<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:38:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340397" ref_strand="+" ref_description="SGN-U340397        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoinositide-specific phospholipase C (PLC2), identical to phosphoinositide specific phospholipase C(AtPLC2) GI:857374 (Arabidopsis thaliana) | chr3:2582373-2585857 REVERSE | Aliases: T8G24.4(evalue: 2e-72, score=240) genbank/nr: gi|56694216|gb|AAW22878.1| putative phospholipase C [Lycopersicon esculentum] (evalue: 1e-104, score=382)">
      <seq>agtaatataaaagagtactactcaacgcataacgaaaaagtgtaaatttgttaacacgacgatcggatcctgcctgagcaaaaacgaaatcgttttccgttagggtgacaatgtcgaaacaaacgtacaaagtcggattttttttccggcggcagttcaccatggctgccgcggaagctccggcggacattaagagcctatttaaacgttattccgacgacagcggagttatgagcgtccagaatcttcatagtttcttaattgagatccagaaggagaaaaatgttagcttagagaacgcagaagccattatcaataatcacggcggcgactccaagcagaaaggcctccagctcgatggcttcttcaagtttctcttttctgatgttaatcctcctctcgatcctaaacttgggattcaccatgatatgactgcacctctgtctcattactacatatacacaggccataattcatatttaactgggaatcaactgagtagtgattgcagtgatgttcccataatacaagctcttcagagaagtgttagagtaattgaattagatatttggccaaattcagacaaagatgatatagaagttctacatggaaggacactgactgctccagtgacgctaatcnaatgtttgaggtctatncaggagcatgcctttttgtgcatcggagtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7045" stop="3502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6745" g_stop="6330" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6329" i_stop="5966" i_length="364">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5965" g_stop="5769" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="613" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5768" i_stop="3880" i_length="1889">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3879" g_stop="3802" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="692" r_length="79" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U340397" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6745" e_stop="6330"/>
          <exon e_start="5965" e_stop="5769"/>
          <exon e_start="3879" e_stop="3802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATATAAAAGAGTACTACTCAACGCATAACGAAAAAGTGTAAATTTGTTAACACGACGATCGGATCCTGCCTGAGCAAAAACGAAATCGTTTTCCGTTAGGGTGACAATGTCGAAACAAACGTACAAAGTCGGATTTTTTTTCCGGCGGCAGTTCACCATGGCTGCCGCGGAAGCTCCGGCGGACATTAAGAGCCTATTTAAACGTTATTCCGACGACAGCGGAGTTATGAGCGTCCAGAATCTTCATAGTTTCTTAATTGAGATCCAGAAGGAGAAAAATGTTAGCTTAGAGAACGCAGAAGCCATTATCAATAATCACGGCGGCGACTCCAAGCAGAAAGGCCTCCAGCTCGATGGCTTCTTCAAGTTTCTCTTTTCTGATGTTAATCCTCCTCTCGATCCTAAACTTGGGGTACTAATTTTAATTTCATCAACAGTGACTTTCTTTACAAATTGTTTGACTTTGTGATCAACCAAATCCTTCCCACTTACTATATAAAAATGATTTATATTAGGAAAATGTATGATATAATTTGACTTGATACGAAATTTAAAAAAAATTGTAATGGTAAACTGAAGTTATGTCAAACTTATTAAAATGTCATTTAATTTCATGGCGTTAAATATGCTATCTGGAAAGTAGAATTTAAAACGTTGTTAAACAGACTAAAAAGAAAAATATTTTTTAAACAGAGGGAGTATATTACTTTATTTTAGATGTTGAAACACCACTCTATTTGGATAAAACTCATGATGTACTCTTCTTTGGATTCCAGATTCACCATGATATGACTGCACCTCTGTCTCATTACTACATATACACAGGCCATAATTCATATTTAACTGGGAATCAACTGAGTAGTGATTGCAGTGATGTTCCCATAATACAAGCTCTTCAGAGAAGTGTTAGAGTAATTGAATTAGATATTTGGCCAAATTCAGACAAAGATGATATAGAAGTTCTACATGGAAGGTGTGTCATGTTCTAATTTTTTTCTATCACCCTTAGCCTTCTATATTTTTTACTGAGCCAGACTCTAAAATTTTGCAGCACCTTTGCTTTCATTTGCACTTAAAATTTAATCTCAGTAAATAAGCTTATGCATTTGCACATAATGTACATGCATATCTTCACTCATATTATATAGACATGCTATGCATTTCTACATGTATACAAAGCACTAAACCAACAACACTAACTGATTAAGACCAAGAATTAAGACTATAAGCTGACAAGTGAGTGGACAACTTCCACTTACTAAATCCATATTATGAGTGTGCTAAAGCTTTTCAAAGGTTACTCTAGTTGTTTTATACAGTCGTGCTTTAGCTGTCTTGTTGCTTTTGTTAATGAGCTTCTTTTTCACACATCACAACATATCCAGATTGTTATTTACTATGGTACTAAATTTTACCACAAAATAATTAGATGAAGTTTGAGGAAATCATTTCAGGTGGGATGTTTTAAGAATATTTAATTAAAATGGAAGTGTCTCTCTCTCTAAGTATAGTTTAACTTTTAGATGAGGCAGTTCATACATCTAATTAACTGATAGTGCCTAAAAAACCATGTTGTTGGCACTATTTTAGAGCATGCCATGTCTGAGGAAAAAGGGACCTGCAGTTGTTTTATGAAGCCAATCAACCAAACTGAACCTGCTGGGCTTGTGTTGACCAGATAATCAGCAGTCAGTAGTTGATATTACTGTTGAATAGATTAGTTGGAGATGCAATGGCCATGGAGCTACCCAACGAACAGATTATGACAAGGAAAAGCTGATATCATGCTTACATCTGAGTTAAAAGGTGAAAGCAATCTAGTGAGGATCATATTCAATCTGATGTGAGAAAAAATATGTTTATTAATGTCTGCTTGCATGGCCGATATTTGGCATCATCTTGTATCCTTGCCCGTATAAGACAGTTGGGAAGGCGAAAAGGGGCTACTATGTCAACAAGCAGGCAAGAGGAGATCGGGGATGTAGATTGGTGGTGAAGCAAAGTGTTACTAGAACAATTTCATTTTTGTCACATTGCACAATCCAAATGCAGTGATTACAGGATGATCCTGAATGCATTTCCCATCTAAGAAATAGCCTGAAAATGTCTTCATGATTATTACTCCATAAGAGTTCTAATATAAAGCAGTTAGAACAAATGTCAAGGAAAACATTCAAAATTACATGCTGGATCTAAGGTTTCCTAAGAACTAGAAAAATGACAAATTTTTTCCTTTTATGACTTACAAGATAATTAAACTAAAGGTCCTTCTAACAAGCTGGAATAACCTAAGATGTGAATTTATGATTTTAGGACCAACATGAGCTTTCCCTTATTGTAATAGAGATCTGGTGGAATTATGCTGACCTTCTTTTAGGAAAAAGACTTAGCTTTTAGTACATAGCTTTCTGAGTTGGTAGAGGCTAATGCTTGCTGCCTTCATTCAGAGAGAAATGACTCTCTCTATTAAAGGATAAATATCTCTAGTTCTAGAAAACAGCCCAAAGGAAAATTTTATATTGCTAGGTCAGTCATCACTGCCGAATTCAGGAGTGGGTTTATTTTACCACAAGTATTCGAAATTCAAACCTATCACAATCCTTTGAAATTTAATATCAGAAAGTAATAGCTCTTGACTTATCTTAATGCTTCAAATTTCTTTGAAGTATACCTTTCGCCTCAAGGTTGAATTTAAAAACTGCAGAATACTAGCTAAAACATTTCTTTATTTAACACTATATGTTACTTTTAATGAGGTTTTGGGTGTTTTTAAACATGTGAATAATCAGATTGAGTTCCCTTTATAGTGCTTGTACTTTTTCATTCTCATTGCAGTTTTGACGTTAAGTAAATTTCACACAGGACACTGACTGCTCCAGTGACGCTAATCAAATGTTTGAGGTCTATCAAGGAGCATGCC-TTTTGTGCATCGGAGTATCC</genome_strand>
        <mrna_strand>AGTAATATAAAAGAGTACTACTCAACGCATAACGAAAAAGTGTAAATTTGTTAACACGACGATCGGATCCTGCCTGAGCAAAAACGAAATCGTTTTCCGTTAGGGTGACAATGTCGAAACAAACGTACAAAGTCGGATTTTTTTTCCGGCGGCAGTTCACCATGGCTGCCGCGGAAGCTCCGGCGGACATTAAGAGCCTATTTAAACGTTATTCCGACGACAGCGGAGTTATGAGCGTCCAGAATCTTCATAGTTTCTTAATTGAGATCCAGAAGGAGAAAAATGTTAGCTTAGAGAACGCAGAAGCCATTATCAATAATCACGGCGGCGACTCCAAGCAGAAAGGCCTCCAGCTCGATGGCTTCTTCAAGTTTCTCTTTTCTGATGTTAATCCTCCTCTCGATCCTAAACTTGGG............................................................................................................................................................................................................................................................................................................................................................................ATTCACCATGATATGACTGCACCTCTGTCTCATTACTACATATACACAGGCCATAATTCATATTTAACTGGGAATCAACTGAGTAGTGATTGCAGTGATGTTCCCATAATACAAGCTCTTCAGAGAAGTGTTAGAGTAATTGAATTAGATATTTGGCCAAATTCAGACAAAGATGATATAGAAGTTCTACATGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACTGACTGCTCCAGTGACGCTAATCNAATGTTTGAGGTCTATNCAGGAGCATGCCTTTTTGTGCATCGGAGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326074" ref_strand="+" ref_description="SGN-U326074        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoinositide-specific phospholipase C family protein, contains Pfam profile: PF00388 phosphatidylinositol-specific phospholipase C | chr2:16758792-16761613 FORWARD | Aliases: None(evalue: 1e-97, score=353) genbank/nr: gi|56694217|gb|AAW22879.1| putative phospholipase C [Lycopersicon esculentum] (evalue: 8e-162, score=572)">
      <seq>ttattacagaatgtttgggtgtttcaaccgtaaatttaagatcagggagagggagccaccgccggatgtgaggaatgcgtttttccggtacaccggtaaagctaaccagatgaatgcggatcaactttttcggtatctggtggaggtacaaggagaagaagaatgcactattaaggatgcggagcaaattatacagaatgttgctagccggaggcaccatctcatcagacgccttaaccattcacttgaactcgatgatttctttttttatctttttcaggatgatctcaatggagcaatcaaatctcaggtgcaccatgacatgactgctccattgcaacattatttcatctatacaggtcacaattcctacctaactggaaatcaactcagcagcgattgtagtgaaattcctatagttaaggctctagaaagaggtgtccgcggaatagaacttgatttatggccaaactcagggaaagataatattcatgttcttcatggaaggaccctgactacaccagttccacttcttaaatgcttaaaggccattagagaccacgctttttttaaatccccttatcctgtcataatcacattggaagaccacctgacaccagatcttcaagctaaagttgcagagatggttatccaaatctttggagaaatgttatattatcctcaatcggaatgcttagatgaatttccttcacctgaagagcttaagaatcgcattattctttctacaaaaccacccaaagagtaccttgagtcaaagaatcagagagatacatctccagtgggaaaagattcatttagagaggaccttttgaagaaggagaaatcagaaattggtgccgaggatcatgacactgatgaaaggagtgacagtgatcaagatgatgaagacggtgatacctccacctccaacgatcagcaatcatcccaaccagaagcacctaagtacaagagtctgatagcagttcacgctgggaaggcaaaacatggtttgaaacgtgcactaagagaggaaagtaataaagtcagtcgacttagtttgagtgaacaagaagttgtaagagctgcagaatattatggaactgatttggttaggttcacacagaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11044" stop="8807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10744" g_stop="10435" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10434" i_stop="10355" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10354" g_stop="10158" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="507" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10157" i_stop="9897" i_length="261">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9896" g_stop="9761" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="643" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9674" g_stop="9435" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="883" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9347" g_stop="9118" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="884" r_stop="1113" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9117" i_stop="9023" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9022" g_stop="9006" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1114" r_stop="1130" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U326074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1130</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10744" e_stop="10435"/>
          <exon e_start="10354" e_stop="10158"/>
          <exon e_start="9896" e_stop="9761"/>
          <exon e_start="9674" e_stop="9435"/>
          <exon e_start="9347" e_stop="9118"/>
          <exon e_start="9022" e_stop="9006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAGGTTCTTCTTCCTCTTTTTTTATTGTTCTATGTCATTCTCAATGGTTAATTTATTTAATTTGTTCGTCATCGTCGTTCCAGGTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAGGTACAATTAATATGCTCCACATTCTAGCACTGTTTAACATTATAGCAACTTAAATACAAAGGGAAGAAGTAGCGTCTCTTCAGTCTTCGATTATCAATCTTAAGTAGTATTTCTTATTCAATAAATCTGTGTTATCGAACGTATTGTTCAAAGTAACTAAGCATTTCTTATGCTCTCTGATGTCCAGTGTCTAAAGTTCCTAAAGATTGACTGGTTGATTAATTAACTTTGTTGAATGATTCCAGTTCTAATCATTTGCAGGACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAGGTGAGAATTCATATATTGTTGTGGATAACTGCCAGAAATATTTCATGTTCCTATTTAATCTAGTTTTAACTCCTTTGTATCTCTAGATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGGGTAAAATGACATTAAATGGTCTCTTGATTTTCTTATTGTGAGATGCTGATCTACTTTTATGTGCCCTTTTTCTTATCTGGACACTAGAGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAGGTACTCCACAATTTTGTGCATATAAAATGGAATGATTGAGGAGAATGCTCTAGCTCTTCTTGACTGAGTTTCCTCTTCGTTCTTTCATTTGCTAGGTTCACACAGAAAAATA</genome_strand>
        <mrna_strand>TTATTACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAG................................................................................GTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAG.....................................................................................................................................................................................................................................................................GACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAG......................................................................................ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGG.......................................................................................AGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAG...............................................................................................GTTCACACAGAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324490" ref_strand="+" ref_description="SGN-U324490        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT2G29960.1 | Symbol: None | peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP5) / rotamase, identical to cyclophilin (Arabidopsis thaliana) gi:2443755:gb:AAB71401 | chr2:12776134-12777656 REVERSE | Aliases: F23F1.12, F23F1_12 (evalue: 7e-76, score=280) genbank/nr: gi|56694218|gb|AAW22880.1| putative cyclophilin [Lycopersicon esculentum] (evalue: 5e-110, score=400)">
      <seq>tggatcagttccgacctagagtgaagacttccggaggaaaagaaaatggcgaacagaaacaaattatctccttcccttgttgtctgggttctagttttattcggaaccctaattttcattctgaaccgattaggtgattcaggagtctcctcagatggtaaagacattaaaatcgaggcaaaaacatcagaggatttggagcgggtgacgcataaagtatactttgatgtcgaaattaatggaaaacctactggtcgtattgtcatgggcctctttgggaaaactgtcccaaagacagcagaaaacttcagagctctttgcacaggggaaaaaggaacagggaaagctggcaagcctctccattacaaaggtagcagtttccacaggatcataccaagcttcatgatccagggaggtgacttcacccgtggtgatgggcgaggtggagagtcaatatatggtgaaagctttccagatgaaaactttgatctaaaacacactgaacctggtatcttgtcaatggcaaatgctggaccagacaccaatggatctcaattctttatcacaactgtaacgactagctggttggacaaacatcatgttgttttcggcaaggtgctgtctgggatggatgttgtccacaaaattgaagctgaaggcagacaaagtggaaccccgaaaagcaaagttagaataacaaatagtggagatctgcctcagtgattcaattttccatgtatcagaatacatcaaatgcttgaaagtgcttaacctcacgctaaagccaggttcatacactgtcaagaaatgttcaatgggactttcgctgcttgtaaagttaaaacaaccctcgtgaaacaagatcacaactgctgcgtagaatagacacaaggatcattttatgaaaattgtaataaacctttgcttttatatttattttcgtaaaggattttgaatgaattctctgntgtatgtaccatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20031" stop="25243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20331" g_stop="20453" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20534" g_stop="20587" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="177" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20684" g_stop="20759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="253" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22730" g_stop="22777" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22878" g_stop="22901" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="325" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24063" g_stop="24245" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="508" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24372" g_stop="24447" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="584" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24545" g_stop="24943" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="982" r_length="398" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-U324490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>983</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20331" e_stop="20453"/>
          <exon e_start="20534" e_stop="20587"/>
          <exon e_start="20684" e_stop="20759"/>
          <exon e_start="22730" e_stop="22777"/>
          <exon e_start="22878" e_stop="22901"/>
          <exon e_start="24063" e_stop="24245"/>
          <exon e_start="24372" e_stop="24447"/>
          <exon e_start="24545" e_stop="24943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAGTTCCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTGGTATTTTCCCCAACCCTTTCTCTTTCTGACTTGTTCTCTTCTACTACTAACATTACTTGTCTTGTTAATTGTATTCTCAGAACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAGGTTCAATTTTGGGTTTTACACGTTACACATTAGTATTTTGTTGACTCCGAACCATAGGATTTCGTATTATTATTGATTGCATAATTTTTACTTCAGGCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTGGTATTTTTTCTTCAAGTTTACTGTTTGTTGAGAATAATGTAGAGTTGTAGGTGATTTTGTTTTGTTCTTGGAAAGAAGAAAAAATTCCGAATGTAGATGCTAGATCATACTTTTCTGTCTATGTTCCTGTTCTAATAGATGGATTGATTTGATAACTGAACAGTGGAAGCTAAGCTTTACCCCTGGCATGTACTCTTCTAATTATACCGGTGGTTTTTACTCTTGGACTTCTCTCTTTTTTCATGTCTGACCAGAAAGAAAAAGGAAAACAGAAGTTTGAGAAATGAACGAGGTAGCTTTTATGTTTAAATGGTTAGGGCAATGTTTTAAGATTTCTTATTAGAACAGGGTAAGAAATGCATCACAATTTCACTCACCACGTACATAATAGAAGATGGAATTTTCATCATTACTTAGTAGAAATTTTTACTCCAAATTGGTTCCCACATTTCCCAATTTCTCATTCATTCTTATTTCCCCATTCACACCTTGCTTAAACCCAACAATGTTAAAGTTGTACCCTCTTCAAGATGGGAGTTCAGTTAGCCTTCATGTCCATGGATGTTTAGTTGGTTACATCAATAGAGGTATCCTTGCACAAAATTAATATAAAAACAAAAGTCACATAAGAAACATATTGGTGCACAAAATAATATAGTGCTTGGCAGGCTGCATAAATAATCTCGCTCAACTTATACAAAGTTTGGTTGACAGTATTAAACTTAATACACACGTAATTATGAGGGAATCTATGTATTATTTTATGGATACATAACGTGGAATAAGAATATATGTATTAGCAATGCATAAAGATCTCAATACAAAAATATCTTAAAGTAGGTAACCTGCATAACATTTCATATTTTAGTAATCATGCATAACAATTCAAAAAATGACATATAAAGTGTTAATCCCTCAAGTGAGGTTTGGGAGGGTGGCGTGTTCGCAGCCTTATGCCTACCTAGTTAAGTAATGCATATCATAAGTCGAGTATGTAAAGAAAATACAATGATGATAAGAGGATTTCATACTAACAGTTCCCGTGATATTATTTATTGTATGAAAGATTCATGCTTAATAATTCCTTCATGACTACATGAATCAAACAACTTTGCACTGTTTTATGATAACAAATATGAACAATCTACCCTTGCTCCTGTCGAAATAATGTATCTCGTTTTCAAATGAATGTTATCTAGTTGTTACATTACTCACTGGCAATCTATGTTGCCTTTCAAATTTTATTTCATGACTAAGTACAAAAGTAATTAGGAAATTTGCATTTACAATGTATTGAAGAAATCCAATTAGATTAATGAAAAGATATTAGCTTGCATGTTGAATTATGGATGTAGTAGAATCATGGTGATGCATTGGATAAATTAGGACTTTTGGTCAAATTAGCTTGCAACCATATGGGGTTGGAAGTTGTCACTAAAGATGTGTTTGGTATGAAGGAAACATTTTTGAGTTAGATTCTTTTTTTAAAAAATGTTTTCCTCGAAAGTAATTCTTACTCAATTTCTTGTGTTTAGCAATTAAGTAGAAAATATTGTTTCAAAAACATTTATGTATAATCTAGGCAAACACTATAAGGGTAGGGGGTAGGTGAGGGTGCGGGTGGGGAGGAGACAATCAAATGTCACTTATGAAACTTGTTTTCCTTACTTTCACCAGGGAAGTCATTTTCCTTATCTATGAGGAACTTGTTTTTCTTGAGAAAATGTTTTTACAAAATTGTGACCCTGGCCAGTTTAAGGGCCGCATATGTGTTCGGCTTAGGTTTTTTGTTCTTACCATGTTTTATTCATAAGACATATAATTCTAGATAAATCTAATTTAGTTTGAGGCAGGATTGTTAAAGATTGTCAGATCTATTTCAGTTGTAGTCATAGGTGGAAGAGTTTCTTGTGATTTGTTTTGGTTTTCTTCTGAACTTAATCTTGAACACATTGATACTTCTCTTTCAGGTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAGGTACTCCATCTTGTGCTGAATTATGTTGGCTCTTTTTGTCTTTGGACATTATCTGGTAAACTACAATGATGAACTTGCTGTATATTTATTTTTTCTGCAGAAAACTTCAGAGCTCTTTGCACAGGTAACCAATAAACTTTTGTTCCTTGAGTTCCATCTTTTCAAGAGTTTCATATCCAATACAGTACTTTTTATTTGAACATCATGTTAATGAGGATACCATTCTGGAAATTCTTATAAATTTGTGCTCTTGGATAACGAGACTTACTTTAGAAGTGAACCAGCAATTTAAAGCAATACCAAAGCTAGTTACAGTTTATTGACAAAAAAATAACTGAAGATTTCTTTCATTACGCGTGAGGTTGAATGAGAACTCCTATACTGTATGAGGTCGTTTGGTAAGAGTGTGTATAAGAATAATGCTAAATAGAGTGTGTTAGTAATGTTTGTATTAGCAATGCATGTAGTAGTTATGCTTGGATTAATTTTGCATAGATTATTTTTATGCATTGTTTGGTTTGATACATTATAAATAGCATGCATTGCAATAAAAAAATTATATACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTAAAAAATGGTGTTGAGGGGGGCAATTGAATCTTTAATCATGCTTAGTGCAAGCATTAAAACCACTGCATTGCTAATACCTAGAAAACCATGGTATTAGCTATACACACTTGAACACACAATAGAGTGTAACATTAGTTATACTTTGGTTAGAAAAGTGTACTAAACAAGGTCAATACACAAGGCTAACGCAGGCATTATTTTTCCTAATACACTCTACCAAACGACCCCTAAAGGATTAAACTCATGTCCATCTTGTAGCCTGTAAGGTATGTTGGAGCCAAAAGCAGATATTTCTAATTGGCACAGGTCATTGCTGATGCAAGGGCCGGCCAACATGCTCTTTCTTCCTTGAGTGGTTTGTTTGAAGACACACATCTAGATTTGCATGAGGTTTTTTTTTTTGTTATCTATTTGTTTCTATGAAGGCCCCTTTAGCATTCATCTTCTCCTAAATTTCTGTTCTAGACATGAATGGTTTCAGAGTTCAGATACTACTTGTTAGCTATTTAGGGAGGGGCGGGGGTGTCTCATGGCTAGAATAAGATCAGACAAGGAGGGTTGTATAGATGGAAAATTAATGCATAAACATGATGAAGCCTCACCAGCTTTCTACTGCATTAACATCCACTATGCACACTAATACTGAAGTTACAAATATGGCAAACATTTATCACTCAACTTGTAGGGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTGGTGAGATTTAACTATTCATTAGTAATTGGTTGTTGCTGTCTTTTGTGTTTTATTTGATCTTGCACTTTGGAAGTGTTTTTGGCCACACTGGTTTTTTATCCACTGAAAGACTTGTTTTGGGAAAAGGTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTGGTACTCAACTAAGTTACTGATTTTGTGCAACTTATCTTCAACTCAACTTTCAATTTTGGGCCACTTCTCAAAATGTTTACTTCCATCCCATGTTTAGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATCAGAATACATCAAATGCTTGAAAGTGCTTAACCTCACGCTAAAGCCAGGTTCATACACTGTCAAGAAATGTTCAATGGGACTTTCGCTGCTTGTAAAGTTAAAACAACCCTCGTGAAACAAGATCACAACTGCTGCGTAGAATAGACACAAGGATCATTTTATGAAAATTGTAATAAAACCTTTGCTTTTATATTTATTTTCGTAAAGGATTTTGAATGAATTCTCTGTTGTATGTACCATAG</genome_strand>
        <mrna_strand>TGGATCAGTTCCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG................................................................................AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG................................................................................................GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG....................................................................................................AAAACTTCAGAGCTCTTTGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG..............................................................................................................................GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG.................................................................................................GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATCAGAATACATCAAATGCTTGAAAGTGCTTAACCTCACGCTAAAGCCAGGTTCATACACTGTCAAGAAATGTTCAATGGGACTTTCGCTGCTTGTAAAGTTAAAACAACCCTCGTGAAACAAGATCACAACTGCTGCGTAGAATAGACACAAGGATCATTTTATGAAAATTGTAAT-AAACCTTTGCTTTTATATTTATTTTCGTAAAGGATTTTGAATGAATTCTCTGNTGTATGTACCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323327" ref_strand="+" ref_description="SGN-U323327        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:16741372-16741990 REVERSE | Aliases: T28M21.24, T28M21_24(evalue: 1e-24, score=110) genbank/nr: gi|56694219|gb|AAW22881.1| putative EARLY flowering 4 protein [Lycopersicon esculentum] (evalue: 2e-57, score=225)">
      <seq>tttctaatttcttacattttggccaaacaaatggtgtcgcgtgaataagcactgccaagccaaaccatggttagtcatctctgtacaaccccaccaaatgaggaaaatatctaatctatgtatgtatgcacctcacctccccagagactagagagaaagcgtctgtgcgtgtttctctcatgtacgtttatgattgaatcgacattaggagcatggaagacacctttaagcgccaccgtcaaaccctagccaaacctcaatccctcaccactgacgaccgccgccgccctcgtgacctcagtacagaggaaggcaactccgatgtgtggaacaacttctccaacagattccggcaggtgcaatcggtgttggatcggaacagatcgttgatacagcaagtcaacgaaaatcatcagtcgagaacgactgacaatatggtgcggaatgtgagcctgattcaggagcttaatggcaacatttctaaagtagtttctctctattctgatatttctaccaatttttcaaccatgtttcgtcaaggaaacgacttcattggagacgacaccaacaaccactgatgcttttctcttctccagtctagtttataacatcctcagtaataatgccctaagaggtgcaaattgttttacaactgagttgatgttgctgtgaaatcgagtactcttaatatactcgaatttatctttaactttttgggtcatagcgtgtgtgtgtatttcataagcatgtttgtattaaattactgagaacaaattggaaatttcaacaacgtatctttctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26045" stop="24641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25745" g_stop="24941" g_length="805"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U323327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25745" e_stop="24941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAATTTCTTACATTTTGGCCAAACAAATGGTGTCGCGTGAATAAGCACTGCCAAGCCAAACCATGGTTAGTCATCTCTGTACAACCCCACCAAATGAGGAAAATATCTAATCTATGTATGTATGCACCTCACCTCCCCAGAGACTAGAGAGAAAGCGTCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTA</genome_strand>
        <mrna_strand>TTTCTAATTTCTTACATTTTGGCCAAACAAATGGTGTCGCGTGAATAAGCACTGCCAAGCCAAACCATGGTTAGTCATCTCTGTACAACCCCACCAAATGAGGAAAATATCTAATCTATGTATGTATGCACCTCACCTCCCCAGAGACTAGAGAGAAAGCGTCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328874" ref_strand="+" ref_description="SGN-U328874        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:16741372-16741990 REVERSE | Aliases: T28M21.24, T28M21_24(evalue: 2e-25, score=112) genbank/nr: gi|56694219|gb|AAW22881.1| putative EARLY flowering 4 protein [Lycopersicon esculentum] (evalue: 3e-32, score=140)">
      <seq>aattcttttaatttttcatatatcaatggaagacacctctaacttcaatcgccatcgtcaaaccataaccaaatcaaactctcgtaagataaataataatcgccatcgcgttcgtgacaactctaccgtggattttaacatggaggaaggtgattcttctgagatgtggaacaatttttccaacaattttaggcaagtgcagtctgtgttggatcgaaatagattgttgattcaacaagttaacgagaatcatcaatcgagaacacacgatagcatggtgcagaacgtgagcttaattcaagaactcaatggaaacatatcaaaggtttcgtctatatattctgatttcaacactgacttcacaaacatgattcatcaacggaagaatgatgtttgagattgactatcaatctgcagtgcttctacgtataataaacttttcaagtatattattatcaattaagctgcaagttgtaattttacaacatgatatgatgtttcttttctatctccaaatttcatatgaaatcaaatatattatgttggcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42283" stop="41111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41983" g_stop="41431" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="592"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U328874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41983" e_stop="41431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATTTA</genome_strand>
        <mrna_strand>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322792" ref_strand="+" ref_description="SGN-U322792        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: gi|15144516|gb|AAK84483.1| putative copia-like polyprotein [Lycopersicon esculentum](evalue: 2e-16, score=90.1)">
      <seq>cagagtttatgatacgccgaaagcgtaatagaccaattgattccaaatataaaattccttaaagaaggaaggagcaaatgatcaatatggtcatgataatgaggcaagtgctataaaggagcacattgacataacacttcataaaatcttgaaaaaggttcaggtacctgaaataatgaaaaaaattgaagagatctcgataagttatgtcttgttggaatcgatatcaaataaccgtcgacggtatctttgatatgaggtagcgctcaatgatataaattgtgatgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46747" stop="48437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47047" g_stop="48137" g_length="1091"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1099" r_length="1099" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-U322792" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>1091</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47047" e_stop="48137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTTATAATACGCCGGAAGCGTAATTGACCAATCGATTCCAAATATGAAATTCCTTGAAGAAGGAAGGAGCAAATGATCAATGTGGTCATGATAATGAGGCAAGTGCTATAAAAGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATG--AAAAA-TGAAGACATCCCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCATCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGACGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTGTGCCTT-GGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAA-CTTGAATGC----AATGAAT-ATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTACAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>CAGAGTTTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAGGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAAAATTGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG--AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62318" stop="63204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62618" g_stop="62904" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62618" e_stop="62904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGG-AAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63643" stop="62611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63343" g_stop="62911" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63343" e_stop="62911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATTCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62678" stop="63831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62978" g_stop="63531" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62978" e_stop="63531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGAATTGTCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGATCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCCTGTAATGACAAGTGATCAACATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGAAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGACCTCGTTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64718" stop="62682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64418" g_stop="62982" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64418" e_stop="62982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGTCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTTCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATTCCTCATTCTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63305" stop="65313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63605" g_stop="63791" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63792" i_stop="64535" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64536" g_stop="65049" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63605" e_stop="63791"/>
          <exon e_start="64536" e_stop="65049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACTCCACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGATTGACTCTAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGTTTTCCCTAGGCGGTCTGAAGCGGAGGCATCTGATGTTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTACTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTTATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGTTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAAAGCTAAAACGGTGACGTTAGCCAAGCCTGGAATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCTGCATCGTCTCCTTTCTTCGTGATAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64722" stop="63564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64422" g_stop="63864" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64422" e_stop="63864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65332" stop="63975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65032" g_stop="64275" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65032" e_stop="64275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTATCACGAAGAAAGGAGACGATGCAGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATTCCAGGCTTGGCTAACGTCACCGTTTTAGCTTTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAAACAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65921" stop="64609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65621" g_stop="64909" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65621" e_stop="64909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67401" stop="66624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67101" g_stop="66925" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67101" e_stop="66925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAACGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343095" ref_strand="-" ref_description="SGN-U343095        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains Pfam profiles PF03108: MuDR family transposase, PF04434: SWIM zinc finger | chr1:23851419-23853578 FORWARD | Aliases: F22C12.28, F22C12_28(evalue: 5e-07, score=52) genbank/nr: putative(evalue: 3e-41, score=171)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="+" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84582" stop="85699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84881" g_stop="85399" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="+" ref_id="SGN-U343095" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84881" e_stop="85399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACTAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342680" ref_strand="+" ref_description="SGN-U342680        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-19, score=97.4)">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89082" stop="87583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88790" g_stop="88510" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88509" i_stop="88308" i_length="202">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88307" g_stop="88185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88184" i_stop="88102" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88101" g_stop="87883" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U342680" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88790" e_stop="88510"/>
          <exon e_start="88307" e_stop="88185"/>
          <exon e_start="88101" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTTACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCAATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAGGTAATGTTTATGATACAGTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTTCTCATTTTATATTCTGTCATGTATCATTCATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG..........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316744" ref_strand="+" ref_description="SGN-U316744        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>atctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactagggcataagttaataaataatactatatctagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacttttgttccacaagttggagatggaatattcccaacttagaataacatatcaccgtgtaattgctcctttggtaaagatatctgtcctttgatccttgcttgctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94997" stop="94053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94697" g_stop="94354" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="364"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U316744" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94697" e_stop="94354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTTGCTTGCT</genome_strand>
        <mrna_strand>ATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGGCATAAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTAGAATAACATATCACCGTGTAATTGCTCCTTTGGTAAAGATATCTGTCCTTTGATCCTTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335807" ref_strand="-" ref_description="SGN-U335807        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctaaattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactaggcctttagttaataaataatactatatctagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacttttgttccacaagttggagatggaatattcccaacttacaataacatatcaccgtgtaattgctcctttggtaaatatatctgtcctttgatccttgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94971" stop="94060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94671" g_stop="94361" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="335"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U335807" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94671" e_stop="94361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTT</genome_strand>
        <mrna_strand>TTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTAAATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316745" ref_strand="+" ref_description="SGN-U316745        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | GDSL-motif lipase/hydrolase family protein, contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr3:3510669-3513066 REVERSE | Aliases: F11B9.13(evalue: 6e-112, score=400) genbank/nr: Lipolytic(evalue: 1e-115, score=419)">
      <seq>tttgaattgaatggagtaatacaaaagaggggaaaattgaaagatgaggttataacaaggaagggaagagaagagaagagaagagaataagggtttcggtgaatcgaggatggttggaccacagagaccacagttcgttctctttggatcctctattgttcagatcagttacagcaatggcggttggggcgctattctctccgacatttatgcccgcaaagcggacatattattgcgaggttactatggttggaactcaagacgtgctatacaggtccttgatcaagtgtttccaaaggatgcaactgttcagcctacattggtgattgtttactttggtggtaatgattcaatgggacctcattcatctggattgggtcctcatgtacctcttccagagtacattgagaacatgagaaaaattgcaactcatctcaagagcatctcagagaatattcgcataatttttctcagttgtccacctgttgacgaggccagaattcgtgaaaatacaagtgcatatttcagtgagttggttcgaacaaatgaattgtgtcgacagtattctgaggcctgtatagagctatgcaaagagatgaatctgaaggttgttgatctttggacagcacttcagaaaagaaaagattggttgactgcttgttttacggatgggattcacttagcggaggaggggagtaaaatagttgttgaagagatcctcaaggtgttgaaggaagctgagtggacacctagtttacactggaaatcaatggcaacagaatttcgtgaagattctccttgtgatttggttttagcagatggtaaaaccacaataaacccatctgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaatgtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaattactcttggcccaactagggcataagttaataaataatactatatctagtgtttgtaattatgtgattgtatcttctattttaggatggacaatgtagcacaaaggttccacaagttggagatggaatattcccaacttttaaaaggatatcacccgtgtaattgctcctttggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98603" stop="94078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98303" g_stop="98084" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96902" g_stop="96825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="298" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96429" g_stop="96289" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="439" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95875" g_stop="95799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="516" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="666" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94871" g_stop="94387" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="1152" r_length="486" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1155" polyA_stop="1170"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U316745" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1151</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98303" e_stop="98084"/>
          <exon e_start="96902" e_stop="96825"/>
          <exon e_start="96429" e_stop="96289"/>
          <exon e_start="95875" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATTGAATGGAGTAATACAAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAAGTATCTTTCTCTCTTTTCTACTATTTGTTTGTTACAACTTCATGTTTTGCTATTTGTTTGTTATTCTGGAAACTATGCTGGGTGGTTGGGGTTACAAAAATAATCAACACTACTGCTTAAACAAACAAGGAACAATATACCAGTTATATTTTAATCATAATGACACAATCAACTATGCTGGTTGCCAAAATGAGTTGTTCTGCATCTTGTTTAGACTCGCATCCTTTTCACAAGTAACCTAGTTGTAGTAATGTCTAAATAATGGAGTTTTCCAAAACTAGTTACTTGCCTATCATTATAACCCTACTACTTCCATACTTAGGGTTCCTTTGGTTGGTATAAATAATCGAAGACTACCTAATACCTCCGACCAAATGGAGGCATTTTATCCCAAGATTATTATACCTTATATCTCACACCTAACGACTCCTAGGTTTAAAGTCATACATATCTTTCCTTTCATCAAGTTTGAAAACCTTCATTGAAATGTTTCTTGTGCTTCTCATCATTCTCACACTTCACTGAATTCCGATATCAATGAGCCAGTGAGAGGTGCCATGTGTTTATAATGAAATAGGTGCTCGCCTTATGGTTCTCAGTCCTCTTTTGCTGAAATGCCTTTTGAAAAGATTTTTTCCTAGCATCGGATATCTTCCTGGAGAGGAAGACTAGTGCCAGATCAAGCATCCTCATTTTCTCTTTACTAGTTTGGAATATTAGGTATCCCTGCTAAATATATTTTTTTTAATTGTTATCATAGGGTCTTGAATGTTAAGTTACACATCTGTTTTTTCTCGGTGTTGGAAACTTAACTTTTCCAGCATTTTCCATTTAGTGATTTTTTTTGATGTTGGAGTAAATTAATCGAGATATAATGGATGAGAGTGTCATTTGATGATGAATCTGATGACTGACATCTGTTTCGTATGTCTTGTTTTGGTATTGGTTCCATGTTACTTGGGGAAATTTGAAGTGCTCTCTTGTTGTGATCTTAAAAGTGCTTGTGTTGAAGTTTTCAGGTTCAACATTTACTGTAAAGTACCTCTTATACAAAGCTTTGTCTCATCACTCATGCACTAACGAATCCTGGCTTAAACTATTAACATCACAGTTCCATTAACTTACGCAGTGAGTCTTGATTTAGTAGAGATTAGAGAGTAATACCTTCTACTATACTGTAGGCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAGGTATTGCATCTTGCTCCCCAATATCTCTGAATGTTCAATTCATGTGAAAGTTTAAGTATAGCTGGTTTGGTTAGACGCTCCCTTTGCCTGATTTCTTCTTTTATTGACAGTTAAAAGACTGATTAATACTGCTGTTTGAACAATCCTTTTCCCCAAGAAATAGTGCTATTTGCGTTAGAACTTATCTTATGCGTTTTGGTTCATATCATCTGACTATCAGAACGTTACCAATGTCTTCTTGGATTTTTATTGTGGAGAGCTTTTAAGAATTCAGAATGTCCTGTAGAAACCTACTTGTGTTTTTTTAAAGATATCTCATCTGGACATCTGATATTGGACGACATTTCCTATATACTAACTTTTGACTTCTTAAAATGGTGTTTTTCGTCTTCCAGGATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTGTTTGCTATTTTTATCTATAAAAATATGAACACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAGGTATCTTATTTTACTACAATAATGTCCTTTTCTTTTGTTTTCGAGCTGCCTTTTTGCTATTTTTATCTATAAAAACATGAACAGTTAGCTGCCTCAAGAGAACATAACGCCTTTAGATACGTAATATTCGAGAGATCTTGAAATTATTTCACTTCGTTATATACATTGGATTTCACTTACTTTAATCAAATTGCAGTAATTATTTTTTTTGAGAAAAAAAATATTAAAAAATACAGTAATTATTGATCCCTGAATTTTTCTTTTTCTTGTTTTCTTTTGGTGGGGGTGGTTAGAGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCA-CCGTGTAATTGCTCCTTTG</genome_strand>
        <mrna_strand>TTTGAATTGAATGGAGTAATACAAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG.......................................................................................................................................TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCGTGAAGATTCTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGGCATAAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACAAAGGTTCCACAAGTTGGAGATGGAATATTCCCAACTTTTAAAAGGATATCACCCGTGTAATTGCTCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335806" ref_strand="-" ref_description="SGN-U335806        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | GDSL-motif lipase/hydrolase family protein, contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr3:3510669-3513066 REVERSE | Aliases: F11B9.13(evalue: 1e-45, score=180) genbank/nr: gi|77552736|gb|ABA95533.1| GDSL-like Lipase/Acylhydrolase, putative [Oryza sativa (japonica cultivar-group)] >gi|62733308|gb|AAX95425.1| GDSL-like Lipase/Acylhydrolase, putative [Oryza sativa (japonica cultivar-group)] >gi|32352168|dbj|BAC78577.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-49, score=198)">
      <seq>gaatattcggataatttttttcagttgtccccctgtgggcgaggcccgaatttgtgaaaatacaagggcatatttcagtgagttggttcgaacaaatgaattgtgttgtccgtattcagaggcctgcatagaggtatgcaaaaagacgaatttgaaggttgttgatctttggccagcccttcagaaaagagaagattggttgactgcttgttttacggatgggattcacttagcgggggaggggagtaaaataattgttgaagagatcctcaaggtgttgaaggaagctgagtggacccctagttttctctggaaatcaatggcaacagaatttcgtgaagattttccttgtgatttggttttagcagatggtaaaaccccaataaacccatttgactggacttaccatcgacaaattcaatgggattagattaaccttcaaacataaagcttcacaaggtatcctatattttcccttttcattcaaatgctaatttgtcacttctttattcataaaatatattgaaaaaaagggtggcccaactagggcataagttaataaatcattataagtttagtgtttgtaatcaaaccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95969" stop="94260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95864" g_stop="95799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.840" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95663" g_stop="95514" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="216" r_length="150" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642">
            <donor d_prob="0.595" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94871" g_stop="94502" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="586" r_length="370" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="613"/>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U335806" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335806" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95864" e_stop="95799"/>
          <exon e_start="95663" e_stop="95514"/>
          <exon e_start="94871" e_stop="94502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAGGTAATTCAATAACCATCATCAATATCATGTTATCTTTTACATTTTTGCTGTACTTATTTCCAAGTTCCATTCTCTGAACTGCATTTTGCCCTTTTTCTGATTAATGAAAAACGTTTTCATCTCCTTTGGAAACAGTGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTACGTAAGTTCAGCTAACTATGTGTTTGTGCAAGTTGTATCTCTACCAAATTGAGAACCTCTGCGATCATTGAACTGTTTCTTTCCTAAAGTTCAGTCAAATTCTTATCTTCTTGTGTTGTTATGAAGATGAAATAAGCTTCCCCTTTTAGTTAATTGGTTTGTCTTTGACTCAAAAGTTCTTTTATAATTATTTATCCCTAAATATTGTTTCTGATTGGTTGGAAAATAAGTTTTGAGATGTTCAGCATTACAACTGAAGATCATGGGAAAATCTTTGTACACTAAATTTGTGGTATTTATTAGCATCACCCACAGAAATTGAACTTCCAGCATTGTCTCATAGCTCTAGTTGTATTTTCTGAATACCTCCTCCAGAAAATACCATGAAATCAGTTTATGGAAGTTCTATATATGGCGTAGCAAGTTGTAGTTGGGATCGAAGTATTTTTTTTCCAGTAGTTTGTTCAAGAATGCTGAGTTATGTTCACTATACTAGTGACAATATCTTTTTGTATCTGATTCCTGACAAGGAATATTGTGTGTCGGTGATTATAGAGCAATCATTTCTCCATTCCCAGTTTCTCATTTTTTCCAGAGGAAACAAGGGCATAGTTTTTGAATTTGTTTGATGTGTTTTATACAGGGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTA</genome_strand>
        <mrna_strand>GAATATTCGGATAATTTTTTTCAGTTGTCCCCCTGTGGGCGAGGCCCGAATTTGTGAAAATACAAG.......................................................................................................................................GGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTTGTCCGTATTCAGAGGCCTGCATAGAGGTATGCAAAAAGACGAATTTGAAGGTTGTTGATCTTTGGCCAGCCCTTCAGAAAAGAGAAGATTGGTTGACTGCTTGTTTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGATTCACTTAGCGGGGGAGGGGAGTAAAATAATTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCTGAGTGGACCCCTAGTTTTCTCTGGAAATCAATGGCAACAGAATTTCGTGAAGATTTTCCTTGTGATTTGGTTTTAGCAGATGGTAAAACCCCAATAAACCCATTTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAAGGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAAAAAAGGGTGGCCCAACTAGGGCATAAGTTAATAAATCATTATAAGTTTAGTGTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332560" ref_strand="+" ref_description="SGN-U332560        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aggccgggtttgcgtaatgcacatagcagtgtggcttttacaacttcagaaagcattgacattgtgaaagcaagtatacttccaattttattggatgtccactaacatagtgaaagcaactaacaatcaggagatgtttgatatggaattttgttcaaaactttctatagaaggtggattcattaattttattttatttttgcaattcttttgtaatatgctgcatttacaaatttttaagcagaatgaacctcttagactaggctagggaagcaaaaatgtttatttggttgtgaatcatcctaggatattaatggtatgttagccataaattgtgcaatttcttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0192J17-jifSO/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0192J17.1" temp_strand="-" temp_description="C06HBa0192J17.1  AC226728.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0192J17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106364" stop="7973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106064" g_stop="105717" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105716" i_stop="103994" i_length="1723">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103993" g_stop="103976" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="366" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0192J17.1" gen_strand="-" ref_id="SGN-U332560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0192J17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106064" e_stop="105717"/>
          <exon e_start="103993" e_stop="103976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTTATGGCAGACTTTTTATCTATCAACTTTTGGAGAATCGCGTTTCGATTACAAACAAGCTTTCAATTCTTGTTCCAAATTTAAGTATATTAGGGGTTGACATTTACTTGAACGATTGCTGATAGTAAAAGTGATACCAGGTTGATTTTCCTCAAGTCACATTATTATACAACCTTCATAAATTTCTCACTTATCCTAGTGAGATTTTACTTTTATCTATCCATCTATAAATTGTCATACTGAGTTAGCATTCCATGTGTAACAAAATGTGTTGAGAAGATGATCTCCAACTTATAATTATAATTTGAATTTCGAATCTAGAGTGAGATCCATCTCGAGAAATTCTCTTATACTCATCCTTTTATGTCATGAATCATACTCTTGAAAGACATGTTAACACCTATATCTCAACTAATAACAAACACCCAATGTCCACAACGGTAACACAATCTCTTTCTATACTTGCAAACCAAAAAAGCAACACCCAGTACCTTTTCAAGAATCAATCTTGAATGAAAATTTTGCAACATACCAATAATCCTCCTTCACCTAGTACCCAAGTCCTGCTTCTAAAGTCAGTTATATTGTACAATCCACCATAAACATACACCAAAATTAATAATACTAACTAGTCTTGTGTAAAGAAAAAGATCCTTAAAGAAGGTGTAAAATAAATATGTGATTGAAGTGTTATATTGGAATACATACAAGTGCAGAAATATTGAGATATTAAATGTGGCAAGGAAAGGTAGTTGAGAATTTTAGATACCTCCATAATCTGCCCCATCCGTGTACTGCTTCTCTTGCAATTAATTACTGCAATAATTAAACAGTTGCCATTTTCCTCATTTCATTTTCCCATTTGGTACAACATTCAACAAACACATTAATGACAAGTGTAAACAGTAGCTCACAAAGACTTTCTCTTTCACCCTTATTTCAATTTTGGTCTTGGTCTGATTTTAAAAGAGTAATTGCTTTCTGAATTCAAATTTAATTTCATTTATGCTTCCTACTTACACTTTAGCAATGAGTATTTGTGACGTATTTAAGATTATAAATTTAAAAAACTTATAGAAAATTTCATGAAACATTGAATTTTCATAATACTTTTCATGCTTGTTGAGGTGTTTCATAATTTTTACGAAAAGAAGATTAGGATATAAATTAGACTTTACTTTTCATTTTTTCCCTTATTAATTATTATCAAATTAATTTTTAGAATAATTCAAAGCAATTAAAGTTTCTTGAATTCATCCCATCGAAAATCTAAATGAAGAGTAAACATTGAAAAATATTTTAAAAATAGTCTTGAAAGTTGTACAATTAAGTTAATTTTAAAATATGAAAAATGTCTCAACTCTCAACAATTCAATTATTTGAAACAAAGGGAGTAGTATTGTTTTTTTAGCTGATGTTCGGAACTTGTATTGGAGCCCAATCCATTTTATATCTCGAATTCAAATTCAAAACTTCAGGCCAAGAATGAAATAGGCGTCCTAAGTATTTCATAGGCATAATACATAAAAATGACCGTAATTTGATTTTAGCGGACAACGACGACTTCTAACGTTGAGTGAGCACAAGTAAGATACATAAATTTATATAAAAATTGAACAAGTAGACACACATGTCTTGCATGACATAATACACGTACGATACAAAATTGTCATATAATATCCATTTACTCTTTTTTATACAAGTGCGCACTTGTTGTAAAATCAAGATTATAAGAAGAAGATAA</genome_strand>
        <mrna_strand>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6745" PGL_stop="3802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6745" e_stop="6330"/>
            <exon e_start="5965" e_stop="5769"/>
            <exon e_start="3879" e_stop="3802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6745" e_stop="6330" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.930">
            <gDNA_intron_boundary i_start="6329" i_stop="5966" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5965" e_stop="5769" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.920">
            <gDNA_intron_boundary i_start="5768" i_stop="3880" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="3879" e_stop="3802" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6745" stop="6330"/>
              <exon start="5965" stop="5769"/>
              <exon start="3879" stop="3802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATATAAAAGAGTACTACTCAACGCATAACGAAAAAGTGTAAATTTGTTAACACGACGATCGGATCCTGCCTGAGCAAAAACGAAATCGTTTTCCGTTAGGGTGACAATGTCGAAACAAACGTACAAAGTCGGATTTTTTTTCCGGCGGCAGTTCACCATGGCTGCCGCGGAAGCTCCGGCGGACATTAAGAGCCTATTTAAACGTTATTCCGACGACAGCGGAGTTATGAGCGTCCAGAATCTTCATAGTTTCTTAATTGAGATCCAGAAGGAGAAAAATGTTAGCTTAGAGAACGCAGAAGCCATTATCAATAATCACGGCGGCGACTCCAAGCAGAAAGGCCTCCAGCTCGATGGCTTCTTCAAGTTTCTCTTTTCTGATGTTAATCCTCCTCTCGATCCTAAACTTGGG : ATTCACCATGATATGACTGCACCTCTGTCTCATTACTACATATACACAGGCCATAATTCATATTTAACTGGGAATCAACTGAGTAGTGATTGCAGTGATGTTCCCATAATACAAGCTCTTCAGAGAAGTGTTAGAGTAATTGAATTAGATATTTGGCCAAATTCAGACAAAGATGATATAGAAGTTCTACATGGAAG : GACACTGACTGCTCCAGTGACGCTAATCAAATGTTTGAGGTCTATCAAGGAGCATGCCTTTTGTGCATCGGAGTATCC</gDNA_template>
            <first_frame> S  N  I  K  E  Y  Y  S  T  H  N  E  K  V  *  I  C  *  H  D  D  R  I  L  P  E  Q  K  R  N  R  F  P  L  G  *  Q  C  R  N  K  R  T  K  S  D  F  F  S  G  G  S  S  P  W  L  P  R  K  L  R  R  T  L  R  A  Y  L  N  V  I  P  T  T  A  E  L  *  A  S  R  I  F  I  V  S  *  L  R  S  R  R  R  K  M  L  A  *  R  T  Q  K  P  L  S  I  I  T  A  A  T  P  S  R  K  A  S  S  S  M  A  S  S  S  F  S  F  L  M  L  I  L  L  S  I  L  N  L  G :   F  T  M  I  *  L  H  L  C  L  I  T  T  Y  T  Q  A  I  I  H  I  *  L  G  I  N  *  V  V  I  A  V  M  F  P  *  Y  K  L  F  R  E  V  L  E  *  L  N  *  I  F  G  Q  I  Q  T  K  M  I  *  K  F  Y  M  E   : G  H  *  L  L  Q  *  R  *  S  N  V  *  G  L  S  R  S  M  P  F  V  H  R  S  I  </first_frame>
            <second_frame>  V  I  *  K  S  T  T  Q  R  I  T  K  K  C  K  F  V  N  T  T  I  G  S  C  L  S  K  N  E  I  V  F  R  *  G  D  N  V  E  T  N  V  Q  S  R  I  F  F  P  A  A  V  H  H  G  C  R  G  S  S  G  G  H  *  E  P  I  *  T  L  F  R  R  Q  R  S  Y  E  R  P  E  S  S  *  F  L  N  *  D  P  E  G  E  K  C  *  L  R  E  R  R  S  H  Y  Q  *  S  R  R  R  L  Q  A  E  R  P  P  A  R  W  L  L  Q  V  S  L  F  *  C  *  S  S  S  R  S  *  T  W   : D  S  P  *  Y  D  C  T  S  V  S  L  L  H  I  H  R  P  *  F  I  F  N  W  E  S  T  E  *  *  L  Q  *  C  S  H  N  T  S  S  S  E  K  C  *  S  N  *  I  R  Y  L  A  K  F  R  Q  R  *  Y  R  S  S  T  W  K  :  D  T  D  C  S  S  D  A  N  Q  M  F  E  V  Y  Q  G  A  C  L  L  C  I  G  V  S </second_frame>
            <third_frame>   *  Y  K  R  V  L  L  N  A  *  R  K  S  V  N  L  L  T  R  R  S  D  P  A  *  A  K  T  K  S  F  S  V  R  V  T  M  S  K  Q  T  Y  K  V  G  F  F  F  R  R  Q  F  T  M  A  A  A  E  A  P  A  D  I  K  S  L  F  K  R  Y  S  D  D  S  G  V  M  S  V  Q  N  L  H  S  F  L  I  E  I  Q  K  E  K  N  V  S  L  E  N  A  E  A  I  I  N  N  H  G  G  D  S  K  Q  K  G  L  Q  L  D  G  F  F  K  F  L  F  S  D  V  N  P  P  L  D  P  K  L  G  :  I  H  H  D  M  T  A  P  L  S  H  Y  Y  I  Y  T  G  H  N  S  Y  L  T  G  N  Q  L  S  S  D  C  S  D  V  P  I  I  Q  A  L  Q  R  S  V  R  V  I  E  L  D  I  W  P  N  S  D  K  D  D  I  E  V  L  H  G  R :   T  L  T  A  P  V  T  L  I  K  C  L  R  S  I  K  E  H  A  F  C  A  S  E  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6668" stop="6330"/>
                    <exon start="5965" stop="5769"/>
                    <exon start="3879" stop="3804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKTKSFSVRVTMSKQTYKVGFFFRRQFTMAAAEAPADIKSLFKRYSDDSGVMSVQNLHSFLIEIQKEKNVSLENAEAIINNHGGDSKQKGLQLDGFFKFLFSDVNPPLDPKLGIHHDMTAPLSHYYIYTGHNSYLTGNQLSSDCSDVPIIQALQRSVRVIELDIWPNSDKDDIEVLHGRTLTAPVTLIKCLRSIKEHAFCASEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10744" PGL_stop="9006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10744" e_stop="10435"/>
            <exon e_start="10354" e_stop="10158"/>
            <exon e_start="9896" e_stop="9761"/>
            <exon e_start="9674" e_stop="9435"/>
            <exon e_start="9347" e_stop="9118"/>
            <exon e_start="9022" e_stop="9006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.576" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10744" e_stop="10435" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10434" i_stop="10355" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10354" e_stop="10158" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10157" i_stop="9897" i_length="261"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9896" e_stop="9761" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.576">
            <gDNA_intron_boundary i_start="9760" i_stop="9675" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9674" e_stop="9435" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="9434" i_stop="9348" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9347" e_stop="9118" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="9117" i_stop="9023" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9022" e_stop="9006" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10744" stop="10435"/>
              <exon start="10354" stop="10158"/>
              <exon start="9896" stop="9761"/>
              <exon start="9674" stop="9435"/>
              <exon start="9347" stop="9118"/>
              <exon start="9022" stop="9006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTACAGAATGTTTGGGTGTTTCAACCGTAAATTTAAGATCAGGGAGAGGGAGCCACCGCCGGATGTGAGGAATGCGTTTTTCCGGTACACCGGTAAAGCTAACCAGATGAATGCGGATCAACTTTTTCGGTATCTGGTGGAGGTACAAGGAGAAGAAGAATGCACTATTAAGGATGCGGAGCAAATTATACAGAATGTTGCTAGCCGGAGGCACCATCTCATCAGACGCCTTAACCATTCACTTGAACTCGATGATTTCTTTTTTTATCTTTTTCAGGATGATCTCAATGGAGCAATCAAATCTCAG : GTGCACCATGACATGACTGCTCCATTGCAACATTATTTCATCTATACAGGTCACAATTCCTACCTAACTGGAAATCAACTCAGCAGCGATTGTAGTGAAATTCCTATAGTTAAGGCTCTAGAAAGAGGTGTCCGCGGAATAGAACTTGATTTATGGCCAAACTCAGGGAAAGATAATATTCATGTTCTTCATGGAAG : GACCCTGACTACACCAGTTCCACTTCTTAAATGCTTAAAGGCCATTAGAGACCACGCTTTTTTTAAATCCCCTTATCCTGTCATAATCACATTGGAAGACCACCTGACACCAGATCTTCAAGCTAAAGTTGCAGAG : ATGGTTATCCAAATCTTTGGAGAAATGTTATATTATCCTCAATCGGAATGCTTAGATGAATTTCCTTCACCTGAAGAGCTTAAGAATCGCATTATTCTTTCTACAAAACCACCCAAAGAGTACCTTGAGTCAAAGAATCAGAGAGATACATCTCCAGTGGGAAAAGATTCATTTAGAGAGGACCTTTTGAAGAAGGAGAAATCAGAAATTGGTGCCGAGGATCATGACACTGATGAAAGG : AGTGACAGTGATCAAGATGATGAAGACGGTGATACCTCCACCTCCAACGATCAGCAATCATCCCAACCAGAAGCACCTAAGTACAAGAGTCTGATAGCAGTTCACGCTGGGAAGGCAAAACATGGTTTGAAACGTGCACTAAGAGAGGAAAGTAATAAAGTCAGTCGACTTAGTTTGAGTGAACAAGAAGTTGTAAGAGCTGCAGAATATTATGGAACTGATTTGGTTAG : GTTCACACAGAAAAATA</gDNA_template>
            <first_frame> L  L  Q  N  V  W  V  F  Q  P  *  I  *  D  Q  G  E  G  A  T  A  G  C  E  E  C  V  F  P  V  H  R  *  S  *  P  D  E  C  G  S  T  F  S  V  S  G  G  G  T  R  R  R  R  M  H  Y  *  G  C  G  A  N  Y  T  E  C  C  *  P  E  A  P  S  H  Q  T  P  *  P  F  T  *  T  R  *  F  L  F  L  S  F  S  G  *  S  Q  W  S  N  Q  I  S   : G  A  P  *  H  D  C  S  I  A  T  L  F  H  L  Y  R  S  Q  F  L  P  N  W  K  S  T  Q  Q  R  L  *  *  N  S  Y  S  *  G  S  R  K  R  C  P  R  N  R  T  *  F  M  A  K  L  R  E  R  *  Y  S  C  S  S  W  K  :  D  P  D  Y  T  S  S  T  S  *  M  L  K  G  H  *  R  P  R  F  F  *  I  P  L  S  C  H  N  H  I  G  R  P  P  D  T  R  S  S  S  *  S  C  R   : D  G  Y  P  N  L  W  R  N  V  I  L  S  S  I  G  M  L  R  *  I  S  F  T  *  R  A  *  E  S  H  Y  S  F  Y  K  T  T  Q  R  V  P  *  V  K  E  S  E  R  Y  I  S  S  G  K  R  F  I  *  R  G  P  F  E  E  G  E  I  R  N  W  C  R  G  S  *  H  *  *  K   : E  *  Q  *  S  R  *  *  R  R  *  Y  L  H  L  Q  R  S  A  I  I  P  T  R  S  T  *  V  Q  E  S  D  S  S  S  R  W  E  G  K  T  W  F  E  T  C  T  K  R  G  K  *  *  S  Q  S  T  *  F  E  *  T  R  S  C  K  S  C  R  I  L  W  N  *  F  G  *  :  V  H  T  E  K   </first_frame>
            <second_frame>  Y  Y  R  M  F  G  C  F  N  R  K  F  K  I  R  E  R  E  P  P  P  D  V  R  N  A  F  F  R  Y  T  G  K  A  N  Q  M  N  A  D  Q  L  F  R  Y  L  V  E  V  Q  G  E  E  E  C  T  I  K  D  A  E  Q  I  I  Q  N  V  A  S  R  R  H  H  L  I  R  R  L  N  H  S  L  E  L  D  D  F  F  F  Y  L  F  Q  D  D  L  N  G  A  I  K  S  Q  :  V  H  H  D  M  T  A  P  L  Q  H  Y  F  I  Y  T  G  H  N  S  Y  L  T  G  N  Q  L  S  S  D  C  S  E  I  P  I  V  K  A  L  E  R  G  V  R  G  I  E  L  D  L  W  P  N  S  G  K  D  N  I  H  V  L  H  G  R :   T  L  T  T  P  V  P  L  L  K  C  L  K  A  I  R  D  H  A  F  F  K  S  P  Y  P  V  I  I  T  L  E  D  H  L  T  P  D  L  Q  A  K  V  A  E  :  M  V  I  Q  I  F  G  E  M  L  Y  Y  P  Q  S  E  C  L  D  E  F  P  S  P  E  E  L  K  N  R  I  I  L  S  T  K  P  P  K  E  Y  L  E  S  K  N  Q  R  D  T  S  P  V  G  K  D  S  F  R  E  D  L  L  K  K  E  K  S  E  I  G  A  E  D  H  D  T  D  E  R  :  S  D  S  D  Q  D  D  E  D  G  D  T  S  T  S  N  D  Q  Q  S  S  Q  P  E  A  P  K  Y  K  S  L  I  A  V  H  A  G  K  A  K  H  G  L  K  R  A  L  R  E  E  S  N  K  V  S  R  L  S  L  S  E  Q  E  V  V  R  A  A  E  Y  Y  G  T  D  L  V  R :   F  T  Q  K  N  </second_frame>
            <third_frame>   I  T  E  C  L  G  V  S  T  V  N  L  R  S  G  R  G  S  H  R  R  M  *  G  M  R  F  S  G  T  P  V  K  L  T  R  *  M  R  I  N  F  F  G  I  W  W  R  Y  K  E  K  K  N  A  L  L  R  M  R  S  K  L  Y  R  M  L  L  A  G  G  T  I  S  S  D  A  L  T  I  H  L  N  S  M  I  S  F  F  I  F  F  R  M  I  S  M  E  Q  S  N  L  R :   C  T  M  T  *  L  L  H  C  N  I  I  S  S  I  Q  V  T  I  P  T  *  L  E  I  N  S  A  A  I  V  V  K  F  L  *  L  R  L  *  K  E  V  S  A  E  *  N  L  I  Y  G  Q  T  Q  G  K  I  I  F  M  F  F  M  E   : G  P  *  L  H  Q  F  H  F  L  N  A  *  R  P  L  E  T  T  L  F  L  N  P  L  I  L  S  *  S  H  W  K  T  T  *  H  Q  I  F  K  L  K  L  Q  R :   W  L  S  K  S  L  E  K  C  Y  I  I  L  N  R  N  A  *  M  N  F  L  H  L  K  S  L  R  I  A  L  F  F  L  Q  N  H  P  K  S  T  L  S  Q  R  I  R  E  I  H  L  Q  W  E  K  I  H  L  E  R  T  F  *  R  R  R  N  Q  K  L  V  P  R  I  M  T  L  M  K  G :   V  T  V  I  K  M  M  K  T  V  I  P  P  P  P  T  I  S  N  H  P  N  Q  K  H  L  S  T  R  V  *  *  Q  F  T  L  G  R  Q  N  M  V  *  N  V  H  *  E  R  K  V  I  K  S  V  D  L  V  *  V  N  K  K  L  *  E  L  Q  N  I  M  E  L  I  W  L   : G  S  H  R  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10743" stop="10435"/>
                    <exon start="10354" stop="10158"/>
                    <exon start="9896" stop="9761"/>
                    <exon start="9674" stop="9435"/>
                    <exon start="9347" stop="9118"/>
                    <exon start="9022" stop="9007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYRMFGCFNRKFKIREREPPPDVRNAFFRYTGKANQMNADQLFRYLVEVQGEEECTIKDAEQIIQNVASRRHHLIRRLNHSLELDDFFFYLFQDDLNGAIKSQVHHDMTAPLQHYFIYTGHNSYLTGNQLSSDCSEIPIVKALERGVRGIELDLWPNSGKDNIHVLHGRTLTTPVPLLKCLKAIRDHAFFKSPYPVIITLEDHLTPDLQAKVAEMVIQIFGEMLYYPQSECLDEFPSPEELKNRIILSTKPPKEYLESKNQRDTSPVGKDSFREDLLKKEKSEIGAEDHDTDERSDSDQDDEDGDTSTSNDQQSSQPEAPKYKSLIAVHAGKAKHGLKRALREESNKVSRLSLSEQEVVRAAEYYGTDLVRFTQKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20331" PGL_stop="24943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20331" e_stop="20453"/>
            <exon e_start="20534" e_stop="20587"/>
            <exon e_start="20684" e_stop="20759"/>
            <exon e_start="22730" e_stop="22777"/>
            <exon e_start="22878" e_stop="22901"/>
            <exon e_start="24063" e_stop="24245"/>
            <exon e_start="24372" e_stop="24447"/>
            <exon e_start="24545" e_stop="24943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20331" e_stop="20453" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20454" i_stop="20533" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20534" e_stop="20587" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20588" i_stop="20683" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20684" e_stop="20759" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.797" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20760" i_stop="22729" i_length="1970"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22730" e_stop="22777" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22778" i_stop="22877" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22878" e_stop="22901" e_length="24"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="22902" i_stop="24062" i_length="1161"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24063" e_stop="24245" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.606">
            <gDNA_intron_boundary i_start="24246" i_stop="24371" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24372" e_stop="24447" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="24448" i_stop="24544" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="24545" e_stop="24943" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20331" stop="20453"/>
              <exon start="20534" stop="20587"/>
              <exon start="20684" stop="20759"/>
              <exon start="22730" stop="22777"/>
              <exon start="22878" stop="22901"/>
              <exon start="24063" stop="24245"/>
              <exon start="24372" stop="24447"/>
              <exon start="24545" stop="24943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCAGTTCCGACCTAGAGTGAAGACTTCCGGAGGAAAAGAAAATGGCGAACAGAAACAAATTATCTCCTTCCCTTGTTGTCTGGGTTCTAGTTTTATTCGGAACCCTAATTTTCATTCTG : AACCGATTAGGTGATTCAGGAGTCTCCTCAGATGGTAAAGACATTAAAATCGAG : GCAAAAACATCAGAGGATTTGGAGCGGGTGACGCATAAAGTATACTTTGATGTCGAAATTAATGGAAAACCTACTG : GTCGTATTGTCATGGGCCTCTTTGGGAAAACTGTCCCAAAGACAGCAG : AAAACTTCAGAGCTCTTTGCACAG : GGGAAAAAGGAACAGGGAAAGCTGGCAAGCCTCTCCATTACAAAGGTAGCAGTTTCCACAGGATCATACCAAGCTTCATGATCCAGGGAGGTGACTTCACCCGTGGTGATGGGCGAGGTGGAGAGTCAATATATGGTGAAAGCTTTCCAGATGAAAACTTTGATCTAAAACACACTGAACCTG : GTATCTTGTCAATGGCAAATGCTGGACCAGACACCAATGGATCTCAATTCTTTATCACAACTGTAACGACTAGCTG : GTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGGATGTTGTCCACAAAATTGAAGCTGAAGGCAGACAAAGTGGAACCCCGAAAAGCAAAGTTAGAATAACAAATAGTGGAGATCTGCCTCAGTGATTCAATTTTCCATGTATCAGAATACATCAAATGCTTGAAAGTGCTTAACCTCACGCTAAAGCCAGGTTCATACACTGTCAAGAAATGTTCAATGGGACTTTCGCTGCTTGTAAAGTTAAAACAACCCTCGTGAAACAAGATCACAACTGCTGCGTAGAATAGACACAAGGATCATTTTATGAAAATTGTAATAAAACCTTTGCTTTTATATTTATTTTCGTAAAGGATTTTGAATGAATTCTCTGTTGTATGTACCATAG</gDNA_template>
            <first_frame> W  I  S  S  D  L  E  *  R  L  P  E  E  K  K  M  A  N  R  N  K  L  S  P  S  L  V  V  W  V  L  V  L  F  G  T  L  I  F  I  L  :  N  R  L  G  D  S  G  V  S  S  D  G  K  D  I  K  I  E  :  A  K  T  S  E  D  L  E  R  V  T  H  K  V  Y  F  D  V  E  I  N  G  K  P  T   : G  R  I  V  M  G  L  F  G  K  T  V  P  K  T  A   : E  N  F  R  A  L  C  T   : G  E  K  G  T  G  K  A  G  K  P  L  H  Y  K  G  S  S  F  H  R  I  I  P  S  F  M  I  Q  G  G  D  F  T  R  G  D  G  R  G  G  E  S  I  Y  G  E  S  F  P  D  E  N  F  D  L  K  H  T  E  P   : G  I  L  S  M  A  N  A  G  P  D  T  N  G  S  Q  F  F  I  T  T  V  T  T  S  W :   L  D  K  H  H  V  V  F  G  K  V  L  S  G  M  D  V  V  H  K  I  E  A  E  G  R  Q  S  G  T  P  K  S  K  V  R  I  T  N  S  G  D  L  P  Q  *  F  N  F  P  C  I  R  I  H  Q  M  L  E  S  A  *  P  H  A  K  A  R  F  I  H  C  Q  E  M  F  N  G  T  F  A  A  C  K  V  K  T  T  L  V  K  Q  D  H  N  C  C  V  E  *  T  Q  G  S  F  Y  E  N  C  N  K  T  F  A  F  I  F  I  F  V  K  D  F  E  *  I  L  C  C  M  Y  H   </first_frame>
            <second_frame>  G  S  V  P  T  *  S  E  D  F  R  R  K  R  K  W  R  T  E  T  N  Y  L  L  P  L  L  S  G  F  *  F  Y  S  E  P  *  F  S  F  * :   T  D  *  V  I  Q  E  S  P  Q  M  V  K  T  L  K  S  R :   Q  K  H  Q  R  I  W  S  G  *  R  I  K  Y  T  L  M  S  K  L  M  E  N  L  L  :  V  V  L  S  W  A  S  L  G  K  L  S  Q  R  Q  Q  :  K  T  S  E  L  F  A  Q  :  G  K  K  E  Q  G  K  L  A  S  L  S  I  T  K  V  A  V  S  T  G  S  Y  Q  A  S  *  S  R  E  V  T  S  P  V  V  M  G  E  V  E  S  Q  Y  M  V  K  A  F  Q  M  K  T  L  I  *  N  T  L  N  L  :  V  S  C  Q  W  Q  M  L  D  Q  T  P  M  D  L  N  S  L  S  Q  L  *  R  L  A   : G  W  T  N  I  M  L  F  S  A  R  C  C  L  G  W  M  L  S  T  K  L  K  L  K  A  D  K  V  E  P  R  K  A  K  L  E  *  Q  I  V  E  I  C  L  S  D  S  I  F  H  V  S  E  Y  I  K  C  L  K  V  L  N  L  T  L  K  P  G  S  Y  T  V  K  K  C  S  M  G  L  S  L  L  V  K  L  K  Q  P  S  *  N  K  I  T  T  A  A  *  N  R  H  K  D  H  F  M  K  I  V  I  K  P  L  L  L  Y  L  F  S  *  R  I  L  N  E  F  S  V  V  C  T  I  </second_frame>
            <third_frame>   D  Q  F  R  P  R  V  K  T  S  G  G  K  E  N  G  E  Q  K  Q  I  I  S  F  P  C  C  L  G  S  S  F  I  R  N  P  N  F  H  S   : E  P  I  R  *  F  R  S  L  L  R  W  *  R  H  *  N  R   : G  K  N  I  R  G  F  G  A  G  D  A  *  S  I  L  *  C  R  N  *  W  K  T  Y  W :   S  Y  C  H  G  P  L  W  E  N  C  P  K  D  S  R :   K  L  Q  S  S  L  H  R :   G  K  R  N  R  E  S  W  Q  A  S  P  L  Q  R  *  Q  F  P  Q  D  H  T  K  L  H  D  P  G  R  *  L  H  P  W  *  W  A  R  W  R  V  N  I  W  *  K  L  S  R  *  K  L  *  S  K  T  H  *  T  W :   Y  L  V  N  G  K  C  W  T  R  H  Q  W  I  S  I  L  Y  H  N  C  N  D  *  L  :  V  G  Q  T  S  C  C  F  R  Q  G  A  V  W  D  G  C  C  P  Q  N  *  S  *  R  Q  T  K  W  N  P  E  K  Q  S  *  N  N  K  *  W  R  S  A  S  V  I  Q  F  S  M  Y  Q  N  T  S  N  A  *  K  C  L  T  S  R  *  S  Q  V  H  T  L  S  R  N  V  Q  W  D  F  R  C  L  *  S  *  N  N  P  R  E  T  R  S  Q  L  L  R  R  I  D  T  R  I  I  L  *  K  L  *  *  N  L  C  F  Y  I  Y  F  R  K  G  F  *  M  N  S  L  L  Y  V  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20355" stop="20453"/>
                    <exon start="20534" stop="20587"/>
                    <exon start="20684" stop="20759"/>
                    <exon start="22730" stop="22777"/>
                    <exon start="22878" stop="22901"/>
                    <exon start="24063" stop="24245"/>
                    <exon start="24372" stop="24447"/>
                    <exon start="24545" stop="24683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLPEEKKMANRNKLSPSLVVWVLVLFGTLIFILNRLGDSGVSSDGKDIKIEAKTSEDLERVTHKVYFDVEINGKPTGRIVMGLFGKTVPKTAENFRALCTGEKGTGKAGKPLHYKGSSFHRIIPSFMIQGGDFTRGDGRGGESIYGESFPDENFDLKHTEPGILSMANAGPDTNGSQFFITTVTTSWLDKHHVVFGKVLSGMDVVHKIEAEGRQSGTPKSKVRITNSGDLPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25745" PGL_stop="24941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25745" e_stop="24941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25745" e_stop="24941" e_length="805"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25745" stop="24941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTAATTTCTTACATTTTGGCCAAACAAATGGTGTCGCGTGAATAAGCACTGCCAAGCCAAACCATGGTTAGTCATCTCTGTACAACCCCACCAAATGAGGAAAATATCTAATCTATGTATGTATGCACCTCACCTCCCCAGAGACTAGAGAGAAAGCGTCTGTGCGTGTTTCTCTCATGTACGTTTATGATTGAATCGACATTAGGAGCATGGAAGACACCTTTAAGCGCCACCGTCAAACCCTAGCCAAACCTCAATCCCTCACCACTGACGACCGCCGCCGCCCTCGTGACCTCAGTACAGAGGAAGGCAACTCCGATGTGTGGAACAACTTCTCCAACAGATTCCGGCAGGTGCAATCGGTGTTGGATCGGAACAGATCGTTGATACAGCAAGTCAACGAAAATCATCAGTCGAGAACGACTGACAATATGGTGCGGAATGTGAGCCTGATTCAGGAGCTTAATGGCAACATTTCTAAAGTAGTTTCTCTCTATTCTGATATTTCTACCAATTTTTCAACCATGTTTCGTCAAGGAAACGACTTCATTGGAGACGACACCAACAACCACTGATGCTTTTCTCTTCTCCAGTCTAGTTTATAACATCCTCAGTAATAATGCCCTAAGAGGTGCAAATTGTTTTACAACTGAGTTGATGTTGCTGTGAAATCGAGTACTCTTAATATACTCGAATTTATCTTTAACTTTTTGGGTCATAGCGTGTGTGTGTATTTCATAAGCATGTTTGTATTAAATTACTGAGAACAAATTGGAAATTTCAACAACGTATCTTTCTCCTA</gDNA_template>
            <first_frame> F  L  I  S  Y  I  L  A  K  Q  M  V  S  R  E  *  A  L  P  S  Q  T  M  V  S  H  L  C  T  T  P  P  N  E  E  N  I  *  S  M  Y  V  C  T  S  P  P  Q  R  L  E  R  K  R  L  C  V  F  L  S  C  T  F  M  I  E  S  T  L  G  A  W  K  T  P  L  S  A  T  V  K  P  *  P  N  L  N  P  S  P  L  T  T  A  A  A  L  V  T  S  V  Q  R  K  A  T  P  M  C  G  T  T  S  P  T  D  S  G  R  C  N  R  C  W  I  G  T  D  R  *  Y  S  K  S  T  K  I  I  S  R  E  R  L  T  I  W  C  G  M  *  A  *  F  R  S  L  M  A  T  F  L  K  *  F  L  S  I  L  I  F  L  P  I  F  Q  P  C  F  V  K  E  T  T  S  L  E  T  T  P  T  T  T  D  A  F  L  F  S  S  L  V  Y  N  I  L  S  N  N  A  L  R  G  A  N  C  F  T  T  E  L  M  L  L  *  N  R  V  L  L  I  Y  S  N  L  S  L  T  F  W  V  I  A  C  V  C  I  S  *  A  C  L  Y  *  I  T  E  N  K  L  E  I  S  T  T  Y  L  S  P  </first_frame>
            <second_frame>  F  *  F  L  T  F  W  P  N  K  W  C  R  V  N  K  H  C  Q  A  K  P  W  L  V  I  S  V  Q  P  H  Q  M  R  K  I  S  N  L  C  M  Y  A  P  H  L  P  R  D  *  R  E  S  V  C  A  C  F  S  H  V  R  L  *  L  N  R  H  *  E  H  G  R  H  L  *  A  P  P  S  N  P  S  Q  T  S  I  P  H  H  *  R  P  P  P  P  S  *  P  Q  Y  R  G  R  Q  L  R  C  V  E  Q  L  L  Q  Q  I  P  A  G  A  I  G  V  G  S  E  Q  I  V  D  T  A  S  Q  R  K  S  S  V  E  N  D  *  Q  Y  G  A  E  C  E  P  D  S  G  A  *  W  Q  H  F  *  S  S  F  S  L  F  *  Y  F  Y  Q  F  F  N  H  V  S  S  R  K  R  L  H  W  R  R  H  Q  Q  P  L  M  L  F  S  S  P  V  *  F  I  T  S  S  V  I  M  P  *  E  V  Q  I  V  L  Q  L  S  *  C  C  C  E  I  E  Y  S  *  Y  T  R  I  Y  L  *  L  F  G  S  *  R  V  C  V  F  H  K  H  V  C  I  K  L  L  R  T  N  W  K  F  Q  Q  R  I  F  L  L </second_frame>
            <third_frame>   S  N  F  L  H  F  G  Q  T  N  G  V  A  *  I  S  T  A  K  P  N  H  G  *  S  S  L  Y  N  P  T  K  *  G  K  Y  L  I  Y  V  C  M  H  L  T  S  P  E  T  R  E  K  A  S  V  R  V  S  L  M  Y  V  Y  D  *  I  D  I  R  S  M  E  D  T  F  K  R  H  R  Q  T  L  A  K  P  Q  S  L  T  T  D  D  R  R  R  P  R  D  L  S  T  E  E  G  N  S  D  V  W  N  N  F  S  N  R  F  R  Q  V  Q  S  V  L  D  R  N  R  S  L  I  Q  Q  V  N  E  N  H  Q  S  R  T  T  D  N  M  V  R  N  V  S  L  I  Q  E  L  N  G  N  I  S  K  V  V  S  L  Y  S  D  I  S  T  N  F  S  T  M  F  R  Q  G  N  D  F  I  G  D  D  T  N  N  H  *  C  F  S  L  L  Q  S  S  L  *  H  P  Q  *  *  C  P  K  R  C  K  L  F  Y  N  *  V  D  V  A  V  K  S  S  T  L  N  I  L  E  F  I  F  N  F  L  G  H  S  V  C  V  Y  F  I  S  M  F  V  L  N  Y  *  E  Q  I  G  N  F  N  N  V  S  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25548" stop="25168"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDIRSMEDTFKRHRQTLAKPQSLTTDDRRRPRDLSTEEGNSDVWNNFSNRFRQVQSVLDRNRSLIQQVNENHQSRTTDNMVRNVSLIQELNGNISKVVSLYSDISTNFSTMFRQGNDFIGDDTNNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41983" PGL_stop="41431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41983" e_stop="41431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41983" e_stop="41431" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41983" stop="41431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCTTTTAATTTTTCATATATCAATGGAAGACACCTCTAACTTCAATCGCCATCGTCAAACCATAACCAAATCAAACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGGAAGGTGATTCTTCTGAGATGTGGAACAATTTTTCCAACAATTTTAGGCAAGTGCAGTCTGTGTTGGATCGAAATAGATTGTTGATTCAACAAGTTAACGAGAATCATCAATCGAGAACACACGATAGCATGGTGCAGAACGTGAGCTTAATTCAAGAACTCAATGGAAACATATCAAAGGTTTCGTCTATATATTCTGATTTCAACACTGACTTCACAAACATGATTCATCAACGGAAGAATGATGTTTGAGATTGACTATCAATCTGCAGTGCTTCTACGTATAATAAACTTTTCAAGTATATTATTATCAATTAAGCTGCAAGTTGTAATTTTACAACATGATATGATGTTTCTTTTCTATCTCCAAATTTCATATGAAATCAAATATATTATGTTGGCAATTTA</gDNA_template>
            <first_frame> N  S  F  N  F  S  Y  I  N  G  R  H  L  *  L  Q  S  P  S  S  N  H  N  Q  I  K  L  S  *  D  K  *  *  S  P  S  R  S  *  Q  L  Y  R  G  F  *  H  G  G  R  *  F  F  *  D  V  E  Q  F  F  Q  Q  F  *  A  S  A  V  C  V  G  S  K  *  I  V  D  S  T  S  *  R  E  S  S  I  E  N  T  R  *  H  G  A  E  R  E  L  N  S  R  T  Q  W  K  H  I  K  G  F  V  Y  I  F  *  F  Q  H  *  L  H  K  H  D  S  S  T  E  E  *  C  L  R  L  T  I  N  L  Q  C  F  Y  V  *  *  T  F  Q  V  Y  Y  Y  Q  L  S  C  K  L  *  F  Y  N  M  I  *  C  F  F  S  I  S  K  F  H  M  K  S  N  I  L  C  W  Q  F  </first_frame>
            <second_frame>  I  L  L  I  F  H  I  S  M  E  D  T  S  N  F  N  R  H  R  Q  T  I  T  K  S  N  S  R  K  I  N  N  N  R  H  R  V  R  D  N  S  T  V  D  F  N  M  E  E  G  D  S  S  E  M  W  N  N  F  S  N  N  F  R  Q  V  Q  S  V  L  D  R  N  R  L  L  I  Q  Q  V  N  E  N  H  Q  S  R  T  H  D  S  M  V  Q  N  V  S  L  I  Q  E  L  N  G  N  I  S  K  V  S  S  I  Y  S  D  F  N  T  D  F  T  N  M  I  H  Q  R  K  N  D  V  *  D  *  L  S  I  C  S  A  S  T  Y  N  K  L  F  K  Y  I  I  I  N  *  A  A  S  C  N  F  T  T  *  Y  D  V  S  F  L  S  P  N  F  I  *  N  Q  I  Y  Y  V  G  N  L </second_frame>
            <third_frame>   F  F  *  F  F  I  Y  Q  W  K  T  P  L  T  S  I  A  I  V  K  P  *  P  N  Q  T  L  V  R  *  I  I  I  A  I  A  F  V  T  T  L  P  W  I  L  T  W  R  K  V  I  L  L  R  C  G  T  I  F  P  T  I  L  G  K  C  S  L  C  W  I  E  I  D  C  *  F  N  K  L  T  R  I  I  N  R  E  H  T  I  A  W  C  R  T  *  A  *  F  K  N  S  M  E  T  Y  Q  R  F  R  L  Y  I  L  I  S  T  L  T  S  Q  T  *  F  I  N  G  R  M  M  F  E  I  D  Y  Q  S  A  V  L  L  R  I  I  N  F  S  S  I  L  L  S  I  K  L  Q  V  V  I  L  Q  H  D  M  M  F  L  F  Y  L  Q  I  S  Y  E  I  K  Y  I  M  L  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41982" stop="41587"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLIFHISMEDTSNFNRHRQTITKSNSRKINNNRHRVRDNSTVDFNMEEGDSSEMWNNFSNNFRQVQSVLDRNRLLIQQVNENHQSRTHDSMVQNVSLIQELNGNISKVSSIYSDFNTDFTNMIHQRKNDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47047" PGL_stop="48137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47047" e_stop="48137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="47047" e_stop="48137" e_length="1091"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47047" stop="48137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGTTTATAATACGCCGGAAGCGTAATTGACCAATCGATTCCAAATATGAAATTCCTTGAAGAAGGAAGGAGCAAATGATCAATGTGGTCATGATAATGAGGCAAGTGCTATAAAAGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAATGAAGACATCCCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCATCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGACGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTACATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATAATTATGCGATAGTATAACCGTAATATATCAAATACGGTTTGTGCCTTGGGCATAAAGATTTTTCACAAAAATCCTGACATTATTGGAGATGTTTTCTCTTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCGAAATATGAAAACTTGAATGCAATGAATATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGGTACAAAAGAATGACCCTAATAGTCCTTGTATTTTTATGAAATGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTACAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACT</gDNA_template>
            <first_frame> Q  S  L  *  Y  A  G  S  V  I  D  Q  S  I  P  N  M  K  F  L  E  E  G  R  S  K  *  S  M  W  S  *  *  *  G  K  C  Y  K  R  A  H  *  H  N  T  S  *  N  L  E  K  G  S  G  T  *  N  N  E  K  *  R  H  P  D  K  L  C  L  V  G  I  D  I  K  *  P  S  T  V  S  L  I  *  G  S  A  Q  *  Y  K  L  *  R  G  S  *  I  *  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  *  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  N  Y  A  I  V  *  P  *  Y  I  K  Y  G  L  C  L  G  H  K  D  F  S  Q  K  S  *  H  Y  W  R  C  F  L  F  W  W  M  Q  *  G  L  F  *  S  G  E  I  *  K  L  E  C  N  E  Y  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  N  G  L  G  K  T  K  F  C  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  M  S  F  L  V  M  K  L  Y  L  G  T  I  R  A  L  V  H  L  T  N  N  I  *  L  D  I  C  F  A  V  N  L   </first_frame>
            <second_frame>  R  V  Y  N  T  P  E  A  *  L  T  N  R  F  Q  I  *  N  S  L  K  K  E  G  A  N  D  Q  C  G  H  D  N  E  A  S  A  I  K  E  H  I  D  I  T  L  H  K  I  L  K  K  V  Q  V  P  E  I  M  K  N  E  D  I  P  I  S  Y  V  L  L  E  S  I  S  N  N  H  R  R  Y  L  *  Y  E  V  A  L  N  D  I  N  C  D  E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  Y  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  N  I  S  N  T  V  C  A  L  G  I  K  I  F  H  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  C  F  D  L  A  K  Y  E  N  L  N  A  M  N  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  K  G  T  K  E  *  P  *  *  S  L  Y  F  Y  E  M  V  L  V  R  Q  N  F  V  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  S  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  *  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  *  I  F  V  L  Q  *  I  Y  </second_frame>
            <third_frame>   E  F  I  I  R  R  K  R  N  *  P  I  D  S  K  Y  E  I  P  *  R  R  K  E  Q  M  I  N  V  V  M  I  M  R  Q  V  L  *  K  S  T  L  T  *  H  F  I  K  S  *  K  R  F  R  Y  L  K  *  *  K  M  K  T  S  R  *  V  M  S  C  W  N  R  Y  Q  I  T  I  D  G  I  F  D  M  R  *  R  S  M  I  *  I  V  T  R  I  L  N  L  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  I  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  T  *  I  K  V  *  C  Q  W  G  T  N  K  *  L  C  D  S  I  T  V  I  Y  Q  I  R  F  V  P  W  A  *  R  F  F  T  K  I  L  T  L  L  E  M  F  S  L  L  V  D  A  M  R  F  V  L  I  W  R  N  M  K  T  *  M  Q  *  I  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  R  V  Q  K  N  D  P  N  S  P  C  I  F  M  K  W  S  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  D  E  F  L  G  D  E  T  L  S  W  Y  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47099" stop="47296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLKKEGANDQCGHDNEASAIKEHIDITLHKILKKVQVPEIMKNEDIPISYVLLESISNNHRRYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="62618" PGL_stop="62904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62618" e_stop="62904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="62618" e_stop="62904" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62618" stop="62904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0192J17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="65621" PGL_stop="62911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65621" e_stop="62911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="65621" e_stop="62911" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65621" stop="64909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65032" stop="64275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64422" stop="63864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64418" stop="62982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63343" stop="62911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAGTCTTAGAAAGATCCACCATCACTCCATCCTTAGAAACCAAGTGCCCCAAGAAGAACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTATCACGAAGAAAGGAGACGATGCAGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATTCCAGGCTTGGCTAACGTCACCGTTTTAGCTTTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAAACAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAGTACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAACGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTGGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGTCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTTCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGTTGATCACTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGATCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATTCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  S  L  R  K  I  H  H  H  S  I  L  R  N  Q  V  P  Q  E  E  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  T  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  H  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  I  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  Y  S  R  L  G  *  R  H  R  F  S  F  T  I  Q  D  C  K  L  R  R  K  P  S  H  A  Q  N  H  I  K  I  I  H  C  Q  D  K  Q  I  Y  I  S  V  A  P  H  K  V  Y  H  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  R  C  L  R  F  R  P  P  R  E  N  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  R  V  N  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  D  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  W  S  G  I  S  G  *  C  T  E  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  H  T  E  K  F  M  L  I  T  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  I  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  *  Q  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  V  L  E  R  S  T  I  T  P  S  L  E  T  K  C  P  K  K  N  T  A  S  S  Q  N  L  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  I  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  S  R  R  K  E  T  M  Q  T  G  L  E  V  *  S  P  S  H  T  N  G  S  I  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  M  P  R  I  T  S  K  S  S  I  A  K  I  N  K  S  T  *  V  L  L  P  T  K  F  T  T  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  K  E  D  T  *  E  N  V  D  P  G  S  N  S  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  T  S  D  A  S  A  S  D  R  L  G  K  T  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  G  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  Q  G  I  Y  F  S  I  N  K  L  E  N  E  V  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  F  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  I  L  K  S  S  C  *  S  L  V  I  T  G  P  V  V  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  S  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  D  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  S  A  P  R  R  T  L  H  L  A  K  T  Y  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  Y  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  Y  H  E  E  R  R  R  C  R  P  D  W  K  C  S  H  P  P  T  L  T  G  L  F  Q  A  W  L  T  S  P  F  *  L  Y  N  P  R  L  Q  I  A  E  K  A  K  S  C  P  E  S  H  Q  N  H  P  L  P  R  *  T  N  L  H  K  C  C  S  P  Q  S  L  P  H  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  I  R  K  I  H  K  K  T  W  I  Q  D  Q  T  V  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  *  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  *  S  Q  S  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  R  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  G  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  R  G  Y  T  S  P  *  T  S  *  R  T  R  S  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  S  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  Q  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  G  D  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  T  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64190" stop="63936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSRVNHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63389" stop="63135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQEHTEKFMLITCHYRPCSQTRKCAYFQWNIHAGIHSSRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64894" stop="64649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLSRRKETMQTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65357" stop="65118"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNTVHQAHERSRGIRKTKGHHYKFVMPIPHSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64607" stop="64386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHRFSFTIQDCKLRRKPSHAQNHIKIIHCQDKQIYISVAPHKVYHTRPIYLFNYHRLTHRSRNTNRHIKKFTM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63109" stop="62912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGDNSSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65425" stop="65228"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63880" stop="63686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62978" PGL_stop="63531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62978" e_stop="63531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="62978" e_stop="63531" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62978" stop="63531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGAATTGTCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGATCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCCTGTAATGACAAGTGATCAACATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGAAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGACCTCGTTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  V  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  K  H  I  S  S  S  D  Y  R  A  C  N  D  K  *  S  T  *  T  F  Q  Y  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  E  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  D  L  V   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  L  S  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  D  P  R  M  D  V  P  L  E  I  S  T  F  P  R  L  T  T  G  P  V  M  T  S  D  Q  H  E  L  F  S  M  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  K  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  T  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  I  P  A  W  M  F  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  V  I  N  M  N  F  S  V  C  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  *  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62979" stop="63530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETEQVQNEELSPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMDPRMDVPLEISTFPRLTTGPVMTSDQHELFSMFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVKFVTYQFQGNAKMWWRSHIECQPIEAPPMTWTSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="63605" PGL_stop="65049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63605" e_stop="63791"/>
            <exon e_start="64536" e_stop="65049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="63605" e_stop="63791" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63792" i_stop="64535" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="64536" e_stop="65049" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63605" stop="63791"/>
              <exon start="64536" stop="65049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACTCCACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTGGGCATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAAAGCTAAAACGGTGACGTTAGCCAAGCCTGGAATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCTGCATCGTCTCCTTTCTTCGTGATAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  P  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  G  R  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  G  H  D  L  A  F  S  A  I  C  N  L  G  L  *  S  *  N  G  D  V  S  Q  A  W  N  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  L  H  R  L  L  S  S  *  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  P  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  K  A  K  T  V  T  L  A  K  P  G  I  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  V  S  F  L  R  D  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  H  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  S  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  A  *  L  G  F  L  R  N  L  Q  S  W  I  V  K  L  K  R  *  R  *  P  S  L  E  *  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  I  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63606" stop="63791"/>
                    <exon start="64536" stop="65048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATPLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCKAKTVTLAKPGIDPLVWEGDYTSNPVCIVSFLRDKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67101" PGL_stop="66925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67101" e_stop="66925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="67101" e_stop="66925" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67101" stop="66925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAACGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  T  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  R  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0192J17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84881" PGL_stop="85399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84881" e_stop="85399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="84881" e_stop="85399" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84881" stop="85399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343095" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACTAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</gDNA_template>
            <first_frame> F  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  K  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  L  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  *  M  N  F  S  F  N  Y  D  C  K  L  N  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  *  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  *  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  I  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  K  *  I  S  V  L  I  T  T  A  N  *  T  L  C  V  *  I  N  K  R  T  N  M  W  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  S  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  R  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  L  N  E  F  Q  F  *  L  R  L  Q  I  E  H  F  V  F  R  *  I  N  V  Q  T  C  G  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84881" stop="85258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKKDWSDPKHVVAETVYPPRYRRSSGRLRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="88790" PGL_stop="87883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88790" e_stop="88510"/>
            <exon e_start="88307" e_stop="88185"/>
            <exon e_start="88101" e_stop="87883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.972"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.984"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="88790" e_stop="88510" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="88509" i_stop="88308" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="88307" e_stop="88185" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88184" i_stop="88102" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="88101" e_stop="87883" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88790" stop="88510"/>
              <exon start="88307" stop="88185"/>
              <exon start="88101" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTTACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCAATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  G  M  S  M  W  M  V  L  V  L  P  *  M  R  V  N  Q  *  S  L  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  N  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  Q  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  K  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  G  L  L  L  K  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  L  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  R  G  C  Q  C  G  W  C  W  C  C  R  K  *  G  *  T  N  S  H  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  T  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  R  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  S  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  Y  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  G  D  V  N  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  T  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  P  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  E  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  G  I  A  V  K  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88788" stop="88510"/>
                    <exon start="88307" stop="88185"/>
                    <exon start="88101" stop="87883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSYKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVNVDGVGVAVNEGEPIVTDPKDGDAHQSHQDLNEHIMDQPVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIEALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITGIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="98303" PGL_stop="94354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98303" e_stop="98084"/>
            <exon e_start="96902" e_stop="96825"/>
            <exon e_start="96429" e_stop="96289"/>
            <exon e_start="95875" e_stop="95799"/>
            <exon e_start="95663" e_stop="95514"/>
            <exon e_start="94871" e_stop="94354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.711" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.595" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98303" e_stop="98084" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.890">
            <gDNA_intron_boundary i_start="98083" i_stop="96903" i_length="1181"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96902" e_stop="96825" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96824" i_stop="96430" i_length="395"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96429" e_stop="96289" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.711">
            <gDNA_intron_boundary i_start="96288" i_stop="95876" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95875" e_stop="95799" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.840">
            <gDNA_intron_boundary i_start="95798" i_stop="95664" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95663" e_stop="95514" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.595" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95513" i_stop="94872" i_length="642"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="94871" e_stop="94354" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98303" stop="98084"/>
              <exon start="96902" stop="96825"/>
              <exon start="96429" stop="96289"/>
              <exon start="95875" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95864" stop="95799"/>
              <exon start="95663" stop="95514"/>
              <exon start="94871" stop="94502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335806" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94697" stop="94354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94671" stop="94361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335807" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAATTGAATGGAGTAATACAAAAGAGGGGAAAATTGAAAGATGAGGTTATAACAAGGAAGGGAAGAGAAGAGAAGAGAAGAGAATAAGGGTTTCGGTGAATCGAGGATGGTTGGACCACAGAGACCACAGTTCGTTCTCTTTGGATCCTCTATTGTTCAGATCAGTTACAGCAATGGCGGTTGGGGCGCTATTCTCTCCGACATTTATGCCCGCAAA : GCGGACATATTATTGCGAGGTTACTATGGTTGGAACTCAAGACGTGCTATACAGGTCCTTGATCAAGTGTTTCCAAAG : GATGCAACTGTTCAGCCTACATTGGTGATTGTTTACTTTGGTGGTAATGATTCAATGGGACCTCATTCATCTGGATTGGGTCCTCATGTACCTCTTCCAGAGTACATTGAGAACATGAGAAAAATTGCAACTCATCTCAAG : AGCATCTCAGAGAATATTCGCATAATTTTTCTCAGTTGTCCACCTGTTGACGAGGCCAGAATTCGTGAAAATACAAG : TGCATATTTCAGTGAGTTGGTTCGAACAAATGAATTGTGTCGACAGTATTCTGAGGCCTGTATAGAGCTATGCAAAGAGATGAATCTGAAGGTTGTTGATCTTTGGACAGCACTTCAGAAAAGAAAAGATTGGTTGACTGCTTGTTTTAC : GGATGGGATTCACTTAGCGGAGGAGGGGAGTAAAATAGTTGTTGAAGAGATCCTCAAGGTGTTGAAGGAAGCCGAGTGGACACCTAGTTTACACTGGAAATCAATGGCAACAGAATTTCCTGAAGATTCTCCTTATGATTTGGTTTTAGCAGATGGTAAAACCACAATAAACCCATCTGACTGGACTTACCATCGACAAATTCAATGGGATTAGATTAACCTTCAAACATAAAGCTTCACAATGTATCCTATATTTTCCCTTTTCATTCAAATGCTAATTTGTCACTTCTTTATTCATAAAATATATTGAAATTACTCTTGGCCCAACTAGGCCTTTAGTTAATAAATAATACTATATCTAGTGTTTGTAATTATGTGATTGTATCTTCTATTTTAGGATGGACAATGTAGCACTTTTGTTCCACAAGTTGGAGATGGAATATTCCCAACTTACAATAACATATCACCGTGTAATTGCTCCTTTGGTAAATATATCTGTCCTTTGATCCTTGCTTGCT</gDNA_template>
            <first_frame> F  E  L  N  G  V  I  Q  K  R  G  K  L  K  D  E  V  I  T  R  K  G  R  E  E  K  R  R  E  *  G  F  R  *  I  E  D  G  W  T  T  E  T  T  V  R  S  L  W  I  L  Y  C  S  D  Q  L  Q  Q  W  R  L  G  R  Y  S  L  R  H  L  C  P  Q   : S  G  H  I  I  A  R  L  L  W  L  E  L  K  T  C  Y  T  G  P  *  S  S  V  S  K   : G  C  N  C  S  A  Y  I  G  D  C  L  L  W  W  *  *  F  N  G  T  S  F  I  W  I  G  S  S  C  T  S  S  R  V  H  *  E  H  E  K  N  C  N  S  S  Q   : E  H  L  R  E  Y  S  H  N  F  S  Q  L  S  T  C  *  R  G  Q  N  S  *  K  Y  K  :  C  I  F  Q  *  V  G  S  N  K  *  I  V  S  T  V  F  *  G  L  Y  R  A  M  Q  R  D  E  S  E  G  C  *  S  L  D  S  T  S  E  K  K  R  L  V  D  C  L  F  Y  :  G  W  D  S  L  S  G  G  G  E  *  N  S  C  *  R  D  P  Q  G  V  E  G  S  R  V  D  T  *  F  T  L  E  I  N  G  N  R  I  S  *  R  F  S  L  *  F  G  F  S  R  W  *  N  H  N  K  P  I  *  L  D  L  P  S  T  N  S  M  G  L  D  *  P  S  N  I  K  L  H  N  V  S  Y  I  F  P  F  H  S  N  A  N  L  S  L  L  Y  S  *  N  I  L  K  L  L  L  A  Q  L  G  L  *  L  I  N  N  T  I  S  S  V  C  N  Y  V  I  V  S  S  I  L  G  W  T  M  *  H  F  C  S  T  S  W  R  W  N  I  P  N  L  Q  *  H  I  T  V  *  L  L  L  W  *  I  Y  L  S  F  D  P  C  L   </first_frame>
            <second_frame>  L  N  *  M  E  *  Y  K  R  G  E  N  *  K  M  R  L  *  Q  G  R  E  E  K  R  R  E  E  N  K  G  F  G  E  S  R  M  V  G  P  Q  R  P  Q  F  V  L  F  G  S  S  I  V  Q  I  S  Y  S  N  G  G  W  G  A  I  L  S  D  I  Y  A  R  K  :  A  D  I  L  L  R  G  Y  Y  G  W  N  S  R  R  A  I  Q  V  L  D  Q  V  F  P  K  :  D  A  T  V  Q  P  T  L  V  I  V  Y  F  G  G  N  D  S  M  G  P  H  S  S  G  L  G  P  H  V  P  L  P  E  Y  I  E  N  M  R  K  I  A  T  H  L  K  :  S  I  S  E  N  I  R  I  I  F  L  S  C  P  P  V  D  E  A  R  I  R  E  N  T  S :   A  Y  F  S  E  L  V  R  T  N  E  L  C  R  Q  Y  S  E  A  C  I  E  L  C  K  E  M  N  L  K  V  V  D  L  W  T  A  L  Q  K  R  K  D  W  L  T  A  C  F  T :   D  G  I  H  L  A  E  E  G  S  K  I  V  V  E  E  I  L  K  V  L  K  E  A  E  W  T  P  S  L  H  W  K  S  M  A  T  E  F  P  E  D  S  P  Y  D  L  V  L  A  D  G  K  T  T  I  N  P  S  D  W  T  Y  H  R  Q  I  Q  W  D  *  I  N  L  Q  T  *  S  F  T  M  Y  P  I  F  S  L  F  I  Q  M  L  I  C  H  F  F  I  H  K  I  Y  *  N  Y  S  W  P  N  *  A  F  S  *  *  I  I  L  Y  L  V  F  V  I  M  *  L  Y  L  L  F  *  D  G  Q  C  S  T  F  V  P  Q  V  G  D  G  I  F  P  T  Y  N  N  I  S  P  C  N  C  S  F  G  K  Y  I  C  P  L  I  L  A  C  </second_frame>
            <third_frame>   *  I  E  W  S  N  T  K  E  G  K  I  E  R  *  G  Y  N  K  E  G  K  R  R  E  E  K  R  I  R  V  S  V  N  R  G  W  L  D  H  R  D  H  S  S  F  S  L  D  P  L  L  F  R  S  V  T  A  M  A  V  G  A  L  F  S  P  T  F  M  P  A  K :   R  T  Y  Y  C  E  V  T  M  V  G  T  Q  D  V  L  Y  R  S  L  I  K  C  F  Q  R :   M  Q  L  F  S  L  H  W  *  L  F  T  L  V  V  M  I  Q  W  D  L  I  H  L  D  W  V  L  M  Y  L  F  Q  S  T  L  R  T  *  E  K  L  Q  L  I  S  R :   A  S  Q  R  I  F  A  *  F  F  S  V  V  H  L  L  T  R  P  E  F  V  K  I  Q   : V  H  I  S  V  S  W  F  E  Q  M  N  C  V  D  S  I  L  R  P  V  *  S  Y  A  K  R  *  I  *  R  L  L  I  F  G  Q  H  F  R  K  E  K  I  G  *  L  L  V  L   : R  M  G  F  T  *  R  R  R  G  V  K  *  L  L  K  R  S  S  R  C  *  R  K  P  S  G  H  L  V  Y  T  G  N  Q  W  Q  Q  N  F  L  K  I  L  L  M  I  W  F  *  Q  M  V  K  P  Q  *  T  H  L  T  G  L  T  I  D  K  F  N  G  I  R  L  T  F  K  H  K  A  S  Q  C  I  L  Y  F  P  F  S  F  K  C  *  F  V  T  S  L  F  I  K  Y  I  E  I  T  L  G  P  T  R  P  L  V  N  K  *  Y  Y  I  *  C  L  *  L  C  D  C  I  F  Y  F  R  M  D  N  V  A  L  L  F  H  K  L  E  M  E  Y  S  Q  L  T  I  T  Y  H  R  V  I  A  P  L  V  N  I  S  V  L  *  S  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98248" stop="98084"/>
                    <exon start="96902" stop="96825"/>
                    <exon start="96429" stop="96289"/>
                    <exon start="95875" stop="95799"/>
                    <exon start="95663" stop="95514"/>
                    <exon start="94871" stop="94658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGREEKRREENKGFGESRMVGPQRPQFVLFGSSIVQISYSNGGWGAILSDIYARKADILLRGYYGWNSRRAIQVLDQVFPKDATVQPTLVIVYFGGNDSMGPHSSGLGPHVPLPEYIENMRKIATHLKSISENIRIIFLSCPPVDEARIRENTSAYFSELVRTNELCRQYSEACIELCKEMNLKVVDLWTALQKRKDWLTACFTDGIHLAEEGSKIVVEEILKVLKEAEWTPSLHWKSMATEFPEDSPYDLVLADGKTTINPSDWTYHRQIQWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="106064" PGL_stop="103976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106064" e_stop="105717"/>
            <exon e_start="103993" e_stop="103976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.611"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106064" e_stop="105717" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="105716" i_stop="103994" i_length="1723"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="103993" e_stop="103976" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106064" stop="105717"/>
              <exon start="103993" stop="103976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCCGGGTTTGCGTAATGCACATAGCAGTGTGGCTTTTACAACTTCAGAAAGCATTGACATTGTGAAAGCAAGTATACTTCCAATTTTATTGGATGTCCACTAACATAGTGAAAGCAACTAACAATCAGGAGATGTTTGATATGGAATTTTGTTCAAAACTTTCTATAGAAGGTGGATTCATTAATTTTATTTTATTTTTGCAATTCTTTTGTAATATGCTGCATTTACAAATTTTTAAGCAGAATGAACCTCTTAGACTAGGCTAGGGAAGCAAAAATGTTTATTTGGTTGTGAATCATCCTAGGATATTAATGGTATGTTAGCCATAAATTGTGCAATTTCTTTT : ATTATAAGAAGAAGATAA</gDNA_template>
            <first_frame> R  P  G  L  R  N  A  H  S  S  V  A  F  T  T  S  E  S  I  D  I  V  K  A  S  I  L  P  I  L  L  D  V  H  *  H  S  E  S  N  *  Q  S  G  D  V  *  Y  G  I  L  F  K  T  F  Y  R  R  W  I  H  *  F  Y  F  I  F  A  I  L  L  *  Y  A  A  F  T  N  F  *  A  E  *  T  S  *  T  R  L  G  K  Q  K  C  L  F  G  C  E  S  S  *  D  I  N  G  M  L  A  I  N  C  A  I  S  F  :  I  I  R  R  R  * </first_frame>
            <second_frame>  G  R  V  C  V  M  H  I  A  V  W  L  L  Q  L  Q  K  A  L  T  L  *  K  Q  V  Y  F  Q  F  Y  W  M  S  T  N  I  V  K  A  T  N  N  Q  E  M  F  D  M  E  F  C  S  K  L  S  I  E  G  G  F  I  N  F  I  L  F  L  Q  F  F  C  N  M  L  H  L  Q  I  F  K  Q  N  E  P  L  R  L  G  *  G  S  K  N  V  Y  L  V  V  N  H  P  R  I  L  M  V  C  *  P  *  I  V  Q  F  L  L :   L  *  E  E  D   </second_frame>
            <third_frame>   A  G  F  A  *  C  T  *  Q  C  G  F  Y  N  F  R  K  H  *  H  C  E  S  K  Y  T  S  N  F  I  G  C  P  L  T  *  *  K  Q  L  T  I  R  R  C  L  I  W  N  F  V  Q  N  F  L  *  K  V  D  S  L  I  L  F  Y  F  C  N  S  F  V  I  C  C  I  Y  K  F  L  S  R  M  N  L  L  D  *  A  R  E  A  K  M  F  I  W  L  *  I  I  L  G  Y  *  W  Y  V  S  H  K  L  C  N  F  F   : Y  Y  K  K  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0192J17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105997" stop="105797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQVYFQFYWMSTNIVKATNNQEMFDMEFCSKLSIEGGFINFILFLQFFCNMLHLQIFKQNEPLRLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 62 chains have been computed
$ 
$ memory statistics:
$ 236240 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 10738 bytes was the average size of a spliced alignment
$ 22728 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1515 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 79 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:38:49
-->
