAATTTGTTCGTCATCGTCGTTCCAGGTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAGGTACAATTAATATGCTCCACATTCTAGCACTGTTTAACATTATAGCAACTTAAATACAAAGGGAAGAAGTAGCGTCTCTTCAGTCTTCGATTATCAATCTTAAGTAGTATTTCTTATTCAATAAATCTGTGTTATCGAACGTATTGTTCAAAGTAACTAAGCATTTCTTATGCTCTCTGATGTCCAGTGTCTAAAGTTCCTAAAGATTGACTGGTTGATTAATTAACTTTGTTGAATGATTCCAGTTCTAATCATTTGCAGGACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACA</genome_strand>
        <mrna_strand>ACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAG................................................................................GTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAG.....................................................................................................................................................................................................................................................................GACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325671" ref_strand="+" ref_description="SGN-E325671 [cTOC-15-C8]">
      <seq>ttattacagaatgtttgggtgtttcaaccgtaaatttaagatcagggagagggagccaccgccggatgtgaggaatgcgtttttccggtacaccggtaaagctaaccagatgaatgcggatcaactttttcggtatctggtggaggtacaaggagaagaagaatgcactattaacgatgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11044" stop="10262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10744" g_stop="10562" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E325671" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>183</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10744" e_stop="10562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGA</genome_strand>
        <mrna_strand>TTATTACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAACGATGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537392" ref_strand="+" ref_description="SGN-E537392 [letfr60]">
      <seq>tggatcagttccgacctagagtgaagacttccggaggaaaagaaaatggcgaacagaaacaaattatctccttcccttgttgtctgggttctagttttattcggaaccctaattttcattctgaaccgattaggtgattcaggagtctcctcagatggtaaagacattaaaatcgaggcaaaaacatcagaggatttggagcgggtgacgcataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcagaaaacttcagagctctttgcacagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20031" stop="23202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20331" g_stop="20453" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20587" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="177" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="253" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="325" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E537392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20331" e_stop="20453"/>
          <exon e_start="20534" e_stop="20587"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAGTTCCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAG</genome_strand>
        <mrna_strand>TGGATCAGTTCCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG................................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687910" ref_strand="+" ref_description="SGN-E687910 [T3_tus_81_J18]">
      <seq>ccgacctagagtgaagacttccggaggaaaagaaaatggcgaacagaaacaaattatctccttcccttgttgtctgggttctagttttattcggaaccctaattttcattctgaaccgattaggtgattcaggagtctcctcagatggtaaagacattaaaatcgaggcaaaaacatcagaggatttggagcgggtgacgcataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcagaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggtgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtatcttgtcaatggcaaatgctggaccagacaccaatggatctcaattctttatcacaactgtaacgactagctggttggacaaacatcatgttgttttcggcaaggtgctgtctgggatggatgttgtccacaaaattgaagctgaaggcagacaaagtggaaccccgaaaagcaaagttagaataacaaatagtggagatctgcctcagtgattcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20041" stop="24992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20341" g_stop="20453" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20587" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="167" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="243" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="291" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="315" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="498" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="574" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24545" g_stop="24692" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="722" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E687910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20341" e_stop="20453"/>
          <exon e_start="20534" e_stop="20587"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTT</genome_strand>
        <mrna_strand>CCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG................................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG.................................................................................................GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328315" ref_strand="+" ref_description="SGN-E328315 [cTOC-21-C9]">
      <seq>cgacctagagtgaagacttccggaggaaaagaaaatggcgaacagaaacaaattatctccttcccttgttgtctgggttctagttttattcggaaccctaattttcattctgaaccgattaggtgattcaggagtctcctcagatggtaaagacattaaaatcgaggcaaaaacatcagaggatttggagcgggtgacgcataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcagaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggtgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtatcttgtcaatggcaaatgctggaccagacaccaatggatctcaattctttatcacaactgtaacgactagctggttggacaaacatcatgttgttttcggcaaggtgctgtctgggatgggatgtgtccacaaaattgaagctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20042" stop="24918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20342" g_stop="20453" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20587" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="166" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="242" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="314" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="497" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="573" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24545" g_stop="24618" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="647" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E328315" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20342" e_stop="20453"/>
          <exon e_start="20534" e_stop="20587"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAG</genome_strand>
        <mrna_strand>CGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG................................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG.................................................................................................GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGGATGTGTCCACAAAATTGAAGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443521" ref_strand="+" ref_description="SGN-E443521 [cSTA-38-B20]">
      <seq>agactttggaggaaaagaaaatggcgaacagaaacaaattatctcctttccttgttgtctgggttctggttttattcggaaccctaattttcattctgaaccgattaggtaatacaggagtctcctcagatggtaaagacattacaatcgagcggaatgacgaggcaaaaacatcagaggatttggagcgggtgacacataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcggaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggcgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtattttgtcaatggcgaatgctggaccagacaccaacggatctcaattctttatcacaactgtaaccactagctggttggacaagcatcatgttgtttttgggaaggtgctgtctgggatggatgttgtccacaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20055" stop="24907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20355" g_stop="20453" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20600" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="164" r_length="66" r_score="0.836"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20601" i_stop="20683" i_length="83">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="240" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="312" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="495" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="571" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24545" g_stop="24607" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="634" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E443521" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20355" e_stop="20453"/>
          <exon e_start="20534" e_stop="20600"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAAT</genome_strand>
        <mrna_strand>AGACTTT-GGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTTCCTTGTTGTCTGGGTTCTGGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTAATACAGGAGTCTCCTCAGATGGTAAAGACATTACAATCGA-GCGGAATGACGAG...................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACACATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCGG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGCGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATTTTGTCAATGGCGAATGCTGGACCAGACACCAACGGATCTCAATTCTTTATCACAACTGTAACCACTAGCTG.................................................................................................GTTGGACAAGCATCATGTTGTTTTTGGGAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443523" ref_strand="+" ref_description="SGN-E443523 [cSTA-38-B24]">
      <seq>agactttggaggaaaagaaaatggcgaacagaaacaaattatctcctttccttgttgtctgggttctggttttattcggaaccctaattttcattctgaaccgattaggtaatacaggagtctcctcagatggtaaagacattacaatcgagcggaatgacgaggcaaaaacatcagaggatttggagcgggtgacacataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcggaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggcgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtattttgtcaatggcgaatgctggaccagacaccaacggatctcaattctttatcacaactgtaaccactagctggttggacaagcatcatgttgtttttgggaaggtgctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20055" stop="24749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20355" g_stop="20453" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20600" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="164" r_length="66" r_score="0.836"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20601" i_stop="20683" i_length="83">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="240" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="312" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="495" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="571" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24545" g_stop="24583" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="610" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E443523" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20355" e_stop="20453"/>
          <exon e_start="20534" e_stop="20600"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTC</genome_strand>
        <mrna_strand>AGACTTT-GGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTTCCTTGTTGTCTGGGTTCTGGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTAATACAGGAGTCTCCTCAGATGGTAAAGACATTACAATCGA-GCGGAATGACGAG...................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACACATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCGG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGCGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATTTTGTCAATGGCGAATGCTGGACCAGACACCAACGGATCTCAATTCTTTATCACAACTGTAACCACTAGCTG.................................................................................................GTTGGACAAGCATCATGTTGTTTTTGGGAAGGTGCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708715" ref_strand="+" ref_description="SGN-E708715 [FA36CC10]">
      <seq>gggttctagttttattcggaaccctaattttcattctgaaccgattaggtgattcaggagtctcctcagatggtaaagacattaaaatcgaggcaaaaacatcagaggatttggagcgggtgacgcataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcagaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggtgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtatcttgtcaatggcaaatgctggaccagacaccaatggatctcaattctttatcacaactgtaacgactagctggttggacaaacatcatgttgttttcggcaaggtgctgtctgggatggatgttgtccacaaaattgaagctgaaggcagacaaagtggaaccccgaaaagcaaagttagaataacaaatagtggagatctgcctcagtgattcaattttccatgtatcagaatacatcaaatgcttgaaagtgcttaacctcacgctaaagccaggttcatacactgtcaagaaatgttcaatgggactttcgctgcttgtaaagttaaaacaaccctcgtgaaacaagatcacaactgctgcgtagaatagacacaaggatcattttatgaaaattgtaataaacctttgcttttatatttattttcgtaaaggattttgaatgaattctctgntgtatgtaccatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20116" stop="25243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20416" g_stop="20453" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20587" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="92" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="168" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="216" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="240" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="423" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="499" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24545" g_stop="24943" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="897" r_length="398" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E708715" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20416" e_stop="20453"/>
          <exon e_start="20534" e_stop="20587"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATCAGAATACATCAAATGCTTGAAAGTGCTTAACCTCACGCTAAAGCCAGGTTCATACACTGTCAAGAAATGTTCAATGGGACTTTCGCTGCTTGTAAAGTTAAAACAACCCTCGTGAAACAAGATCACAACTGCTGCGTAGAATAGACACAAGGATCATTTTATGAAAATTGTAATAAAACCTTTGCTTTTATATTTATTTTCGTAAAGGATTTTGAATGAATTCTCTGTTGTATGTACCATAG</genome_strand>
        <mrna_strand>GGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG................................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG.................................................................................................GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATCAGAATACATCAAATGCTTGAAAGTGCTTAACCTCACGCTAAAGCCAGGTTCATACACTGTCAAGAAATGTTCAATGGGACTTTCGCTGCTTGTAAAGTTAAAACAACCCTCGTGAAACAAGATCACAACTGCTGCGTAGAATAGACACAAGGATCATTTTATGAAAATTGTAAT-AAACCTTTGCTTTTATATTTATTTTCGTAAAGGATTTTGAATGAATTCTCTGNTGTATGTACCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353394" ref_strand="+" ref_description="SGN-E353394 [cTOS-15-J13]">
      <seq>ggaaaactgtcccaaagacagcagaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggtgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtatcttgtcaatggcaaatgctggaccagacaccaatggatctcaattctttatcacaactgtaacgactagctggttggacaaacatcatgttgttttcggcaaggtgctgtctgggatggatgttgtccacaaaattgaagctgaaggcagacaaagtggaaccccgaaaagcaaagttagaaataacaatagtggagatctgcctcagtgattcaattttccatgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22454" stop="25001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22754" g_stop="22777" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="48" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="231" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="307" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24545" g_stop="24701" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="464" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E353394" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22754" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATC</genome_strand>
        <mrna_strand>GGAAAACTGTCCCAAAGACAGCAG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG.................................................................................................GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAAATAACAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357389" ref_strand="+" ref_description="SGN-E357389 [cTOS-23-N7]">
      <seq>acacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaggtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaactttttgggtcatagcgtgtgtgtgtatttcataagcatgtttgtattaaattactgagaacaaattggaaatttcaacaacgtatctttctcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25826" stop="24639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25526" g_stop="24939" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E357389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25526" e_stop="24939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTATG</genome_strand>
        <mrna_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356202" ref_strand="+" ref_description="SGN-E356202 [cTOS-20-F11]">
      <seq>acacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaggtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaactttttgggtcatagcgtgtgtgtgtatttcataagcatgtttgtattaaattactgagaacaaattggaaatttcgacaacgtatctttctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25826" stop="24641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25526" g_stop="24941" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E356202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25526" e_stop="24941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTA</genome_strand>
        <mrna_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCGACAACGTATCTTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357700" ref_strand="+" ref_description="SGN-E357700 [cTOS-24-F17]">
      <seq>aggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaggtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaactttttgggtcatagcgtgtgtgtgtatttcataagcatgtttgtattaaattactgagaacaaattggaaatttcaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25691" stop="24656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25391" g_stop="24955" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E357700" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25391" e_stop="24955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAAC</genome_strand>
        <mrna_strand>AGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352772" ref_strand="+" ref_description="SGN-E352772 [cTOS-11-L22]">
      <seq>tctgtgcgtgtttctctcatgtacgtttatgattgaatcgacattaggagcatggaagacacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaggtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaactttttgggtcatagcgtgtgtgtgtatttcataagagtgtttgtattaaattactgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25884" stop="24676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25584" g_stop="24975" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E352772" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25584" e_stop="24975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAAC</genome_strand>
        <mrna_strand>TCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGAGTGTTTGTATTAAATTACTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350268" ref_strand="+" ref_description="SGN-E350268 [cTOS-4-B12]">
      <seq>acacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaggtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaactttttggggcatagcgtgtgtgtgtatttcataagcatggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25826" stop="24693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25526" g_stop="24993" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E350268" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25526" e_stop="24993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTG</genome_strand>
        <mrna_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGGCATAGCGTGTGTGTGTATTTCATAAGCATGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356322" ref_strand="+" ref_description="SGN-E356322 [cTOS-20-C22]">
      <seq>acacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaagtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25826" stop="24731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25526" g_stop="25031" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E356322" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25526" e_stop="25031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTT</genome_strand>
        <mrna_strand>ACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAAGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335479" ref_strand="+" ref_description="SGN-E335479 [cTOE-2-I15]">
      <seq>tttctaatttcttacattttggccaaacaaatggtgtcgcgtgaataagcactgccaagccaaaccatggttagtcatctctgtacaaccccaccaaatgaggaaaatatctaatctatgtatgtatgcacctcacctccccagagactagagagaaagcgtctgtgcgtgtttctctcatgtacgtttatgattgaatcgacattaggagcatggaagacacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagttactctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26045" stop="24816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25745" g_stop="25116" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E335479" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25745" e_stop="25116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAATTTCTTACATTTTGGCCAAACAAATGGTGTCGCGTGAATAAGCACTGCCAAGCCAAACCATGGTTAGTCATCTCTGTACAACCCCACCAAATGAGGAAAATATCTAATCTATGTATGTATGCACCTCACCTCCCCAGAGACTAGAGAGAAAGCGTCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTA</genome_strand>
        <mrna_strand>TTTCTAATTTCTTACATTTTGGCCAAACAAATGGTGTCGCGTGAATAAGCACTGCCAAGCCAAACCATGGTTAGTCATCTCTGTACAACCCCACCAAATGAGGAAAATATCTAATCTATGTATGTATGCACCTCACCTCCCCAGAGACTAGAGAGAAAGCGTCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTACTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548153" ref_strand="+" ref_description="SGN-E548153 [TUS-58-J7](-)">
      <seq>aattcttttaatttttcatatatcaatggaagacacctctaacttcaatcgccatcgtcaaaccataaccaaatcaaactctcgtaagataaataataatcgccatcgcgttcgtgacaactctaccgtggattttaacatggaggaaggtgattcttctgagatgtggaacaatttttccaacaattttaggcaagtgcagtctgtgttggatcgaaatagattgttgattcaacaagttaacgagaatcatcaatcgagaacccccgatagcatggtgcagaacgtgagcttaattcaagaactcaatggaaacatatcaaaggtttcgtctatatattctgatttcaacactgacttcacaaacatgattcatcaacggaagaatgatgtttgagattgactatcaatctgcagtgcttctacgtataataaacttttcaagtatattattatcaattaagctgcaagttgtaattttacaacatgatatgatgtttcttttctatctccaaatttcatatgaaatcaaatatattatgttggcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42283" stop="41111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41983" g_stop="41431" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="595"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E548153" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41983" e_stop="41431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATTTA</genome_strand>
        <mrna_strand>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACCCCCGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539031" ref_strand="+" ref_description="SGN-E539031 [TUS-58-J7]">
      <seq>aattcttttaatttttcatatatcaatggaagacacctctaacttcaatcgccatcgtcaaaccataaccaaatcaaactctcgtaagataaataataatcgccatcgcgttcgtgacaactctaccgtggattttaacatggaggaaggtgattcttctgagatgtggaacaatttttccaacaattttaggcaagtgcagtctgtgttggatcgaaatagattgttgattcaacaagttaacgagaatcatcaatcgagaacacacgatagcatggtgcagaacgtgagcttaattcaagaactcaatggaaacatatcaaaggtttcgtctatatattctgatttcaacactgacttcacaaacatgattcatcaacggaagaatgatgtttgagattgactatcaatctgcagtgcttctacgtataataaacttttcaagtatattattatcaattaagctgcaagttgtaattttacaacatgatatgatgtttcttttctatctccaaatttcatatgaaatcaaatatattatgttggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42283" stop="41133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41983" g_stop="41433" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E539031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41983" e_stop="41433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATT</genome_strand>
        <mrna_strand>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279707" ref_strand="+" ref_description="SGN-E279707 [cLER-5-J23]">
      <seq>attcttttaatttttcatatatcaatggaagacacctctaacttcaatcgccatcgtcaaaccataaccaaatcaaactctcgtaagataaataataatcgccatcgcgttcgtgacaactctaccgtggattttaacatggaggaaggtgattcttctgagatgtggaacaatttttccaacaattttaggcaagtgcagtctgtgttggatcgaaatagattgttgattcaacaagttaacgagaatcatcaatcgagaacacacgatagcatggtgcagaacgtgagcttaattcaagaactcaatggaaacatatcaaaggtttcgtctatatattctgatttcaacactgacttcacaaacatgattcatcaacggaagaatgatgtttgagattgactatcaatctgcagtgcttctacgtataataaacttttcaagtatattattatcaattaagctgcaagttgtaattttacaacatgatatgatgtttcttttctatctccaaatttcatatgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42282" stop="41154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41982" g_stop="41454" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E279707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41982" e_stop="41454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATC</genome_strand>
        <mrna_strand>ATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44034" stop="45016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44334" g_stop="44716" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44334" e_stop="44716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTAGCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTCTTTAACTCATGTTTTGGTTTATCTCGTTATGAGAATCAAGGTATTATATGCATAAATTAAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAATATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATTTGACATGCTATACAAAACTTCTTAAATTGAAGAA-GTGTAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTATTTTGAAAGACTCAAAGGGTGAGTCATGTTGTACTTCGGTCTATTATACCGTTGGT-TAGGGTAAGACGATGGATTCAAATTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48015" stop="46747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47715" g_stop="47047" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47715" e_stop="47047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATATTCATTGCATTCAAG-TTTTCATATTTCGCCAGATCAAAACAAACCTCATTGCATCCACCAAAAGAGAAAACATCTCCAATAATGTCAGGATTTTTGTGAAAAATCTTTATG-CCCAAGGCACAAACCGTATTTGATATATTACGGTTATACTATCGCATAATTATTTATTTGTACCCCACTGACATTATACCTTGATTTATGTACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTATGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTAAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGATGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGGGATGTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCACATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTCATATTTGGAATCGATTGGTCAATTACGCTTCCGGCGTATTATAAACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C-A-ATTTTTC-AT-TACA-TGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48015" stop="47020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47715" g_stop="47320" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47715" e_stop="47320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATATTCATTGCATTCAAG-TTTTCATATTTCGCCAGATCAAAACAAACCTCATTGCATCCACCAAAAGAGAAAACATCTCCAATAATGTCAGGATTTTTGTGAAAAATCTTTATG-CCCAAGGCACAAACCGTATTTGATATATTACGGTTATACTATCGCATAATTATTTATTTGTACCCCACTGACATTATACCTTGATTTATGTACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTATGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTAAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C-A-ATTTTTC-AT-TACA-TGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47028" stop="48299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47328" g_stop="47999" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47328" e_stop="47999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTGTGCCTT-GGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAA-CTTGAATGC----AATGAAT-ATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG--AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47029" stop="48177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47329" g_stop="47877" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47329" e_stop="47877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTGTGCCTT-GGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAA-CTTGAATGC----AATGAAT-ATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG--AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47033" stop="48079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47333" g_stop="47779" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47333" e_stop="47779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTG-TGCCTTGGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAA-CTTGAATGC----AATGAAT-ATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47077" stop="48253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47377" g_stop="47953" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47377" e_stop="47953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTGTGCCTT-GGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAA-CTTGAATGC----AATGAAT-ATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG--AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47428" stop="48437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47728" g_stop="48137" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47728" e_stop="48137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTACAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAG-AAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47505" stop="48585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47805" g_stop="48285" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47805" e_stop="48285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTACAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAACACATGATTGAATATCCTCGAAGGACCATCGTTATGGGCTTATTCTATTCCGAGGAATCCAAGACAAAATTGATTGGTTAAGCAGATGCAGAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61822" stop="63146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62846" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACATCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATGTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGATTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG--TTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGG-AAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61822" stop="63071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62771" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACATCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATGTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGATTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG--TTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGG-AAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61822" stop="62995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62695" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACATCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATGTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGATTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG--TTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62318" stop="63204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62618" g_stop="62904" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62618" e_stop="62904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGG-AAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63643" stop="62611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63343" g_stop="62911" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63343" e_stop="62911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATTCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62678" stop="63831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62978" g_stop="63531" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62978" e_stop="63531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGAATTGTCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGATCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCCTGTAATGACAAGTGATCAACATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGAAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGACCTCGTTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64001" stop="62682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63701" g_stop="62982" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63701" e_stop="62982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGTCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTTCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATTCCTCATTCTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63998" stop="62735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63698" g_stop="63035" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63698" e_stop="63035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGTCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTTCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATT-CCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64638" stop="63249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64338" g_stop="63549" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64338" e_stop="63549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64562" stop="63265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64262" g_stop="63565" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64262" e_stop="63565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63305" stop="65313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63605" g_stop="63791" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63792" i_stop="64535" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64536" g_stop="65049" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63605" e_stop="63791"/>
          <exon e_start="64536" e_stop="65049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACTCCACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGATTGACTCTAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGTTTTCCCTAGGCGGTCTGAAGCGGAGGCATCTGATGTTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTACTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTTATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGTTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAAAGCTAAAACGGTGACGTTAGCCAAGCCTGGAATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCTGCATCGTCTCCTTTCTTCGTGATAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64718" stop="63355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64418" g_stop="63655" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64418" e_stop="63655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGA-GGACTGAAACAGAGTGGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64636" stop="63503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64336" g_stop="63803" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64336" e_stop="63803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64722" stop="63564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64422" g_stop="63864" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64422" e_stop="63864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65332" stop="63971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65032" g_stop="64271" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65032" e_stop="64271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTATCACGAAGAAAGGAGACGATGCAGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATTCCAGGCTTGGCTAACGTCACCGTTTTAGCTTTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAAACAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65332" stop="64072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65032" g_stop="64372" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65032" e_stop="64372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTATCACGAAGAAAGGAGACGATGCAGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATTCCAGGCTTGGCTAACGTCACCGTTTTAGCTTTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAAACAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65850" stop="64572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65550" g_stop="64871" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65550" e_stop="64871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65921" stop="64609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65621" g_stop="64909" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65621" e_stop="64909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65921" stop="64726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65621" g_stop="65026" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65621" e_stop="65026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65921" stop="64796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65621" g_stop="65096" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65621" e_stop="65096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65850" stop="64892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65550" g_stop="65192" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65550" e_stop="65192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67401" stop="66624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67101" g_stop="66925" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67101" e_stop="66925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAACGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547123" ref_strand="+" ref_description="SGN-E547123 [TUS-70-N12](-)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84582" stop="85699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84881" g_stop="85399" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-E547123" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84881" e_stop="85399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACTAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245630" ref_strand="+" ref_description="SGN-E245630 [cLEF-43-P3]">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89082" stop="87583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88790" g_stop="88510" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88509" i_stop="88308" i_length="202">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88307" g_stop="88185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88184" i_stop="88102" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88101" g_stop="87883" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E245630" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88790" e_stop="88510"/>
          <exon e_start="88307" e_stop="88185"/>
          <exon e_start="88101" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTTACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCAATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAGGTAATGTTTATGATACAGTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTTCTCATTTTATATTCTGTCATGTATCATTCATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG..........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543213" ref_strand="+" ref_description="SGN-E543213 [TUS-64-O16](-)">
      <seq>aatttggtatagatgattttgcattattaacaggacttaaggtcagaggaaataccaatgatttcaaatacccagaacaaactaattgtatgctttttaaaaagtatttccctggtgcagtcaatagtgttacaaagcatcaactagttcaaaggtttaagatgggtaattgggagagcaatcaggatgcactccaaatgtctatactgttctttattcatacatttgtattagcttctattgataacacagcgatatctattgtcgactttctaatggttgaagatggtagatatcaacattttccttggggtcagctatcattttccaaactaattggttcacttagacaggattttgacgttagtaaaaagttgtaccgattatatgggatgccatatgcactaaatgtttggatatacgaatgtgcatccaatttaaattcagaaatagttgtgagagaacgcaatgtcatcccaagaatatgcaattggagagttgtgtctgaaaaggcaaagtttgaaatgcttatgtccaccattttccaaaagttagaatgcatgttcaaacattgtcccaacagcagaggaaattgaagcttttgatattgctcaagttgaacatgctcattctacatcaataccattagtacaaccaaacgagcaagatgatttagatgatttctccacaagaccgccagaacagttattgaggacatattctagagtgtctgatacatctcctccaccaccgccaaaaaagaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90342" stop="88872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90042" g_stop="89492" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89491" i_stop="89394" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89393" g_stop="89175" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="770" r_length="219" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E543213" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90042" e_stop="89492"/>
          <exon e_start="89393" e_stop="89175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAGGTAAAATTTTATTTTTGTATATGGAATATCGTTATTTATGTCTTTGTGATACATTACTGTATCTAACAGTTAAATTATCTTATGTGTTTGTGATACATTTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTGGATGATTTCTCCACAAAACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAGAAGAAAAAA</genome_strand>
        <mrna_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGTTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG..................................................................................................TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689688" ref_strand="+" ref_description="SGN-E689688 [LH_Ea01I22]">
      <seq>cattatctgactggacttaccatcgacaaattcaatgggattatattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactagggcataagttaataaataatactatatctagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacttttgttccacaagttggagatggaatattcccaacttagaataacatatcaccgtgtaattgctcctttggtaaagatatctgtcctttgatccttgcttgctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94997" stop="94053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94701" g_stop="94354" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="365"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E689688" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94701" e_stop="94354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTTGCTTGCT</genome_strand>
        <mrna_strand>CATTATCTGACTGGACTTACCATCGACAAATTCAATGGGATTATATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGGCATAAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTAGAATAACATATCACCGTGTAATTGCTCCTTTGGTAAAGATATCTGTCCTTTGATCCTTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693528" ref_strand="+" ref_description="SGN-E693528 [LH_Ea01I22](-)">
      <seq>atctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattacttttggcccaactagggcataagttaataaataatactatatttagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacttttgttccacaagttggagatggaatattcccaaatgggaataacatatccccgtgtaattgctcctttggtaaaaatgtctgtcctttgatccttgcttgcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94997" stop="94053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94697" g_stop="94357" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E693528" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94697" e_stop="94357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTTGCTT</genome_strand>
        <mrna_strand>ATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTTTTGGCCCAACTAGGGCATAAGTTAATAAATAATACTATATTTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAAATGGGAATAACATATCCCCGTGTAATTGCTCCTTTGGTAAAAATGTCTGTCCTTTGATCCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226026" ref_strand="+" ref_description="SGN-E226026 [cLEL-31-E23](-)">
      <seq>ttcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctaaattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactaggcctttagttaataaataatactatatctagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacttttgttccacaagttggagatggaatattcccaacttacaataacatatcaccgtgtaattgctcctttggtaaatatatctgtcctttgatccttgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94971" stop="94060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94671" g_stop="94361" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="335"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E226026" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94671" e_stop="94361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTT</genome_strand>
        <mrna_strand>TTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTAAATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694728" ref_strand="+" ref_description="SGN-E694728 [LH_Ea04K22](-)">
      <seq>aaaaattgcaactcatctcaagagcctctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattcagaggcctgcatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagctgagtggacacctagtttacactggaaatcaatggcaacagaatttcgtgaagattctccttgtgatttggttttagcagatggtaaaaccacaataaacccatctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactagggcataagttaataaataatactatatctagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacaaaggttccacaagttggagatggaatattcccaacttttaaaaggatatcacccgtgtaattgctcctttggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96490" stop="94078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96190" g_stop="96169" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96168" i_stop="95876" i_length="293">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="99" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="249" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94871" g_stop="94387" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="735" r_length="486" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="754"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E694728" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96190" e_stop="96169"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCA-CCGTGTAATTGCTCCTTTG</genome_strand>
        <mrna_strand>AAAAATTGCAACTCATCTCAAG.....................................................................................................................................................................................................................................................................................................AGCCTCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCAGAGGCCTGCATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCGTGAAGATTCTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGGCATAAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACAAAGGTTCCACAAGTTGGAGATGGAATATTCCCAACTTTTAAAAGGATATCACCCGTGTAATTGCTCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394822" ref_strand="+" ref_description="SGN-E394822 [TUS-42-M20](-)">
      <seq>ccacaataaacccatttgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactaggcctttagttaataaataatactatatctagtgttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95010" stop="94201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94710" g_stop="94491" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E394822" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94710" e_stop="94491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATT</genome_strand>
        <mrna_strand>CCACAATAAACCCATTTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTG-TTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694727" ref_strand="+" ref_description="SGN-E694727 [LH_Ea04K21](-)">
      <seq>aattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattcagaggcctgcatagagctatgcaaagagatgaatccgaaggttgttgatctttggacagcacttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagctgagtggacacctagtttcccctggaaatcaatggcaacagaatttcgtgaagattctccttgtgatttggttttagcagatggtaaaaccacaataaacccatctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactagggcataagttaagaaataatcctatatctagtgtttgtaattatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95969" stop="94194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95816" g_stop="95799" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="168" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94871" g_stop="94494" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="546" r_length="378" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E694727" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95816" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTG</genome_strand>
        <mrna_strand>AATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCAGAGGCCTGCATAGAGCTATGCAAAGAGATGAATCCGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACACCTAGTTTCCCCTGGAAATCAATGGCAACAGAATTTCGTGAAGATTCTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGGCATAAGTTAAGAAATAATCCTATATCTAGTGTTTGTAATTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690640" ref_strand="+" ref_description="SGN-E690640 [LH_Ea04A14]">
      <seq>cattaaatattcgcataatttttctcagttgtccacctgccgtcgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattcagaggcctgcatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagctgagtggacacctagtttacactggaaatcaatggcaacagaatttcgtgaagattctccttgtgatttggttttagcagatggtaaaaccacaataaacccatctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactagggcataagttaataaataatactatatctagtgtttgtaattaaacaacaacaaaaaagaaaaagtaaactatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96163" stop="94198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95868" g_stop="95799" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="220" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94871" g_stop="94499" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="593" r_length="373" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E690640" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95868" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATT</genome_strand>
        <mrna_strand>CATTAAATATTCGCATAATTTTTCTCAGTTGTCCACCTGCCGTCGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCAGAGGCCTGCATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCGTGAAGATTCTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGGCATAAGTTAATAAATAATACTATATCTAGTGTTTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694480" ref_strand="+" ref_description="SGN-E694480 [LH_Ea04A14](-)">
      <seq>gaatattcggataatttttttcagttgtccccctgtgggcgaggcccgaatttgtgaaaatacaagggcatatttcagtgagttggttcgaacaaatgaattgtgttgtccgtattcagaggcctgcatagaggtatgcaaaaagacgaatttgaaggttgttgatctttggccagcccttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcgggggaggggagtaaaataattgttgaagagatcctcaaggtgttgaaggaagctgagtggacccctagttttctctggaaatcaatggcaacagaatttcgtgaagattttccttgtgatttggttttagcagatggtaaaaccccaataaacccatttgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaaggtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaaaaaagggtggcccaactagggcataagttaataaatcattataagtttagtgtttgtaatcaaaccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95969" stop="94260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95864" g_stop="95799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.840" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="216" r_length="150" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94871" g_stop="94502" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="586" r_length="370" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="613"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E694480" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95864" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTA</genome_strand>
        <mrna_strand>GAATATTCGGATAATTTTTTTCAGTTGTCCCCCTGTGGGCGAGGCCCGAATTTGTGAAAATACAAG.......................................................................................................................................GGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTTGTCCGTATTCAGAGGCCTGCATAGAGGTATGCAAAAAGACGAATTTGAAGGTTGTTGATCTTTGGCCAGCCCTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGGGGAGGGGAGTAAAATAATTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACCCCTAGTTTTCTCTGGAAATCAATGGCAACAGAATTTCGTGAAGATTTTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCCCAATAAACCCATTTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAAGGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAAAAAAGGGTGGCCCAACTAGGGCATAAGTTAATAAATCATTATAAGTTTAGTGTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732085" ref_strand="+" ref_description="SGN-E732085 [LB01BA01]">
      <seq>aggcgcttatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagaaaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagccgagtggacacctagtttacactggaaatcaatggcaacagaatttcctgaagattctccttatgatttggttttagcagatggtaaaaccacaataaacccatctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattggaaattactctttggcccaactagggcctttatttaataaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98501" stop="94215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98210" g_stop="98084" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="204" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="345" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="422" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="572" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94871" g_stop="94514" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="933" r_length="361" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E732085" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98210" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATT-GAAATTACTC-TTGGCCCAACTA-GGCCTTTAGTTAATAAATAATACTATAT</genome_strand>
        <mrna_strand>AGGCGCT-TATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGGAAATTACTCTTTGGCCCAACTAGGGCCTTTATTTAATAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549633" ref_strand="+" ref_description="SGN-E549633 [TUS-6-F7](-)">
      <seq>taatgattcaatgggacctcattcatctggattgggtcctcatgtacgtcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagaaaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagccgagtggacacctagtttacactggaaatcaatggcaacagaatttcctgaagattctccttatgatttggttttagcagatggtaaaaccacaataaacccatctgactggacttaccatcgacaaattcaatgggattagattatccttcaaacataaaggttaacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactctggcgacaactaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96685" stop="94249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96385" g_stop="96289" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="174" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="324" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94871" g_stop="94537" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="659" r_length="335" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E549633" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96385" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCT</genome_strand>
        <mrna_strand>TAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACGTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTATCCTTCAAACATAAAGGTTAACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTGGCGACAACTAGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622365" ref_strand="+" ref_description="SGN-E622365 [72731]">
      <seq>gtaaaagggggggaaattgaagagaaggaaatatgaggttataacaaggaaggaagagaatagggttgcggtgaattgagaatggtgggaccacagaggccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggtgcaattctctctgacatttatgcccgcaaagcggacgtattattgcgaggttactatggttggaactcaagatgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgatagtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcctctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgagttatgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagagaagattggttggctgcttgtttcacggatgggattcacttagcagaggaggggagtaaaatagttgttgaagagatcctcaaggtgttaaaggaagctgagtggacacctagtttacactggaaatccatggcaacagatttcctgaagattctccttatgatttggttttagacagatggtaaaatccacaataaaccccatctgactggacctaccatcgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98550" stop="94375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98223" g_stop="98084" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="192" r_length="139" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="270" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="411" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="488" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="638" r_length="150" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94871" g_stop="94674" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="838" r_length="200" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E622365" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98223" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAG-CAGATGGTAAAA-CCACAATAAA-CCCATCTGACTGGACTTACCATCGACA</genome_strand>
        <mrna_strand>AAGAGAATA-GGGTTGCGGTGAATTGAGAATGGTGGGACCACAGAGGCCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGTGCAATTCTCTCTGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACGTATTATTGCGAGGTTACTATGGTTGGAACTCAAGATGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATAGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAGTTATGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGGCTGCTTGTTTCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCAGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTAAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCCATGGCAACAG-ATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGACAGATGGTAAAATCCACAATAAACCCCATCTGACTGGACCTACCATCGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466186" ref_strand="+" ref_description="SGN-E466186 [cPRO-23-O18]">
      <seq>gaatagggttgcggtgaattgagaatggtgggaccacagaggccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggtgcaattctctctgacatttatgcccgcaaagcggacgtattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgatagtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcctctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgagttatgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagagaagattggttggctgcttgtttcacggatgggattcacttagcagaggaggggagtaaaatagttgttgaagagatcctcaaggtgttaaaggaagctgagtggacacctagtttacactggaaatccatggcaacagaatttcctgaagattctccntatgatttggttttagcagatggtaaatccacaataaacccatctgactggaccctacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98519" stop="94386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98219" g_stop="98084" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="213" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="354" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="431" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="581" r_length="150" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94871" g_stop="94678" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="775" r_length="194" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E466186" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98219" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATC</genome_strand>
        <mrna_strand>GAATA-GGGTTGCGGTGAATTGAGAATGGTGGGACCACAGAGGCCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGTGCAATTCTCTCTGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACGTATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATAGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAGTTATGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGGCTGCTTGTTTCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCAGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTAAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCCATGGCAACAGAATTTCCTGAAGATTCTCCNTATGATTTGGTTTTAGCAGATGGTAAATCCACAATAAACCCATCTGACTGGACCCTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690887" ref_strand="+" ref_description="SGN-E690887 [LH_Ea04K21]">
      <seq>tcctcgtgccgaattcggcacgagggagaagagaaaaagggtttcggtgaatcgaggatggttggaccacagaggccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcctctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattcagaggcctgcatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagctgagtggacacctagtttacactggaaatcaatggcaacagaatttcgtgaagattctccttgtgatttggttttagcagatggtaaaaccacaataaacccatctgactggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98526" stop="94384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98225" g_stop="98084" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="168" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="246" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="387" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="464" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="614" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94871" g_stop="94684" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="802" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E690887" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98225" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTT</genome_strand>
        <mrna_strand>AGAAGAGAAAAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGGCCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCAGAGGCCTGCATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCGTGAAGATTCTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690888" ref_strand="+" ref_description="SGN-E690888 [LH_Ea04K22]">
      <seq>cctgtatcgtgccgaattcggcacgagggagaagagaaaacgtgtttcggtgaatcgaggatggttggaccacagaggccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcctctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattcagaggcctgcatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagctgagtggacacctagtttacactggaaatcaatggcaacagaatttcgtgaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98526" stop="94444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98225" g_stop="98084" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="171" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="249" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="390" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="467" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="617" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94871" g_stop="94744" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="745" r_length="128" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E690888" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98225" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATT</genome_strand>
        <mrna_strand>AGAAGAGAAAACGTGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGGCCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCAGAGGCCTGCATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCGTGAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259331" ref_strand="+" ref_description="SGN-E259331 [cLEG-43-M21]">
      <seq>ttatgcctcgcaaagcggacatattattgcgaggttacctatggttggaactcaagacgtgctataccaggtccttgatcaagtgtttccaaaggatgccaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaataccaagtgcatatttcagtgagttggttcgaaccaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggaccagcacttcagaaaagaaaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagccgagtggacacctagtttacactggaaatcaatggcaacagaatttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97204" stop="94450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="94" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="236" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="314" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="466" r_length="152" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94871" g_stop="94750" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="588" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E259331" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACATATTATTGCGAGGTTA-CTATGGTTGGAACTCAAGACGTGCTATA-CAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATG-CAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATA-CAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAA-CAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGA-CAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTG</genome_strand>
        <mrna_strand>GCGGACATATTATTGCGAGGTTACCTATGGTTGGAACTCAAGACGTGCTATACCAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACCAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACCAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACCAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259352" ref_strand="+" ref_description="SGN-E259352 [cLEG-43-B15]">
      <seq>ttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagaaaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagccgagtggacacctagtttacactggaaatcaatggcaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97204" stop="94457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="91" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="232" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="309" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="459" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94871" g_stop="94757" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="574" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E259352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAA</genome_strand>
        <mrna_strand>GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550551" ref_strand="+" ref_description="SGN-E550551 [TUS-6-F7]">
      <seq>agaagagaagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagaaaagattggttgactgcttgttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98535" stop="95214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98235" g_stop="98084" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="230" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="371" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="448" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="598" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E550551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98235" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC</genome_strand>
        <mrna_strand>AGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244394" ref_strand="+" ref_description="SGN-E244394 [cLEF-3-J17]">
      <seq>agagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaagttgttgatctttggacagcactttagaaaagaaaagattggttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98527" stop="95224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98227" g_stop="98084" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="222" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="363" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="440" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95524" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="580" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E244394" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98227" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTG</genome_strand>
        <mrna_strand>AGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAAGTTGTTGATCTTTGGACAGCACTTTAGAAAAGAAAAGATTGGTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306176" ref_strand="+" ref_description="SGN-E306176 [cLEY-13-M11]">
      <seq>aaaagaggggaagattgaaagatgaggttataacaaggaagggaagaggagagaagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcgattgttcactctggatgggctactgtttactatagtggtaatgaggaaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttatctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98581" stop="95248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98281" g_stop="98084" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="276" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="417" r_length="141" r_score="0.894"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="494" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95548" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="610" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E306176" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98281" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTC</genome_strand>
        <mrna_strand>AAAAGAGGGGAAGATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGGAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCGATTGTTCACTCTGGATGGGCTACTGTTTACTATAGTGGTAATGAGGAAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTATCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243505" ref_strand="+" ref_description="SGN-E243505 [cLED-34-D24]">
      <seq>gaagagaagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98534" stop="95318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98234" g_stop="98084" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="229" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="370" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="447" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95618" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="493" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E243505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98234" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAG</genome_strand>
        <mrna_strand>GAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208410" ref_strand="+" ref_description="SGN-E208410 [cLEC-37-J1]">
      <seq>tttgaattgaatggagtaatacaaaagaggggaaaattgaaagatgaggttataacaaggaagggaagagaagagaagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98603" stop="95342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98303" g_stop="98084" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="298" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="439" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="516" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95642" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="538" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E208410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98303" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATTGAATGGAGTAATACAAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTT</genome_strand>
        <mrna_strand>TTTGAATTGAATGGAGTAATACAAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397651" ref_strand="+" ref_description="SGN-E397651 [TUS-46-A10]">
      <seq>acaacagaagataagaaaataatggtttcggtgaatcgaggatggttggaccacttagagcacacttcgttctctttggatccgctattgatcaaatcagttacagcaatggcggttggggctctaatctctccaacgtttatgcccgcacagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgaaaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcacttgtccacctggggggggggggcgaattcgtgaaaatacaagttcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98535" stop="95490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98235" g_stop="98084" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="230" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="371" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="448" r_length="77" r_score="0.883"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.840" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95655" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="457" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E397651" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98235" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTT</genome_strand>
        <mrna_strand>ACAACAGAAGATAAGAAAATAATGGTTTCGGTGAATCGAGGATGGTTGGACCACTTAGAGCACACTTCGTTCTCTTTGGATCCGCTATTGATCAAATCAGTTACAGCAATGGCGGTTGGGGCTCTAATCTCTCCAACGTTTATGCCCGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAAAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCACTTGTCCACCTGGGGGGGGGGGGCGAATTCGTGAAAATACAAG.......................................................................................................................................TTCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257912" ref_strand="+" ref_description="SGN-E257912 [cLEG-39-P18]">
      <seq>agaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98520" stop="95496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98220" g_stop="98084" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="215" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="356" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="433" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95658" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="439" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E257912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98220" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATA</genome_strand>
        <mrna_strand>AGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248297" ref_strand="+" ref_description="SGN-E248297 [cLEG-1-C11]">
      <seq>tctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98408" stop="95499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98084" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="244" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="321" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E248297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG</genome_strand>
        <mrna_strand>TCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237572" ref_strand="+" ref_description="SGN-E237572 [cLED-19-F18]">
      <seq>agaagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98530" stop="95544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98230" g_stop="98084" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="225" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="366" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95844" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="398" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E237572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98230" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCT</genome_strand>
        <mrna_strand>AGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473721" ref_strand="+" ref_description="SGN-E473721 [cSTB-33-B9]">
      <seq>gaagagaatagggttgcggtgaattgagaatggtgggaccacagaggccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggtgcaattctctctgacatttatgcccgcaaagcggacgtattattgcgaggatactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgatagtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcgactcatctcaagagcctctcagagaatattcgcataatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98524" stop="95545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98224" g_stop="98084" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="218" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="359" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95845" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="390" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E473721" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98224" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTC</genome_strand>
        <mrna_strand>GAAGAGAAT-AGGGTTGCGGTGAATTGAGAATGGTGGGACCACAGAGGCCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGTGCAATTCTCTCTGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACGTATTATTGCGAGGATACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATAGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCGACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCTCAGAGAATATTCGCATAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309964" ref_strand="+" ref_description="SGN-E309964 [cTOA-4-G3]">
      <seq>aagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaaggtatcttattttactacaataatgtccttttcttttgttttcgagctgcctgtttgctatttttatctataaaaatatgaacacattgagaacatgagaaaaattgcaactcatctcaaggtatcttattttactacaataatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98528" stop="95843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98228" g_stop="98084" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="223" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96143" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="510" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E309964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98228" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTC</genome_strand>
        <mrna_strand>AAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394774" ref_strand="+" ref_description="SGN-E394774 [TUS-42-L19]">
      <seq>gaagagaataaggctcttggagaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcccttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacatgctatacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98524" stop="96548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98224" g_stop="98084" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96848" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="196" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E394774" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98224" e_stop="98084"/>
          <exon e_start="96902" e_stop="96848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGG</genome_strand>
        <mrna_strand>GAAGAGAATAAGGCTCTTGGAGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCCCTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACATGCTATACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224748" ref_strand="+" ref_description="SGN-E224748 [cLEL-27-F21](-)">
      <seq>aggccgggtttgcgtaatgcacatagcagtgtggcttttacaactttcagaaagcattgacattgtgaaagcaagtatacttccaattttattggatgtccactaacatagtgaaagcaactaacaatcaggagatgtttgatatggaattttgttcaaaactttctatagaaggtggattcattaattttattttatttttgcaattcttttgtaatatgctgcatttacaaatttttaagcagaatgaacctcttagactaggctagggaagcaaaaatgtttatttggttgtgaatcatcctaggatattaatggtatgttagccataaattgtgcaatttcttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106364" stop="7973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106064" g_stop="105717" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105716" i_stop="103994" i_length="1723">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103993" g_stop="103976" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="367" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E224748" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106064" e_stop="105717"/>
          <exon e_start="103993" e_stop="103976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAAC-TTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTTATGGCAGACTTTTTATCTATCAACTTTTGGAGAATCGCGTTTCGATTACAAACAAGCTTTCAATTCTTGTTCCAAATTTAAGTATATTAGGGGTTGACATTTACTTGAACGATTGCTGATAGTAAAAGTGATACCAGGTTGATTTTCCTCAAGTCACATTATTATACAACCTTCATAAATTTCTCACTTATCCTAGTGAGATTTTACTTTTATCTATCCATCTATAAATTGTCATACTGAGTTAGCATTCCATGTGTAACAAAATGTGTTGAGAAGATGATCTCCAACTTATAATTATAATTTGAATTTCGAATCTAGAGTGAGATCCATCTCGAGAAATTCTCTTATACTCATCCTTTTATGTCATGAATCATACTCTTGAAAGACATGTTAACACCTATATCTCAACTAATAACAAACACCCAATGTCCACAACGGTAACACAATCTCTTTCTATACTTGCAAACCAAAAAAGCAACACCCAGTACCTTTTCAAGAATCAATCTTGAATGAAAATTTTGCAACATACCAATAATCCTCCTTCACCTAGTACCCAAGTCCTGCTTCTAAAGTCAGTTATATTGTACAATCCACCATAAACATACACCAAAATTAATAATACTAACTAGTCTTGTGTAAAGAAAAAGATCCTTAAAGAAGGTGTAAAATAAATATGTGATTGAAGTGTTATATTGGAATACATACAAGTGCAGAAATATTGAGATATTAAATGTGGCAAGGAAAGGTAGTTGAGAATTTTAGATACCTCCATAATCTGCCCCATCCGTGTACTGCTTCTCTTGCAATTAATTACTGCAATAATTAAACAGTTGCCATTTTCCTCATTTCATTTTCCCATTTGGTACAACATTCAACAAACACATTAATGACAAGTGTAAACAGTAGCTCACAAAGACTTTCTCTTTCACCCTTATTTCAATTTTGGTCTTGGTCTGATTTTAAAAGAGTAATTGCTTTCTGAATTCAAATTTAATTTCATTTATGCTTCCTACTTACACTTTAGCAATGAGTATTTGTGACGTATTTAAGATTATAAATTTAAAAAACTTATAGAAAATTTCATGAAACATTGAATTTTCATAATACTTTTCATGCTTGTTGAGGTGTTTCATAATTTTTACGAAAAGAAGATTAGGATATAAATTAGACTTTACTTTTCATTTTTTCCCTTATTAATTATTATCAAATTAATTTTTAGAATAATTCAAAGCAATTAAAGTTTCTTGAATTCATCCCATCGAAAATCTAAATGAAGAGTAAACATTGAAAAATATTTTAAAAATAGTCTTGAAAGTTGTACAATTAAGTTAATTTTAAAATATGAAAAATGTCTCAACTCTCAACAATTCAATTATTTGAAACAAAGGGAGTAGTATTGTTTTTTTAGCTGATGTTCGGAACTTGTATTGGAGCCCAATCCATTTTATATCTCGAATTCAAATTCAAAACTTCAGGCCAAGAATGAAATAGGCGTCCTAAGTATTTCATAGGCATAATACATAAAAATGACCGTAATTTGATTTTAGCGGACAACGACGACTTCTAACGTTGAGTGAGCACAAGTAAGATACATAAATTTATATAAAAATTGAACAAGTAGACACACATGTCTTGCATGACATAATACACGTACGATACAAAATTGTCATATAATATCCATTTACTCTTTTTTATACAAGTGCGCACTTGTTGTAAAATCAAGATTATAAGAAGAAGATAA</genome_strand>
        <mrna_strand>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224528" ref_strand="+" ref_description="SGN-E224528 [cLEL-27-F21](-)">
      <seq>aggccgggtttgcgtaatgcacatagcagtgtggcttttacaacttcagaaagcattgacattgtgaaagcaagtatacttccaattttattggatgtccactaacatagtgaaagcaactaacaatcaggagatgtttgatatggaattttgttcaaaactttctatagaaggtggattcattaattttattttatttttgcaattcttttgtaatatgctgcatttacaaatttttaagcagaatgaacctcttagactaggctagggaagcaaaaatgtttatttggttgtgaatcatcctaggatattaatggtatgttagccataaattgtgcaatttcttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106364" stop="7973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106064" g_stop="105717" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105716" i_stop="103994" i_length="1723">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103993" g_stop="103976" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="366" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E224528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106064" e_stop="105717"/>
          <exon e_start="103993" e_stop="103976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTTATGGCAGACTTTTTATCTATCAACTTTTGGAGAATCGCGTTTCGATTACAAACAAGCTTTCAATTCTTGTTCCAAATTTAAGTATATTAGGGGTTGACATTTACTTGAACGATTGCTGATAGTAAAAGTGATACCAGGTTGATTTTCCTCAAGTCACATTATTATACAACCTTCATAAATTTCTCACTTATCCTAGTGAGATTTTACTTTTATCTATCCATCTATAAATTGTCATACTGAGTTAGCATTCCATGTGTAACAAAATGTGTTGAGAAGATGATCTCCAACTTATAATTATAATTTGAATTTCGAATCTAGAGTGAGATCCATCTCGAGAAATTCTCTTATACTCATCCTTTTATGTCATGAATCATACTCTTGAAAGACATGTTAACACCTATATCTCAACTAATAACAAACACCCAATGTCCACAACGGTAACACAATCTCTTTCTATACTTGCAAACCAAAAAAGCAACACCCAGTACCTTTTCAAGAATCAATCTTGAATGAAAATTTTGCAACATACCAATAATCCTCCTTCACCTAGTACCCAAGTCCTGCTTCTAAAGTCAGTTATATTGTACAATCCACCATAAACATACACCAAAATTAATAATACTAACTAGTCTTGTGTAAAGAAAAAGATCCTTAAAGAAGGTGTAAAATAAATATGTGATTGAAGTGTTATATTGGAATACATACAAGTGCAGAAATATTGAGATATTAAATGTGGCAAGGAAAGGTAGTTGAGAATTTTAGATACCTCCATAATCTGCCCCATCCGTGTACTGCTTCTCTTGCAATTAATTACTGCAATAATTAAACAGTTGCCATTTTCCTCATTTCATTTTCCCATTTGGTACAACATTCAACAAACACATTAATGACAAGTGTAAACAGTAGCTCACAAAGACTTTCTCTTTCACCCTTATTTCAATTTTGGTCTTGGTCTGATTTTAAAAGAGTAATTGCTTTCTGAATTCAAATTTAATTTCATTTATGCTTCCTACTTACACTTTAGCAATGAGTATTTGTGACGTATTTAAGATTATAAATTTAAAAAACTTATAGAAAATTTCATGAAACATTGAATTTTCATAATACTTTTCATGCTTGTTGAGGTGTTTCATAATTTTTACGAAAAGAAGATTAGGATATAAATTAGACTTTACTTTTCATTTTTTCCCTTATTAATTATTATCAAATTAATTTTTAGAATAATTCAAAGCAATTAAAGTTTCTTGAATTCATCCCATCGAAAATCTAAATGAAGAGTAAACATTGAAAAATATTTTAAAAATAGTCTTGAAAGTTGTACAATTAAGTTAATTTTAAAATATGAAAAATGTCTCAACTCTCAACAATTCAATTATTTGAAACAAAGGGAGTAGTATTGTTTTTTTAGCTGATGTTCGGAACTTGTATTGGAGCCCAATCCATTTTATATCTCGAATTCAAATTCAAAACTTCAGGCCAAGAATGAAATAGGCGTCCTAAGTATTTCATAGGCATAATACATAAAAATGACCGTAATTTGATTTTAGCGGACAACGACGACTTCTAACGTTGAGTGAGCACAAGTAAGATACATAAATTTATATAAAAATTGAACAAGTAGACACACATGTCTTGCATGACATAATACACGTACGATACAAAATTGTCATATAATATCCATTTACTCTTTTTTATACAAGTGCGCACTTGTTGTAAAATCAAGATTATAAGAAGAAGATAA</genome_strand>
        <mrna_strand>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557686" ref_strand="+" ref_description="SGN-E557686 [16523]">
      <seq>gttaaataaatgtcctcattcttcttatgatcaagtgcatgaagttatcaagaaagagcttggaggtgcacctgatgaaatctttgatgaatttgatcctgtaccaatagcaagtgcttctcttgctcaagtccatgttgctcgaatgcatgatgggcaaaaagttgctgtcaaggttcagcacgcacatatgacagatactgctgcagcagattatgcaacggtggagttgatagtgaacacattgcatcaattttttccttcctttgattacaggtggttggttgctgaagttcgtgaaagtttacctaaggaactagattttttggttgaggccaaaaacagtgtaagatgtatggataactttcggaagctgtctcctcgtattgcagactacgtttatgccccaagggtatactggaatttaagcacttcaaggctgttaaccatggaatatatggaggctgcacaagtaaaatgacttgaagagcattccaaagacttggaattcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116878" stop="110243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116578" g_stop="116500" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116499" i_stop="116359" i_length="141">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116358" g_stop="116263" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="175" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116262" i_stop="116183" i_length="80">
            <donor d_prob="0.953" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116182" g_stop="116082" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="276" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116081" i_stop="112311" i_length="3771">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112310" g_stop="112274" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="313" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112273" i_stop="110743" i_length="1531">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110742" g_stop="110543" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="515" r_length="202" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-E557686" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116578" e_stop="116500"/>
          <exon e_start="116358" e_stop="116263"/>
          <exon e_start="116182" e_stop="116082"/>
          <exon e_start="112310" e_stop="112274"/>
          <exon e_start="110742" e_stop="110543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAATAGATGTCCTCATTCTTCTTATGATCAAGTGCATGAAGTTGTGAAGAAAGAGCTTGGAGGTGCACCTGATGAAGTATGTCTTAATTTATTGGATTCTCCTCAAAAGCAATGATTTGGTTTAACATAAAGTCAATTTGATGAATATATGGCTTATATATCCTTGGACTTAGTTGCATTGTTGCGCGATCAACTGAATTAGAACTTTTGTCTACAGATCTTTGATGAATTTGATCCGATACCAATAGCAAGTGCTTCTCTTGCTCAAGTCCACGTTGCTCGAACGCGTGATGGGCAAAAAGTTGCTGTCAAGGTCCTAAATGTTGATATTGTTATAAATTGGTAGTGGAGAATTTTCCAAAACTTATAGCACTCTTATTTTGCTAATTGCAGGTTCAGCACACACATATGACAGATACTGCTGCAGCAGATTATGCAACTGTGGAGTTGATAGTGAACACATTGCATCGATTTTTTCCTTCCTTTGATTACAGGTTAGAAATATTCTCCTTTTCACCAAGTTCGATAAACTTCTAAAAAGTTTTTCCAGAGAGAGTATTTCTTTTGTAACTTGAAATTCTAGAAACAGTGAGGGATGGTTCAAAACTCGGTGGATAATGTTCCCTATAATTACTTTTCCCCAAGAGAGTATTATGAACTTAGCATCATGTACATCAATCACTCGATAGCAATCTACTACTCAATCCCAAATTAGTTGTGGTCTGTCATCTGAATCCTTTCATATGTATTCTACTTTATTAGGTCCATCTCACCAATATTTTTAAAAAAGGGTAGTGTTTTCGTCTCAAACTTTTCTCTATATGGACATGCAGGTCTCTCTTTAGAATAAAGTCTCTTGAGAAATACTTGACCTAATGTAACTGTAACAACAACAACTAGCCACTCTTTATTTGCAATACGGATCCTTTGTTCTGTTATGTTGTATGGTTTGCTAAGTCCGCATCATTTTGAGAGGCTTAAGGTCTGTTAGAAGATGTTTTCTTTGTGATTTTAGATTCACTGTGTCCCTTCTAACGCCTTCAACTACGTAGTATATGGTTTTCAGATGTCTTCTCTCATTTAATCTTTGATGCATGCTAGTTCCACCCTCTATAAGATGCAATCTAGTTGTACATTCATCCTAACCTGTGCATTTATGTGACGTTTATCTTGTTAATACGTTACGGCCTTATAGGCCTAACATTCGCACCTCAAAACAACATTTTTGGCCTTAATACTGATTTGTTGACCTGCCTTTCACTTAGTTAGGTGTCTGTATATCGCATTGCATTTCCATATCACATTACTGCTGTCGCTCTTATTTCACTTGTTACATTGTCATATCATGCCATGAATTGTCTACATATAGGCACCACAGTCCCATTATATCTCTTTTCGTCTTCATTCGTCTTAAGGAGCTAAATTCACCAAATATATTATGCCTTTCAGCTCCTCCATTTCAACTTATCTTTAGTTCGTATTACTTTTTTATATCATGTCATTTTCTTGAAAATTCAAACATAGATTCAATATTGTCTTTATTTAGGTACCATAATCCTAGTAAGACTCACTTTATGTTCATCTTCCTATTATCTAAGTTTATCATTACGTATTTTTTCCTATGAATACTTTTACTTTTTACTAGGGGTGTCAATTGTCAAATGGGGGGGTTGGGTTGAAATTGGAGATATTAAAATGGGTTGAAATAGAATTCGGGTTGAGTCATGACCGATCCAAGTTTACTTTGGGCTTAAAATCGAGTTGAGTCGTGACCTACCCAATTTGACCCGCTTAATTTTAACATATATTTAACTTTTAGAACCAAATTTCAACTTAAGAAGATAAAAAAAAAGGTTACAAATGGACAAATAAATTTTTCCCTTCTTAATGTGCATGTCATTGTTGTCGCGCCTCGAGCTACCCATGAGACGCGGACACGGGACCTAGGACCATAAGTGATCCCAAGCTAACCCTGCTTGCATGATCATGAACATACTAAAGATAATAAACTGATACGGAAGTTAAACCATAATTAAAATGAAAAATATGGGGAATACCCGTATACTATAACTGAGATATTTGAAAAGCTGATGAGTTTAATATAAAGAAAATATTAACTTAATACTAAGCTGAAACTAGCTATGTCTGAAATAAGTCTCTAACTGACTAGAAATGATGGGACAAGCCCCAACTAAGTCTAGAAAAAGTGAAACTACAAGACTGAAATGAACTCATGAATCTTGTCCTCGGAGAATGAGGATTCACCACTGATTCTGCTGAACTGGAGATCAAGAATCGATCTAAGCGTGACCTGGATGCTGAAAACCTGAACCTACATCACGAGAAGATGTAGTGCACGTATGCGTTAGTACTCGGAAGGTACTGAGCATGTAGGATAGAATAAAGCTGAAATAAAACATAACTGAACAAGCACAAAAGCAACTATAATATTCTGAACGTTACATACTGAATTTTGAGCTAACTGGATGTAATGACCAAATTTATGACATGCTGAGACTGAATACTAACTGGACTGTAAATATGGTCAATGCAATAGAGCCTGACTGAACTGTGGGAGTTACTAATAACTGATAATAAAACCACATGAGCTAAATGTGTAGTTCAATGTATACGCCCCATCGAGAGGACCCAATATGCCCTGCCAGAGGTATAGGCATGTTGACGTGATCACTAAACTGATGCCCACAGAGGGGACTTACAATCTACTTGGCTAGTAGTTCTGGGAGTATTTGGGTACGCTAAACCCTAGTCCAACTCAGTATTATGCTACTCCCAATGAATTAAGTGATTAACATATTGTGATTGAATTTATGTAATACTGGATAGCTCAAAACTGAACATGCAACAATTAATCTAATAATAATACATTAATAACTGAGTCATGTATAACTGAAGTACCGAAATATCTGACCTAGCATGTGTAGTTCAACAATTAAAGAAATAGATAGCTAGGTTCTGAAATTCATGCGATAGCCTGAGTAATAACATGGTAATCTGATTTGGAACATATAACTAACTTATTCATGATATTCTGTTGAAGTTCTAGAAACCTTAGGGGAATCAAAAATTTGATTGAAAACTAGGGACCCAATGAGTGAAAGGAACCCACTAGTGAAATACCACAAACCTGGTGATGAAATCCACGGAGAAATCTTTTAATTTCAGGGCTGCAACCGATGGAACCTTGATGCGTTCTTGAATTAGGGTTCTTGACCTTTTTCTCCTTTCTTGCTTCTAATTTTCTAAGTTTTAATTAATGATTTGACTTAGGTAAGTTTTAATTATGTTTCTAGGCTTAAACTGAATTAAACCTCATAATTTAGGGTCTAAACGATGTAGCTTAGGGGTTAAACGAAATAGGAAAAGACCCCTAAATTAACTGCGTCGGAGTGATCGACGGACCTGGTCCACGGACCGTGGTCCTAAATACGGTCCGTAGGTCCTGGCCGTCGTCTTGGACCAAGATTCGACGGACCTGGTCCATGGAGCGTTGTCCTATCTACTGTTCGTCCTGTTCCTTCGTCGTTTGGTTCAGAGAGTGGGTTTATGGACCATGATCAACGGACCGTGGTCCCACCTACGGTCCGTCTTGTTCCTTCGTCGTTTGGTTCAGAGAATGGGTTTATGGACCATGATCGACGGACTTGGTCCACGGACCGTGGTCCTACCTACGATCCGTATGTCCTGGTTGTCGTTTGGGATCTTTGAGTTTTCTGTGGACCAAGATCGACGGACCGTGGTCTTCACTACGATCCGTAGATGGCACCTGCACTTCTGGAAAATCTGAATTTTGGTTTATCTAGGGTATGGGTTGTTACAATTGTCTTCCACGGGCTACAGGCTATATATGTTAGCTTCCAAGTCTAGGTCCACCAAATTGTCAGTTGCATATTACTTTTCTGTTTTTCCACTCTAGTTTCTCAATTCACATGATCACATCGAGGATATGCAACGAGCCAATGTTCCAATACCAATCTGAATTTGAGTCATTTGTGTGTGTGTGCATGTGTGTATTGTGTAAACCAATATCTACCATCTTCTGTAGATATACAATACTGTGACATTTTTCCTTTAATTGTATATAGAAATATAGTATATTGCATTTATCAGATTTGTGCTTCAAAGTAAAAACTAAACCTTTAATTCTAAATGGGTTCAGGAATACTCATGATGCAATGTCTAGTTCCTATTTAATTTACTCTGGTCTAGCTTTGGTTTCTGATCCAACCTTTTGAAGAATGCAGGTGGTTGATTGCTGAAGTTCGTGAAAGTATACCTAAGGTAGCTACTGAAACTCAGTCATATTGTCCTAGTATCAATTTTTGACTGCTCTCCATTTCACTTATCCATGATGGGTGCTCAATTCTGTGAGCACTCCATGTTTCTACGACAGACTTTTTATTAAGTTTCCAACTTTTCTTGTGTCTTCTAGCTCCTTTGATCTCGATGTCGTCTAAACTTGCATCTTGAGAAAGCATTGAGAACCCTTGTCCCCATGTGCTGGAATTTTTTTGTTTCTTGAACATTTTGGTGCGGTCATTAATACCTATATACATATGATTGTTCCTTTTCAAAGTCATATATTTGTGGGAGACTTTTATATTTTTGTACAGATTGTACACGGGATTTCCCTTCTCCTGTACATACGGAGGAAGTATTCTCCTAGCTGGTTCTTGTTTCAGTGTTTAAAATTTCTCCACATTGAAAAGAAAATTTTCTTTGGTAGGTCCCCCTTAAAGTAAATTAGAGACACTTGAATAGAGTTTTGAAAACTTTTTTTTGGAAAAAAGTTTGTGGATGCAGCGGATGTGTTTTGATATCTATAGCTTCCTTGAAGATTTGTGATTTTTTTGTCCGCGAGAGTCTTTTAAAAAGATTTTCGAGGAAATTGTCAAAGCATAACTACTTATTTTTCATAAGCAAAAGATAACTCTCTCAAATCACAAATAAATTATACAAAACAGTTTGTTAGAGCTTTTTGCAAAATAAGCTTCTGTAAACTTATTCAATGTACTTCTCTAATATATGTCCTAAAAACTTTAACTATCAGTTGAAATGCTTAGAGTTTTAACATTCTGAAAGTAGGCATAATCCTTGAAATTACCAGATGCATGACAATCTTATGCAAAACATATTAGTAGTTAATAACGATTAAAATTTTGTAAGCGGAGAATGCGAGTCAATTTTGTCTGCAAATATGGTTTTTTAAATATCACTGTGTTTCTTTAAGAGATTACAGATTAAATTAATCGAAATTGTATTTCACTTATTCCCTGAAAGTTGTCAGAGAACATCCATTTTCATGTTTTAATGTTATAAATATATGAGATTTCATTCTCATCTTAAGAGGTCTTGAACTTTCATAGACCAAGCCGATGCTGTACTTTTCTTTCTACCACCTGCTTGCACAAAAGTTAATTTAGCATGTAATCATGGAATAGTTTACCATTCATAGATGCAAGGAAAGCTTGCAACATGTAGAATATGTTGTGATGGTATATGAACATAGGACACTTCTTTAGTCTGTTTGGTGATTGCAGATTATATCTACAAGTGGCAGAAACCATCTTGTTTTCTGCCACTAATTTCTCTTAAGCTTGCTCTTTTAATTTTCTTATACTTATAGTCAATAATCTTCTTTATACATTATTAAGAAATGTTCAAGATTTGTTTCCACTTTCAAGGTACTGCTGTTCATTAATTTCTGTATTTGGGGGCATTATTTTCTTTTATTGTGATATTTATGCTTGTCATACATTTTATTTTCACTATTGACATGACAAAATTTGATAAGTTATATGATGTCTATCAGGAACTAGATTTCTTGGTTGAGGCCAAAAACAGCATAAAATGTATGGATAACTTTCGGAAGCTGTCTCCTCATATTGCAGACTACGTTTATGCACCAAAGGTGTATTGGAATTTAAGCACTTCAAAGCTGTTAACCATGGAATATATGGAGGCTGCACAAGT-AAATGACTTGAAGAGCATT-CAAAGGCTTGGAATTCAGCC</genome_strand>
        <mrna_strand>GTTAAATAAATGTCCTCATTCTTCTTATGATCAAGTGCATGAAGTTATCAAGAAAGAGCTTGGAGGTGCACCTGATGAA.............................................................................................................................................ATCTTTGATGAATTTGATCCTGTACCAATAGCAAGTGCTTCTCTTGCTCAAGTCCATGTTGCTCGAATGCATGATGGGCAAAAAGTTGCTGTCAAG................................................................................GTTCAGCACGCACATATGACAGATACTGCTGCAGCAGATTATGCAACGGTGGAGTTGATAGTGAACACATTGCATCAATTTTTTCCTTCCTTTGATTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGGTTGCTGAAGTTCGTGAAAGTTTACCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGATTTTTTGGTTGAGGCCAAAAACAGTGTAAGATGTATGGATAACTTTCGGAAGCTGTCTCCTCGTATTGCAGACTACGTTTATGCCCCAAGGGTATACTGGAATTTAAGCACTTCAAGGCTGTTAACCATGGAATATATGGAGGCTGCACAAGTAAAATGACTTGAAGAGCATTCCAAAGACTTGGAATTCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>89</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6745" PGL_stop="3802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6745" e_stop="6330"/>
            <exon e_start="5965" e_stop="5769"/>
            <exon e_start="3879" e_stop="3802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6745" e_stop="6330" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.930">
            <gDNA_intron_boundary i_start="6329" i_stop="5966" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5965" e_stop="5769" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.920">
            <gDNA_intron_boundary i_start="5768" i_stop="3880" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="3879" e_stop="3802" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6745" stop="6330"/>
              <exon start="5965" stop="5769"/>
              <exon start="3879" stop="3802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATATAAAAGAGTACTACTCAACGCATAACGAAAAAGTGTAAATTTGTTAACACGACGATCGGATCCTGCCTGAGCAAAAACGAAATCGTTTTCCGTTAGGGTGACAATGTCGAAACAAACGTACAAAGTCGGATTTTTTTTCCGGCGGCAGTTCACCATGGCTGCCGCGGAAGCTCCGGCGGACATTAAGAGCCTATTTAAACGTTATTCCGACGACAGCGGAGTTATGAGCGTCCAGAATCTTCATAGTTTCTTAATTGAGATCCAGAAGGAGAAAAATGTTAGCTTAGAGAACGCAGAAGCCATTATCAATAATCACGGCGGCGACTCCAAGCAGAAAGGCCTCCAGCTCGATGGCTTCTTCAAGTTTCTCTTTTCTGATGTTAATCCTCCTCTCGATCCTAAACTTGGG : ATTCACCATGATATGACTGCACCTCTGTCTCATTACTACATATACACAGGCCATAATTCATATTTAACTGGGAATCAACTGAGTAGTGATTGCAGTGATGTTCCCATAATACAAGCTCTTCAGAGAAGTGTTAGAGTAATTGAATTAGATATTTGGCCAAATTCAGACAAAGATGATATAGAAGTTCTACATGGAAG : GACACTGACTGCTCCAGTGACGCTAATCAAATGTTTGAGGTCTATCAAGGAGCATGCCTTTTGTGCATCGGAGTATCC</gDNA_template>
            <first_frame> S  N  I  K  E  Y  Y  S  T  H  N  E  K  V  *  I  C  *  H  D  D  R  I  L  P  E  Q  K  R  N  R  F  P  L  G  *  Q  C  R  N  K  R  T  K  S  D  F  F  S  G  G  S  S  P  W  L  P  R  K  L  R  R  T  L  R  A  Y  L  N  V  I  P  T  T  A  E  L  *  A  S  R  I  F  I  V  S  *  L  R  S  R  R  R  K  M  L  A  *  R  T  Q  K  P  L  S  I  I  T  A  A  T  P  S  R  K  A  S  S  S  M  A  S  S  S  F  S  F  L  M  L  I  L  L  S  I  L  N  L  G :   F  T  M  I  *  L  H  L  C  L  I  T  T  Y  T  Q  A  I  I  H  I  *  L  G  I  N  *  V  V  I  A  V  M  F  P  *  Y  K  L  F  R  E  V  L  E  *  L  N  *  I  F  G  Q  I  Q  T  K  M  I  *  K  F  Y  M  E   : G  H  *  L  L  Q  *  R  *  S  N  V  *  G  L  S  R  S  M  P  F  V  H  R  S  I  </first_frame>
            <second_frame>  V  I  *  K  S  T  T  Q  R  I  T  K  K  C  K  F  V  N  T  T  I  G  S  C  L  S  K  N  E  I  V  F  R  *  G  D  N  V  E  T  N  V  Q  S  R  I  F  F  P  A  A  V  H  H  G  C  R  G  S  S  G  G  H  *  E  P  I  *  T  L  F  R  R  Q  R  S  Y  E  R  P  E  S  S  *  F  L  N  *  D  P  E  G  E  K  C  *  L  R  E  R  R  S  H  Y  Q  *  S  R  R  R  L  Q  A  E  R  P  P  A  R  W  L  L  Q  V  S  L  F  *  C  *  S  S  S  R  S  *  T  W   : D  S  P  *  Y  D  C  T  S  V  S  L  L  H  I  H  R  P  *  F  I  F  N  W  E  S  T  E  *  *  L  Q  *  C  S  H  N  T  S  S  S  E  K  C  *  S  N  *  I  R  Y  L  A  K  F  R  Q  R  *  Y  R  S  S  T  W  K  :  D  T  D  C  S  S  D  A  N  Q  M  F  E  V  Y  Q  G  A  C  L  L  C  I  G  V  S </second_frame>
            <third_frame>   *  Y  K  R  V  L  L  N  A  *  R  K  S  V  N  L  L  T  R  R  S  D  P  A  *  A  K  T  K  S  F  S  V  R  V  T  M  S  K  Q  T  Y  K  V  G  F  F  F  R  R  Q  F  T  M  A  A  A  E  A  P  A  D  I  K  S  L  F  K  R  Y  S  D  D  S  G  V  M  S  V  Q  N  L  H  S  F  L  I  E  I  Q  K  E  K  N  V  S  L  E  N  A  E  A  I  I  N  N  H  G  G  D  S  K  Q  K  G  L  Q  L  D  G  F  F  K  F  L  F  S  D  V  N  P  P  L  D  P  K  L  G  :  I  H  H  D  M  T  A  P  L  S  H  Y  Y  I  Y  T  G  H  N  S  Y  L  T  G  N  Q  L  S  S  D  C  S  D  V  P  I  I  Q  A  L  Q  R  S  V  R  V  I  E  L  D  I  W  P  N  S  D  K  D  D  I  E  V  L  H  G  R :   T  L  T  A  P  V  T  L  I  K  C  L  R  S  I  K  E  H  A  F  C  A  S  E  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6668" stop="6330"/>
                    <exon start="5965" stop="5769"/>
                    <exon start="3879" stop="3804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKTKSFSVRVTMSKQTYKVGFFFRRQFTMAAAEAPADIKSLFKRYSDDSGVMSVQNLHSFLIEIQKEKNVSLENAEAIINNHGGDSKQKGLQLDGFFKFLFSDVNPPLDPKLGIHHDMTAPLSHYYIYTGHNSYLTGNQLSSDCSDVPIIQALQRSVRVIELDIWPNSDKDDIEVLHGRTLTAPVTLIKCLRSIKEHAFCASEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10744" PGL_stop="8919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10744" e_stop="10435"/>
            <exon e_start="10354" e_stop="10158"/>
            <exon e_start="9896" e_stop="9761"/>
            <exon e_start="9674" e_stop="9435"/>
            <exon e_start="9347" e_stop="9118"/>
            <exon e_start="9022" e_stop="8919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.576" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10744" e_stop="10435" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10434" i_stop="10355" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10354" e_stop="10158" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10157" i_stop="9897" i_length="261"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9896" e_stop="9761" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.576">
            <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9674" e_stop="9435" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9347" e_stop="9118" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="9117" i_stop="9023" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="9022" e_stop="8919" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10744" stop="10562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10739" stop="10435"/>
              <exon start="10354" stop="10158"/>
              <exon start="9896" stop="9761"/>
              <exon start="9674" stop="9546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10718" stop="10435"/>
              <exon start="10354" stop="10158"/>
              <exon start="9896" stop="9788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10179" stop="10158"/>
              <exon start="9896" stop="9761"/>
              <exon start="9674" stop="9435"/>
              <exon start="9347" stop="9118"/>
              <exon start="9022" stop="8919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9846" stop="9761"/>
              <exon start="9674" stop="9435"/>
              <exon start="9347" stop="9118"/>
              <exon start="9022" stop="9006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAG : GTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAG : GACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAG : ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGG : AGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAG : GTTCACACAGAAAAATATTCTAAGGGTGTACCCCAAGGGAACAAGAGTGACCTCCTCAAATTTCAAGCCTATGACTGGCTGGATGCATGGAGCTCAGATGGTAG</gDNA_template>
            <first_frame> L  L  Q  N  V  W  V  F  Q  P  *  I  *  D  Q  G  E  G  A  T  A  G  C  E  E  C  V  F  P  V  H  R  *  S  *  P  D  E  C  G  S  T  F  S  V  S  G  G  G  T  R  R  R  R  M  H  Y  *  G  C  G  A  N  Y  T  E  C  C  *  P  E  A  P  S  H  Q  T  P  *  P  F  T  *  T  R  *  F  L  F  L  S  F  S  G  *  S  Q  W  S  N  Q  I  S   : G  A  P  *  H  D  C  S  I  A  T  L  F  H  L  Y  R  S  Q  F  L  P  N  W  K  S  T  Q  Q  R  L  *  *  N  S  Y  S  *  G  S  R  K  R  C  P  R  N  R  T  *  F  M  A  K  L  R  E  R  *  Y  S  C  S  S  W  K  :  D  P  D  Y  T  S  S  T  S  *  M  L  K  G  H  *  R  P  R  F  F  *  I  P  L  S  C  H  N  H  I  G  R  P  P  D  T  R  S  S  S  *  S  C  R   : D  G  Y  P  N  L  W  R  N  V  I  L  S  S  I  G  M  L  R  *  I  S  F  T  *  R  A  *  E  S  H  Y  S  F  Y  K  T  T  Q  R  V  P  *  V  K  E  S  E  R  Y  I  S  S  G  K  R  F  I  *  R  G  P  F  E  E  G  E  I  R  N  W  C  R  G  S  *  H  *  *  K   : E  *  Q  *  S  R  *  *  R  R  *  Y  L  H  L  Q  R  S  A  I  I  P  T  R  S  T  *  V  Q  E  S  D  S  S  S  R  W  E  G  K  T  W  F  E  T  C  T  K  R  G  K  *  *  S  Q  S  T  *  F  E  *  T  R  S  C  K  S  C  R  I  L  W  N  *  F  G  *  :  V  H  T  E  K  Y  S  K  G  V  P  Q  G  N  K  S  D  L  L  K  F  Q  A  Y  D  W  L  D  A  W  S  S  D  G   </first_frame>
            <second_frame>  Y  Y  R  M  F  G  C  F  N  R  K  F  K  I  R  E  R  E  P  P  P  D  V  R  N  A  F  F  R  Y  T  G  K  A  N  Q  M  N  A  D  Q  L  F  R  Y  L  V  E  V  Q  G  E  E  E  C  T  I  K  D  A  E  Q  I  I  Q  N  V  A  S  R  R  H  H  L  I  R  R  L  N  H  S  L  E  L  D  D  F  F  F  Y  L  F  Q  D  D  L  N  G  A  I  K  S  Q  :  V  H  H  D  M  T  A  P  L  Q  H  Y  F  I  Y  T  G  H  N  S  Y  L  T  G  N  Q  L  S  S  D  C  S  E  I  P  I  V  K  A  L  E  R  G  V  R  G  I  E  L  D  L  W  P  N  S  G  K  D  N  I  H  V  L  H  G  R :   T  L  T  T  P  V  P  L  L  K  C  L  K  A  I  R  D  H  A  F  F  K  S  P  Y  P  V  I  I  T  L  E  D  H  L  T  P  D  L  Q  A  K  V  A  E  :  M  V  I  Q  I  F  G  E  M  L  Y  Y  P  Q  S  E  C  L  D  E  F  P  S  P  E  E  L  K  N  R  I  I  L  S  T  K  P  P  K  E  Y  L  E  S  K  N  Q  R  D  T  S  P  V  G  K  D  S  F  R  E  D  L  L  K  K  E  K  S  E  I  G  A  E  D  H  D  T  D  E  R  :  S  D  S  D  Q  D  D  E  D  G  D  T  S  T  S  N  D  Q  Q  S  S  Q  P  E  A  P  K  Y  K  S  L  I  A  V  H  A  G  K  A  K  H  G  L  K  R  A  L  R  E  E  S  N  K  V  S  R  L  S  L  S  E  Q  E  V  V  R  A  A  E  Y  Y  G  T  D  L  V  R :   F  T  Q  K  N  I  L  R  V  Y  P  K  G  T  R  V  T  S  S  N  F  K  P  M  T  G  W  M  H  G  A  Q  M  V  </second_frame>
            <third_frame>   I  T  E  C  L  G  V  S  T  V  N  L  R  S  G  R  G  S  H  R  R  M  *  G  M  R  F  S  G  T  P  V  K  L  T  R  *  M  R  I  N  F  F  G  I  W  W  R  Y  K  E  K  K  N  A  L  L  R  M  R  S  K  L  Y  R  M  L  L  A  G  G  T  I  S  S  D  A  L  T  I  H  L  N  S  M  I  S  F  F  I  F  F  R  M  I  S  M  E  Q  S  N  L  R :   C  T  M  T  *  L  L  H  C  N  I  I  S  S  I  Q  V  T  I  P  T  *  L  E  I  N  S  A  A  I  V  V  K  F  L  *  L  R  L  *  K  E  V  S  A  E  *  N  L  I  Y  G  Q  T  Q  G  K  I  I  F  M  F  F  M  E   : G  P  *  L  H  Q  F  H  F  L  N  A  *  R  P  L  E  T  T  L  F  L  N  P  L  I  L  S  *  S  H  W  K  T  T  *  H  Q  I  F  K  L  K  L  Q  R :   W  L  S  K  S  L  E  K  C  Y  I  I  L  N  R  N  A  *  M  N  F  L  H  L  K  S  L  R  I  A  L  F  F  L  Q  N  H  P  K  S  T  L  S  Q  R  I  R  E  I  H  L  Q  W  E  K  I  H  L  E  R  T  F  *  R  R  R  N  Q  K  L  V  P  R  I  M  T  L  M  K  G :   V  T  V  I  K  M  M  K  T  V  I  P  P  P  P  T  I  S  N  H  P  N  Q  K  H  L  S  T  R  V  *  *  Q  F  T  L  G  R  Q  N  M  V  *  N  V  H  *  E  R  K  V  I  K  S  V  D  L  V  *  V  N  K  K  L  *  E  L  Q  N  I  M  E  L  I  W  L   : G  S  H  R  K  I  F  *  G  C  T  P  R  E  Q  E  *  P  P  Q  I  S  S  L  *  L  A  G  C  M  E  L  R  W  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10743" stop="10435"/>
                    <exon start="10354" stop="10158"/>
                    <exon start="9896" stop="9761"/>
                    <exon start="9674" stop="9435"/>
                    <exon start="9347" stop="9118"/>
                    <exon start="9022" stop="8920"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYRMFGCFNRKFKIREREPPPDVRNAFFRYTGKANQMNADQLFRYLVEVQGEEECTIKDAEQIIQNVASRRHHLIRRLNHSLELDDFFFYLFQDDLNGAIKSQVHHDMTAPLQHYFIYTGHNSYLTGNQLSSDCSEIPIVKALERGVRGIELDLWPNSGKDNIHVLHGRTLTTPVPLLKCLKAIRDHAFFKSPYPVIITLEDHLTPDLQAKVAEMVIQIFGEMLYYPQSECLDEFPSPEELKNRIILSTKPPKEYLESKNQRDTSPVGKDSFREDLLKKEKSEIGAEDHDTDERSDSDQDDEDGDTSTSNDQQSSQPEAPKYKSLIAVHAGKAKHGLKRALREESNKVSRLSLSEQEVVRAAEYYGTDLVRFTQKNILRVYPKGTRVTSSNFKPMTGWMHGAQMV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9904" e_stop="9761"/>
            <exon e_start="9674" e_stop="9435"/>
            <exon e_start="9347" e_stop="9118"/>
            <exon e_start="9022" e_stop="9006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.576" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="9904" e_stop="9761" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.576">
            <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9674" e_stop="9435" e_length="240"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9347" e_stop="9118" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="9117" i_stop="9023" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9022" e_stop="9006" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9904" stop="9761"/>
              <exon start="9674" stop="9435"/>
              <exon start="9347" stop="9208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9846" stop="9761"/>
              <exon start="9674" stop="9435"/>
              <exon start="9347" stop="9118"/>
              <exon start="9022" stop="9006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCAGGACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAG : ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGG : AGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAG : GTTCACACAGAAAAATA</gDNA_template>
            <first_frame> I  C  R  T  L  T  T  P  V  P  L  L  K  C  L  K  A  I  R  D  H  A  F  F  K  S  P  Y  P  V  I  I  T  L  E  D  H  L  T  P  D  L  Q  A  K  V  A  E  :  M  V  I  Q  I  F  G  E  M  L  Y  Y  P  Q  S  E  C  L  D  E  F  P  S  P  E  E  L  K  N  R  I  I  L  S  T  K  P  P  K  E  Y  L  E  S  K  N  Q  R  D  T  S  P  V  G  K  D  S  F  R  E  D  L  L  K  K  E  K  S  E  I  G  A  E  D  H  D  T  D  E  R  :  S  D  S  D  Q  D  D  E  D  G  D  T  S  T  S  N  D  Q  Q  S  S  Q  P  E  A  P  K  Y  K  S  L  I  A  V  H  A  G  K  A  K  H  G  L  K  R  A  L  R  E  E  S  N  K  V  S  R  L  S  L  S  E  Q  E  V  V  R  A  A  E  Y  Y  G  T  D  L  V  R :   F  T  Q  K  N  </first_frame>
            <second_frame>  F  A  G  P  *  L  H  Q  F  H  F  L  N  A  *  R  P  L  E  T  T  L  F  L  N  P  L  I  L  S  *  S  H  W  K  T  T  *  H  Q  I  F  K  L  K  L  Q  R :   W  L  S  K  S  L  E  K  C  Y  I  I  L  N  R  N  A  *  M  N  F  L  H  L  K  S  L  R  I  A  L  F  F  L  Q  N  H  P  K  S  T  L  S  Q  R  I  R  E  I  H  L  Q  W  E  K  I  H  L  E  R  T  F  *  R  R  R  N  Q  K  L  V  P  R  I  M  T  L  M  K  G :   V  T  V  I  K  M  M  K  T  V  I  P  P  P  P  T  I  S  N  H  P  N  Q  K  H  L  S  T  R  V  *  *  Q  F  T  L  G  R  Q  N  M  V  *  N  V  H  *  E  R  K  V  I  K  S  V  D  L  V  *  V  N  K  K  L  *  E  L  Q  N  I  M  E  L  I  W  L   : G  S  H  R  K  I </second_frame>
            <third_frame>   L  Q  D  P  D  Y  T  S  S  T  S  *  M  L  K  G  H  *  R  P  R  F  F  *  I  P  L  S  C  H  N  H  I  G  R  P  P  D  T  R  S  S  S  *  S  C  R   : D  G  Y  P  N  L  W  R  N  V  I  L  S  S  I  G  M  L  R  *  I  S  F  T  *  R  A  *  E  S  H  Y  S  F  Y  K  T  T  Q  R  V  P  *  V  K  E  S  E  R  Y  I  S  S  G  K  R  F  I  *  R  G  P  F  E  E  G  E  I  R  N  W  C  R  G  S  *  H  *  *  K   : E  *  Q  *  S  R  *  *  R  R  *  Y  L  H  L  Q  R  S  A  I  I  P  T  R  S  T  *  V  Q  E  S  D  S  S  S  R  W  E  G  K  T  W  F  E  T  C  T  K  R  G  K  *  *  S  Q  S  T  *  F  E  *  T  R  S  C  K  S  C  R  I  L  W  N  *  F  G  *  :  V  H  T  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9904" stop="9761"/>
                    <exon start="9674" stop="9435"/>
                    <exon start="9347" stop="9118"/>
                    <exon start="9022" stop="9007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICRTLTTPVPLLKCLKAIRDHAFFKSPYPVIITLEDHLTPDLQAKVAEMVIQIFGEMLYYPQSECLDEFPSPEELKNRIILSTKPPKEYLESKNQRDTSPVGKDSFREDLLKKEKSEIGAEDHDTDERSDSDQDDEDGDTSTSNDQQSSQPEAPKYKSLIAVHAGKAKHGLKRALREESNKVSRLSLSEQEVVRAAEYYGTDLVRFTQKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20331" PGL_stop="24943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20331" e_stop="20453"/>
            <exon e_start="20534" e_stop="20587"/>
            <exon e_start="20684" e_stop="20759"/>
            <exon e_start="22730" e_stop="22777"/>
            <exon e_start="22878" e_stop="22901"/>
            <exon e_start="24063" e_stop="24245"/>
            <exon e_start="24372" e_stop="24447"/>
            <exon e_start="24545" e_stop="24943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20331" e_stop="20453" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20534" e_stop="20587" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20684" e_stop="20759" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.797" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22730" e_stop="22777" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22878" e_stop="22901" e_length="24"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24063" e_stop="24245" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.606">
            <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24372" e_stop="24447" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="24545" e_stop="24943" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20331" stop="20453"/>
              <exon start="20534" stop="20587"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20341" stop="20453"/>
              <exon start="20534" stop="20587"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20342" stop="20453"/>
              <exon start="20534" stop="20587"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20416" stop="20453"/>
              <exon start="20534" stop="20587"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22754" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCAGTTCCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG : AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG : GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG : GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG : AAAACTTCAGAGCTCTTTGCACAG : GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG : GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG : GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATCAGAATACATCAAATGCTTGAAAGTGCTTAACCTCACGCTAAAGCCAGGTTCATACACTGTCAAGAAATGTTCAATGGGACTTTCGCTGCTTGTAAAGTTAAAACAACCCTCGTGAAACAAGATCACAACTGCTGCGTAGAATAGACACAAGGATCATTTTATGAAAATTGTAATAAAACCTTTGCTTTTATATTTATTTTCGTAAAGGATTTTGAATGAATTCTCTGTTGTATGTACCATAG</gDNA_template>
            <first_frame> W  I  S  S  D  L  E  *  R  L  P  E  E  K  K  M  A  N  R  N  K  L  S  P  S  L  V  V  W  V  L  V  L  F  G  T  L  I  F  I  L  :  N  R  L  G  D  S  G  V  S  S  D  G  K  D  I  K  I  E  :  A  K  T  S  E  D  L  E  R  V  T  H  K  V  Y  F  D  V  E  I  N  G  K  P  T   : G  R  I  V  M  G  L  F  G  K  T  V  P  K  T  A   : E  N  F  R  A  L  C  T   : G  E  K  G  T  G  K  A  G  K  P  L  H  Y  K  G  S  S  F  H  R  I  I  P  S  F  M  I  Q  G  G  D  F  T  R  G  D  G  R  G  G  E  S  I  Y  G  E  S  F  P  D  E  N  F  D  L  K  H  T  E  P   : G  I  L  S  M  A  N  A  G  P  D  T  N  G  S  Q  F  F  I  T  T  V  T  T  S  W :   L  D  K  H  H  V  V  F  G  K  V  L  S  G  M  D  V  V  H  K  I  E  A  E  G  R  Q  S  G  T  P  K  S  K  V  R  I  T  N  S  G  D  L  P  Q  *  F  N  F  P  C  I  R  I  H  Q  M  L  E  S  A  *  P  H  A  K  A  R  F  I  H  C  Q  E  M  F  N  G  T  F  A  A  C  K  V  K  T  T  L  V  K  Q  D  H  N  C  C  V  E  *  T  Q  G  S  F  Y  E  N  C  N  K  T  F  A  F  I  F  I  F  V  K  D  F  E  *  I  L  C  C  M  Y  H   </first_frame>
            <second_frame>  G  S  V  P  T  *  S  E  D  F  R  R  K  R  K  W  R  T  E  T  N  Y  L  L  P  L  L  S  G  F  *  F  Y  S  E  P  *  F  S  F  * :   T  D  *  V  I  Q  E  S  P  Q  M  V  K  T  L  K  S  R :   Q  K  H  Q  R  I  W  S  G  *  R  I  K  Y  T  L  M  S  K  L  M  E  N  L  L  :  V  V  L  S  W  A  S  L  G  K  L  S  Q  R  Q  Q  :  K  T  S  E  L  F  A  Q  :  G  K  K  E  Q  G  K  L  A  S  L  S  I  T  K  V  A  V  S  T  G  S  Y  Q  A  S  *  S  R  E  V  T  S  P  V  V  M  G  E  V  E  S  Q  Y  M  V  K  A  F  Q  M  K  T  L  I  *  N  T  L  N  L  :  V  S  C  Q  W  Q  M  L  D  Q  T  P  M  D  L  N  S  L  S  Q  L  *  R  L  A   : G  W  T  N  I  M  L  F  S  A  R  C  C  L  G  W  M  L  S  T  K  L  K  L  K  A  D  K  V  E  P  R  K  A  K  L  E  *  Q  I  V  E  I  C  L  S  D  S  I  F  H  V  S  E  Y  I  K  C  L  K  V  L  N  L  T  L  K  P  G  S  Y  T  V  K  K  C  S  M  G  L  S  L  L  V  K  L  K  Q  P  S  *  N  K  I  T  T  A  A  *  N  R  H  K  D  H  F  M  K  I  V  I  K  P  L  L  L  Y  L  F  S  *  R  I  L  N  E  F  S  V  V  C  T  I  </second_frame>
            <third_frame>   D  Q  F  R  P  R  V  K  T  S  G  G  K  E  N  G  E  Q  K  Q  I  I  S  F  P  C  C  L  G  S  S  F  I  R  N  P  N  F  H  S   : E  P  I  R  *  F  R  S  L  L  R  W  *  R  H  *  N  R   : G  K  N  I  R  G  F  G  A  G  D  A  *  S  I  L  *  C  R  N  *  W  K  T  Y  W :   S  Y  C  H  G  P  L  W  E  N  C  P  K  D  S  R :   K  L  Q  S  S  L  H  R :   G  K  R  N  R  E  S  W  Q  A  S  P  L  Q  R  *  Q  F  P  Q  D  H  T  K  L  H  D  P  G  R  *  L  H  P  W  *  W  A  R  W  R  V  N  I  W  *  K  L  S  R  *  K  L  *  S  K  T  H  *  T  W :   Y  L  V  N  G  K  C  W  T  R  H  Q  W  I  S  I  L  Y  H  N  C  N  D  *  L  :  V  G  Q  T  S  C  C  F  R  Q  G  A  V  W  D  G  C  C  P  Q  N  *  S  *  R  Q  T  K  W  N  P  E  K  Q  S  *  N  N  K  *  W  R  S  A  S  V  I  Q  F  S  M  Y  Q  N  T  S  N  A  *  K  C  L  T  S  R  *  S  Q  V  H  T  L  S  R  N  V  Q  W  D  F  R  C  L  *  S  *  N  N  P  R  E  T  R  S  Q  L  L  R  R  I  D  T  R  I  I  L  *  K  L  *  *  N  L  C  F  Y  I  Y  F  R  K  G  F  *  M  N  S  L  L  Y  V  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20355" stop="20453"/>
                    <exon start="20534" stop="20587"/>
                    <exon start="20684" stop="20759"/>
                    <exon start="22730" stop="22777"/>
                    <exon start="22878" stop="22901"/>
                    <exon start="24063" stop="24245"/>
                    <exon start="24372" stop="24447"/>
                    <exon start="24545" stop="24683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLPEEKKMANRNKLSPSLVVWVLVLFGTLIFILNRLGDSGVSSDGKDIKIEAKTSEDLERVTHKVYFDVEINGKPTGRIVMGLFGKTVPKTAENFRALCTGEKGTGKAGKPLHYKGSSFHRIIPSFMIQGGDFTRGDGRGGESIYGESFPDENFDLKHTEPGILSMANAGPDTNGSQFFITTVTTSWLDKHHVVFGKVLSGMDVVHKIEAEGRQSGTPKSKVRITNSGDLPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20355" e_stop="20453"/>
            <exon e_start="20534" e_stop="20600"/>
            <exon e_start="20684" e_stop="20759"/>
            <exon e_start="22730" e_stop="22777"/>
            <exon e_start="22878" e_stop="22901"/>
            <exon e_start="24063" e_stop="24245"/>
            <exon e_start="24372" e_stop="24447"/>
            <exon e_start="24545" e_stop="24701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="0.960"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.836"/>
          <exon-intron don_prob="0.797" acc_prob="0.993" e_score="0.987"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="20355" e_stop="20453" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.836">
            <gDNA_exon_boundary e_start="20534" e_stop="20600" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20601" i_stop="20683" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="20684" e_stop="20759" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.797" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22730" e_stop="22777" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22878" e_stop="22901" e_length="24"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24063" e_stop="24245" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.606">
            <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24372" e_stop="24447" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="24545" e_stop="24701" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20355" stop="20453"/>
              <exon start="20534" stop="20600"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20355" stop="20453"/>
              <exon start="20534" stop="20600"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22754" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG : AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGG : GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG : GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG : AAAACTTCAGAGCTCTTTGCACAG : GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG : GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG : GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATC</gDNA_template>
            <first_frame> R  L  P  E  E  K  K  M  A  N  R  N  K  L  S  P  S  L  V  V  W  V  L  V  L  F  G  T  L  I  F  I  L  :  N  R  L  G  D  S  G  V  S  S  D  G  K  D  I  K  I  E  V  Q  F  W   : G  K  N  I  R  G  F  G  A  G  D  A  *  S  I  L  *  C  R  N  *  W  K  T  Y  W :   S  Y  C  H  G  P  L  W  E  N  C  P  K  D  S  R :   K  L  Q  S  S  L  H  R :   G  K  R  N  R  E  S  W  Q  A  S  P  L  Q  R  *  Q  F  P  Q  D  H  T  K  L  H  D  P  G  R  *  L  H  P  W  *  W  A  R  W  R  V  N  I  W  *  K  L  S  R  *  K  L  *  S  K  T  H  *  T  W :   Y  L  V  N  G  K  C  W  T  R  H  Q  W  I  S  I  L  Y  H  N  C  N  D  *  L  :  V  G  Q  T  S  C  C  F  R  Q  G  A  V  W  D  G  C  C  P  Q  N  *  S  *  R  Q  T  K  W  N  P  E  K  Q  S  *  N  N  K  *  W  R  S  A  S  V  I  Q  F  S  M  Y  </first_frame>
            <second_frame>  D  F  R  R  K  R  K  W  R  T  E  T  N  Y  L  L  P  L  L  S  G  F  *  F  Y  S  E  P  *  F  S  F  * :   T  D  *  V  I  Q  E  S  P  Q  M  V  K  T  L  K  S  R  F  N  F  G  :  A  K  T  S  E  D  L  E  R  V  T  H  K  V  Y  F  D  V  E  I  N  G  K  P  T   : G  R  I  V  M  G  L  F  G  K  T  V  P  K  T  A   : E  N  F  R  A  L  C  T   : G  E  K  G  T  G  K  A  G  K  P  L  H  Y  K  G  S  S  F  H  R  I  I  P  S  F  M  I  Q  G  G  D  F  T  R  G  D  G  R  G  G  E  S  I  Y  G  E  S  F  P  D  E  N  F  D  L  K  H  T  E  P   : G  I  L  S  M  A  N  A  G  P  D  T  N  G  S  Q  F  F  I  T  T  V  T  T  S  W :   L  D  K  H  H  V  V  F  G  K  V  L  S  G  M  D  V  V  H  K  I  E  A  E  G  R  Q  S  G  T  P  K  S  K  V  R  I  T  N  S  G  D  L  P  Q  *  F  N  F  P  C  I </second_frame>
            <third_frame>   T  S  G  G  K  E  N  G  E  Q  K  Q  I  I  S  F  P  C  C  L  G  S  S  F  I  R  N  P  N  F  H  S   : E  P  I  R  *  F  R  S  L  L  R  W  *  R  H  *  N  R  G  S  I  L  G :   Q  K  H  Q  R  I  W  S  G  *  R  I  K  Y  T  L  M  S  K  L  M  E  N  L  L  :  V  V  L  S  W  A  S  L  G  K  L  S  Q  R  Q  Q  :  K  T  S  E  L  F  A  Q  :  G  K  K  E  Q  G  K  L  A  S  L  S  I  T  K  V  A  V  S  T  G  S  Y  Q  A  S  *  S  R  E  V  T  S  P  V  V  M  G  E  V  E  S  Q  Y  M  V  K  A  F  Q  M  K  T  L  I  *  N  T  L  N  L  :  V  S  C  Q  W  Q  M  L  D  Q  T  P  M  D  L  N  S  L  S  Q  L  *  R  L  A   : G  W  T  N  I  M  L  F  S  A  R  C  C  L  G  W  M  L  S  T  K  L  K  L  K  A  D  K  V  E  P  R  K  A  K  L  E  *  Q  I  V  E  I  C  L  S  D  S  I  F  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20544" stop="20600"/>
                    <exon start="20684" stop="20759"/>
                    <exon start="22730" stop="22777"/>
                    <exon start="22878" stop="22901"/>
                    <exon start="24063" stop="24245"/>
                    <exon start="24372" stop="24447"/>
                    <exon start="24545" stop="24683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIQESPQMVKTLKSRFNFGAKTSEDLERVTHKVYFDVEINGKPTGRIVMGLFGKTVPKTAENFRALCTGEKGTGKAGKPLHYKGSSFHRIIPSFMIQGGDFTRGDGRGGESIYGESFPDENFDLKHTEPGILSMANAGPDTNGSQFFITTVTTSWLDKHHVVFGKVLSGMDVVHKIEAEGRQSGTPKSKVRITNSGDLPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25745" PGL_stop="24939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25745" e_stop="24939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25745" e_stop="24939" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25745" stop="25116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25584" stop="24975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25526" stop="24939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25526" stop="24941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25526" stop="24993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25526" stop="25031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25391" stop="24955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTAATTTCTTACATTTTGGCCAAACAAATGGTGTCGCGTGAATAAGCACTGCCAAGCCAAACCATGGTTAGTCATCTCTGTACAACCCCACCAAATGAGGAAAATATCTAATCTATGTATGTATGCACCTCACCTCCCCAGAGACTAGAGAGAAAGCGTCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTATG</gDNA_template>
            <first_frame> F  L  I  S  Y  I  L  A  K  Q  M  V  S  R  E  *  A  L  P  S  Q  T  M  V  S  H  L  C  T  T  P  P  N  E  E  N  I  *  S  M  Y  V  C  T  S  P  P  Q  R  L  E  R  K  R  L  C  V  F  L  S  C  T  F  M  I  E  S  T  L  G  A  W  K  T  P  L  S  A  T  V  K  P  *  P  N  L  N  P  S  P  L  T  T  A  A  A  L  V  T  S  V  Q  R  K  A  T  P  M  C  G  T  T  S  P  T  D  S  G  R  C  N  R  C  W  I  G  T  D  R  *  Y  S  K  S  T  K  I  I  S  R  E  R  L  T  I  W  C  G  M  *  A  *  F  R  S  L  M  A  T  F  L  K  *  F  L  S  I  L  I  F  L  P  I  F  Q  P  C  F  V  K  E  T  T  S  L  E  T  T  P  T  T  T  D  A  F  L  F  S  S  L  V  Y  N  I  L  S  N  N  A  L  R  G  A  N  C  F  T  T  E  L  M  L  L  *  N  R  V  L  L  I  Y  S  N  L  S  L  T  F  W  V  I  A  C  V  C  I  S  *  A  C  L  Y  *  I  T  E  N  K  L  E  I  S  T  T  Y  L  S  P  M </first_frame>
            <second_frame>  F  *  F  L  T  F  W  P  N  K  W  C  R  V  N  K  H  C  Q  A  K  P  W  L  V  I  S  V  Q  P  H  Q  M  R  K  I  S  N  L  C  M  Y  A  P  H  L  P  R  D  *  R  E  S  V  C  A  C  F  S  H  V  R  L  *  L  N  R  H  *  E  H  G  R  H  L  *  A  P  P  S  N  P  S  Q  T  S  I  P  H  H  *  R  P  P  P  P  S  *  P  Q  Y  R  G  R  Q  L  R  C  V  E  Q  L  L  Q  Q  I  P  A  G  A  I  G  V  G  S  E  Q  I  V  D  T  A  S  Q  R  K  S  S  V  E  N  D  *  Q  Y  G  A  E  C  E  P  D  S  G  A  *  W  Q  H  F  *  S  S  F  S  L  F  *  Y  F  Y  Q  F  F  N  H  V  S  S  R  K  R  L  H  W  R  R  H  Q  Q  P  L  M  L  F  S  S  P  V  *  F  I  T  S  S  V  I  M  P  *  E  V  Q  I  V  L  Q  L  S  *  C  C  C  E  I  E  Y  S  *  Y  T  R  I  Y  L  *  L  F  G  S  *  R  V  C  V  F  H  K  H  V  C  I  K  L  L  R  T  N  W  K  F  Q  Q  R  I  F  L  L   </second_frame>
            <third_frame>   S  N  F  L  H  F  G  Q  T  N  G  V  A  *  I  S  T  A  K  P  N  H  G  *  S  S  L  Y  N  P  T  K  *  G  K  Y  L  I  Y  V  C  M  H  L  T  S  P  E  T  R  E  K  A  S  V  R  V  S  L  M  Y  V  Y  D  *  I  D  I  R  S  M  E  D  T  F  K  R  H  R  Q  T  L  A  K  P  Q  S  L  T  T  D  D  R  R  R  P  R  D  L  S  T  E  E  G  N  S  D  V  W  N  N  F  S  N  R  F  R  Q  V  Q  S  V  L  D  R  N  R  S  L  I  Q  Q  V  N  E  N  H  Q  S  R  T  T  D  N  M  V  R  N  V  S  L  I  Q  E  L  N  G  N  I  S  K  V  V  S  L  Y  S  D  I  S  T  N  F  S  T  M  F  R  Q  G  N  D  F  I  G  D  D  T  N  N  H  *  C  F  S  L  L  Q  S  S  L  *  H  P  Q  *  *  C  P  K  R  C  K  L  F  Y  N  *  V  D  V  A  V  K  S  S  T  L  N  I  L  E  F  I  F  N  F  L  G  H  S  V  C  V  Y  F  I  S  M  F  V  L  N  Y  *  E  Q  I  G  N  F  N  N  V  S  F  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25548" stop="25168"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDIRSMEDTFKRHRQTLAKPQSLTTDDRRRPRDLSTEEGNSDVWNNFSNRFRQVQSVLDRNRSLIQQVNENHQSRTTDNMVRNVSLIQELNGNISKVVSLYSDISTNFSTMFRQGNDFIGDDTNNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41983" PGL_stop="41431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41983" e_stop="41431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41983" e_stop="41431" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41983" stop="41431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41983" stop="41433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41982" stop="41454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATTTA</gDNA_template>
            <first_frame> N  S  F  N  F  S  Y  I  N  G  R  H  L  *  L  Q  S  P  S  S  N  H  N  Q  I  K  L  S  *  D  K  *  *  S  P  S  R  S  *  Q  L  Y  R  G  F  *  H  G  G  R  *  F  F  *  D  V  E  Q  F  F  Q  Q  F  *  A  S  A  V  C  V  G  S  K  *  I  V  D  S  T  S  *  R  E  S  S  I  E  N  T  R  *  H  G  A  E  R  E  L  N  S  R  T  Q  W  K  H  I  K  G  F  V  Y  I  F  *  F  Q  H  *  L  H  K  H  D  S  S  T  E  E  *  C  L  R  L  T  I  N  L  Q  C  F  Y  V  *  *  T  F  Q  V  Y  Y  Y  Q  L  S  C  K  L  *  F  Y  N  M  I  *  C  F  F  S  I  S  K  F  H  M  K  S  N  I  L  C  W  Q  F  </first_frame>
            <second_frame>  I  L  L  I  F  H  I  S  M  E  D  T  S  N  F  N  R  H  R  Q  T  I  T  K  S  N  S  R  K  I  N  N  N  R  H  R  V  R  D  N  S  T  V  D  F  N  M  E  E  G  D  S  S  E  M  W  N  N  F  S  N  N  F  R  Q  V  Q  S  V  L  D  R  N  R  L  L  I  Q  Q  V  N  E  N  H  Q  S  R  T  H  D  S  M  V  Q  N  V  S  L  I  Q  E  L  N  G  N  I  S  K  V  S  S  I  Y  S  D  F  N  T  D  F  T  N  M  I  H  Q  R  K  N  D  V  *  D  *  L  S  I  C  S  A  S  T  Y  N  K  L  F  K  Y  I  I  I  N  *  A  A  S  C  N  F  T  T  *  Y  D  V  S  F  L  S  P  N  F  I  *  N  Q  I  Y  Y  V  G  N  L </second_frame>
            <third_frame>   F  F  *  F  F  I  Y  Q  W  K  T  P  L  T  S  I  A  I  V  K  P  *  P  N  Q  T  L  V  R  *  I  I  I  A  I  A  F  V  T  T  L  P  W  I  L  T  W  R  K  V  I  L  L  R  C  G  T  I  F  P  T  I  L  G  K  C  S  L  C  W  I  E  I  D  C  *  F  N  K  L  T  R  I  I  N  R  E  H  T  I  A  W  C  R  T  *  A  *  F  K  N  S  M  E  T  Y  Q  R  F  R  L  Y  I  L  I  S  T  L  T  S  Q  T  *  F  I  N  G  R  M  M  F  E  I  D  Y  Q  S  A  V  L  L  R  I  I  N  F  S  S  I  L  L  S  I  K  L  Q  V  V  I  L  Q  H  D  M  M  F  L  F  Y  L  Q  I  S  Y  E  I  K  Y  I  M  L  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41982" stop="41587"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLIFHISMEDTSNFNRHRQTITKSNSRKINNNRHRVRDNSTVDFNMEEGDSSEMWNNFSNNFRQVQSVLDRNRLLIQQVNENHQSRTHDSMVQNVSLIQELNGNISKVSSIYSDFNTDFTNMIHQRKNDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44334" PGL_stop="44716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44334" e_stop="44716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="44334" e_stop="44716" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44334" stop="44716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTAGCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTCTTTAACTCATGTTTTGGTTTATCTCGTTATGAGAATCAAGGTATTATATGCATAAATTAAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAATATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATTTGACATGCTATACAAAACTTCTTAAATTGAAGAAGTGTAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTATTTTGAAAGACTCAAAGGGTGAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAGGGTAAGACGATGGATTCAAATTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  A  A  R  V  S  S  Q  L  R  L  S  F  S  F  S  L  T  H  V  L  V  Y  L  V  M  R  I  K  V  L  Y  A  *  I  K  V  C  I  F  *  N  I  L  *  F  R  I  K  *  Y  S  V  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  *  R  S  V  K  F  *  *  H  E  F  E  C  Y  F  D  Y  F  E  R  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  G  *  D  D  G  F  K  F  H   </first_frame>
            <second_frame>  F  I  T  R  *  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  L  *  L  M  F  W  F  I  S  L  *  E  S  R  Y  Y  M  H  K  L  R  Y  V  F  S  K  I  F  Y  D  L  E  *  N  N  I  Q  S  L  T  I  I  R  N  R  R  H  I  L  L  L  V  E  F  D  M  L  Y  K  T  S  *  I  E  E  V  *  N  F  N  S  M  S  L  N  V  I  L  I  I  L  K  D  S  K  G  E  S  C  C  T  S  V  Y  Y  T  V  G  *  G  K  T  M  D  S  N  F  I  </second_frame>
            <third_frame>   L  *  H  V  S  S  T  S  L  *  P  I  K  I  E  F  *  F  F  F  N  S  C  F  G  L  S  R  Y  E  N  Q  G  I  I  C  I  N  *  G  M  Y  F  L  K  Y  F  M  I  *  N  K  I  I  F  S  H  *  Q  L  S  G  T  E  D  I  Y  Y  Y  W  L  N  L  T  C  Y  T  K  L  L  K  L  K  K  C  K  I  L  I  A  *  V  *  M  L  F  *  L  F  *  K  T  Q  R  V  S  H  V  V  L  R  S  I  I  P  L  V  R  V  R  R  W  I  Q  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0192J17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="47715" PGL_stop="47047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47715" e_stop="47047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="47715" e_stop="47047" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47715" stop="47047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47715" stop="47320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATATTCATTGCATTCAAGTTTTCATATTTCGCCAGATCAAAACAAACCTCATTGCATCCACCAAAAGAGAAAACATCTCCAATAATGTCAGGATTTTTGTGAAAAATCTTTATGCCCAAGGCACAAACCGTATTTGATATATTACGGTTATACTATCGCATAATTATTTATTTGTACCCCACTGACATTATACCTTGATTTATGTACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTATGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTAAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGATGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGGGATGTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCACATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTCATATTTGGAATCGATTGGTCAATTACGCTTCCGGCGTATTATAAACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  I  F  I  A  F  K  F  S  Y  F  A  R  S  K  Q  T  S  L  H  P  P  K  E  K  T  S  P  I  M  S  G  F  L  *  K  I  F  M  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  Y  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  W  L  F  D  I  D  S  N  K  T  *  L  I  G  M  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  P  H  *  S  F  A  P  S  F  F  K  E  F  H  I  W  N  R  L  V  N  Y  A  S  G  V  L  *  T  L </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  Y  S  L  H  S  S  F  H  I  S  P  D  Q  N  K  P  H  C  I  H  Q  K  R  K  H  L  Q  *  C  Q  D  F  C  E  K  S  L  C  P  R  H  K  P  Y  L  I  Y  Y  G  Y  T  I  A  *  L  F  I  C  T  P  L  T  L  Y  L  D  L  C  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  Y  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  R  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  G  C  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  S  R  N  F  I  F  G  I  D  W  S  I  T  L  P  A  Y  Y  K  L   </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  I  H  C  I  Q  V  F  I  F  R  Q  I  K  T  N  L  I  A  S  T  K  R  E  N  I  S  N  N  V  R  I  F  V  K  N  L  Y  A  Q  G  T  N  R  I  *  Y  I  T  V  I  L  S  H  N  Y  L  F  V  P  H  *  H  Y  T  L  I  Y  V  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  M  H  F  T  W  P  T  I  Y  L  S  T  L  Y  D  R  F  K  F  K  I  L  V  T  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  M  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  V  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  T  L  I  I  C  S  F  L  L  Q  G  I  S  Y  L  E  S  I  G  Q  L  R  F  R  R  I  I  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47269" stop="47048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDVFIFHYFRYLNLFQDFMKCYVNVLFYSTCLIIMTTLIICSFLLQGISYLESIGQLRFRRIINS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47713" stop="47516"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHCLARHYNIHCIQVFIFRQIKTNLIASTKRENISNNVRIFVKNLYAQGTNRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47328" PGL_stop="48285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47328" e_stop="48285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="47328" e_stop="48285" e_length="958"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47328" stop="47999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47329" stop="47877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47333" stop="47779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47728" stop="48137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47805" stop="48285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTGTGCCTTGGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAACTTGAATGCAATGAATATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTACAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAACACATGATTGAATATCCTCGAAGGACCATCGTTATGGGCTTATTCTATTCCGAGGAATCCAAGACAAAATTGATTGGTTAAGCAGATGCAGAATATTTA</gDNA_template>
            <first_frame> T  R  I  L  N  L  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  I  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  T  *  I  K  V  *  C  Q  W  G  T  N  K  *  L  C  D  S  I  T  V  I  Y  Q  I  R  F  V  P  W  A  *  R  F  F  T  K  I  L  T  L  L  E  M  F  S  L  L  V  D  A  M  R  F  V  L  I  W  R  N  M  K  T  *  M  Q  *  I  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  R  V  Q  K  N  D  P  N  S  P  C  I  F  M  K  W  S  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  D  E  F  L  G  D  E  T  L  S  W  Y  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  T  H  D  *  I  S  S  K  D  H  R  Y  G  L  I  L  F  R  G  I  Q  D  K  I  D  W  L  S  R  C  R  I  F  </first_frame>
            <second_frame>  R  G  S  *  I  *  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  *  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  N  Y  A  I  V  *  P  *  Y  I  K  Y  G  L  C  L  G  H  K  D  F  S  Q  K  S  *  H  Y  W  R  C  F  L  F  W  W  M  Q  *  G  L  F  *  S  G  E  I  *  K  L  E  C  N  E  Y  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  N  G  L  G  K  T  K  F  C  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  M  S  F  L  V  M  K  L  Y  L  G  T  I  R  A  L  V  H  L  T  N  N  I  *  L  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  G  L  F  Y  S  E  E  S  K  T  K  L  I  G  *  A  D  A  E  Y  L </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  Y  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  N  I  S  N  T  V  C  A  L  G  I  K  I  F  H  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  C  F  D  L  A  K  Y  E  N  L  N  A  M  N  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  K  G  T  K  E  *  P  *  *  S  L  Y  F  Y  E  M  V  L  V  R  Q  N  F  V  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  S  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  *  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  *  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  N  T  *  L  N  I  L  E  G  P  S  L  W  A  Y  S  I  P  R  N  P  R  Q  N  *  L  V  K  Q  M  Q  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0192J17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62122" PGL_stop="62904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62122" e_stop="62904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="62122" e_stop="62904" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62618" stop="62904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACATCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATGTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGATTCTTATGTATTTTTAGCTTTTTAGATACTCTTAGTTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGATTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  P  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  V  L  L  H  V  L  M  P  *  T  S  G  M  D  *  I  L  M  Y  F  *  L  F  R  Y  S  *  L  V  I  *  R  *  M  F  L  *  *  *  L  P  D  S  G  D  N  D  K  F  L  S  Y  R  S  *  L  F  M  S  L  S  L  P  H  Y  F  L  F  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </first_frame>
            <second_frame>  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  H  H  I  G  S  S  G  *  A  N  A  S  S  L  D  W  M  F  S  F  M  S  *  C  L  E  L  P  A  W  T  R  F  L  C  I  F  S  F  L  D  T  L  S  *  *  F  K  G  R  C  S  C  D  D  D  F  Q  I  L  G  I  M  I  S  F  *  V  I  E  V  D  Y  L  *  V  *  V  F  R  I  T  F  C  L  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  T  T  S  D  L  Q  G  E  L  T  L  L  A  W  T  G  C  S  P  S  C  L  D  A  L  N  F  R  H  G  L  D  S  Y  V  F  L  A  F  *  I  L  L  V  S  N  L  K  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  V  F  E  L  *  K  L  I  I  Y  E  F  K  S  S  A  L  L  S  V  Y  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  N  P  V  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0192J17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65621" PGL_stop="62911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65621" e_stop="62911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="65621" e_stop="62911" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65621" stop="64909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65621" stop="65026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65621" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65550" stop="64871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65550" stop="65192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65032" stop="64271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65032" stop="64372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64422" stop="63864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64418" stop="63655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64338" stop="63549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64336" stop="63803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64262" stop="63565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63701" stop="62982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63698" stop="63035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63343" stop="62911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTATCACGAAGAAAGGAGACGATGCAGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATTCCAGGCTTGGCTAACGTCACCGTTTTAGCTTTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAAACAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGTCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTTCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATTCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  S  L  R  K  I  H  H  H  S  I  L  R  N  Q  V  P  Q  E  E  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  T  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  H  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  I  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  Y  S  R  L  G  *  R  H  R  F  S  F  T  I  Q  D  C  K  L  R  R  K  P  S  H  A  Q  N  H  I  K  I  I  H  C  Q  D  K  Q  I  Y  I  S  V  A  P  H  K  V  Y  H  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  R  C  L  R  F  R  P  P  R  E  N  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  R  V  N  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  D  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  W  S  G  I  S  G  *  C  T  E  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  H  T  E  K  F  M  L  I  T  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  I  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  *  Q  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  V  L  E  R  S  T  I  T  P  S  L  E  T  K  C  P  K  K  N  T  A  S  S  Q  N  L  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  I  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  S  R  R  K  E  T  M  Q  T  G  L  E  V  *  S  P  S  H  T  N  G  S  I  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  M  P  R  I  T  S  K  S  S  I  A  K  I  N  K  S  T  *  V  L  L  P  T  K  F  T  T  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  K  E  D  T  *  E  N  V  D  P  G  S  N  S  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  T  S  D  A  S  A  S  D  R  L  G  K  T  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  G  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  Q  G  I  Y  F  S  I  N  K  L  E  N  E  V  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  F  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  I  L  K  S  S  C  *  S  L  V  I  T  G  P  V  V  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  S  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  D  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  S  A  P  R  R  T  L  H  L  A  K  T  Y  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  Y  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  Y  H  E  E  R  R  R  C  R  P  D  W  K  C  S  H  P  P  T  L  T  G  L  F  Q  A  W  L  T  S  P  F  *  L  Y  N  P  R  L  Q  I  A  E  K  A  K  S  C  P  E  S  H  Q  N  H  P  L  P  R  *  T  N  L  H  K  C  C  S  P  Q  S  L  P  H  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  I  R  K  I  H  K  K  T  W  I  Q  D  Q  T  V  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  *  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  *  S  Q  S  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  R  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  G  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  R  G  Y  T  S  P  *  T  S  *  R  T  R  S  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  S  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  Q  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  G  D  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  T  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64190" stop="63936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSRVNHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63389" stop="63135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQEHTEKFMLITCHYRPCSQTRKCAYFQWNIHAGIHSSRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64894" stop="64649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLSRRKETMQTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65357" stop="65118"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNTVHQAHERSRGIRKTKGHHYKFVMPIPHSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64607" stop="64386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHRFSFTIQDCKLRRKPSHAQNHIKIIHCQDKQIYISVAPHKVYHTRPIYLFNYHRLTHRSRNTNRHIKKFTM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63109" stop="62912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGDNSSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65425" stop="65228"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63880" stop="63686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="62978" PGL_stop="63531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62978" e_stop="63531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="62978" e_stop="63531" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62978" stop="63531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGAATTGTCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGATCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCCTGTAATGACAAGTGATCAACATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGAAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGACCTCGTTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  V  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  K  H  I  S  S  S  D  Y  R  A  C  N  D  K  *  S  T  *  T  F  Q  Y  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  E  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  D  L  V   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  L  S  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  D  P  R  M  D  V  P  L  E  I  S  T  F  P  R  L  T  T  G  P  V  M  T  S  D  Q  H  E  L  F  S  M  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  K  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  T  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  I  P  A  W  M  F  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  V  I  N  M  N  F  S  V  C  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  *  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62979" stop="63530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETEQVQNEELSPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMDPRMDVPLEISTFPRLTTGPVMTSDQHELFSMFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVKFVTYQFQGNAKMWWRSHIECQPIEAPPMTWTSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="63605" PGL_stop="65049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63605" e_stop="63791"/>
            <exon e_start="64536" e_stop="65049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="63605" e_stop="63791" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63792" i_stop="64535" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="64536" e_stop="65049" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63605" stop="63791"/>
              <exon start="64536" stop="65049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACTCCACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTGGGCATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAAAGCTAAAACGGTGACGTTAGCCAAGCCTGGAATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCTGCATCGTCTCCTTTCTTCGTGATAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  P  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  G  R  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  G  H  D  L  A  F  S  A  I  C  N  L  G  L  *  S  *  N  G  D  V  S  Q  A  W  N  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  L  H  R  L  L  S  S  *  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  P  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  K  A  K  T  V  T  L  A  K  P  G  I  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  V  S  F  L  R  D  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  H  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  S  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  A  *  L  G  F  L  R  N  L  Q  S  W  I  V  K  L  K  R  *  R  *  P  S  L  E  *  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  I  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63606" stop="63791"/>
                    <exon start="64536" stop="65048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATPLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCKAKTVTLAKPGIDPLVWEGDYTSNPVCIVSFLRDKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="67101" PGL_stop="66925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67101" e_stop="66925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="67101" e_stop="66925" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67101" stop="66925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAACGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  T  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  R  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0192J17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="84881" PGL_stop="85399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84881" e_stop="85399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="84881" e_stop="85399" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84881" stop="85399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACTAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</gDNA_template>
            <first_frame> F  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  K  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  L  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  *  M  N  F  S  F  N  Y  D  C  K  L  N  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  *  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  *  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  I  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  K  *  I  S  V  L  I  T  T  A  N  *  T  L  C  V  *  I  N  K  R  T  N  M  W  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  S  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  R  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  L  N  E  F  Q  F  *  L  R  L  Q  I  E  H  F  V  F  R  *  I  N  V  Q  T  C  G  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84881" stop="85258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKKDWSDPKHVVAETVYPPRYRRSSGRLRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="88790" PGL_stop="87883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88790" e_stop="88510"/>
            <exon e_start="88307" e_stop="88185"/>
            <exon e_start="88101" e_stop="87883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.972"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.984"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="88790" e_stop="88510" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="88509" i_stop="88308" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="88307" e_stop="88185" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88184" i_stop="88102" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="88101" e_stop="87883" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88790" stop="88510"/>
              <exon start="88307" stop="88185"/>
              <exon start="88101" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTTACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCAATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  G  M  S  M  W  M  V  L  V  L  P  *  M  R  V  N  Q  *  S  L  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  N  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  Q  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  K  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  G  L  L  L  K  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  L  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  R  G  C  Q  C  G  W  C  W  C  C  R  K  *  G  *  T  N  S  H  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  T  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  R  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  S  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  Y  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  G  D  V  N  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  T  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  P  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  E  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  G  I  A  V  K  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88788" stop="88510"/>
                    <exon start="88307" stop="88185"/>
                    <exon start="88101" stop="87883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSYKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVNVDGVGVAVNEGEPIVTDPKDGDAHQSHQDLNEHIMDQPVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIEALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITGIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90042" PGL_stop="89175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90042" e_stop="89492"/>
            <exon e_start="89393" e_stop="89175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="90042" e_stop="89492" e_length="551"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89491" i_stop="89394" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="89393" e_stop="89175" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90042" stop="89492"/>
              <exon start="89393" stop="89175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG : TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTGGATGATTTCTCCACAAAACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAGAAGAAAAAA</gDNA_template>
            <first_frame> N  L  V  *  M  I  L  H  Y  *  Q  D  L  R  S  E  E  I  P  M  I  S  N  T  Q  N  K  L  I  V  C  F  L  K  S  I  S  L  V  Q  S  I  V  L  Q  S  I  N  *  F  K  G  L  R  W  V  I  G  R  A  I  R  M  H  S  K  C  L  Y  C  S  L  F  I  H  L  Y  *  L  L  L  I  T  Q  R  Y  L  L  S  T  F  *  W  L  K  M  V  D  I  N  I  F  L  G  V  S  Y  H  F  P  N  *  L  V  H  L  D  R  I  L  T  L  V  K  S  C  T  D  Y  M  G  C  H  M  H  *  M  F  G  Y  T  N  V  H  P  I  *  I  Q  K  *  L  *  E  N  A  M  S  S  Q  E  Y  A  I  G  E  L  C  L  K  R  Q  S  L  K  C  L  C  P  P  F  S  K  S :   *  N  A  C  S  N  I  V  P  T  A  E  E  I  E  A  F  D  I  A  Q  V  E  H  A  H  S  T  S  I  P  L  V  Q  P  N  E  Q  D  D  L  D  D  F  S  T  K  P  P  E  Q  L  L  R  T  Y  S  R  V  S  D  T  S  P  P  P  P  P  K  R  R  K   </first_frame>
            <second_frame>  I  W  Y  R  *  F  C  I  I  N  R  T  *  G  Q  R  K  Y  Q  *  F  Q  I  P  R  T  N  *  L  Y  A  F  *  K  V  F  P  W  C  S  Q  *  C  Y  K  A  S  T  S  S  K  V  *  D  G  *  L  G  E  Q  S  G  C  T  P  N  V  Y  T  V  L  Y  S  Y  I  C  I  S  F  Y  *  *  H  S  D  I  Y  C  R  L  S  N  G  *  R  W  *  I  S  T  F  S  L  G  S  A  I  I  F  Q  T  N  W  F  T  *  T  G  F  *  R  *  *  K  V  V  P  I  I  W  D  A  I  C  T  K  C  L  D  I  R  M  C  I  Q  F  K  F  R  N  S  C  E  R  T  Q  C  H  P  K  N  M  Q  L  E  S  C  V  *  K  G  K  V  *  N  A  Y  V  H  H  F  P  K   : V  R  M  H  V  Q  T  L  S  Q  Q  Q  R  K  L  K  L  L  I  L  L  K  L  N  M  L  I  L  H  Q  Y  H  *  Y  N  Q  T  S  K  M  I  W  M  I  S  P  Q  N  R  Q  N  S  Y  *  G  H  I  L  E  C  L  I  H  L  L  H  H  R  Q  K  E  E  K  </second_frame>
            <third_frame>   F  G  I  D  D  F  A  L  L  T  G  L  K  V  R  G  N  T  N  D  F  K  Y  P  E  Q  T  N  C  M  L  F  K  K  Y  F  P  G  A  V  N  S  V  T  K  H  Q  L  V  Q  R  F  K  M  G  N  W  E  S  N  Q  D  A  L  Q  M  S  I  L  F  F  I  H  T  F  V  L  A  S  I  D  N  T  A  I  S  I  V  D  F  L  M  V  E  D  G  R  Y  Q  H  F  P  W  G  Q  L  S  F  S  K  L  I  G  S  L  R  Q  D  F  D  V  S  K  K  L  Y  R  L  Y  G  M  P  Y  A  L  N  V  W  I  Y  E  C  A  S  N  L  N  S  E  I  A  V  R  E  R  N  V  I  P  R  I  C  N  W  R  V  V  S  E  K  A  K  F  E  M  L  M  S  T  I  F  Q  K  :  L  E  C  M  F  K  H  C  P  N  S  R  G  N  *  S  F  *  Y  C  S  S  *  T  C  S  F  Y  I  N  T  I  S  T  T  K  R  A  R  *  F  G  *  F  L  H  K  T  A  R  T  V  I  E  D  I  F  *  S  V  *  Y  I  S  S  T  T  A  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90040" stop="89492"/>
                    <exon start="89393" stop="89349"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGIDDFALLTGLKVRGNTNDFKYPEQTNCMLFKKYFPGAVNSVTKHQLVQRFKMGNWESNQDALQMSILFFIHTFVLASIDNTAISIVDFLMVEDGRYQHFPWGQLSFSKLIGSLRQDFDVSKKLYRLYGMPYALNVWIYECASNLNSEIAVRERNVIPRICNWRVVSEKAKFEMLMSTIFQKLECMFKHCPNSRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="98303" PGL_stop="94354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98303" e_stop="98084"/>
            <exon e_start="96902" e_stop="96825"/>
            <exon e_start="96429" e_stop="96289"/>
            <exon e_start="95875" e_stop="95799"/>
            <exon e_start="95663" e_stop="95514"/>
            <exon e_start="94871" e_stop="94354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.711" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.595" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98303" e_stop="98084" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.890">
            <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96902" e_stop="96825" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96429" e_stop="96289" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.711">
            <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95875" e_stop="95799" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.840">
            <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95663" e_stop="95514" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.595" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="94871" e_stop="94354" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98303" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98281" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98235" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98235" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98234" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98230" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98227" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98225" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98225" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98224" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98224" stop="98084"/>
              <exon start="96902" stop="96848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98223" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98220" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98219" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98210" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96385" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95868" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95864" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95816" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94710" stop="94491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94701" stop="94354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94697" stop="94357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94671" stop="94361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAATTGAATGGAGTAATACAAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA : GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG : GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG : AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG : TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC : GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTTGCTTGCT</gDNA_template>
            <first_frame> F  E  L  N  G  V  I  Q  K  R  G  K  L  K  D  E  V  I  T  R  K  G  R  E  E  K  R  R  E  *  G  F  R  *  I  E  D  G  W  T  T  E  T  T  V  R  S  L  W  I  L  Y  C  S  D  Q  L  Q  Q  W  R  L  G  R  Y  S  L  R  H  L  C  P  Q   : S  G  H  I  I  A  R  L  L  W  L  E  L  K  T  C  Y  T  G  P  *  S  S  V  S  K   : G  C  N  C  S  A  Y  I  G  D  C  L  L  W  W  *  *  F  N  G  T  S  F  I  W  I  G  S  S  C  T  S  S  R  V  H  *  E  H  E  K  N  C  N  S  S  Q   : E  H  L  R  E  Y  S  H  N  F  S  Q  L  S  T  C  *  R  G  Q  N  S  *  K  Y  K  :  C  I  F  Q  *  V  G  S  N  K  *  I  V  S  T  V  F  *  G  L  Y  R  A  M  Q  R  D  E  S  E  G  C  *  S  L  D  S  T  S  E  K  K  R  L  V  D  C  L  F  Y  :  G  W  D  S  L  S  G  G  G  E  *  N  S  C  *  R  D  P  Q  G  V  E  G  S  R  V  D  T  *  F  T  L  E  I  N  G  N  R  I  S  *  R  F  S  L  *  F  G  F  S  R  W  *  N  H  N  K  P  I  *  L  D  L  P  S  T  N  S  M  G  L  D  *  P  S  N  I  K  L  H  N  V  S  Y  I  F  P  F  H  S  N  A  N  L  S  L  L  Y  S  *  N  I  L  K  L  L  L  A  Q  L  G  L  *  L  I  N  N  T  I  S  S  V  C  N  Y  V  I  V  S  S  I  L  G  W  T  M  *  H  F  C  S  T  S  W  R  W  N  I  P  N  L  Q  *  H  I  T  V  *  L  L  L  W  *  I  Y  L  S  F  D  P  C  L   </first_frame>
            <second_frame>  L  N  *  M  E  *  Y  K  R  G  E  N  *  K  M  R  L  *  Q  G  R  E  E  K  R  R  E  E  N  K  G  F  G  E  S  R  M  V  G  P  Q  R  P  Q  F  V  L  F  G  S  S  I  V  Q  I  S  Y  S  N  G  G  W  G  A  I  L  S  D  I  Y  A  R  K  :  A  D  I  L  L  R  G  Y  Y  G  W  N  S  R  R  A  I  Q  V  L  D  Q  V  F  P  K  :  D  A  T  V  Q  P  T  L  V  I  V  Y  F  G  G  N  D  S  M  G  P  H  S  S  G  L  G  P  H  V  P  L  P  E  Y  I  E  N  M  R  K  I  A  T  H  L  K  :  S  I  S  E  N  I  R  I  I  F  L  S  C  P  P  V  D  E  A  R  I  R  E  N  T  S :   A  Y  F  S  E  L  V  R  T  N  E  L  C  R  Q  Y  S  E  A  C  I  E  L  C  K  E  M  N  L  K  V  V  D  L  W  T  A  L  Q  K  R  K  D  W  L  T  A  C  F  T :   D  G  I  H  L  A  E  E  G  S  K  I  V  V  E  E  I  L  K  V  L  K  E  A  E  W  T  P  S  L  H  W  K  S  M  A  T  E  F  P  E  D  S  P  Y  D  L  V  L  A  D  G  K  T  T  I  N  P  S  D  W  T  Y  H  R  Q  I  Q  W  D  *  I  N  L  Q  T  *  S  F  T  M  Y  P  I  F  S  L  F  I  Q  M  L  I  C  H  F  F  I  H  K  I  Y  *  N  Y  S  W  P  N  *  A  F  S  *  *  I  I  L  Y  L  V  F  V  I  M  *  L  Y  L  L  F  *  D  G  Q  C  S  T  F  V  P  Q  V  G  D  G  I  F  P  T  Y  N  N  I  S  P  C  N  C  S  F  G  K  Y  I  C  P  L  I  L  A  C  </second_frame>
            <third_frame>   *  I  E  W  S  N  T  K  E  G  K  I  E  R  *  G  Y  N  K  E  G  K  R  R  E  E  K  R  I  R  V  S  V  N  R  G  W  L  D  H  R  D  H  S  S  F  S  L  D  P  L  L  F  R  S  V  T  A  M  A  V  G  A  L  F  S  P  T  F  M  P  A  K :   R  T  Y  Y  C  E  V  T  M  V  G  T  Q  D  V  L  Y  R  S  L  I  K  C  F  Q  R :   M  Q  L  F  S  L  H  W  *  L  F  T  L  V  V  M  I  Q  W  D  L  I  H  L  D  W  V  L  M  Y  L  F  Q  S  T  L  R  T  *  E  K  L  Q  L  I  S  R :   A  S  Q  R  I  F  A  *  F  F  S  V  V  H  L  L  T  R  P  E  F  V  K  I  Q   : V  H  I  S  V  S  W  F  E  Q  M  N  C  V  D  S  I  L  R  P  V  *  S  Y  A  K  R  *  I  *  R  L  L  I  F  G  Q  H  F  R  K  E  K  I  G  *  L  L  V  L   : R  M  G  F  T  *  R  R  R  G  V  K  *  L  L  K  R  S  S  R  C  *  R  K  P  S  G  H  L  V  Y  T  G  N  Q  W  Q  Q  N  F  L  K  I  L  L  M  I  W  F  *  Q  M  V  K  P  Q  *  T  H  L  T  G  L  T  I  D  K  F  N  G  I  R  L  T  F  K  H  K  A  S  Q  C  I  L  Y  F  P  F  S  F  K  C  *  F  V  T  S  L  F  I  K  Y  I  E  I  T  L  G  P  T  R  P  L  V  N  K  *  Y  Y  I  *  C  L  *  L  C  D  C  I  F  Y  F  R  M  D  N  V  A  L  L  F  H  K  L  E  M  E  Y  S  Q  L  T  I  T  Y  H  R  V  I  A  P  L  V  N  I  S  V  L  *  S  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98248" stop="98084"/>
                    <exon start="96902" stop="96825"/>
                    <exon start="96429" stop="96289"/>
                    <exon start="95875" stop="95799"/>
                    <exon start="95663" stop="95514"/>
                    <exon start="94871" stop="94658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGREEKRREENKGFGESRMVGPQRPQFVLFGSSIVQISYSNGGWGAILSDIYARKADILLRGYYGWNSRRAIQVLDQVFPKDATVQPTLVIVYFGGNDSMGPHSSGLGPHVPLPEYIENMRKIATHLKSISENIRIIFLSCPPVDEARIRENTSAYFSELVRTNELCRQYSEACIELCKEMNLKVVDLWTALQKRKDWLTACFTDGIHLAEEGSKIVVEEILKVLKEAEWTPSLHWKSMATEFPEDSPYDLVLADGKTTINPSDWTYHRQIQWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96190" e_stop="96169"/>
            <exon e_start="95875" e_stop="95799"/>
            <exon e_start="95663" e_stop="95514"/>
            <exon e_start="94871" e_stop="94354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.711" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.840" e_score="0.987"/>
          <exon-intron don_prob="0.595" acc_prob="0.999" e_score="0.980"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96190" e_stop="96169" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.711">
            <gDNA_intron_boundary i_start="96168" i_stop="95876" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="95875" e_stop="95799" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.840">
            <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="95663" e_stop="95514" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.595" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="94871" e_stop="94354" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96190" stop="96169"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95868" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95864" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95816" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94710" stop="94491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94701" stop="94354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94697" stop="94357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94671" stop="94361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATTGCAACTCATCTCAAG : AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG : TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC : GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTTGCTTGCT</gDNA_template>
            <first_frame> K  N  C  N  S  S  Q   : E  H  L  R  E  Y  S  H  N  F  S  Q  L  S  T  C  *  R  G  Q  N  S  *  K  Y  K  :  C  I  F  Q  *  V  G  S  N  K  *  I  V  S  T  V  F  *  G  L  Y  R  A  M  Q  R  D  E  S  E  G  C  *  S  L  D  S  T  S  E  K  K  R  L  V  D  C  L  F  Y  :  G  W  D  S  L  S  G  G  G  E  *  N  S  C  *  R  D  P  Q  G  V  E  G  S  R  V  D  T  *  F  T  L  E  I  N  G  N  R  I  S  *  R  F  S  L  *  F  G  F  S  R  W  *  N  H  N  K  P  I  *  L  D  L  P  S  T  N  S  M  G  L  D  *  P  S  N  I  K  L  H  N  V  S  Y  I  F  P  F  H  S  N  A  N  L  S  L  L  Y  S  *  N  I  L  K  L  L  L  A  Q  L  G  L  *  L  I  N  N  T  I  S  S  V  C  N  Y  V  I  V  S  S  I  L  G  W  T  M  *  H  F  C  S  T  S  W  R  W  N  I  P  N  L  Q  *  H  I  T  V  *  L  L  L  W  *  I  Y  L  S  F  D  P  C  L   </first_frame>
            <second_frame>  K  I  A  T  H  L  K  :  S  I  S  E  N  I  R  I  I  F  L  S  C  P  P  V  D  E  A  R  I  R  E  N  T  S :   A  Y  F  S  E  L  V  R  T  N  E  L  C  R  Q  Y  S  E  A  C  I  E  L  C  K  E  M  N  L  K  V  V  D  L  W  T  A  L  Q  K  R  K  D  W  L  T  A  C  F  T :   D  G  I  H  L  A  E  E  G  S  K  I  V  V  E  E  I  L  K  V  L  K  E  A  E  W  T  P  S  L  H  W  K  S  M  A  T  E  F  P  E  D  S  P  Y  D  L  V  L  A  D  G  K  T  T  I  N  P  S  D  W  T  Y  H  R  Q  I  Q  W  D  *  I  N  L  Q  T  *  S  F  T  M  Y  P  I  F  S  L  F  I  Q  M  L  I  C  H  F  F  I  H  K  I  Y  *  N  Y  S  W  P  N  *  A  F  S  *  *  I  I  L  Y  L  V  F  V  I  M  *  L  Y  L  L  F  *  D  G  Q  C  S  T  F  V  P  Q  V  G  D  G  I  F  P  T  Y  N  N  I  S  P  C  N  C  S  F  G  K  Y  I  C  P  L  I  L  A  C  </second_frame>
            <third_frame>   K  L  Q  L  I  S  R :   A  S  Q  R  I  F  A  *  F  F  S  V  V  H  L  L  T  R  P  E  F  V  K  I  Q   : V  H  I  S  V  S  W  F  E  Q  M  N  C  V  D  S  I  L  R  P  V  *  S  Y  A  K  R  *  I  *  R  L  L  I  F  G  Q  H  F  R  K  E  K  I  G  *  L  L  V  L   : R  M  G  F  T  *  R  R  R  G  V  K  *  L  L  K  R  S  S  R  C  *  R  K  P  S  G  H  L  V  Y  T  G  N  Q  W  Q  Q  N  F  L  K  I  L  L  M  I  W  F  *  Q  M  V  K  P  Q  *  T  H  L  T  G  L  T  I  D  K  F  N  G  I  R  L  T  F  K  H  K  A  S  Q  C  I  L  Y  F  P  F  S  F  K  C  *  F  V  T  S  L  F  I  K  Y  I  E  I  T  L  G  P  T  R  P  L  V  N  K  *  Y  Y  I  *  C  L  *  L  C  D  C  I  F  Y  F  R  M  D  N  V  A  L  L  F  H  K  L  E  M  E  Y  S  Q  L  T  I  T  Y  H  R  V  I  A  P  L  V  N  I  S  V  L  *  S  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96189" stop="96169"/>
                    <exon start="95875" stop="95799"/>
                    <exon start="95663" stop="95514"/>
                    <exon start="94871" stop="94658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIATHLKSISENIRIIFLSCPPVDEARIRENTSAYFSELVRTNELCRQYSEACIELCKEMNLKVVDLWTALQKRKDWLTACFTDGIHLAEEGSKIVVEEILKVLKEAEWTPSLHWKSMATEFPEDSPYDLVLADGKTTINPSDWTYHRQIQWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98228" e_stop="98084"/>
            <exon e_start="96902" e_stop="96825"/>
            <exon e_start="96429" e_stop="96143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98228" e_stop="98084" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.890">
            <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96902" e_stop="96825" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96429" e_stop="96143" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98228" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98224" stop="98084"/>
              <exon start="96902" stop="96848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA : GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG : GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTC</gDNA_template>
            <first_frame> K  R  R  E  *  G  F  R  *  I  E  D  G  W  T  T  E  T  T  V  R  S  L  W  I  L  Y  C  S  D  Q  L  Q  Q  W  R  L  G  R  Y  S  L  R  H  L  C  P  Q   : S  G  H  I  I  A  R  L  L  W  L  E  L  K  T  C  Y  T  G  P  *  S  S  V  S  K   : G  C  N  C  S  A  Y  I  G  D  C  L  L  W  W  *  *  F  N  G  T  S  F  I  W  I  G  S  S  C  T  S  S  R  V  H  *  E  H  E  K  N  C  N  S  S  Q  G  I  L  F  Y  Y  N  N  V  L  F  F  C  F  R  A  A  C  L  L  F  L  S  I  K  I  *  T  H  *  E  H  E  K  N  C  N  S  S  Q  G  I  L  F  Y  Y  N  N  V </first_frame>
            <second_frame>  R  E  E  N  K  G  F  G  E  S  R  M  V  G  P  Q  R  P  Q  F  V  L  F  G  S  S  I  V  Q  I  S  Y  S  N  G  G  W  G  A  I  L  S  D  I  Y  A  R  K  :  A  D  I  L  L  R  G  Y  Y  G  W  N  S  R  R  A  I  Q  V  L  D  Q  V  F  P  K  :  D  A  T  V  Q  P  T  L  V  I  V  Y  F  G  G  N  D  S  M  G  P  H  S  S  G  L  G  P  H  V  P  L  P  E  Y  I  E  N  M  R  K  I  A  T  H  L  K  V  S  Y  F  T  T  I  M  S  F  S  F  V  F  E  L  P  V  C  Y  F  Y  L  *  K  Y  E  H  I  E  N  M  R  K  I  A  T  H  L  K  V  S  Y  F  T  T  I  M   </second_frame>
            <third_frame>   E  K  R  I  R  V  S  V  N  R  G  W  L  D  H  R  D  H  S  S  F  S  L  D  P  L  L  F  R  S  V  T  A  M  A  V  G  A  L  F  S  P  T  F  M  P  A  K :   R  T  Y  Y  C  E  V  T  M  V  G  T  Q  D  V  L  Y  R  S  L  I  K  C  F  Q  R :   M  Q  L  F  S  L  H  W  *  L  F  T  L  V  V  M  I  Q  W  D  L  I  H  L  D  W  V  L  M  Y  L  F  Q  S  T  L  R  T  *  E  K  L  Q  L  I  S  R  Y  L  I  L  L  Q  *  C  P  F  L  L  F  S  S  C  L  F  A  I  F  I  Y  K  N  M  N  T  L  R  T  *  E  K  L  Q  L  I  S  R  Y  L  I  L  L  Q  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98227" stop="98084"/>
                    <exon start="96902" stop="96825"/>
                    <exon start="96429" stop="96217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REENKGFGESRMVGPQRPQFVLFGSSIVQISYSNGGWGAILSDIYARKADILLRGYYGWNSRRAIQVLDQVFPKDATVQPTLVIVYFGGNDSMGPHSSGLGPHVPLPEYIENMRKIATHLKVSYFTTIMSFSFVFELPVCYFYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="106064" PGL_stop="103976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106064" e_stop="105717"/>
            <exon e_start="103993" e_stop="103976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="0.994"/>
          <exon-only e_score="0.611"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="106064" e_stop="105717" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="105716" i_stop="103994" i_length="1723"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="103993" e_stop="103976" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106064" stop="105717"/>
              <exon start="103993" stop="103976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106064" stop="105717"/>
              <exon start="103993" stop="103976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTT : ATTATAAGAAGAAGATAA</gDNA_template>
            <first_frame> R  P  G  L  R  N  A  H  S  S  V  A  F  T  T  S  E  S  I  D  I  V  K  A  S  I  L  P  I  L  L  D  V  H  *  H  S  E  S  N  *  Q  S  G  D  V  *  Y  G  I  L  F  K  T  F  Y  R  R  W  I  H  *  F  Y  F  I  F  A  I  L  L  *  Y  A  A  F  T  N  F  *  A  E  *  T  S  *  T  R  L  G  K  Q  K  C  L  F  G  C  E  S  S  *  D  I  N  G  M  L  A  I  N  C  A  I  S  F  :  I  I  R  R  R  * </first_frame>
            <second_frame>  G  R  V  C  V  M  H  I  A  V  W  L  L  Q  L  Q  K  A  L  T  L  *  K  Q  V  Y  F  Q  F  Y  W  M  S  T  N  I  V  K  A  T  N  N  Q  E  M  F  D  M  E  F  C  S  K  L  S  I  E  G  G  F  I  N  F  I  L  F  L  Q  F  F  C  N  M  L  H  L  Q  I  F  K  Q  N  E  P  L  R  L  G  *  G  S  K  N  V  Y  L  V  V  N  H  P  R  I  L  M  V  C  *  P  *  I  V  Q  F  L  L :   L  *  E  E  D   </second_frame>
            <third_frame>   A  G  F  A  *  C  T  *  Q  C  G  F  Y  N  F  R  K  H  *  H  C  E  S  K  Y  T  S  N  F  I  G  C  P  L  T  *  *  K  Q  L  T  I  R  R  C  L  I  W  N  F  V  Q  N  F  L  *  K  V  D  S  L  I  L  F  Y  F  C  N  S  F  V  I  C  C  I  Y  K  F  L  S  R  M  N  L  L  D  *  A  R  E  A  K  M  F  I  W  L  *  I  I  L  G  Y  *  W  Y  V  S  H  K  L  C  N  F  F   : Y  Y  K  K  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105997" stop="105797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQVYFQFYWMSTNIVKATNNQEMFDMEFCSKLSIEGGFINFILFLQFFCNMLHLQIFKQNEPLRLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="116578" PGL_stop="110543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116578" e_stop="116500"/>
            <exon e_start="116358" e_stop="116263"/>
            <exon e_start="116182" e_stop="116082"/>
            <exon e_start="112310" e_stop="112274"/>
            <exon e_start="110742" e_stop="110543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.932" e_score="0.962"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="0.948"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="0.970"/>
          <exon-intron don_prob="0.990" acc_prob="0.945" e_score="0.946"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="116578" e_stop="116500" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.932">
            <gDNA_intron_boundary i_start="116499" i_stop="116359" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="116358" e_stop="116263" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116262" i_stop="116183" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="116182" e_stop="116082" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="116081" i_stop="112311" i_length="3771"/>
          </intron>
          <exon e_serial="4" e_score="0.946">
            <gDNA_exon_boundary e_start="112310" e_stop="112274" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.945">
            <gDNA_intron_boundary i_start="112273" i_stop="110743" i_length="1531"/>
          </intron>
          <exon e_serial="5" e_score="0.925">
            <gDNA_exon_boundary e_start="110742" e_stop="110543" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116578" stop="116500"/>
              <exon start="116358" stop="116263"/>
              <exon start="116182" stop="116082"/>
              <exon start="112310" stop="112274"/>
              <exon start="110742" stop="110543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAAATAGATGTCCTCATTCTTCTTATGATCAAGTGCATGAAGTTGTGAAGAAAGAGCTTGGAGGTGCACCTGATGAA : ATCTTTGATGAATTTGATCCGATACCAATAGCAAGTGCTTCTCTTGCTCAAGTCCACGTTGCTCGAACGCGTGATGGGCAAAAAGTTGCTGTCAAG : GTTCAGCACACACATATGACAGATACTGCTGCAGCAGATTATGCAACTGTGGAGTTGATAGTGAACACATTGCATCGATTTTTTCCTTCCTTTGATTACAG : GTGGTTGATTGCTGAAGTTCGTGAAAGTATACCTAAG : GAACTAGATTTCTTGGTTGAGGCCAAAAACAGCATAAAATGTATGGATAACTTTCGGAAGCTGTCTCCTCATATTGCAGACTACGTTTATGCACCAAAGGTGTATTGGAATTTAAGCACTTCAAAGCTGTTAACCATGGAATATATGGAGGCTGCACAAGTAAATGACTTGAAGAGCATTCAAAGGCTTGGAATTCAGCC</gDNA_template>
            <first_frame> V  K  *  M  S  S  F  F  L  *  S  S  A  *  S  C  E  E  R  A  W  R  C  T  *  *   : N  L  *  *  I  *  S  D  T  N  S  K  C  F  S  C  S  S  P  R  C  S  N  A  *  W  A  K  S  C  C  Q   : G  S  A  H  T  Y  D  R  Y  C  C  S  R  L  C  N  C  G  V  D  S  E  H  I  A  S  I  F  S  F  L  *  L  Q  :  V  V  D  C  *  S  S  *  K  Y  T  *   : G  T  R  F  L  G  *  G  Q  K  Q  H  K  M  Y  G  *  L  S  E  A  V  S  S  Y  C  R  L  R  L  C  T  K  G  V  L  E  F  K  H  F  K  A  V  N  H  G  I  Y  G  G  C  T  S  K  *  L  E  E  H  S  K  A  W  N  S  A </first_frame>
            <second_frame>  L  N  R  C  P  H  S  S  Y  D  Q  V  H  E  V  V  K  K  E  L  G  G  A  P  D  E  :  I  F  D  E  F  D  P  I  P  I  A  S  A  S  L  A  Q  V  H  V  A  R  T  R  D  G  Q  K  V  A  V  K  :  V  Q  H  T  H  M  T  D  T  A  A  A  D  Y  A  T  V  E  L  I  V  N  T  L  H  R  F  F  P  S  F  D  Y  R :   W  L  I  A  E  V  R  E  S  I  P  K  :  E  L  D  F  L  V  E  A  K  N  S  I  K  C  M  D  N  F  R  K  L  S  P  H  I  A  D  Y  V  Y  A  P  K  V  Y  W  N  L  S  T  S  K  L  L  T  M  E  Y  M  E  A  A  Q  V  N  D  L  K  S  I  Q  R  L  G  I  Q   </second_frame>
            <third_frame>   *  I  D  V  L  I  L  L  M  I  K  C  M  K  L  *  R  K  S  L  E  V  H  L  M  K :   S  L  M  N  L  I  R  Y  Q  *  Q  V  L  L  L  L  K  S  T  L  L  E  R  V  M  G  K  K  L  L  S  R :   F  S  T  H  I  *  Q  I  L  L  Q  Q  I  M  Q  L  W  S  *  *  *  T  H  C  I  D  F  F  L  P  L  I  T   : G  G  *  L  L  K  F  V  K  V  Y  L  R :   N  *  I  S  W  L  R  P  K  T  A  *  N  V  W  I  T  F  G  S  C  L  L  I  L  Q  T  T  F  M  H  Q  R  C  I  G  I  *  A  L  Q  S  C  *  P  W  N  I  W  R  L  H  K  *  M  T  *  R  A  F  K  G  L  E  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116577" stop="116500"/>
                    <exon start="116358" stop="116263"/>
                    <exon start="116182" stop="116082"/>
                    <exon start="112310" stop="112274"/>
                    <exon start="110742" stop="110545"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRCPHSSYDQVHEVVKKELGGAPDEIFDEFDPIPIASASLAQVHVARTRDGQKVAVKVQHTHMTDTAAADYATVELIVNTLHRFFPSFDYRWLIAEVRESIPKELDFLVEAKNSIKCMDNFRKLSPHIADYVYAPKVYWNLSTSKLLTMEYMEAAQVNDLKSIQRLGIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 264 chains have been computed
$ 
$ memory statistics:
$ 572296 bytes spliced alignments in total
$ 89 spliced alignments have been stored
$ 6430 bytes was the average size of a spliced alignment
$ 28680 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1509 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 325 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:38:03
-->
