<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 06:10:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410248" ref_strand="+" ref_description="SGN-E410248 [PPI-16-B7]">
      <seq>caggatgggatcttgaagtacatgttgaaaatgatggaagtatgtaaagctcagggttttgtttatgggatcattcccgaaaaaggcaagccggttagtggggcatctgataatcttagggagtggtggaaggataaagtgaggtttgatcgaaatggtcctgcagcaatagccaaataccaagctgatcatgccatctctggcatgaacgaggggtctaatccagttggtccaacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgatcctcctcagagaagatttccattggagaaaggtgttccaccaccatggtggcccacaggacaggaggattggtggcctcaattgggtttgcagaaggaccaaggttctctaccttacaagaagcctcatgatctgaagaaggcgtggaaggttggtgtcctcactgcagtgatncagcacatgttccctgatattgctaaaatccgcaagctggtaaggcagtcaaagtgcttacaggacaagatgacagccaaggaaagtgncacttggcttgcccatcatcagccaggaggaagctttggctcgagaactctatcctgatcgctgtccacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="907" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="607" g_stop="1" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E410248" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="607" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTTCACCCCCATGGTGGCCTACAGGACAGGAGGACTGGTGGCCACAATTGGGTTTGCAGAAGGATCAAGGTCCTCCACCTTACAAAAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTAACAGCGGTGATCAAGCACATTTCCCCTGATATTGCTAAAATCCGGAAGCTTGTGAGGCAGTCAAAGTGCTTGCAGGATAAGATGACAGCAAAAGAAAGTGCGACTTGGCTTG-CTATCATCAATCAGGAGGAAGCTT</genome_strand>
        <mrna_strand>CAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCCGAAAAAGGCAAGCCGGTTAGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGGTTTGATCGAAATGGTCCTGCAGCAATAGCCAAATACCAAGCTGATCATGCCATCTCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCAACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTCCACCACCATGGTGGCCCACAGGACAGGAGGATTGGTGGCCTCAATTGGGTTTGCAGAAGGACCAAGGTTCTCTACCTTACAAGAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTCACTGCAGTGATNCAGCACATGTTCCCTGATATTGCTAAAATCCGCAAGCTGGTAAGGCAGTCAAAGTGCTTACAGGACAAGATGACAGCCAAGGAAAGTGNCACTTGGCTTGCCCATCATCAGCCAGGAGGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272403" ref_strand="+" ref_description="SGN-E272403 [cLEM-19-K4]">
      <seq>gcaatagccaaataccaagctgatcatgccatccctggcatgaacgaggggtctaatccagttggtcctacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgatcctcctcagagaagatttccattggagaaaggtgttccaccaccatggtggcccacaggaaaggaggattggtggcctcaattgggtttgcagaaggaccaaggttctctaccttacaagaagcctcatgatctgaagaaggcgtggaaggttggtgtcctaacagcggtgatcaagcacatgttccctgatattgctaaaatccgcaagctggtaaggcagtcaaagtgcttacaggacaagatgacagccaaggaaagtgcaacttggcttgccatcatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="742" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="442" g_stop="14" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E272403" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="442" e_stop="14"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTTCACCCCCATGGTGGCCTACAGGACAGGAGGACTGGTGGCCACAATTGGGTTTGCAGAAGGATCAAGGTCCTCCACCTTACAAAAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTAACAGCGGTGATCAAGCACATTTCCCCTGATATTGCTAAAATCCGGAAGCTTGTGAGGCAGTCAAAGTGCTTGCAGGATAAGATGACAGCAAAAGAAAGTGCGACTTGGCTTGCTATCATCAAT</genome_strand>
        <mrna_strand>GCAATAGCCAAATACCAAGCTGATCATGCCATCCCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTCCACCACCATGGTGGCCCACAGGAAAGGAGGATTGGTGGCCTCAATTGGGTTTGCAGAAGGACCAAGGTTCTCTACCTTACAAGAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTAACAGCGGTGATCAAGCACATGTTCCCTGATATTGCTAAAATCCGCAAGCTGGTAAGGCAGTCAAAGTGCTTACAGGACAAGATGACAGCCAAGGAAAGTGCAACTTGGCTTGCCATCATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407838" ref_strand="+" ref_description="SGN-E407838 [PPI-8-P15]">
      <seq>caggatgggatcttgaagtacatgttgaaaatgatggaagtatgtaaagctcagggttttgtttatgggatcattcccgaaaaaggcaagccggttagtggggcatctgataatcttagggagtggtggaaggataaagtgaggtttgatcgaaatggtcctgcagcaatagccaaataccaagctgatcatgccatctctggcatgaacgaggggtctaatccagttggtccaacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgatcctcctcagagaagatttccattggagaaaggtgttccaccaccatggtggcccacaggacaggaggattggtggcctcaattgggtttgcagaaggaccaaggttctctaccttacaagaagcctcatgatctgaagaaggcgtggaaggttggtgtcctcactgcagtgatcaagcacatgttccctgatattgctaaaatccgcaagctggtaaggcagtcaaagtgcttacaggacaagatgacagccaaggaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="907" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="607" g_stop="38" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E407838" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="607" e_stop="38"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTTCACCCCCATGGTGGCCTACAGGACAGGAGGACTGGTGGCCACAATTGGGTTTGCAGAAGGATCAAGGTCCTCCACCTTACAAAAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTAACAGCGGTGATCAAGCACATTTCCCCTGATATTGCTAAAATCCGGAAGCTTGTGAGGCAGTCAAAGTGCTTGCAGGATAAGATGACAGCAAAAGAAAGT</genome_strand>
        <mrna_strand>CAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCCGAAAAAGGCAAGCCGGTTAGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGGTTTGATCGAAATGGTCCTGCAGCAATAGCCAAATACCAAGCTGATCATGCCATCTCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCAACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTCCACCACCATGGTGGCCCACAGGACAGGAGGATTGGTGGCCTCAATTGGGTTTGCAGAAGGACCAAGGTTCTCTACCTTACAAGAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTCACTGCAGTGATCAAGCACATGTTCCCTGATATTGCTAAAATCCGCAAGCTGGTAAGGCAGTCAAAGTGCTTACAGGACAAGATGACAGCCAAGGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323917" ref_strand="+" ref_description="SGN-E323917 [cTOC-3-M17]">
      <seq>aggcgaggaggaagaagatgtcaagggcacaggatgggatcttgaagtacatgctgaaaatgatggaagtatgtaaagctcaggggtttgtttatgggatcattccggaaaaaggcaagccagttagtggggcatctgataatcttagggagtggtggaaggataaggtgaggttcgatcgaaatggtcctgcagcaatagccaaataccaagctgatcatgccatccctggcatgaacgaggggtctaatccagttggtcctacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgatcctcctcagagaagatttccattggagaaaggtgttccaccaccatggtggcccacaggaaaggaggattggtggcctcaattgggtttgcagaaggaccaaggttctctaccttacaagaagcctcatgatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="936" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="636" g_stop="163" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E323917" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="636" e_stop="163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGGAGGAAGAAGATGTCGAGGGCACAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTTCACCCCCATGGTGGCCTACAGGACAGGAGGACTGGTGGCCACAATTGGGTTTGCAGAAGGATCAAGGTCCTCCACCTTACAAAAAGCCTCATGATCTGA</genome_strand>
        <mrna_strand>AGGCGAGGAGGAAGAAGATGTCAAGGGCACAGGATGGGATCTTGAAGTACATGCTGAAAATGATGGAAGTATGTAAAGCTCAGGGGTTTGTTTATGGGATCATTCCGGAAAAAGGCAAGCCAGTTAGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAGGTGAGGTTCGATCGAAATGGTCCTGCAGCAATAGCCAAATACCAAGCTGATCATGCCATCCCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTCCACCACCATGGTGGCCCACAGGAAAGGAGGATTGGTGGCCTCAATTGGGTTTGCAGAAGGACCAAGGTTCTCTACCTTACAAGAAGCCTCATGATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210272" ref_strand="+" ref_description="SGN-E210272 [cLEC-35-I7]">
      <seq>atgggatcttgaagtacatgctgaaaatgatggaagtatgtaaagctcaggggtttgtttatgggatcattccggaaaaaggcaagccagttagtggggcatctgataatcttagggagtggtggaaggataaggtgaggttcgatcgaaatggtcctgcagcaatagccaaataccaagctgatcatgccatccctggcatgaacgaggggtctaatccagttggtcctacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgatcctcctcagagaagatttccattggagaaaggtgttccaccaccatggtggcccacaggaaaggaggattggtggcctcaattgggtttgcagaaggaccaaggttctctaccttacaagaagcctcatgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="903" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="603" g_stop="164" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E210272" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="603" e_stop="164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTTCACCCCCATGGTGGCCTACAGGACAGGAGGACTGGTGGCCACAATTGGGTTTGCAGAAGGATCAAGGTCCTCCACCTTACAAAAAGCCTCATGATCTG</genome_strand>
        <mrna_strand>ATGGGATCTTGAAGTACATGCTGAAAATGATGGAAGTATGTAAAGCTCAGGGGTTTGTTTATGGGATCATTCCGGAAAAAGGCAAGCCAGTTAGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAGGTGAGGTTCGATCGAAATGGTCCTGCAGCAATAGCCAAATACCAAGCTGATCATGCCATCCCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTCCACCACCATGGTGGCCCACAGGAAAGGAGGATTGGTGGCCTCAATTGGGTTTGCAGAAGGACCAAGGTTCTCTACCTTACAAGAAGCCTCATGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330879" ref_strand="+" ref_description="SGN-E330879 [cTOD-10-F20]">
      <seq>ctgaaagaaatgagtaaaagtaaggaaggtgttgatcctgcaaaacaacgtcagtcgcaggagcaggcgaggaggaagaagatgtcaagggcacaggatgggatcttgaagtacatgctgaaaatgatggaagtatgtaaagctcaggggtttgtttatgggatcattccggaaaaaggcaagccagttagtggggcatctgataatcttagggagtggtggaaggataaggtgaggttcgatcgaaatggtcctgcagcaatagccaaataccaagctgatcatgccatccctggcatgaacgaggggtctaatccagttggtcctacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1000" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="700" g_stop="298" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E330879" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="700" e_stop="298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGAAATGAATCAGGGGATGGAAGATGTTGATTCTGTCAAACGACGCCAGTCACAGGAGCAGGCAAGGAGGAAGAAGATGTCGAGGGCACAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATC</genome_strand>
        <mrna_strand>CTGAAAGAAATGAGTAAAAGTAAGGAAGGTGTTGATCCTGCAAAACAACGTCAGTCGCAGGAGCAGGCGAGGAGGAAGAAGATGTCAAGGGCACAGGATGGGATCTTGAAGTACATGCTGAAAATGATGGAAGTATGTAAAGCTCAGGGGTTTGTTTATGGGATCATTCCGGAAAAAGGCAAGCCAGTTAGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAGGTGAGGTTCGATCGAAATGGTCCTGCAGCAATAGCCAAATACCAAGCTGATCATGCCATCCCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323918" ref_strand="+" ref_description="SGN-E323918 [cTOC-3-M19]">
      <seq>aggaggaagaagatgtcaagggcacaggatgggatcttgaagtacatgctgaaaatgatggaagtatgtaaagctcaggggtttgtttatgggatcattccggaaaaaggcaagccagttagtggggcatctgataatcttagggagtggtggaaggataaggtgaggttcgatcgaaatggtcctgcagcaatagccaaataccaagctgatcatgccatccctggcatgaacgaggggtctaatccagttggtcctacccctcacaccttgcaggagctgcaagataccacccttggttcgttattatcagctttgatgcagcactgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="931" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="631" g_stop="299" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E323918" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="631" e_stop="299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGAAGAAGATGTCGAGGGCACAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGAT</genome_strand>
        <mrna_strand>AGGAGGAAGAAGATGTCAAGGGCACAGGATGGGATCTTGAAGTACATGCTGAAAATGATGGAAGTATGTAAAGCTCAGGGGTTTGTTTATGGGATCATTCCGGAAAAAGGCAAGCCAGTTAGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAGGTGAGGTTCGATCGAAATGGTCCTGCAGCAATAGCCAAATACCAAGCTGATCATGCCATCCCTGGCATGAACGAGGGGTCTAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559448" ref_strand="+" ref_description="SGN-E559448 [18947]">
      <seq>cttttgcaaaaatcataaattcaggatcaagtatcgcgtaatttagttgatttcgattgatgagtattgagaaaggacaggataatctgtgaaaaattgggtgttagctgctaattctgtttaggtttcttgaagtttggtgtttgattattgtttggaggagtgttgttcttgtcaagatgatgatgtttgaggaaatggggttctgtggggatcttgatttctttcctgctccgcttaaggacgtggaggtggctgctccacagactgaggcagagcaggtggtggatgatgattatagtgatgaggatattgatgtggatgagctagagaagagagtgtggagggacaagatgaagctgaaaaggctgaaagaaatgaatcaggggatggaagatgttgattctgtgaaacgacgccagtcacaggagcaggcaaggaggaagaagatgtcgagggcacaggatgggatcttgaagtacatgttgaaaatgatggaagtatgtaaagctcagggttttgtttatgggatcattccggaaaaaggcaagccggttggtggggcatctgataatcttagggagtggtggaaggataaagtgagatttgatcgcaatggccctgcgtctatagccaaataccaagctgagcatgccatcccaggcaagaatgaggtatcaaatccagttggtcctacacctcacaccttgcaggagctgcaagataccacccttggttcgttattgtcagctttgatgcagcactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1318" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1032" g_stop="300" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="769" r_length="734" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E559448" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1032" e_stop="300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAATATCGCGTAATTTGGATTGATGAGTGTTGAGAAAGGACAGGATAATCTGTGAAAAAATTGGGTGTTAGCTGCTAGTTCTGTTTAGATTTCTTGACGTTTGGTGATT-AGT-TT-TTTGGAGGAGT-TTGTTCTTGTGAAGATGATGATGTTTGAGGAAATGGGGTTCTGTGGGGATCTTGATTTCTTTCCTGCTCCGCTTAAGGAAGTGGAGGTGGCTGCTCCACAGACTGAGGCAGAGCAGGTGGTGGATGATGATTATAGTGATGAGGATATTGATGTGGATGAGCTAGAGAAGAGAGTGTGGAGGGACAAGATGAAGCTGAAAAGGCTGAAAGAAATGAATCAGGGGATGGAAGATGTTGATTCTGTCAAACGACGCCAGTCACAGGAGCAGGCAAGGAGGAAGAAGATGTCGAGGGCACAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGA</genome_strand>
        <mrna_strand>GCGTA-ATTTAG-TTGATTTCGATTGATGAGTATTGAGAAAGGACAGGATAATCTGTG-AAAAATTGGGTGTTAGCTGCTAATTCTGTTTAGGTTTCTTGAAGTTTGGTGTTTGATTATTGTTTGGAGGAGTGTTGTTCTTGTCAAGATGATGATGTTTGAGGAAATGGGGTTCTGTGGGGATCTTGATTTCTTTCCTGCTCCGCTTAAGGACGTGGAGGTGGCTGCTCCACAGACTGAGGCAGAGCAGGTGGTGGATGATGATTATAGTGATGAGGATATTGATGTGGATGAGCTAGAGAAGAGAGTGTGGAGGGACAAGATGAAGCTGAAAAGGCTGAAAGAAATGAATCAGGGGATGGAAGATGTTGATTCTGTGAAACGACGCCAGTCACAGGAGCAGGCAAGGAGGAAGAAGATGTCGAGGGCACAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAAAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCGTCTATAGCCAAATACCAAGCTGAGCATGCCATCCCAGGCAAGAATGAGGTATCAAATCCAGTTGGTCCTACACCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTGTCAGCTTTGATGCAGCACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335626" ref_strand="+" ref_description="SGN-E335626 [cTOE-8-K10]">
      <seq>catataagctcttaaaaaatggtcaaattattattctcctaagtagagaaaaagagtttcatcaaattttttcaaatatcataaattcaggattaaatatcgcgtaatttggattgatgagtgttgagaaaggacaggatcatctgtgaaaaaattgggtgttagctgctagttctgtctagatttcttgacgtatggtgattagttttttggaggagtttgttcttgtgaagatgatgatgtttgaggaaatggggtactgcggggatcttgatttctttcctgctccgcttaaggaagtggaggtggctgctccacagactgaggcagagcaggtggcggatgatgattatagtgatgaggatattgatgtggatgagctatacaagagagtgtggacggacaagatgaagctgaaaaggctgagagaaatgaatcacgggatggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2032" stop="372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1732" g_stop="1643" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1642" i_stop="1033" i_length="610">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1032" g_stop="672" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="451" r_length="361" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E335626" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1732" e_stop="1643"/>
          <exon e_start="1032" e_stop="672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGTCTCTTAAAAAATGGTCAAATTATTATTCTCCTAAGTAGAGAAAAAGAGTTTAATCAAATTTTTTCAAATATCATAAATTCAGGTACTCACATACTAATAGTTTTTATGTCTCTGTCTTCTTTACAGATATTTGCTTTTGTACTTTCTTCTGTTAATTAGTGATCTTTAATGGAGTTTTTTTTTTGTTGTTGTTGTTGTAAAGATTTGTGCTTTTGCTTAAAGATTGGATTTTTATGTGTTTATGATTCTTGATTGGTTGAATTTACTTTCTTTTATTGTTTATAATTAATAATATGATGTTTATAATCATAGTTGGGTGAGTTACAAGATTCTTTTTACTTTCCTTTCAAAAGAACTTTTTTTTTTTTTCAGATTTCTGTTTGGGGGGTTACATTAATATTGATGGTTTGGATCTGGGAAAATATGTTAATTTTTTTTTTGGATTTTCGCGGGAAATGATTTGTACCTATTTGGTATTTTTGGGGAGATTATCTTGGGTTTTTCTTTAATGTGCAAAACTCTATGGTTTTTTTTTTTTTTATGAGTAATGTAAAAAAGTCCACTTTTTTCTCCCCTTTTAGCTTTTAGTTGAACTTGCCTGTGTATTGAGATATTTACATGTCAACAGTGTTCTGTATTGTTCATATGTAGAACTTTGTAAAGAGATTATCCCTTTTTAAATGTATTTGCAGGATTAAATATCGCGTAATTTGGATTGATGAGTGTTGAGAAAGGACAGGATAATCTGTGAAAAAATTGGGTGTTAGCTGCTAGTTCTGTTTAGATTTCTTGACGTTTGGTGATTAGTTTTTTGGAGGAGTTTGTTCTTGTGAAGATGATGATGTTTGAGGAAATGGGGTTCTGTGGGGATCTTGATTTCTTTCCTGCTCCGCTTAAGGAAGTGGAGGTGGCTGCTCCACAGACTGAGGCAGAGCAGGTGGTGGATGATGATTATAGTGATGAGGATATTGATGTGGATGAGCTAGAGAAGAGAGTGTGGAGGGACAAGATGAAGCTGAAAAGGCTGAAAGAAATGAATCAGGGGATGGAAGA</genome_strand>
        <mrna_strand>CATATAAGCTCTTAAAAAATGGTCAAATTATTATTCTCCTAAGTAGAGAAAAAGAGTTTCATCAAATTTTTTCAAATATCATAAATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAATATCGCGTAATTTGGATTGATGAGTGTTGAGAAAGGACAGGATCATCTGTGAAAAAATTGGGTGTTAGCTGCTAGTTCTGTCTAGATTTCTTGACGTATGGTGATTAGTTTTTTGGAGGAGTTTGTTCTTGTGAAGATGATGATGTTTGAGGAAATGGGGTACTGCGGGGATCTTGATTTCTTTCCTGCTCCGCTTAAGGAAGTGGAGGTGGCTGCTCCACAGACTGAGGCAGAGCAGGTGGCGGATGATGATTATAGTGATGAGGATATTGATGTGGATGAGCTATACAAGAGAGTGTGGACGGACAAGATGAAGCTGAAAAGGCTGAGAGAAATGAATCACGGGATGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333886" ref_strand="+" ref_description="SGN-E333886 [cTOD-24-E8]">
      <seq>acgtcccccaccctttcttctctatttcttacttatctttcttctctgtttccatatagtctcttaaaaaatggtcaaattattattctcctaagtagagaaaaagagtttaatcaaattttttcaaatatcataaattcaggattaaatatcgcgtaatttggattgatgagtgttgagaaaggacaggataatctgtgaaaaaattgggtgttagctgctagttctgtttagatttcttgacgtttggtgattagttttttggaggagtttgttcttgtgaagatgatgatgattgaagaaatggggttctgtggggatcttgatttctttcctgctccgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2084" stop="529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1784" g_stop="1643" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1642" i_stop="1033" i_length="610">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1032" g_stop="829" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="346" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E333886" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1784" e_stop="1643"/>
          <exon e_start="1032" e_stop="829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCCCCCACCCTTTCTTCTCTATTTCTTACTTATCTTTCTTCTCTGTTTCCATATAGTCTCTTAAAAAATGGTCAAATTATTATTCTCCTAAGTAGAGAAAAAGAGTTTAATCAAATTTTTTCAAATATCATAAATTCAGGTACTCACATACTAATAGTTTTTATGTCTCTGTCTTCTTTACAGATATTTGCTTTTGTACTTTCTTCTGTTAATTAGTGATCTTTAATGGAGTTTTTTTTTTGTTGTTGTTGTTGTAAAGATTTGTGCTTTTGCTTAAAGATTGGATTTTTATGTGTTTATGATTCTTGATTGGTTGAATTTACTTTCTTTTATTGTTTATAATTAATAATATGATGTTTATAATCATAGTTGGGTGAGTTACAAGATTCTTTTTACTTTCCTTTCAAAAGAACTTTTTTTTTTTTTCAGATTTCTGTTTGGGGGGTTACATTAATATTGATGGTTTGGATCTGGGAAAATATGTTAATTTTTTTTTTGGATTTTCGCGGGAAATGATTTGTACCTATTTGGTATTTTTGGGGAGATTATCTTGGGTTTTTCTTTAATGTGCAAAACTCTATGGTTTTTTTTTTTTTTATGAGTAATGTAAAAAAGTCCACTTTTTTCTCCCCTTTTAGCTTTTAGTTGAACTTGCCTGTGTATTGAGATATTTACATGTCAACAGTGTTCTGTATTGTTCATATGTAGAACTTTGTAAAGAGATTATCCCTTTTTAAATGTATTTGCAGGATTAAATATCGCGTAATTTGGATTGATGAGTGTTGAGAAAGGACAGGATAATCTGTGAAAAAATTGGGTGTTAGCTGCTAGTTCTGTTTAGATTTCTTGACGTTTGGTGATTAGTTTTTTGGAGGAGTTTGTTCTTGTGAAGATGATGATGTTTGAGGAAATGGGGTTCTGTGGGGATCTTGATTTCTTTCCTGCTCCGCTTA</genome_strand>
        <mrna_strand>ACGTCCCCCACCCTTTCTTCTCTATTTCTTACTTATCTTTCTTCTCTGTTTCCATATAGTCTCTTAAAAAATGGTCAAATTATTATTCTCCTAAGTAGAGAAAAAGAGTTTAATCAAATTTTTTCAAATATCATAAATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAATATCGCGTAATTTGGATTGATGAGTGTTGAGAAAGGACAGGATAATCTGTGAAAAAATTGGGTGTTAGCTGCTAGTTCTGTTTAGATTTCTTGACGTTTGGTGATTAGTTTTTTGGAGGAGTTTGTTCTTGTGAAGATGATGATGATTGAAGAAATGGGGTTCTGTGGGGATCTTGATTTCTTTCCTGCTCCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745851" ref_strand="+" ref_description="SGN-E745851 [GI|47104965]">
      <seq>gacatttgtattgatttgagctagcagtagcacaataatcatagtaggaagctaaacaagaagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtgctgaagcagtttacatgaagtacaaggacccaaaacagccattgaatgttagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagagacatgtagcttcacctcagatcatgaggaaatacttcattgggagtgtactgagtggtggaggaagtgcgccatttccaaaggctactgctgctgactgggtgaagatggtaaatgagattcaaaagggttcactttcaacacgccttggtattcccatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcacaagagacccacagcttgtaaagcggattggagctgcgactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatggggtcggtgctatgaaagctatagtgaagatcatagaattgttcaggcaatgactgagatcattcctggtttacaaggagatgctccggctaactcccgtaagggtgttccgtttgtcggaggaaagacaaaagtagcagcctgtgctaagcactttgtgggagatggtggcactaccaagggcattgatgaaaataacactgttattgatatgaatgggctacttaacatccacatgcctgcatattttgattcaattttaaagggagtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatctcttcatctggagttctacttgctgctcaatctttatatatttttttgtttaagggatatttaatatcataatataagagtttccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13645" stop="19226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13944" g_stop="13977" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13978" i_stop="14118" i_length="141">
            <donor d_prob="0.196" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14119" g_stop="14365" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="281" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15018" g_stop="15222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="486" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15834" g_stop="15924" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="577" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16026" g_stop="16171" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="723" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16372" g_stop="16615" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="967" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1072" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1073" r_stop="1255" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1256" r_stop="1460" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18344" g_stop="18932" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1461" r_stop="2049" r_length="589" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E745851" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2049</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13944" e_stop="13977"/>
          <exon e_start="14119" e_stop="14365"/>
          <exon e_start="15018" e_stop="15222"/>
          <exon e_start="15834" e_stop="15924"/>
          <exon e_start="16026" e_stop="16171"/>
          <exon e_start="16372" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTGTATTGATTTGAGCTAGCAGTAGCACAGTGAGTTCCTATCCATGGAGTCCTTCTAATAGCTCTGATTTTTCATGTGTTTTTTCAAGTTATTTCTTCTTCAACTAATGATTTCTACTATTATTTGTTCAACCTACTAATTTCAGCTCTTCATTTTTATTTTTTTTACAGATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTCAAGGACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAGCAGCA</genome_strand>
        <mrna_strand>GACATTTGTATTGATTTGAGCTAGCAGTAGCACA.............................................................................................................................................ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA........................................................................................................................................................................................................GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAAGGGATATTTAATATCATAATATAAGAGTTTCCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312240" ref_strand="+" ref_description="SGN-E312240 [cTOA-5-D9]">
      <seq>ttgatttgagctagcagtagcacaataatcatagtaggaagctaaacaagaagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtgctgaagcagtttacatgaagtacaaggacccaaaacagccattgaatgttagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagagacatgtagcttcacctcagatcatgaggaaatacttcattgggagtgtactgagtggtggaggaagtgcgccatttccaaaggctactgctgctgactgggtgaagatggtaaatgagattcaaaagggttcactttcaacacgccttggtattcccatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcacaaggtaagggaaattgcgggtgcatatattcatttcagtagcatttttcacagatcttgaaatgtttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13654" stop="15589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13954" g_stop="13977" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13978" i_stop="14118" i_length="141">
            <donor d_prob="0.196" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14119" g_stop="14365" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="271" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15018" g_stop="15289" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="543" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E312240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13954" e_stop="13977"/>
          <exon e_start="14119" e_stop="14365"/>
          <exon e_start="15018" e_stop="15289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGAGCTAGCAGTAGCACAGTGAGTTCCTATCCATGGAGTCCTTCTAATAGCTCTGATTTTTCATGTGTTTTTTCAAGTTATTTCTTCTTCAACTAATGATTTCTACTATTATTTGTTCAACCTACTAATTTCAGCTCTTCATTTTTATTTTTTTTACAGATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACA</genome_strand>
        <mrna_strand>TTGATTTGAGCTAGCAGTAGCACA.............................................................................................................................................ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268599" ref_strand="+" ref_description="SGN-E268599 [cLEI-13-N21]">
      <seq>aataatcatagtaggaagctaaacaagaagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtgctgaagcagtttacatgaagtacaaggacccaaaacagccattgaatgttagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagagacatgtagcttcacctcagatcatgaggaaatacttcattgggagtgtactgagtggtggaggaagtgcgccatttccaaaggctactgctgctgactgggtgaagatggtaaatgagattcaaaagggttcactttcaacacgccttggtattcccatgaattatggaattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13819" stop="15453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14035" g_stop="14035" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14036" i_stop="14118" i_length="83">
            <donor d_prob="0.248" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14119" g_stop="14365" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="248" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15018" g_stop="15153" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="384" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E268599" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14035" e_stop="14035"/>
          <exon e_start="14119" e_stop="14365"/>
          <exon e_start="15018" e_stop="15153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATTTCTTCTTCAACTAATGATTTCTACTATTATTTGTTCAACCTACTAATTTCAGCTCTTCATTTTTATTTTTTTTACAGATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGC</genome_strand>
        <mrna_strand>A...................................................................................ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGAATTATGGAATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478027" ref_strand="+" ref_description="SGN-E478027 [cSTD-2-D12]">
      <seq>atttctactattatttgttgaacctactaatttcagctattcatttttttgtttacagatactcattgtaggaagctgaacaggcagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtactgaagcagtttacatgaagtacaaggacccaaagcagccattgaatgtcagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagaaacatgtagcttcacctcagatcatgaagaaatacttcattgggagtgtactgagtggtggaggaagtgtgccatttccaaaggctactgctgcggactgggtgaagatggtgaatgcgattcaaaagggttcactatcaacacgccttggtattccaatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcacaagagacccacagcttgtgaagcggattggagctgcgactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatggggtcggtgctacgaaagctacagtgaagatcatagaattgttcaggcaatgactgagatcattcctggtttacaaggagatgctncggctaactccccgtagggtgttccgtttgtcgcaggaaagacaaagtagcagcctgtgctaagcactttgtgggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13803" stop="16711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14058" g_stop="14365" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15018" g_stop="15222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="510" r_length="205" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15834" g_stop="15924" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="601" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16026" g_stop="16171" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="747" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.917" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16372" g_stop="16411" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="786" r_length="39" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E478027" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14058" e_stop="14365"/>
          <exon e_start="15018" e_stop="15222"/>
          <exon e_start="15834" e_stop="15924"/>
          <exon e_start="16026" e_stop="16171"/>
          <exon e_start="16372" e_stop="16411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTACTATTATTTGTTCAACCTACTAATTTCAGCTCTTCATTTTTATTTTTTTTACAGATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTCAAGGACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGAT</genome_strand>
        <mrna_strand>ATTTCTACTATTATTTGTTGAACCTACTAATTTCAGCTATTCA--TTT-TTTTGTTTACAGATACTCATTGTAGGAAGCTGAACAGGCAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTACTGAAGCAGTTTACATGAAGTACAAGGACCCAAAGCAGCCATTGAATGTCAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAAACATGTAGCTTCACCTCAGATCATGAAGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGTGCCATTTCCAAAGGCTACTGCTGCGGACTGGGTGAAGATGGTGAATGCGATTCAAAAGGGTTCACTATCAACACGCCTTGGTATTCCAATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCACAGCTTGTGAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGTCGGTGCTACGAAAGCTACAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTNCGGCTAACTCCCCGTAGGGTGTTCCGTTTGTCGCAGGAAA........................................................................................................................................................................................................GAC-AAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427882" ref_strand="+" ref_description="SGN-E427882 [STM-49-C16]">
      <seq>atttctactattatttgttgaacctactaatttcagctattcatttttttgtttacagatactcattgtaggaagctgaacaggcagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtactgaagcagtttacatgaagtacaaggacccaaagcagccattgaatgtcagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagaaacatgtagcttcacctcagatcatgaagaaatacttcattgggagtgtactgagtggtggaggaagtgtgccatttccaaaggctactgctgcggactgggtgaagatggtgaatgcgattcaaaagggttcactatcaacacgccttggtattccaatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13803" stop="15520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14058" g_stop="14365" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15018" g_stop="15220" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="508" r_length="203" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E427882" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14058" e_stop="14365"/>
          <exon e_start="15018" e_stop="15220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTACTATTATTTGTTCAACCTACTAATTTCAGCTCTTCATTTTTATTTTTTTTACAGATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACA</genome_strand>
        <mrna_strand>ATTTCTACTATTATTTGTTGAACCTACTAATTTCAGCTATTCA--TTT-TTTTGTTTACAGATACTCATTGTAGGAAGCTGAACAGGCAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTACTGAAGCAGTTTACATGAAGTACAAGGACCCAAAGCAGCCATTGAATGTCAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAAACATGTAGCTTCACCTCAGATCATGAAGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGTGCCATTTCCAAAGGCTACTGCTGCGGACTGGGTGAAGATGGTGAATGCGATTCAAAAGGGTTCACTATCAACACGCCTTGGTATTCCAATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441800" ref_strand="+" ref_description="SGN-E441800 [cSTA-31-G20]">
      <seq>ctcattgtaggaagctgaacaggcagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtactgaagcagtttacatgaagtacaaggacccaaagcagccattgaatgtcagaatcagggatttgatgaacagaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13823" stop="14585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14122" g_stop="14285" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E441800" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14122" e_stop="14285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAG-AATGAG</genome_strand>
        <mrna_strand>CTCATTGTAGGAAGCTGAACAGGCAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTACTGAAGCAGTTTACATGAAGTACAAGGACCCAAAGCAGCCATTGAATGTCAGAATCAGGGATTTGATGAACAGAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719728" ref_strand="+" ref_description="SGN-E719728 [FC08CH05]">
      <seq>gtaggaagctaaacaagaagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtgctgaagcagtttacatgaagtacaaggacccaaaacagccattgaatgttagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcaaatgacccaaattgagagacatgtagcttcacctcaaatcatgaggaaatacttcattgggagtgtactgagtggtggaggaagtgcgccatttccaaaggctactgctgctgactgggtgaagatggtaaatgagattcaaaagggttcactttcaacacgccttggtattcccatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcacaagagacccacagcttgtaaagcggattggagctgcaactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatggggtcggtgctatgaaagctatagtgaagatcatagaattgttcaggcaatgactgagatcattcctggtttacaaggagatgctccggctaactcccgtaagggtgttccgtttgtcggaggaaagacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13828" stop="16472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14128" g_stop="14365" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15018" g_stop="15222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="443" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15834" g_stop="15924" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="534" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16026" g_stop="16171" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="680" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16372" g_stop="16378" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="687" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E719728" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14128" e_stop="14365"/>
          <exon e_start="15018" e_stop="15222"/>
          <exon e_start="15834" e_stop="15924"/>
          <exon e_start="16026" e_stop="16171"/>
          <exon e_start="16372" e_stop="16378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTCAAGGACAAAA</genome_strand>
        <mrna_strand>GTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAAATGACCCAAATTGAGAGACATGTAGCTTCACCTCAAATCATGAGGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCAACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA........................................................................................................................................................................................................GACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400115" ref_strand="+" ref_description="SGN-E400115 [cSTC-4-L4]">
      <seq>ggaagctgaacaggcagattaacaatggggaaatttgcaataacaatgatgggttttctgcttttgtgtttctgtactgaagcagtttacatgaagtacaaggacccaaagcagccattgaatgtcagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagaaacatgtagcttcacctcagatcatgaagaaatacttcattgggagtgtactgagtggtggaggaagtgtgccatttccaaaggctactgctgcggactgggtgaagatggtgaatgcgattcaaaagggttcactatcaacacgccttggtattccaatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaattttttccacaccaatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13831" stop="15507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14131" g_stop="14365" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15018" g_stop="15207" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="427" r_length="192" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E400115" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14131" e_stop="14365"/>
          <exon e_start="15018" e_stop="15207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAA-TTTTTCCACA-CAATGTTGG</genome_strand>
        <mrna_strand>GGAAGCTGAACAGGCAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTACTGAAGCAGTTTACATGAAGTACAAGGACCCAAAGCAGCCATTGAATGTCAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAAACATGTAGCTTCACCTCAGATCATGAAGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGTGCCATTTCCAAAGGCTACTGCTGCGGACTGGGTGAAGATGGTGAATGCGATTCAAAAGGGTTCACTATCAACACGCCTTGGTATTCCAATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTTCCACACCAATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252416" ref_strand="+" ref_description="SGN-E252416 [cLEG-12-N15]">
      <seq>tctgcttttgtgtttctgtgctgaagcagtttacatgaagtacaaggacccaaaacagccattgaatgttagaatcagggatttgatgaacagaatgagccttgaagagaaaataggtcagatgacccagattgagagacatgtagcttcacctcagatcatgaggaaatacttcattgggagtgtactgagtggtggaggaagtgcgccatttccaaaggctactgctgctgactgggtgaagatggtaaatgagattcaaaagggttcactttcaacacgccttggtattcccatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcacaagagacccacagcttgtaaagcggattggagctgcgactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatggggtcggtgctatgaaagctatagtgaagatcatagaattgttcaggcaatgactgagatcattcctggtttacaaggagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13887" stop="16429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14187" g_stop="14365" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15018" g_stop="15222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="384" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15834" g_stop="15924" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="475" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16026" g_stop="16129" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="579" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E252416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14187" e_stop="14365"/>
          <exon e_start="15018" e_stop="15222"/>
          <exon e_start="15834" e_stop="15924"/>
          <exon e_start="16026" e_stop="16129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTGGTAAGCGCTCCCAAACAAAAATCTTGAGGTTTTACATAAACCCTTATCTAGAAATTATTTTATGAAAGTTATACATTTGAAGCAATGTATAAATGTATGTGTGATAAAATTTGCCTGTAGAAAATATAGAGAAAATTGCCAGGATGTGACTCACTTTGCAGCTTACCGAGTACGTAGATCAGGGTAGACGGGTAGTAGAGAATTGTCTTGCTTATCCTTCTGTATTGGTAGTCCTAGTAATTCTATCTACTATCTCTTGTACTTTGATTATCGTAATATTTTTTTGTAGTTACCCTATCTTTTATGAATGCTTTGTTATGCAATCTATTGTATTTTGCCGTATGGTGGTATATTGTTGTTGTTGTTGTTGTTTACTGTTGGACTAAGATGAGTTTAAATGGAACAGCATGGTTGGTGTCTTGGTGAGGATTCATATAGCTGACCCAGGTTGCTTAGGATTGAGATGTAGTTGTTGTAATGTATATGAATATATAAAGTTTGTATCAGTTGCTGCGCAAGAGTGTTAGGTGTTGTTGTACTCTGCAATCTGCATTCAAGGACTTGAACTTTTAGATTTGCCGTTGTCTTTGTGGTTGAGTGAAAGGCTACCTTCTATGGTTTTAGTGAAGTGTGAATAATTTGATTGTGGCAGGGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGC</genome_strand>
        <mrna_strand>TCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471141" ref_strand="+" ref_description="SGN-E471141 [cSTB-22-L1]">
      <seq>aaaagggttcactatcaacacgccttggtattccaatgatttatggaattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttccacacaatgttggccttggagtcacaagagacccacagcttgtgaagcggattggagctgcgactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatggggtcggtgctacgaaagctacagtgaagatcatagaattgttcaggcaatgactgagatcattcctggtttacaaggagatgctccggctaactcccgtaagggtgttccgtttgtcgcaggaaagtacgtatctctagtctttcacatctttatcctttctgactccgtttgtaagttcatttgactgcaaagtattgtgatttaattttcatctagctgtaacattcgtcatttcgttacacatcctcatccatatttcgcctttacgtctatctagtatatgctctccaatgacatgattgtgcatttctaaatgtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14799" stop="16668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15099" g_stop="15222" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15834" g_stop="15924" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="215" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16026" g_stop="16368" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="559" r_length="344" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E471141" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15099" e_stop="15222"/>
          <exon e_start="15834" e_stop="15924"/>
          <exon e_start="16026" e_stop="16368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCG-TTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTC</genome_strand>
        <mrna_strand>AAAAGGGTTCACTATCAACACGCCTTGGTATTCCAATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCACAGCTTGTGAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGTCGGTGCTACGAAAGCTACAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGCAGGAAAGTACGTATCTCTAGTCTTTCACATCTTTATCCTTTCTGACTCCGTTTGTAAGTTCATTTGACTGCAAAGTATTGTGATTTAATTTTCATCTAGCTGTAACATTCGTCATTTCGTTACACATCCTCATCCATATTTCGCCTTTACGTCTATCTAGTATATGCTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478264" ref_strand="+" ref_description="SGN-E478264 [cSTD-3-J16]">
      <seq>aattgatgcagtgcacgggcacaacaatgtctacaaagcaacaatttttcccacaatgttggccttggagtcacaaggtaaaggaaatcgcggttgcatatattcatttcagcagcattcttcacagattttgaaatgtttatactaatgtgaaatttgaagaaacatacatagatcacattgcatcaacatggggggaggggctgtgagatggctgaaatgttgatttagaaaaattccgtgtctctcatcaggagtagttcgagaggatcaattacatcctctgctggaattttgtctttgaactgatcaattttgcttacataaatgggggtgatgctaagacttccttccctatctatgtttactgatcattatgaggatggaaccatgatttcaagagtctgtctggaaatttattttgccagaagtgttactttcaggaaatttgggaagatcatactcaaataagagatattttgttgatatataagagattttaaaatttatttgtattttacaacttgctctttaagttcttttattgcatttactgatacttggaataatctcaactttgcaatagagacccacagcttgtgaagcggattggagctgcgactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatgggggtcggtgctacgaaagctacagtgaagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14845" stop="16379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15145" g_stop="15319" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15320" i_stop="15419" i_length="100">
            <donor d_prob="0.951" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15420" g_stop="15924" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="677" r_length="503" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16026" g_stop="16079" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="732" r_length="55" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E478264" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15145" e_stop="15319"/>
          <exon e_start="15420" e_stop="15924"/>
          <exon e_start="16026" e_stop="16079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGA-TTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGAT-GGGGTCGGTGCTATGAAAGCTATAGTGAAGATCAT</genome_strand>
        <mrna_strand>AATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCC-CACAATGTTGGCCTTGGAGTCACAAGGTAAAGGAAATCGCGGTTGCATATATTCATTTCAGCAGCATTCTTCACAGATTTTGAAATGTTTATACTAATGTGAAATTTGAAGAAACATACATAG....................................................................................................ATCACATTGCATCAACATGGGGGGAGGGGCTGTGAGATGGCTGAAATGTTGATTTAGAAAAATTCCGTGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGAACTGATCAATTTTGC-TTACATAAATGGGGGTGATGCTAAGACTTCCTTCCCTATCTATGTTTACTGATCATTATGAGGATGGAACCATGATTTCAAGAGTCTGTCTGGAAATTTATTTTGCCAGAAGTGTTACTTTCAGGAAATTTGGGAAGATCATACTCAAATAAGAGATATTTTGTTGATATATAAGAGATTTTAAAATTTA-TTTG-TATTTTACAACTTGCTCTTTAAGTTCTTTTATTGCATTTACTGATACTTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTGAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGGTCGGTGCTACGAAAGCTACAGTGAAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617462" ref_strand="+" ref_description="SGN-E617462 [66312]">
      <seq>acaaagcaacaatttttccacacaatgttggccttggagtcacaagagacccacagcttgtgaagcggattggagctgcgactgcccttgaagtcagagccacaggaatcccttacacttttgcaccgtgcatcgcagtctgcagagatccaagatggggtcggtgctacgaaagctacagtgaagatcatagaattgttcaggcaatgactgagatcattcctggtttacaaggagatgctccggctaactcccgtaagggtgttccgtttgtcgcaggaaagacaaaagtagcagcctgtgctaagcactttgtgggcgatggtggcactaccaagggcattgatgaaaataacactgttatcgatgtgaatgggctacttaacatccacatgcctgcctatattgattcaattttaaagggagtttccacaataatggtctcttactcgagctggaatggcaagaggatgcatgcaaaccgtgatctaatcactggctttctcaagggaaagctcaagttcagaggttttgtcatatcagattgggaggcaattgacaagattactganacacccgtgcaaattactcttactctggtcaagctggagttcttgctggactcgacatgattatgggtcaggaaaacttggtcgaatttctttgatgatctggctttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14877" stop="17323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="15222" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15834" g_stop="15924" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="137" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16026" g_stop="16171" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16372" g_stop="16615" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="527" r_length="244" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="631" r_length="104" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16974" g_stop="17023" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="682" r_length="51" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E617462" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="15222"/>
          <exon e_start="15834" e_stop="15924"/>
          <exon e_start="16026" e_stop="16171"/>
          <exon e_start="16372" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAGGTTAGTGCTTGTGACATATAGTCTATACTTAAATATTTGATCACAATAGGGCTTGAAAGTTTATTCTTTTCTCATTATTGTTCTGTGCTGTGGATTTTAAACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCAGTGAGTAGTATCACATTATATACAGTTTACTTATTGTCTATATTTGATAGACTTCATCATAGGTCTTGGTGTTTAGTGTTGCTTGATACTTGTTGTCACAGGTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTCAAGGACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTC-TTGATGATCTGGCTTTCCA</genome_strand>
        <mrna_strand>ACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCACAGCTTGTGAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA.....................................................................................................GTCTGCAGAGATCCAAGATGGGGTCGGTGCTACGAAAGCTACAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGCAGGAAA........................................................................................................................................................................................................GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGCGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATCGATGTGAATGGGCTACTTAACATCCACATGCCTGCCTATATTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCGAGCTGGAATGGCAAGAGGATGCATGCAAACCGTGATCTAATCACTGGCTTTCTCAAGGGAAAGCTCAAGTTCAGA........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGANACACC-CGTGCAAATTACTCTTACTCTGGTCAAGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAAAACTTGGTCGAATTTCTTTGATGATCTGGCTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274536" ref_strand="+" ref_description="SGN-E274536 [cLEN-11-B14]">
      <seq>tcaggcaatgactgagatcattcctggtttacaaggagatgctccggctaactcccgtaagggtgttccgtttgtcggaggaaagacaaaagtagcagcctgtgctaagcactttgtgggagatggtggcactaccaagggcattgatgaaaataacactgttattgatatgaatgggctacttaacatccacatgcctgcatattttgattcaattttaaagggagtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15788" stop="17407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16088" g_stop="16171" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16372" g_stop="16615" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="328" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="433" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16974" g_stop="17107" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="567" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E274536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16088" e_stop="16171"/>
          <exon e_start="16372" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTCAAGGACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTT</genome_strand>
        <mrna_strand>TCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA........................................................................................................................................................................................................GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215129" ref_strand="+" ref_description="SGN-E215129 [cLEC-78-F6]">
      <seq>taactcccgtaagggtgttccgtttgtcggaggaaagacaaaagtagcagcctgtgctaagcactttgtgggagatggtggcactaccaagggcattgatgaaaataacactgttattgatatgaatgggctacttaacatccacatgcctgcatattttgattcaattttaaagggagtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactccacatgattatgggtcacgagaatttggttgaatttcttgatgatctggctttccaagaaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15836" stop="17409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16136" g_stop="16171" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16372" g_stop="16615" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="280" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="385" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16974" g_stop="17109" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="521" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E215129" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16136" e_stop="16171"/>
          <exon e_start="16372" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTCAAGGACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTG</genome_strand>
        <mrna_strand>TAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA........................................................................................................................................................................................................GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCCACATG.....................................................................................................................................................................ATTATGGGTCACGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGAAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274148" ref_strand="+" ref_description="SGN-E274148 [cLEN-8-I12]">
      <seq>agcctgtgctaagcactttgtgggagatggtggcactaccaagggcattgatgaaaataacactgttattgatatgaatgggctacttaacatccacatgcctgcatattttgattcaattttaaagggagtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16084" stop="17399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16384" g_stop="16615" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="337" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17099" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="463" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E274148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16384" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATG</genome_strand>
        <mrna_strand>AGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201710" ref_strand="+" ref_description="SGN-E201710 [cLEC-11-C11]">
      <seq>ggcactaccaagggcattgatgaaaataacactgttattgatatgaatgggctacttaacatccacatgcctgcatattttgattcaattttaaagggagtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16115" stop="17621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16415" g_stop="16615" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="306" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="489" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17249" g_stop="17321" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="562" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E201710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16415" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACC</genome_strand>
        <mrna_strand>GGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213875" ref_strand="+" ref_description="SGN-E213875 [cLEC-76-D24]">
      <seq>cttaacatccacatgcctgcatattttgattcaattttaaagggagtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaaactacattttaaatgctgtgaaaaaacagntcatccatctacacaagtagtctaccangagaatccagacgtaaactttgttaagtccaaccactttcctatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16169" stop="18754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16469" g_stop="16615" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="252" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="435" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="640" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18344" g_stop="18454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="749" r_length="109" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E213875" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16469" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGG-AACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCA</genome_strand>
        <mrna_strand>CTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTAC-ATTTTAAATGCTGTGAAAAA-ACAGNTCATCCATCTACACAAGTAGTCTACCANGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCAC-TTTCCTATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275801" ref_strand="+" ref_description="SGN-E275801 [cLEN-18-D5]">
      <seq>agtttccacaataatggtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaagggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16213" stop="17423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16513" g_stop="16615" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="208" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17123" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="358" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E275801" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16513" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCT</genome_strand>
        <mrna_strand>AGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAAG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371166" ref_strand="+" ref_description="SGN-E371166 [TUS-28-P13]">
      <seq>gtctcttactcaagctggaatggaaagaggatgcatgcaaaccgtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16229" stop="18700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16529" g_stop="16615" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="192" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="375" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="580" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18344" g_stop="18400" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="637" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E371166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16529" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCT</genome_strand>
        <mrna_strand>GTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271792" ref_strand="+" ref_description="SGN-E271792 [cLEM-8-M23]">
      <seq>gtctcttactcaagctggaatggaaagaggatgcatgcaaacggtgacctaatcactggctttctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16229" stop="18665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16529" g_stop="16615" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="192" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="375" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="580" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18344" g_stop="18365" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="602" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E271792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16529" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGT</genome_strand>
        <mrna_strand>GTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACGGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706614" ref_strand="+" ref_description="SGN-E706614 [FA30BG11]">
      <seq>ctcaagggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggcccaggtgttgctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16292" stop="18980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16592" g_stop="16615" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="129" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="312" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="517" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18344" g_stop="18680" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="854" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E706614" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16592" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGT</genome_strand>
        <mrna_strand>CTCAAGGGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCCAGGTGTTGCTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250469" ref_strand="+" ref_description="SGN-E250469 [cLEG-18-E22]">
      <seq>ggaaagctgaagttcaggggttttgtcatatcagattgggaggcaattgacaagattactgaaccgcctcgtgcaaattactcttactctgttcaggctggagttcttgctggactcgacatgattatgggtcaggagaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16391" stop="18701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16598" g_stop="16615" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16704" g_stop="16808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="123" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16974" g_stop="17156" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="306" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="511" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18344" g_stop="18401" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="569" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E250469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16598" e_stop="16615"/>
          <exon e_start="16704" e_stop="16808"/>
          <exon e_start="16974" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCTGAAGTTCAGGGTAATAGAGCAACTCTCTTTTAAGTTCTATTGGTCGAATATAGTGAGGAGATTGCTGATTATCACATTCTCTGTTACCTTTATTTCAGGGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATGGTCAGTCTGAAGGATTAGTTCCAAAGTTGTCTGTTATATAAAATACATTTACTAATTTCCCATCTTAATTATCACCTTATCACCTGACACAATTTGATCGTCATTAATCAACTCAAGCTGAAATCACTTCTCACTTCCTAATGTATTTAGTTTATATTATTGCAGATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTA</genome_strand>
        <mrna_strand>GGAAAGCTGAAGTTCAGG........................................................................................GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG.....................................................................................................................................................................ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207125" ref_strand="+" ref_description="SGN-E207125 [cLEC-30-G3]">
      <seq>gaatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16688" stop="18814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16988" g_stop="17156" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="374" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18344" g_stop="18514" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="545" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E207125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16988" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCA</genome_strand>
        <mrna_strand>GAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252709" ref_strand="+" ref_description="SGN-E252709 [cLEG-16-G24]">
      <seq>aatttggttgaatttcttgatgatctggctttccaagtaaggaacaatatcattcccatgagcaggatagatgatgcagttatgagaatactaagggttaagtttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16689" stop="18935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16989" g_stop="17156" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="373" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18344" g_stop="18635" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="665" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E252709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16989" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGT</genome_strand>
        <mrna_strand>AATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398769" ref_strand="+" ref_description="SGN-E398769 [TUS-46-K20]">
      <seq>ttgtcatgggtctctttgagaacccattggctgatctcagcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcagagctgaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16792" stop="18876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17092" g_stop="17156" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="270" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18344" g_stop="18576" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="503" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E398769" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17092" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTT</genome_strand>
        <mrna_strand>TTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAGAGCTGACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256345" ref_strand="+" ref_description="SGN-E256345 [cLEG-37-J17]">
      <seq>catgggtctctttgagaacccattggctgatctcagcttagcaaaccaactatgaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcatgcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaggtagtctaccaggagaatccagacgtaaactgtgttaagtccaaccacttttcctatgccattgatgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16796" stop="18840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17096" g_stop="17156" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="266" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18344" g_stop="18540" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="463" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E256345" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17096" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATC</genome_strand>
        <mrna_strand>CATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTATGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATGCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAGGTAGTCTACCAGGAGAATCCAGACGTAAACTGTGTTAAGTCCAACCACTTTTCCTATGCCATTGATGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274057" ref_strand="+" ref_description="SGN-E274057 [cLEN-8-N7]">
      <seq>agcttagcaaaccaactaggaagccaggaacacagagagttagcaagagaagcagtgaggaaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16830" stop="18814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17130" g_stop="17156" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17249" g_stop="17453" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="232" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18344" g_stop="18514" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="403" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E274057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17130" e_stop="17156"/>
          <exon e_start="17249" e_stop="17453"/>
          <exon e_start="18344" e_stop="18514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTAGCAAACCAACTAGGAAGCCAGGTAATTTTTCTGTTCTGGTGTAATATAAATTCTCTTCACCTGATTTTTTCTTGACTTGATTCCTTTCTTTTCAACTTAAATTCTTTCTGTAGGAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCA</genome_strand>
        <mrna_strand>AGCTTAGCAAACCAACTAGGAAGCCAG............................................................................................GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214696" ref_strand="+" ref_description="SGN-E214696 [cLEC-79-J1]">
      <seq>aaatcacttgtactattgaagaatggtaaagttactaaccagccactacttccccttccgaaaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatccttttgtttccttttggatttgggctcactactaagcctgtgaagagctaaaatctcttcatctggaggtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16982" stop="19151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17282" g_stop="17453" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18344" g_stop="18851" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="681" r_length="509" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E214696" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17282" e_stop="17453"/>
          <exon e_start="18344" e_stop="18851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCC-TTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTAC</genome_strand>
        <mrna_strand>AAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTTGTTTCCTTTTGGATTTGGGCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586094" ref_strand="-" ref_description="SGN-E586094 [73519]">
      <seq>attgaagaatggaaaagttacctagccagccactgctttccccttccgaaaaaagtgacaaagatactggtcgcctggcattcatgctgacaactttgggttaccaatgtggaggctgggactataagttggcagggaattggaggcaatgatcgttaccacaggaacctacaattttaaatgctgtgaaaaacacagtccatccatctacacaagtagtctaccaggacaatccagacgtaaactttgttaagtccaaccacttctcctatgccattgttgtcgtgggtgagacaccctatgcagagatgtttggcgatagtgcaaaacttacaattgctgaacctggtccaagcatcatttccaatgtctgtggggttgtgaaatgtgtggtagttgtcgtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcgcgcacttggttcaagtcagttgatcagcttcccatgaatgttggtgatccacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatttcttcctctggcgttctacttgctgctcaatctttatatttttttgtttgtttaatggatatttaatatcataatataagagtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16996" stop="19217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17296" g_stop="17453" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.928" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18344" g_stop="18917" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="741" r_length="577" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E586094" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586094" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17296" e_stop="17453"/>
          <exon e_start="18344" e_stop="18917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGAATGGTAAAGTTA-CTAACCAGCCACTAC-TTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCG-CTGGCATTCATGCTGACAA-TTTGGGTTACCAGTGTGGAGGCT-GGACTATAAGTTGGCAGGGAATTGGAGGCAATGATC-TTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAA-CTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATA-TATTTT-TTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTAC</genome_strand>
        <mrna_strand>ATTGAAGAATGGAAAAGTTACCTAGCCAGCCACTGCTTTCCCCTTCCGAAAAAAGTGACAAAGATACTGGTCGCCTGGCATTCATGCTGACAACTTTGGGTTACCAATGTGGAGGCTGGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCGTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTACAATTTTAAATGCTGTGAAAAACACAGTCCATCCATCTACACAAGTAGTCTACCAGGACAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTCTCCTATGCCATTGTTGTCGTGGGTGAGACACCCTATGCAGAGATGTTTGGCGATAGTGCAAAACTTACAATTGCTGAACCTGGTCCAAGCATCATTTCCAATGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTCGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCGCGCACTTGGTTCAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCCACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATTTCTTCCTCTGGCGTTCTACTTGCTGCTCAATCTTTATATTTTTTTGTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371165" ref_strand="+" ref_description="SGN-E371165 [TUS-28-P13](-)">
      <seq>aaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatctcttcatctggagttctacttgctgctcaatctttatatatttttttgtttaatggatatttaatatcataatataagagtttacaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17043" stop="19226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17343" g_stop="17453" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18344" g_stop="18933" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="701" r_length="590" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E371165" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17343" e_stop="17453"/>
          <exon e_start="18344" e_stop="18933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAGCAGCAT</genome_strand>
        <mrna_strand>AAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264145" ref_strand="-" ref_description="SGN-E264145 [cLEG-64-H5]">
      <seq>aaaaagtgacgaagatacttgtcgctggcattcatgctgacaatttgggttaccagtgtggaggctggactataagttggcagggaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatctcttcatctggagttctacttgctgctcaatctttatatatttttttgtttaatggatatttaatatcataatataagagtttacaagaaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17043" stop="19226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17343" g_stop="17453" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18344" g_stop="18926" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="694" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="711"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E264145" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264145" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17343" e_stop="17453"/>
          <exon e_start="18344" e_stop="18926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAA</genome_strand>
        <mrna_strand>AAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275447" ref_strand="+" ref_description="SGN-E275447 [cLEN-10-H20]">
      <seq>gaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatctcttcatctggagttctacttgctgctcaatctttatatatttttttgtttaatggatatttaatatcataatataagagtttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17127" stop="19226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17427" g_stop="17453" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18344" g_stop="18927" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="611" r_length="584" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E275447" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17427" e_stop="17453"/>
          <exon e_start="18344" e_stop="18927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAG</genome_strand>
        <mrna_strand>GAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275608" ref_strand="+" ref_description="SGN-E275608 [cLEN-10-H18]">
      <seq>gaattggaggcaatgatcttattacaggaactacaattttaaatgctgtgaaaaagacagtccatccatctacacaagtagtctaccaggagaatccagacgtaaactttgttaagtccaaccacttttcctatgccattgttgttgtgggtgagacaccctatgcggagatgtttggcgatagtgcaaagcttaccattgctgaacctggtccaagcatcatctccagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatctcttcatctggagttctacttgctgctcaatctttatatatttttttgtttaatggatatttaatatcataatataagagtttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17127" stop="19226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17427" g_stop="17453" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18344" g_stop="18927" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="611" r_length="584" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E275608" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17427" e_stop="17453"/>
          <exon e_start="18344" e_stop="18927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGAGGCAATGATCTTATTACAGGTATCTTTCTGTTATCTTTCAGTTAGAAGTCTTCACAGTTCTTTGAGCCAGTGCAAATCAAAATCTCGTCACTGCATAAACCTCAGAAGTTATTTTGAACTATTGAGATCCCACTTTACAACTTAATATGTTTGTGATAGATTTCTGTCTTTATTTCATCTGTCACTTAAGTACAAATAAACCTCAACTTTTATTGTGTGCATTTTGAATAATGAACAGTAAATGCAACTGATTTTTTCAACACCTTAGAATTTTGTAAGACACATACATGTGGCTTCAACCAAAGTGAAAAAGAACAAATTGGACTCTAATTTAGTAGGGCTATTTGTATCTTAGCACCATTTTTTAAGTGGCATTAGTTTAAAGATATATTTTAAGTATTGGTTAAAAATGGGTGAGAGAGATATTTTCTCAAAGGGTGATATCAAGGGTATAATAACATACTCATTTTCTATTTTGTTGATGAAAAGGTACAGACTCTTTTTAGTAAGTTACCAAAAGAAGTACATATACATCAGAGAAAGGAACATCCTTTTATATACTGGAAGAGTACAAGAGGTCTAACAGTGAAGCTTTTTCTTAAAGTATAATGTAGCTCGGGATGGAGTAAACTGGGAAAGGTGAATCAAATAGGCTTTGACAGCGTCCTCGGAAGGACTTAGATAATTGGATATTGCTTGGCTACTTCTATAAACTTTAGACCATATCTTTCTGGTTCCAGAACAGTTGCACTGTTTAACGAATAATCTACAAGCTGGACGAAAAGATTGATGCTACATTTGATTTTTTATTTTAGAGATCGTGCTTGATGATCGTCAAATTTTTAAATGAGAATTGTCTTTAATTGTAGCATCAGACTGAATTAGCTTTCATATATATGACAAATACAGGAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAG</genome_strand>
        <mrna_strand>GAATTGGAGGCAATGATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427883" ref_strand="+" ref_description="SGN-E427883 [STM-49-C16]">
      <seq>ttttttttttttgtaaactcttattctatgatattaaatattcattaaacaaaaaaaatatataaagattgagcagcaagtataacgccagaggaagaatttttagctcttcacaggcttagtagtgagaccaaatccaaaaggaaacaaaggatcataatgtggatcaccaacattcatgggaagctgatcaactgacttgaaccaagtgcgcgcgagtttgcctgtgaatccatagtcaccaaacagggcatcagcaacaccttggccttcacttcccggaagccaagcagccacaagggcgtctatgtttgcaagatacggttcaatcacaactggacgcccagagatgacaactaccacacatttcacaaccccacagacattggaaatgatgcttggaccaggttcagcaattgtaagttttgcactatcgccaaacatctctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19226" stop="18179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18929" g_stop="18479" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E427883" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18929" e_stop="18479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTTGTAAACTCTTATATTATGATATTAAATATCCATTAAAC-AAAAAAATATATAAAGATTGAGCAGCAAGTAGAACTCCAGATGAAGAGATTTTAGCTCTTCACAGGCTTAGTAGTGAGACCAAATCCAAAAGGAAACAAAGGATCATAATGTCGATCACCAACATTCATGGGAAGCTGATCAACTGACTTAAACCAAGTGCGGGCGAGTTTGCCTGTGAATCCATAGTCACCAAACAGGACATCAGCAACACCTTGGCCTTCACTTCCCGGAAGCCAAGCAGCCACAAGGGCGTCTATGTTTGCAAGATACGGTTCAATCACAACTGGACGCCCAGAGACCACAACTACCACACATTTCACAACCCCACAGACACTGGAGATGATGCTTGGACCAGGTTCAGCAATGGTAAGCTTTGCACTATCGCCAAACATCTCCGCAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGTAAACTCTTATTCTATGATATTAAATATTCATTAAACAAAAAAAATATATAAAGATTGAGCAGCAAGTATAACGCCAGAGGAAGAATTTTTAGCTCTTCACAGGCTTAGTAGTGAGACCAAATCCAAAAGGAAACAAAGGATCATAATGTGGATCACCAACATTCATGGGAAGCTGATCAACTGACTTGAACCAAGTGCGCGCGAGTTTGCCTGTGAATCCATAGTCACCAAACAGGGCATCAGCAACACCTTGGCCTTCACTTCCCGGAAGCCAAGCAGCCACAAGGGCGTCTATGTTTGCAAGATACGGTTCAATCACAACTGGACGCCCAGAGATGACAACTACCACACATTTCACAACCCCACAGACATTGGAAATGATGCTTGGACCAGGTTCAGCAATTGTAAGTTTTGCACTATCGCCAAACATCTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234224" ref_strand="+" ref_description="SGN-E234224 [cLEL-8-M8](-)">
      <seq>ggcaccaggtgcaaagcttaccattgctgaacctggtccaagcatcatctacagtgtctgtggggttgtgaaatgtgtggtagttgtggtctctgggcgtccagttgtgattgaaccgtatcttgcaaacatagacgcccttgtggctgcttggcttccgggaagtgaaggccaaggtgttgctgatgtcctgtttggtgactatggattcacaggcaaactcgcccgcacttggtttaagtcagttgatcagcttcccatgaatgttggtgatcgacattatgatcctttgtttccttttggatttggtctcactactaagcctgtgaagagctaaaatctcttcatctggagttctacttgctgctcaatctttatatatttttttgtttaatggatatttaatatcataatataagagtttncnagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18200" stop="19226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18493" g_stop="18939" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E234224" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18493" e_stop="18939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATA-GTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAGCAGCATTAGTTC</genome_strand>
        <mrna_strand>GGCACCAGGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTACAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTNCNAGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366064" ref_strand="+" ref_description="SGN-E366064 [cLPT-15-F17]">
      <seq>aactcttatattatgttattaaatatccatcaaacaaaaaaatatataaagattgagcagcaagtagaactccagatgaagagattttagctcttcacaggcttagtagtgagaccaaatccaaaaggaaacaaaggatcataatgtggatcaccaacattcatgggaagctgatcaactgacttaaaccaagtgcgcgcgagtttgcctgtgaatccatagtcaccaaacaggacatcagcaacaccttggccttcacttcccggaagccaagcagccacaagggcgtctatgtttgcaagatacggttcaatcacaactggacgcccagagacgacaactaccacacatttcacaaccccacagacattggagatgatgcttggaccaggttcagcaatggtaagctttgcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19214" stop="18198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18914" g_stop="18498" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E366064" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18914" e_stop="18498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTATATTATGATATTAAATATCCATTAAACAAAAAAATATATAAAGATTGAGCAGCAAGTAGAACTCCAGATGAAGAGATTTTAGCTCTTCACAGGCTTAGTAGTGAGACCAAATCCAAAAGGAAACAAAGGATCATAATGTCGATCACCAACATTCATGGGAAGCTGATCAACTGACTTAAACCAAGTGCGGGCGAGTTTGCCTGTGAATCCATAGTCACCAAACAGGACATCAGCAACACCTTGGCCTTCACTTCCCGGAAGCCAAGCAGCCACAAGGGCGTCTATGTTTGCAAGATACGGTTCAATCACAACTGGACGCCCAGAGACCACAACTACCACACATTTCACAACCCCACAGACACTGGAGATGATGCTTGGACCAGGTTCAGCAATGGTAAGCTTTGCACTA</genome_strand>
        <mrna_strand>AACTCTTATATTATGTTATTAAATATCCATCAAACAAAAAAATATATAAAGATTGAGCAGCAAGTAGAACTCCAGATGAAGAGATTTTAGCTCTTCACAGGCTTAGTAGTGAGACCAAATCCAAAAGGAAACAAAGGATCATAATGTGGATCACCAACATTCATGGGAAGCTGATCAACTGACTTAAACCAAGTGCGCGCGAGTTTGCCTGTGAATCCATAGTCACCAAACAGGACATCAGCAACACCTTGGCCTTCACTTCCCGGAAGCCAAGCAGCCACAAGGGCGTCTATGTTTGCAAGATACGGTTCAATCACAACTGGACGCCCAGAGACGACAACTACCACACATTTCACAACCCCACAGACATTGGAGATGATGCTTGGACCAGGTTCAGCAATGGTAAGCTTTGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705614" ref_strand="+" ref_description="SGN-E705614 [FA27CF06]">
      <seq>cttccccttccaaagaaagcgccaaaaatacttgtagctggaactcatgcagacaatttgggttaccaatgcggaggctggacaatagaatggcagggtgtcgcaggcaatgatttaacagttggaaccactattttaagtgctatcaagaaaactgtggatccttatacacaagtagtgtaccagcagaatcctgatgcaaactttgtggagtcaaacaaattcgactacgccatcgttgtagtaggtgaagtcccatatgcagagatgatgggcgacagctcaaatcttacaataacagaacctggtcctagcactattaacaatgtctgtggggctgtgaaatgtgttgtagtagtcgtctctggtcgtccagtcgtgctagagccttatgttgaaaagatagatggacttgtcgctgcttggcttccggggactgaaggccaaggtgttgcagatgttttatttggtgactatggtttcactggcaaacttgctaggacttggttcaagtcagtggaccagcttcctatgaatgtcggcgatcgcaactacaatcccctctttccctttggatttggtctcactactcaggcagtaaaattgaattgaaagacagcagtgatactgtagtgtgtatgacattcagtttttggatagagtttcatcatgttaagagctggtttcagaatactagtcaacagaagatgaggtacaaaaggaactatgaaatcttttgcagaagttagttatggggcaagcagttctttaggaacacaagggagtagacacctacttgaaaagctagagtgttattattcattactgaaacttgaaaaaagagcagaaagtagaaaattgtattaagagcttccccttcaattattggtattaaatgctataaatttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28473" stop="30098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28773" g_stop="28896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28897" i_stop="29010" i_length="114">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29011" g_stop="29798" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="912" r_length="788" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E705614" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28773" e_stop="28896"/>
          <exon e_start="29011" e_stop="29798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCTTCCAAAGAAAGCGCCAAAAATACTTGTAGCTGGAACTCATGCAGACAATTTGGGTTACCAATGCGGAGGCTGGACAATAGAATGGCAGGGTGTCGCAGGCAATGATTTAACAGTTGGTATGTCTTCTCATGTTCTATAGCTTCCACTTTACCACAAGTGACTCTTTTGGTAAGGGCTTAAAACTCTTGTATCATCATTGAGAGAAATTGATGGAATTTTATATACGACAGGAACCACTATTTTAAGTGCTATCAAGAAAACTGTGGATCCTTATACACAAGTAGTGTACCAGCAGAATCCTGATGCAAACTTTGTGGAGTCAAACAAATTCGACTACGCCATCGTTGTAGTAGGTGAAGTCCCATATGCAGAGATGATGGGCGACAGCTCAAATCTTACAATAACAGAACCTGGTCCTAGCACTATTAACAATGTCTGTGGGGCTGTGAAATGTGTTGTAGTAGTCGTCTCTGGTCGTCCAGTCGTGCTAGAGCCTTATGTTGAAAAGATAGATGGACTTGTCGCTGCTTGGCTTCCGGGGACTGAAGGCCAAGGTGTTGCAGATGTTTTATTTGGTGACTATGGTTTCACTGGCAAACTTGCTAGGACTTGGTTCAAGTCAGTGGACCAGCTTCCTATGAATGTCGGCGATCGCAACTACAATCCCCTCTTTCCCTTTGGATTTGGTCTCACTACTCAGGCAGTAAAATTGAATTGAAAGACAGCAGTGATACTGTAGTGTGTATGACATTCAGTTTTTGGATAGAGTTTCATCATGTTAAGAGCTGGTTTCAGAATACTAGTCAACAGAAGATGAGGTACAAAAGGAACTATGAAATCTTTTGCAGAAGTTAGTTATGGGGCAAGCAGTTCTTTAGGAACACAAGGGAGTAGACACCTACTTGAAAAGCTAGAGTGTTATTATTCATTACTGAAACTTGAAGAAAGAGCAGAAGGTAGAAAATTGTATTAAGAGCTTCCCTTTCAATTATTGGTATTAAATGCTATAAATTTATGA</genome_strand>
        <mrna_strand>CTTCCCCTTCCAAAGAAAGCGCCAAAAATACTTGTAGCTGGAACTCATGCAGACAATTTGGGTTACCAATGCGGAGGCTGGACAATAGAATGGCAGGGTGTCGCAGGCAATGATTTAACAGTTG..................................................................................................................GAACCACTATTTTAAGTGCTATCAAGAAAACTGTGGATCCTTATACACAAGTAGTGTACCAGCAGAATCCTGATGCAAACTTTGTGGAGTCAAACAAATTCGACTACGCCATCGTTGTAGTAGGTGAAGTCCCATATGCAGAGATGATGGGCGACAGCTCAAATCTTACAATAACAGAACCTGGTCCTAGCACTATTAACAATGTCTGTGGGGCTGTGAAATGTGTTGTAGTAGTCGTCTCTGGTCGTCCAGTCGTGCTAGAGCCTTATGTTGAAAAGATAGATGGACTTGTCGCTGCTTGGCTTCCGGGGACTGAAGGCCAAGGTGTTGCAGATGTTTTATTTGGTGACTATGGTTTCACTGGCAAACTTGCTAGGACTTGGTTCAAGTCAGTGGACCAGCTTCCTATGAATGTCGGCGATCGCAACTACAATCCCCTCTTTCCCTTTGGATTTGGTCTCACTACTCAGGCAGTAAAATTGAATTGAAAGACAGCAGTGATACTGTAGTGTGTATGACATTCAGTTTTTGGATAGAGTTTCATCATGTTAAGAGCTGGTTTCAGAATACTAGTCAACAGAAGATGAGGTACAAAAGGAACTATGAAATCTTTTGCAGAAGTTAGTTATGGGGCAAGCAGTTCTTTAGGAACACAAGGGAGTAGACACCTACTTGAAAAGCTAGAGTGTTATTATTCATTACTGAAACTTGAAAAAAGAGCAGAAAGTAGAAAATTGTATTAAGAGCTTCCCCTTCAATTATTGGTATTAAATGCTATAAATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696639" ref_strand="+" ref_description="SGN-E696639 [LH_Ea09K13](-)">
      <seq>gatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaagtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggttactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgattgagtggcacaagaggtgtggggagttggtgaaagaagcttttttgctactgcgctgcttgttattgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtttacttcatacagctgcacttatgtaatatatctatatctatatatatatatatgaacagagatagctttgataggtcatctgtttcatagtattcaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36629" stop="29608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36329" g_stop="36151" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36057" g_stop="35844" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="390" r_length="211" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35843" i_stop="29977" i_length="5867">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29976" g_stop="29909" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="457" r_length="67" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="476"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E696639" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36329" e_stop="36151"/>
          <exon e_start="36057" e_stop="35844"/>
          <exon e_start="29976" e_stop="29909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTAT-TAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGAGTTGAATTATGATTTTACCCTCCAATAAATTAAAATGTTTTAATAAGTCGAATGAAAATTGTAATGACTTTTGAATTATCTCAGATTAATTAGATATATATATAACATCTAATTTGTTAAATATTAAGTAAATCATATCATATTGTTATAATTATATCTAATGAATTAAACATTAAATAATAATAATAGTGTTAAGTGTATTTTCTCTTTATAAACTAAAAAAATTAATTAATATAAGTTTGGCACACCATTAACATTTATACCCAAAAACTTTTCTCATTATTATCATTTCATTAAAATCTAATTAACGGCTCTTTGCTTCAACTTCATTCTATTTATTTGTTTTTTGAAAAAAATTACTAATTGTGCAATTCTAATTATATTCGAAATTAGTTTAGAAAATCTATATATAACTATGTAGTTGGGAAATGAAAATGGTGATTTCACACCTCCAAAACTCAGCATCTATATATGTTTTTCTTTTCTTTTGTAGATATTTTAGACGTTTATGTGTATTTAATAAAATCTTAATTTCGAAATGATTTTTCTACTCAAAATGATTAAAGTATGATTTATGAGTCTTAAATAAGGGAAGATGAGAAGATTTTGGAACTGAATTACTTCTTTCACTGTATACAATAATTATCTTAAATAAGGAGAGAAAGAAATTCGATTTAATTGGATAGAGTAAACAACTTTAATGACTCAAAGAAAAAAAGATATAGAATAAAACTGGAAAGGAAGCTTAGTATTGAATAAATAATAAAAGACTCCTATGGTAAATCCCCCATGCCCCCCTCATTTTTATTCACAAATTCAATGAGATCTCTTTGTATCATTTTGTCAACCGTTACTAGAAGTACATATACCATTATCAGTATAAATTATATCTAATTTGCTATTTATTTCTGTCCTTTCCAGCTTTCTACTTGATCACTCAACTTTTAATCTAACTATATACGGTGGTCTCTGAGTTCATTCCAATTACACTGTGATAGTTTTTAAATCTTTTTCAATTTTCAAAGAATTTTATATCACATGTTGAAATTAAATTAAATCAATTACCAATAATGATGATGATATTATAGTTTTCTTTCTATTTAATTCCACGAGTTGATGAAAATATTTGGTAAGTTTTTATCTAATAGATTCATTGTTACTTTATCGTTCGTAGACGTTTATTTGCATACTAGCAATTCTCAGAGACTTCCTGAGGTTTATTTTTGTTTCCACCTAGGATTCCCAAGAAATTCTTCGATTTCTTCCGGAAACAGATGATTAATCATCTTCTTCTCACGTTCCGTGAATAGCCCCTCTCCAAGTAGTCAGTCTGTTCTCTCGTGGAGAAAGCCTTACTCTCGTTTCGTTCGAACGTAGCCTGCAGGAGTCAAGGGGTTGTAGGGGCGACTTCCAGAGATAATTATAACGAGGGGAGATGAAGAGCATTCTTCCTTCGCGAATACCGACTTCACCAACCCCCAACCCGGCTAAATGGTTTGCCTCATTAGTAGATCCACTAGAAAAATCTTCAGTTTTCCTCTTTCTAACCATCATTTCACCACCTTTCAAGCTTTGCAAATCAATTTCACATCTTGCTACTTCCACATCCTTCTCTTGTATGGTCATTGTTTTATCATCATTTTCAGTAGATTTCTTTTCTTCATTCTGATTATTCATATAAGGAATTTGATCATTTGAAACTTTGCGATGATTATATTCATCACCTTCAAAAAGTGGATCAAGATCATAAAAGATATCATCGTTCATATCGATCACTTTAAATTGGTTTTGATAGATTGAACATCAAGATCTGAGAAGAATATAAAGAAAAAAAAAGAGTAAGAAAAAAAAAGAACTTTTTTTCGATACAATCTAAGTAAATGAAAATTTTGTTTGATATATAAGTTAAATATATTGAATAGAGATGAGATTGAAAAGAAAAGGAGAGAAAAGATTTTGGGATTAACTATAAAAGTAAAAGAGTTGTTTGTAGAGTTTCTGAATAAAAGTAGACTTAAAAGAAATAAAATTCGATAAGCGAAGTTGGTGATGAAAGTAATATTTTTTTATGGAGTGAGAGAAACAAATAAAAACAAAAAAAGCGAGATTTTGTTTTATATAATCTAAAATTATATACAAAAAAAAAGAGTTAGAAAAGAGAAAACTTTTTCTAATACAATTTGAGTAAATGAAAAAGTTGTTTGATATATAAATGTGTTGAATAGAGATGAGATTGAGAAGAAAAGAAGAGAAAAGATTTCGAGACTAATTATAAAAATAAATGAGTTGTTTGTAGAGTTTCTAAATAATAGTAGACTGAAAAGAAAAAAAATTTGATACGAACGAAGTTGGTGATGAAAGTAATATTTTATATATGGAGCGAGAGCAACAATAAAAACAAAAAAAATGAGATTTTTTTTTACATTAATCTAAAAATGTGATAGAATTATTTTCGTGGTTATATATCAACTAATATTGCGCGTGTACCACTTTCTAGTGGGCATAAATATTTTTAAAAATTGCATCAATATATAATAAATATATTCACAAATCATTGACATCCAATATCTAAAGTGTAATCTTGAAGATTCTTAAGTAGTACTAAATTGATTTTAATTATAGTTTATGAGTTAAAATTTGATATGAATTTGTCAAATTTTAATAGTTTTTATATAGATATTATGTTTTCATTAAAAAAAATTAAGTTAATTAAATTCATAGAGTACAAACTTAATACAGTCATATCATCAATTAAACCCTTGTCCTACCACCACAATCAATATTACATTTCTAAACAAACTTCATTTGATATAACTCATCGCAATTATAATATATTTTTGTTAGAAAAGGAATTCAACATTTCTTTTATATTTTGTAAAATTGTATTGTTAAAATTGTACTTGAAATATAAAAAAATGATAAAATAATATTATGACATTTGAGTGATGAGTAATATAAATAAAGCAAAGAAAGTTAATATAATTTCATGAGTAAAATAACCAAAATATGATATTGTATTCATTTCTTTTTTTCTTAACATGGCTTGTTATCCTCCCTTCTTTCTTTTGGATGAAAACTCCATTAAAAAATTAAATTCAAGCAAAGAAAGTGAAATTGCATAGCCAATGAATATCACATCACTAACATGCCAAAGCTCATAAATACATTTTTTACTTTTATTGGGTTATGATGATTGTTATCAAAATTCAATACTTAATTAGTTTTATACACAAATAACTCACATGAATTTGCATATGAAAATTCAATAAATTTGACCTACTTTTAATAAAATATAATAATAATAACAGTAAAAAAAAAATACAGACAAAGAATTGTGCTAACAAAAAAATCATGTCAGAACGAAATGTCACTTACCCCGTTTGTATTGGTACAACTCAAAGTACAGTTCTATGTGATCGACACTGAAGCATCTCATCAATTGATTTTCCCTATAACAAAAAAAGTCATCTCATAAGCTATCGACACAAAATTACAAAAAAAAAAATTTCATCAGATATTAAACTCTTAAACATCAGTCAAACATCATAAACTATATTATAAGTAAGAAGTAAGAAACAAAACAAAAAAATAACTTAAAATAACATGCACAATGCAACATTCAAAAGAAAAATGTTTCAATGCTCTCTATCAAACTCATAAAAATAAAACACAAAATAAAACATAAAAAGCAACAAGAAATACATATATAAAATGAAAAGATAAGGATCACAGTGAGGAATGTAAAGAGACATCAGTTTCTTTAGAAGATTATTAATGAATAATTATCTTTTTAATAATATTTATTTCATGTAAAAATATATATTTTAAGTACAATATGATATGATTATTATTTAGTATTTTGTTAATTAAATATTTTTATTTAATATAAGGGTAAAATGGTAATTCAATATTGTACTTTGATGCTTTCCACTTATAATAATATATGATGATTGCCATTTTTTATGCATTTATTTATTGTACCATATAAATTTTGGTTTATATTGTTTTCTTTTTTCTACCATTAATATCTCACAAATGATTGTATTGTATTTCATAATTCAATTATATGTATACAAAAATTTCTTTGTCAAAATATCCAGATGGCAGAATTAATAACTTAGAATGAGCCAAAGAAGACGAATGGTACATATACATGTAATTATTATTTATAAATGTCAATTAAATATTTACACAATGACCATTTTTTATAAATACTTTTATTTTGTAGGTGTAGACTTGAAATTGATAGTGATCTACTAGTCATCCTAAGAAAGACATATGTTGATCGAATTTCTCTATAACAATTATAAAATACTACTCTCCTTTGACGACAAGTTCTCGATATGTATGCATCTGTAAAAAAAAGTGGAGGGTATTATTCCTTAAAAAGAAGGCGGAAACTTTCGCATTAAATATTTTTTAACTTTAATGTCGAATTTAAATAATGTGTTCTAATATATTAAAAAAGAGTTTTTAACAAGTTGAATACTTGGTATATTATAAGAATTGTATGATTGAAGTCGCTATATTATTAGTTTACAAATTCAATTGATAACAATATTTTTGTATGATGTGTCTTGATCATAATATTAGTTGAAATATGCTCACTGTTCATTGATTCGAGCTTGTATTATACACATCATACACTTAAAATTTTTAAAGTATTTATACTAATTAGCACGGTATACACGTGCAATGCATGTGTTCGAGAACTAGTATATTACTAAAAGCATGAACAAAAAAGTTGAAAGTTGAATTACGATTTTATCCCTTCTATAAATTAAATTGTTATAAAATATTTAAATATCTGATTGTATAAATTTAATTAAATGTTAATGACTTTTAGACTTTCAAAGATTAATTTCTAATTAAGTATCTAATCTATTAATATTTATCAGCTATAATCTATATGTATATAATAAATATAATTTTTTAAAGAAAAAATCTTTACCTAAATTTCTTTACTTTTCCTCTTCTAATTAATTTTTCCTTAACCCTCTCATGAATAATATGATTGACGTGGATAAAGTATTATCCTTTATGATAAATAACGAAATTTAATAATTTAAAGGGTGCAAATTTACAAAATGGAGACGCACATTGATAATGTCTTCTTGATTATTATTAAAGAATGACTCTAGCTTCACAAATTTAAATTCATTAATGTTTAATTACATAATAAGAACTTTAGTTGTTCTTTCTACATAATGTGCTAACTTTAATTTCTTTTTCATATTCTTCATTTATTTATTATTATTTTCTAATTACTTATTTAATTTTTATACTCTTTATATTCATAACTCTCATCTTTTCATATTCAGAACCTCCAAATATTTAAACTAAAACTTTAAGATATCTTTTGATATTCCTATTTTATTTATATAAATTCAACTTCTTTACGTCATGAAACCCCTACTAAGATTATTAGGCTATTATTTTTATTTTAAAGTAAAAGTAGATGATGAAGACTCTTGAATTTCGATACGATATGAAAGGAGTCGATAAGAACTCAGAAAGTTATGTACTAATTTTGTACTTATTTTTTTCACCCATATATACATCAATCTTATAAGAATAATGTCTATATTGTATATTTTTCTTAAATATTCTGTTTCTTTTTGTCTTTTTTTCTCTCTGTTAGACTTCTTAATTTAGTTTTCTATGAATGTTTTATTGCCGTAAGTCTTTATTCTTATTTTTTAATTGTTACATTTTATTATTCATTACAATTTACATATATATTTCCATGAGATTTTAGTCATTCTAACATATCTATAAAAATTCACATGAAACACACGTGCGAAGCACGTCCTCAAACTAGTATATATATATATATATATGAACAGAGATAGCTTTGGTTGTTCATCTGTTTCATAGTATTCAAAA</genome_strand>
        <mrna_strand>GATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAAGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTTACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGATTGAG.............................................................................................TGGCAC-A-AGAGGTGTGGGGAGTTGGTGAAAGAAGCTTTTTTGCTACTGCGCTGCTTGTTATTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATG--TGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTTTACTTCATACAGCTGCACTTATGTAATATATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TATCTATATATATATATATGAACAGAGATAGCTTTGATAGGTCATCTGTTTCATAGTATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736998" ref_strand="+" ref_description="SGN-E736998 [LC08AD12]">
      <seq>cgatagaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37139" stop="35495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36840" g_stop="36810" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36597" g_stop="36423" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="205" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36340" g_stop="36151" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36057" g_stop="35795" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="659" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E736998" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36840" e_stop="36810"/>
          <exon e_start="36597" e_stop="36423"/>
          <exon e_start="36340" e_stop="36151"/>
          <exon e_start="36057" e_stop="35795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>CGAT-AGAACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740743" ref_strand="+" ref_description="SGN-E740743 [LC22CG09]">
      <seq>cgatagaagtatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37139" stop="35495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36840" g_stop="36810" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36597" g_stop="36423" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="205" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36340" g_stop="36151" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36057" g_stop="35795" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="659" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E740743" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36840" e_stop="36810"/>
          <exon e_start="36597" e_stop="36423"/>
          <exon e_start="36340" e_stop="36151"/>
          <exon e_start="36057" e_stop="35795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>CGAT-AGAAGTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740633" ref_strand="+" ref_description="SGN-E740633 [LC22BB08]">
      <seq>gatagaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37139" stop="35495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36839" g_stop="36810" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36597" g_stop="36423" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="204" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36340" g_stop="36151" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="394" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36057" g_stop="35795" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="658" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E740633" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36839" e_stop="36810"/>
          <exon e_start="36597" e_stop="36423"/>
          <exon e_start="36340" e_stop="36151"/>
          <exon e_start="36057" e_stop="35795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>GAT-AGAACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740420" ref_strand="+" ref_description="SGN-E740420 [LC21BD07]">
      <seq>cgatgaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37136" stop="35495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36837" g_stop="36810" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36597" g_stop="36423" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="204" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36340" g_stop="36151" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="394" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36057" g_stop="35795" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="658" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E740420" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36837" e_stop="36810"/>
          <exon e_start="36597" e_stop="36423"/>
          <exon e_start="36340" e_stop="36151"/>
          <exon e_start="36057" e_stop="35795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGA-GAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>CGATGAACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737976" ref_strand="+" ref_description="SGN-E737976 [LC11DF03]">
      <seq>gggctgcaggaattcggcacgagggagagaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37146" stop="35495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36833" g_stop="36810" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="53" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36597" g_stop="36423" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="228" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36340" g_stop="36151" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="418" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36057" g_stop="35795" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="682" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E737976" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36833" e_stop="36810"/>
          <exon e_start="36597" e_stop="36423"/>
          <exon e_start="36340" e_stop="36151"/>
          <exon e_start="36057" e_stop="35795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>AACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235945" ref_strand="+" ref_description="SGN-E235945 [cLED-16-A17]">
      <seq>gatggtgaggaagatgacaatgatcctgatgatgatgagccgcgcgctgatgcagagggaagagttgagaaatatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagccaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatatagttagcaaggtcactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37202" stop="35911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36902" g_stop="36810" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36597" g_stop="36423" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="268" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36340" g_stop="36211" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E235945" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36902" e_stop="36810"/>
          <exon e_start="36597" e_stop="36423"/>
          <exon e_start="36340" e_stop="36211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGT</genome_strand>
        <mrna_strand>GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGCGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGCCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATATAGTTAGCAAGGTCACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264575" ref_strand="+" ref_description="SGN-E264575 [cLEG-67-F6]">
      <seq>actccaaagaaggcaagctgaactggatgctggggatgagaaaatcaaggaacttatatctgttttggatatgaggaaggatgaatcaattgagcgcacgttcaagggtgtggctaaacatttccgtgaagtattctctcagcttgtacaaggaggtcacgggttcttagttatgatgaagaaaaaggatggtgaggaagatgacaatgatcctgatgatgatgagccgcgtgctgatgcagagggaagagttgagaaatatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctggcccattttatctttttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39509" stop="36166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39209" g_stop="39170" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39169" i_stop="39069" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39068" g_stop="38922" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="187" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38921" i_stop="36903" i_length="2019">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36902" g_stop="36810" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="280" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36597" g_stop="36466" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="412" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E264575" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39209" e_stop="39170"/>
          <exon e_start="39068" e_stop="38922"/>
          <exon e_start="36902" e_stop="36810"/>
          <exon e_start="36597" e_stop="36466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAGGTATATAAAGCATGTATTTTGTGGATTTGAACTTGTGATGTTTATCTTTTGATACCAGTTGAGTTTGGCTCCCTTCATTTGTCTTGCATCAATCTTGGCAGAAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAGGTTTGTTTTGTTTGTCACATAGCACATTATGTGTCTTTCTGTTGGGCTACCTCTTGCTCATTTTCGTACTTCCTCTAGTTCTGTTCGAAGTTCTCATTATGGTGCACTTGCAATAAACAGATCCTGTGATGTTAGAATATGAATAGGTTTGTACAATCCTATTAGAATAGGAATAGGTTTATATATTCCTATTTAGAATAGAATAGGAATAGAAATAAAAATAGGAATAGTAAATAGTATCCTACTTGGTAAAGGATTGTATTCTGGTGTCTATAAATAGTGTTTCCATGTTATAATGTATACAATAACAATTCAATAATATTCTTTTCCTATATTTGTCACAGGGTATATGAGAAGTCTCATGGAAATTAAACCATAATTTATACAAATGAGTTATTATATAAGTCATGTAGATATGTTCAAACAAAGTGCAAATATAGACTTTAAGAGATATAAATTTTGGAAATAAAAATGTCTTAATGAGAGTAATCAATATGGTTACATATGGCCAAGTACCTCTCCACAGTGGAAGGTAAGAAACAGAAACTCAACAGATGGTGCTCAACAAATTATTTGAAGAGGAAATACTTGAAAAACAATAAACTTATAGAATTGGCAATATAAGAAAGTGAAAGCATATCGATTACTGAACTTTCTGAATGCTTAGCTGGCTTAGAGAATCAAAATATCTCACTCATGGAGTATTCATTAGATTACATACAGCTAGAACTTAAACTTCAAAGGAAGAATTCAATAAATTCTCCAATGAAAAATGGAGAGATTAAGAGCCTAATAAATGGAGTAGCACTTAAACACAGCGACAGACATAACTGTATAGCATATTAGTTATACGAGTGGTCCTCTGAGCATAAAAAAAAGTTGCATGAGTGGTATCCGGATTGTTAACCTTCTTGTTGTAATTTCTAAGTATTAATGCCAGTGCCAGATAATATACAGTTATTCACTTAGGGATTACATACCTGTGGCTAGCTTTTTTTTAACTTAGTAACTTGGTATTATATCACAACCAGTACATGGGTTGTACTGTAACCTTGTATACATATGTACTGCAAATTTTACTGCCCTGAACCTAAATTGAGTCTAGATCATCAACTATAGAGGCAGTTTCATTTGAGTATATCTTGTTACTCCAAAAACATAACACAACGGAGTTTAGTTTAACCTTGCTCACTATTCTCTATGCTCTCAAAACACCTAGAACTCCTCTATTTCCAAGTTGACCACCATATAGCAGCAGGGATAGTTCTCCATCTCTCTGTTTTTAGCATGTACTGCTGCTTACTCTAGCTCTTCAGAGCCTCTGAGACTTTCCTGGGCATGTCCAGGAGATGTCTTGGAGACTTAGAAATATTCTCTGTAGCTAAAGGGTGTAAGTGCAGTGTAGAAACAGATGGTTCACTGTCTCATATGTTTCCTCACAAAGAAAATATCTCGAGCATAAGGTTATCCCTTTCTTCATCACATTGTCCTGAGTCAAAGCTGCTTCTTAGGCCAATAACCAGATGAAAACAGGATATTTTGTAAGGCATACTATTTTTTCCAAATTTGCTTTCATGGCCAGTTTAGATTATGATTGCTAGGTCGGCTAATATATTCCTTATTTGCAATATGACTTCCTAGGGCTAATGGTATTTCTTTGGTTCTCGCTTTCTAATTTCTCCTTAAAATCATTAGATTCCACCATTATAACATGGGTGATGGAATAATTGTTGCCGCCTCTTCATTTCCTGTCAAGAAAACACAATTGATGGTCCCAGAAACATCTGTGTATTATTACCTCTGTAGGTGTCCTTTAATTGTGTATTGCATGTAACATTGTCAACAAGCATTACTAAGCTGATGCATACTTGGCTAGTTATCATCATCAGAATTTGCCTGTATAAAATGGTAGTTTTCACATTTATTTTGTATGGATGAACTTCTGGAAGTACATGGGTCTGTGTAAGCTGGCTTTCTTAAGTGATGAGGATCACTAGAGTCTTGTGTTGTTGCTTCTAGGATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAG</genome_strand>
        <mrna_strand>ACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG.....................................................................................................AAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGGCCCATTTTATCTTTTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341692" ref_strand="+" ref_description="SGN-E341692 [cTOF-9-M17]">
      <seq>tcagagctagtatagctatgaaacaagatgaaatgggaacagaacttgttgatcatttaacgccggaagagcgagattctttgtcacgtttgaaccctgaaatcacggccctgaaggagcagctgattgcttgcagggcaaatcggatagagactgaaactagaaaagaggagcttgagatgaatctgtcaacaaatcttgaaagacgaaagcaagagttaatggcgatgaattcttctgtcgacgttgatatgctacaggctgaagttgagagcaagtatcaggaactcaaggatgcggactcactagttgatcatgtcaccaaagagcttacaagggtttctcgaaatatagatgaacgaaacaagaggctcaagcagatcaaacaggaaaaggataacctgaaggctcttgaagataagtatcagaatacacttcaggatgaagcaagagaactggaacagatgctaagtaaacggaacacctatcttgcaaagcaagaagattactctaagaaaattcgggaactgggtcctttatcttctgatgcctttgagacgtacaaaagaaagaacgtaaaagaattatataagatgctgcacaagtgtaacgagcagctgcaacagttcagccatgtaaataaaaaggcacttgatcaatatgtaaactttactgagcaaagagaagaaactccaagaaggcaagctgaactggatgctggggatgagaaaatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41700" stop="38860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41400" g_stop="41249" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41248" i_stop="41167" i_length="82">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41166" g_stop="40983" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="336" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40982" i_stop="40904" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40903" g_stop="40833" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="407" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40832" i_stop="40759" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40758" g_stop="40607" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="559" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40606" i_stop="39339" i_length="1268">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39338" g_stop="39170" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="728" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39169" i_stop="39069" i_length="101">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39068" g_stop="39059" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="738" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E341692" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41400" e_stop="41249"/>
          <exon e_start="41166" e_stop="40983"/>
          <exon e_start="40903" e_stop="40833"/>
          <exon e_start="40758" e_stop="40607"/>
          <exon e_start="39338" e_stop="39170"/>
          <exon e_start="39068" e_stop="39059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAGGTTTGTCGGTGTCAATATTACTTAAGTCAGTATATGACATGTTGATACAAATTAGTCTCTCGTTTTCGATTGGCTTTTGTAGACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAAGTGAGTTCATTATTTGTTTTTGAAGCTTTTGATATCGTATACACTCAACATTTCTAATACAATAAGATGGCCTGCCCAGGGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAGGCAAATATTCTCTATTCTATTTCAAGTTCACATGGCCTGTTTTGTTTTGGGCTAATACATAACAACTTTTACAGGCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGACGTATTGCTCTTCCCTAAATATGCATATATCCTTTCCGGCATTTGAATATGGAGAACTTTTTTTTGCCGTCATTTCTTTCATAGTTTATCTTGATAGATTTTCTTGTGTTAGAAGTCACAAGCATTCGGATATAAATCCAACCGCGAGCGACTGTGATGATCATAAATTCTGTTTAAATGGTGAAATTGTAAGGTGAAGAGGATTCTTGACAGTATTCCCCTTAGGTATTCAACAAAATCTAATCAATAAAGGAACAGTGATACATAGTAATATTTTCTAGAAAATGAGGTTGGAGCATAGGTTGTTCCATATGTTTGGTTTGTTTGGTGAACATCCATAGGATGTTAGAAACTTTAGAATAAGAACTAATGACTGAATTGCCTATTTAAGTATCTTATTCTGCATGTAGAAGAACCTTTAAGACCAATAACTTAATTTTTAGGTCTGGTCTCGGGAGTGCTTCGGATCATTGTTCATCAAAACATTGTAAACTGTCATATGAGTACAGTTTGAACTTGTTCAAGTATTTGCATGTAGTTTGAAATGATGCTTTAATTATTCACGTCCTAGAAGTGAACTCTCTCGTATTCTTCCAGCAGAATGTTGAAATTCTAGTATAGACATATTTCTGATACATCTGAGTAGCTAAATAATTGATGAAAATAGGGAATTGTGTGAAATTGATGGTTGTTGAAAGTGAGGCGAGTTTGGCGTCTGTATTACTGAGGAAAATGTCTAGATCGCTGAAAAGCATTTGTGTCCATCTCTTTCCGTTGTAGTTTGATCTTGTTCATACTTGTGTGTTGCTGCTTTTTGTCACTCGAGAGTAAGACAGTAAGTTATCATCTTTTATATGCTTCTTATAATTGCATTTGTTTTTAGTCCTTTTAAATGTCTTCTTAATGACAGGAATAGCTTCTAGACCTGTTTCCTTGTTGCCTTCTACCCCTTCTAAAAAGTCTAGGAAAGTAAATGTGGAGATACTCCAAAGCATGCCTTATAGTATAAACCTGTGTTCAAGTGTTCAGTTGTTAAAATATGTGCACATTATAAAGCCTTTTGACCTCTAAAATTTTATTTTAGACTAGGAATAGTTTTCTTTTTTTAAAAATAGGAGGTGATATGTGTACATCCAATATTACCTTTAGACAGGTTCATTGGCTTTTGTTCTTCTGACATAATGGTTGGAACTGCTTGATTGCTAGTTGACTACAAATATAATGAGGGTGTTTGTAAATGTAAAATTAATGCCATTATTTAAATTCTAGGTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAGGTATATAAAGCATGTATTTTGTGGATTTGAACTTGTGATGTTTATCTTTTGATACCAGTTGAGTTTGGCTCCCTTCATTTGTCTTGCATCAATCTTGGCAGAAAATCAAGG</genome_strand>
        <mrna_strand>TCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAG..................................................................................ACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAA...............................................................................GGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAG..........................................................................GCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAAACTCCAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG.....................................................................................................AAAATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275139" ref_strand="+" ref_description="SGN-E275139 [cLEN-9-J11]">
      <seq>aatgaactcgtggctgagcagcacaaaaatgatgctggcctgggtcacgacaagtctgagttagaacagcttaaacaagacattcttaatgctgaaagacagacacagtccatcttaaaagctcttcaaaagaaggagaaactgcttggtaatattctgagtcaaatagatcagctcacagctagtatagctatgaaacaagatgaaatgggaacagaacttgttgatcatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41954" stop="41040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41654" g_stop="41520" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41519" i_stop="41441" i_length="79">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41440" g_stop="41340" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="236" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E275139" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41654" e_stop="41520"/>
          <exon e_start="41440" e_stop="41340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACTTGTGGCTGAGCAGCAGAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGAAACAATCCATCTTAAAAGCTCTTCAAAAGAAGGTGCGTTCTGTTGAAAATCTTTTGAATTTCTTGCTTCTACTGTGTTTCTTCTACAATTAGAGACTGTTGATATGTGCAGGAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAAC</genome_strand>
        <mrna_strand>AATGAACTCGTGGCTGAGCAGCACAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGACACAGTCCATCTTAAAAGCTCTTCAAAAGAAG...............................................................................GAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCACAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620538" ref_strand="+" ref_description="SGN-E620538 [71240]">
      <seq>gagaagaggcactccaatattccagcacacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatttgagtgtttcctttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagtagtaacaagcttttctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59060" stop="5792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58760" g_stop="58675" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58589" g_stop="58357" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="311" r_length="225" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58356" i_stop="57527" i_length="830">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57526" g_stop="57493" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="345" r_length="34" r_score="0.529"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E620538" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58760" e_stop="58675"/>
          <exon e_start="58589" e_stop="58357"/>
          <exon e_start="57526" e_stop="57493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCTACTGGTACATTGCCATTTGCATATACTTTAGTAAAGCAGATTTTCTTTGTTCTAAAAAAAGAAACCATAAGCTGCTACACTTGTGCAACTCTTACTATATACAGGATGAGTGCGTATATGCTGAAACATTGTATAATGTATCCATTTGTTTTTTTGCGTCTTTGGGTAAAGAGGACACAACTAGGGTGAGGGGAATTTTACACATTGGTAGGTTTCTATTTTTCTTTCTATCCAAGACTTACGGTTAATGAATGTGCAAGTGAATTTTTTAAATCTATAGTTACCTTACAAGAATAATAACTTCGTTTCAGTGTGAAACAGTATATTGGGGATATAACTTGATTATGACTTTCCACTTCATTCATCTAACTCTGTCTTTATATCAATTAATGGGTGCGTCTCTGGAGTGCTGTTTTTGCTAAAAGTCGAGCAGTTTCTCGTAAACTTGCTTCAAATATGAAACTGTGTATTAATCTTATTTTAAAAAAGACGACTCAGTAACAAATCGCTTCTTCCAAAGAGCGTGCAGAAGACTTTGCAGATATGGTAAGATTACATCTATTCTACAATAAAGAGAGTAATGTGGGATAAAATAATTGTTGATTGACATTACTTTCTATCTTTTTGAACAACCAACTCTCATTCATACACATTTCTTATTTTCTCCAGGTCAATCGATTTTTTAATTTTTTATAGTTATTGATAATTTTATGTTTTTTTTTTATTAAGAATCATTACACGTGAGAAATATAAAACTAAGACA</genome_strand>
        <mrna_strand>GAGAAGAGGCACTCCAATATTCCAGCACACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAA--T----TTGAGTGTTTCCTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGTAGTAACAAGCTTTTCTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596080" ref_strand="-" ref_description="SGN-E596080 [39367]">
      <seq>ccgtagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccatttcaaattttgtttcttgtaggaatattatgtcaagacttttctgcttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="5278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60213" g_stop="60142" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="172" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="317" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="407" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58452" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="544" r_length="137" r_score="0.783"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58451" i_stop="58225" i_length="227">
            <donor d_prob="0.005" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58224" g_stop="58191" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="576" r_length="32" r_score="0.676"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E596080" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596080" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60213" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58452"/>
          <exon e_start="58224" e_stop="58191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCTACTGGTACATTGCCATTTGCATATACTTTAGTAAAGCAGATTTTCTTTGTTCTAAAAAAAGAAAC</genome_strand>
        <mrna_strand>CCGTAG-TAACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGATGTAATCTT-CGTGCCTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATG...................................................................................................................................................................................................................................TCAAG-A-CTTTTCTGCTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693899" ref_strand="+" ref_description="SGN-E693899 [LH_Ea02I09](-)">
      <seq>ggtttttgctacagagtattcgtcgccgttcagtttatcttcatttgaaaaccctcaatcatggcagagcagacggagaaggcgtttttgaagcagccaggtgtttttttaagctttaagaagactgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattccccggcaatgtttttatccgaggtggtatccttgctggtacatgccccagtgttaagatgaacaggcccatcattgtttgacgcaattccctccattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatccccatgcttccgtgtgaaagagggagatcatgttattattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggggattccacccggttttggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagggtttttattttaatgtttacatttaggaatgatgtcaaggcatatttgcttttgctgaattttagttttcattgatattcctttttgagattcaaattttgaaaaactttatgctagtagtaacaagcttttttttcctattgagatttgagcccatatatgtactggtaatcttgttgcaggtttggtgcttgacccttcttttaaaaaaatatatatttatgggggttttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63864" stop="57955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60254" g_stop="60142" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="0.924"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58255" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="786" r_length="337" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="822"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E693899" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60254" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTG--AAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCTA</genome_strand>
        <mrna_strand>GGTTTTTGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGAAAACCCTCAATCATGGCAGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTTTAAG........................................................................................................CTTTAAGAAGACTGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCCCCGGCAATGTTTTTATCCGAGGTGGTATCCTTGCTGGTACATGCCCCAGTGTTAAGATGAACAGGCCCATCATTGTTTGACGCAATTCCCTCCATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCCCCATGCTTCCGTGTGAAAGAGGGAGATCATGTTATTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGGGATTCCACCCGGTTTTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGGGTTTTTATTTTAATGTTTACATTTAGGAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTTAGTTTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAAAACTTTATGCTAGTAGTAACAAGCTTTTTTTTCCTATTGAGATTTGAGCCCATATATGTACTGGTAATCTTGTTGCAGGTTTGGTGCTTGACCCTTCTTTTAAAAAAATATATATTTATGGGGGTTTTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690059" ref_strand="+" ref_description="SGN-E690059 [LH_Ea02I09]">
      <seq>cctcgtgccgaattcggcacgagggtttttgctacagagtattcgtcgccgttcagtttatcttcatttgaaaaccctcaatcatggcagagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagactgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcaccggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttaatgtttacatctaggaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactggtaatcttgttgcaggtttggtgcttgaaccttcttttaaaaaaatatatatttatggtgattttagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63866" stop="57956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60277" g_stop="60142" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="237" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="382" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="472" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58256" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="808" r_length="336" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E690059" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60277" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTCTCCACTGCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTG--AAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCT</genome_strand>
        <mrna_strand>CCTCGTGCCGAATTCGGCACGAGGGTTTTTGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGAAAACCCTCAATCATGGCAGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACCGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTAATGTTTACATCTAGGAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGGTAATCTTGTTGCAGGTTTGGTGCTTGAACCTTCTTTTAAAAAAATATATATTTATGGTGATTTTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736907" ref_strand="+" ref_description="SGN-E736907 [LC07DA06]">
      <seq>ctatcgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60546" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60246" g_stop="60142" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="206" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="351" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="441" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58259" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="772" r_length="331" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E736907" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60246" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAG</genome_strand>
        <mrna_strand>CTATCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397014" ref_strand="+" ref_description="SGN-E397014 [TUS-44-P9]">
      <seq>tttcaccataagtactttttttgtttacataaggttcaagcaccaacacctctcacaagatgaacagtacatatatgggctcaaatctctttacgaaagaaaagcttgttactactaccataaagtttcaaaatttgaatctcaaaaaggaatatcaatgaagactaaaattcagcaaaagcaaatatgccttgacatcatttctagatgtaaacatcaaaatagaaactctcacgttcacattccggtaaaagcctttttcccatcaccactaaaaccggctggaatcaccttcaatacattgaacctcacttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57965" stop="58881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58263" g_stop="58581" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E397014" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58263" e_stop="58581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACCATAAGTACTTTTTTTTTTTAAAGAAGGTTCAAGCACCAA-ACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCACAGTTTTGG</genome_strand>
        <mrna_strand>TTTCACCATAAGTACTTTTTTTGTTTACATAAGGTTCAAGCACCAACACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCTTTACGAAAGAAAAGCTTGTTACTACTACCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAAATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACTCTCACGTTCACATTCCGGTAAAAGCCTTTTTCCCATCACCACTAAAACCGGCTGGAATCACCTTCAATACATTGAACCTCACTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713724" ref_strand="+" ref_description="SGN-E713724 [FB09BH05]">
      <seq>ccgatagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63632" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60025" g_stop="59937" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="234" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="324" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58589" g_stop="58266" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="648" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="662"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E713724" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60025" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>CCGATAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713467" ref_strand="+" ref_description="SGN-E713467 [FB08CH05]">
      <seq>cgatgggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63632" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60023" g_stop="59937" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="232" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58589" g_stop="58266" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="646" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="661"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E713467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60023" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>CGATGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284539" ref_strand="+" ref_description="SGN-E284539 [cLES-3-D9]">
      <seq>acagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59208" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58908" g_stop="58839" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="160" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58266" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="484" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="500"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E284539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58908" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>ACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317536" ref_strand="+" ref_description="SGN-E317536 [cTOB-17-E5]">
      <seq>aagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59066" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58849" g_stop="58839" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="101" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58266" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="425" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E317536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58849" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>AAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397336" ref_strand="+" ref_description="SGN-E397336 [TUS-45-D15](-)">
      <seq>cacagtggtaagatgaacagaaccatcattgtttgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttttggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttttattttgatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattttagttttcattgatattcctttttgagattcaaattttgaaactttatgatagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcattttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatgggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59209" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58909" g_stop="58839" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="161" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58269" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="482" r_length="321" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="499"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E397336" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58909" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATG</genome_strand>
        <mrna_strand>CACAGTGGTAAGATGAACAGAACCATCATTGTTTGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTTTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTTTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTTAGTTTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGATAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATTTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722465" ref_strand="+" ref_description="SGN-E722465 [FC17BD12]">
      <seq>aatcggccgaattactctccactgcaaattcgggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60576" stop="57972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60286" g_stop="60142" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="246" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="391" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="481" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58272" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="799" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E722465" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60286" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGAGTCCATTACTCTCCACTGCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTACTCTCCACTGCAAATTCGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378730" ref_strand="+" ref_description="SGN-E378730 [TUS-43-O11]">
      <seq>gtactttttttttttaaagaaggttccagcaccaaacctctcacaagatgaacagtacttatatgggctcaaatctcaataggaaagaaaagcttgttactactagcataaagtttcaaaatttgaatctcaaaaaggaatatcaatgaagactaaaattcagcaaaagcagatatgccttgacatcatttctagatgtaaacatcaaaatagaaacactcaagttcacattccggtaaaagcttttttcccaacaccaccagaaccggctggaatcaccttcaatacattgaacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57974" stop="58872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58274" g_stop="58572" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E378730" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58274" e_stop="58572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTTTTTTTTTTAAAGAAGGTTCAAGCACCAAACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCA</genome_strand>
        <mrna_strand>GTACTTTTTTTTTTTAAAGAAGGTTCCAGCACCAAACCTCTCACAAGATGAACAGTACTTATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342602" ref_strand="+" ref_description="SGN-E342602 [cTOF-7-E18]">
      <seq>ttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63825" stop="58047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60215" g_stop="60142" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="175" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="320" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="410" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58340" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="660" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E342602" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60215" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGC</genome_strand>
        <mrna_strand>TTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342950" ref_strand="+" ref_description="SGN-E342950 [cTOF-11-M22]">
      <seq>gtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59217" stop="58047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58917" g_stop="58839" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="169" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58340" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="419" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E342950" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58917" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGC</genome_strand>
        <mrna_strand>GTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416605" ref_strand="-" ref_description="SGN-E416605 [STM-23-E10]">
      <seq>agaaggcatttttgaagcacccaggtgtttttttaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatgtgaacttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagaagtaacaagcttttcttaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63649" stop="58058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60178" g_stop="60142" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="138" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="283" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="373" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58347" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="613" r_length="240" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E416605" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416605" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60178" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGA</genome_strand>
        <mrna_strand>AGAAGGCATTTTTGAAGCACCCAGGTGTTTTTTTAAG........................................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGAAGTAACAAGCTTTTC-TTAAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416533" ref_strand="+" ref_description="SGN-E416533 [STM-23-M17]">
      <seq>gccgttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatgtgaacttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagtagtaacaagcttttctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63840" stop="58057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60230" g_stop="60142" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="189" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="334" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="424" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58348" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="664" r_length="240" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E416533" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60230" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>GCCGTTCATTTCATCTTCCTTTGC-AACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGTAGTAACAAGCTTTTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433272" ref_strand="+" ref_description="SGN-E433272 [STM-58-A20]">
      <seq>ttgggtacgggccccccttgcatcctctattcggcggagcagacggagaaggcattcctcaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63806" stop="58047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60226" g_stop="60142" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.741"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="184" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="329" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="419" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58348" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="653" r_length="234" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="669"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E433272" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60226" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTCA-TCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>TTGGGTACGGGCCCCCCTTGC--ATCCTCTAT-TCGGCGGAGCAGACGGAGAAGGCATTCCTCAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAA--T----TTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403037" ref_strand="-" ref_description="SGN-E403037 [PPC-9-M24]">
      <seq>tgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63819" stop="58047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60209" g_stop="60142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="168" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="313" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="403" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58348" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="637" r_length="234" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="653"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E403037" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403037" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60209" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>TGCAA-CCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAA--T----TTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397337" ref_strand="+" ref_description="SGN-E397337 [TUS-45-D15]">
      <seq>cacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaaacttttctttcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59209" stop="58052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58909" g_stop="58839" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="161" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58352" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="399" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E397337" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58909" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTAT</genome_strand>
        <mrna_strand>CACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAACTTTTCTTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416535" ref_strand="-" ref_description="SGN-E416535 [STM-23-M17]">
      <seq>agaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatgtgaacttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagtagtaacaagcttttctttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59066" stop="58057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58851" g_stop="58839" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="103" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58352" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="339" r_length="236" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E416535" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416535" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58851" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTAT</genome_strand>
        <mrna_strand>AGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGTAGTAACAAGCTTTTCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433271" ref_strand="-" ref_description="SGN-E433271 [STM-58-A20]">
      <seq>tgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaacttaatgctagtagtaacaagcttttctttcctatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63819" stop="58047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60209" g_stop="60142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="168" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="313" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="403" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58354" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="631" r_length="228" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="652"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E433271" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433271" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60209" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>TGCAA-CCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAA--T----TTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAACTTAATGCTAGTAGTAACAAGCTTTTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347787" ref_strand="+" ref_description="SGN-E347787 [cTOF-26-J15]">
      <seq>attagggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60559" stop="58060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60259" g_stop="60142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="219" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="364" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="454" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58360" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="684" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E347787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60259" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTC</genome_strand>
        <mrna_strand>ATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483068" ref_strand="+" ref_description="SGN-E483068 [cSTE-7-H20]">
      <seq>ctggcggagcagacggagaaggcctttttgaagcagccaggtgtttttctaagctctaagaagacctggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggacttcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatttgagtgtttcttttttaatgtttacatctaggaatgatgtcaaggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattcaaattttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63803" stop="58087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60194" g_stop="60142" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="156" r_length="103" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="301" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="391" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58382" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="591" r_length="200" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E483068" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60194" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACC-GGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGA-TTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTA</genome_strand>
        <mrna_strand>CTGGCGGAGCAGACGGAGAAGGCCTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGACTTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAA--T----TTGAGTGTTTCTTTTTTAATGTTTACATCTAGGAATGATGTCAAGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTCAAATTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557436" ref_strand="+" ref_description="SGN-E557436 [16234]">
      <seq>cctcgtgccgaattcggcacgaggggtttttgctacccagcatctctcgccttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaagactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaatttgagtgtttctgtttttaatgtttacatctaggaatgatgtcaagggcatttctgcttttgctgaattctcgtcttcattgatattcctttgagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60555" stop="58103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60254" g_stop="60142" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="135" r_length="111" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="236" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="381" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58398" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="657" r_length="186" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E557436" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60254" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGA-TGTTTACATCTAGAAATGATGTCAA-GGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTC</genome_strand>
        <mrna_strand>GGTTTTTGCTACCCAGCATCTCTCGCC-TTCATTTCATCTTCCTTTGC-AACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAA--T----TTGAGTGTTTCTGTTTTTAATGTTTACATCTAGGAATGATGTCAAGGGCATTTCTGCTTTTGCTGAATTCTCGTCTTCATTGATATTCC--TTTGAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320753" ref_strand="+" ref_description="SGN-E320753 [cTOB-27-N4]">
      <seq>ttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgnaggttcatgtattgaaggtgattccagccggntctggtgggtgttgggaaaaaagcttttaccggaatgtgacttgagtgtttctattttgatggttacatctagaaatgatgtcaaggcatatctgctttttgctgattttagtcttcattgatattcctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60551" stop="58104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60251" g_stop="60142" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="356" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="446" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58404" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="632" r_length="186" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E320753" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60251" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTG-AGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGT-GGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGC-TTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTG</genome_strand>
        <mrna_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGNAGGTTC-ATGTATTGAAGGTGATTCCAGCCGGNTCTGGTGGGTGTTGGGAAAAAAGCTTTTACCGGAATGTG-ACTTGAGTGTTTCTATTTTGATGGTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTTGCTG-ATTTTAGTCTTCATTGATATTCCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290797" ref_strand="+" ref_description="SGN-E290797 [cLET-10-K19]">
      <seq>caaattagggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaagcatatctgcttttgctgaattttagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60562" stop="58121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60262" g_stop="60142" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="222" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="367" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="457" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58421" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="626" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E290797" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60262" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTC</genome_strand>
        <mrna_strand>CAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAAGCATATCTGCTTTTGCTGAATTTTAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311191" ref_strand="+" ref_description="SGN-E311191 [cLEZ-16-C6]">
      <seq>gtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60553" stop="58129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60253" g_stop="60142" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="213" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="358" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="448" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58429" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="609" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E311191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60253" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTT</genome_strand>
        <mrna_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416604" ref_strand="+" ref_description="SGN-E416604 [STM-23-E10]">
      <seq>cgagggccgttcatttcatcttcctttgcaaccctcaatcatgggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagaagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtgggtgcgggaaaaaagcttttaccgggatgtgaacttgagtggttcttttttaatgtttacatctangaatgatgtcaaggcatttctgcttttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63840" stop="58133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60235" g_stop="60142" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58433" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="588" r_length="157" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E416604" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60235" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCAT-GGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAG-AGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGA</genome_strand>
        <mrna_strand>CGAGGGCCGTTCATTTCATCTTCCTTTGC-AACCCTCAATCATGGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGGTGCGGGAAAAAAGCTTTTACCGGGATGTGAACTTGAGTGGTTCTTTTTTAATGTTTACATCTANGAATGATGTCAAGGCATTTCTGCTTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318979" ref_strand="+" ref_description="SGN-E318979 [cTOB-14-P13]">
      <seq>gcaaattagggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60563" stop="58134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60263" g_stop="60142" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="223" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="368" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="458" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58434" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="614" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E318979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60263" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTG</genome_strand>
        <mrna_strand>GCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378323" ref_strand="+" ref_description="SGN-E378323 [TUS-45-D15]">
      <seq>atgaacagaaccatcattgttcgacccaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgttacatctagaaatgatgtcaggcatatctgcttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59197" stop="58134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58897" g_stop="58839" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="149" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58434" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="303" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E378323" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58897" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTG</genome_strand>
        <mrna_strand>ATGAACAGAACCATCATTGTTCGACCCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATG-TTACATCTAGAAATGATGTC-AGGCATATCTGCTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458644" ref_strand="+" ref_description="SGN-E458644 [cPRO-6-K24]">
      <seq>gttgagttctgcgtcttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagacggggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtattggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggaaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatatgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcagacctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaaaaaagcttttaccggaatgtgagcttggtgcttccattttaattgttacttctaagaatgatgtccatacttctatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63827" stop="58144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60227" g_stop="60142" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="185" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="330" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="420" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58452" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="557" r_length="137" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E458644" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60227" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAG</genome_strand>
        <mrna_strand>GTTGAGTTCTGCGTC-TTGGTAAT-CCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACGGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATTGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGAAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATATGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................ACCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAATGTGAGCTTG-GTGCTTCCATTTTAATTGTTACTTCTAAGAATGATGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319321" ref_strand="+" ref_description="SGN-E319321 [cTOB-16-N16]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58457" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="580" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E319321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATG</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287337" ref_strand="+" ref_description="SGN-E287337 [cLES-15-A13]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattgcctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58491" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="546" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E287337" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGT</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTGCCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620721" ref_strand="+" ref_description="SGN-E620721 [71425]">
      <seq>tgcgataagctaccctcgttgagttctacgtccttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagcctggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggaaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatacattgacaagaaatgtccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaatagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgttttaaaggtgattccagctggttctggtggtggagggaaaaaagcttttaccgggatgtaatcttcattcctccatttcaaaatttgtttttttgtaggaatatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63820" stop="58173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60244" g_stop="60142" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.777"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="203" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="348" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="525" r_length="87" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E620721" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60244" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TGCGATAAGCTACCCTCGTTGAGTTCTACGTC-CTTGGTAATCCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCTGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGAAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACATTGACAAGAAATGTCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAATAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTTTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGAGGGAAAAAAGCTTTTACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350297" ref_strand="+" ref_description="SGN-E350297 [cTOS-4-N18]">
      <seq>tttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60243" g_stop="60142" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="436" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="523" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E350297" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60243" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TTTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319224" ref_strand="+" ref_description="SGN-E319224 [cTOB-16-N24]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60239" g_stop="60142" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E319224" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60239" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339799" ref_strand="+" ref_description="SGN-E339799 [cTOE-16-L20]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60239" g_stop="60142" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E339799" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60239" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281802" ref_strand="+" ref_description="SGN-E281802 [cLER-14-P11]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60232" g_stop="60142" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="512" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E281802" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60232" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TCGCCG-TCAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439031" ref_strand="+" ref_description="SGN-E439031 [cSTA-10-L19]">
      <seq>gccgttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaagttcaatgtattgaaagtgattccagccggttctggtggtggcgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63840" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60230" g_stop="60142" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="189" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="334" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="424" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="511" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E439031" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60230" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GCCGTTCATTTCATCTTCCTTTGC-AACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAAGTTCAATGTATTGAAAGTGATTCCAGCCGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562486" ref_strand="+" ref_description="SGN-E562486 [926]">
      <seq>gaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcggtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactgcctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagcttttaccgggatgtaatcttcgtgcctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63632" stop="58192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60022" g_stop="59937" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="232" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="409" r_length="87" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E562486" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60022" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTC-GTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTGCCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTTACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604995" ref_strand="+" ref_description="SGN-E604995 [57014]">
      <seq>atcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggtgattccagctggttctggtggtggcgggaagaaagctttcaccgggatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59185" stop="58201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58885" g_stop="58839" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58589" g_stop="58503" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E604995" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58885" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>ATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTGATTCCAGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295412" ref_strand="+" ref_description="SGN-E295412 [cLET-23-L19]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58519" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="518" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E295412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571324" ref_strand="+" ref_description="SGN-E571324 [12556]">
      <seq>agacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgagtgctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttggctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagcatcatgttactattggacagtgcaggcctttatccaaaatgtgaggttcaatgtatccgaaggtgattccgagccggttctggtggtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63794" stop="58228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60184" g_stop="60142" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="145" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="291" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="382" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58526" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="447" r_length="65" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E571324" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60184" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAG-GCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTT-GCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAG-ATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTAT-TGAAGGTGATTCC-AGCCGGTTCTGGTGGTGTT</genome_strand>
        <mrna_strand>AGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGTGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGCATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAA-TGTGAGGTTCAATGTATCCGAAGGTGATTCCGAGCCGGTTCTGGTGGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290513" ref_strand="+" ref_description="SGN-E290513 [cLES-20-O11]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaatgcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttatgattcaagactcctcgtgaggctactgaaggtacatatattggcgagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatattaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58555" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="482" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E290513" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAATGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTATGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGGCGAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATTACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269168" ref_strand="+" ref_description="SGN-E269168 [cLEI-16-K18]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaagatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaagcctttatccaaaaccgtgaggttcaatgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60232" g_stop="60142" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58556" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E269168" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60232" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</genome_strand>
        <mrna_strand>TCGCCG-TCAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAAGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAA.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443964" ref_strand="+" ref_description="SGN-E443964 [cSTA-40-L16]">
      <seq>gccgtcagttgattttccttagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60230" g_stop="60142" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="188" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="333" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="423" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58559" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="454" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E443964" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60230" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTA</genome_strand>
        <mrna_strand>GCCGT-CAGTTGATTTTCCTTAGTA-ACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458536" ref_strand="+" ref_description="SGN-E458536 [cPRO-6-E17]">
      <seq>gttgagttctgcgtcttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagacggggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtattggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggaaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtctagaagtatcagagatatgagaagaggcactccaatatcccagctcacatatcaccatgcttccgtgtgaaagaaggagatcatgttactattggacagtgcagacctttatccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63827" stop="58375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60227" g_stop="60142" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="185" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="330" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="420" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58575" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="435" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E458536" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60227" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAAC</genome_strand>
        <mrna_strand>GTTGAGTTCTGCGTC-TTGGTAAT-CCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACGGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATTGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGAAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCTAGAAGTATCAGAG..........................................................................ATATGAGAAGAGGCACTCCAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAAGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................ACCTTTATCCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291768" ref_strand="+" ref_description="SGN-E291768 [cLET-6-P2]">
      <seq>catctgtcggcgacagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttacgatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttgcgtgtgaaagagggagatcatgttactattggacagtgcaggccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60238" g_stop="60142" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58675" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58589" g_stop="58583" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="438" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E291768" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60238" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58675"/>
          <exon e_start="58589" e_stop="58583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTA</genome_strand>
        <mrna_strand>CATCTGTCGGCG-ACAGTTGATCTTCCTTAGTAA-CAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTACGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTGCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281868" ref_strand="+" ref_description="SGN-E281868 [cLES-2-K16]">
      <seq>ttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagaaggagatcatgttactattggacagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60551" stop="58376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60251" g_stop="60142" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="356" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58676" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="445" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E281868" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60251" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCA</genome_strand>
        <mrna_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAAGGAGATCATGTTACTATTGGACAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317493" ref_strand="+" ref_description="SGN-E317493 [cTOB-17-C15]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58679" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="443" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E317493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476768" ref_strand="+" ref_description="SGN-E476768 [cSTB-45-L22]">
      <seq>gtttggcatctctcgccgtcagttgattttccttagtaacgatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaaaggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttctatcagaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaactacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60244" g_stop="60142" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="202" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58679" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="433" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E476768" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60244" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</genome_strand>
        <mrna_strand>GTTTGGCATCTCTCGCCG-TCAGTTGATTTTCCTTAG-TAACGATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAAGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCAGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAACTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291234" ref_strand="+" ref_description="SGN-E291234 [cLET-2-F1]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcggatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcatgaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagagcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58681" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E291234" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGGATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCATGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGAGCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301343" ref_strand="+" ref_description="SGN-E301343 [cLEW-24-G22]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagaaggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58681" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E301343" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAAGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294495" ref_strand="-" ref_description="SGN-E294495 [cLET-14-L18](-)">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60242" g_stop="60142" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58681" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="429" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E294495" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60242" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294494" ref_strand="+" ref_description="SGN-E294494 [cLET-14-L18]">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60242" g_stop="60142" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58681" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="429" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E294494" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60242" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278954" ref_strand="+" ref_description="SGN-E278954 [cLER-2-B13]">
      <seq>ggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60240" g_stop="60142" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58681" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="427" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E278954" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60240" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>GGCATCTCTCGCCG-TCAGTTGATCTTCCTTAGTA-ACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301302" ref_strand="+" ref_description="SGN-E301302 [cLEW-24-L6]">
      <seq>tttttgctaccgagcctttgtcggcgttcagttcaggttcatttgcaaaccctcaatcatggcggagcagactgagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccacgaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgcctcagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttgcgtgtgaaagagggagatcatgttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58688" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="434" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E301302" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGGCGTTCAGTTCAGGTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACTGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCACGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCTCAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTGCGTGTGAAAGAGGGAGATCATGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580737" ref_strand="+" ref_description="SGN-E580737 [5980]">
      <seq>ctcctcgtgaggctactgaaggtacatacattgacaagaaatgtccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaatagaaccatcattgttcgacgcaattatctacattatgtcaagaagtatcagagatacgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60257" stop="58389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59957" g_stop="59937" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="166" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58764" g_stop="58689" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="242" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E580737" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59957" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACT</genome_strand>
        <mrna_strand>CTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACATTGACAAGAAATGTCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAATAGAACCATCATTGTTCGACGCAATTATCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281281" ref_strand="-" ref_description="SGN-E281281 [cLEL-1-G18](-)">
      <seq>gcacgaggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcccacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60554" stop="58406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60261" g_stop="60142" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="365" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58706" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="424" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E281281" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281281" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60261" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAG</genome_strand>
        <mrna_strand>GCACGA-GGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCCCACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280189" ref_strand="-" ref_description="SGN-E280189 [cLEL-7-O24](-)">
      <seq>gcacgaggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttncgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60247" g_stop="60142" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="349" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58710" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="404" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E280189" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60247" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTG</genome_strand>
        <mrna_strand>GC-ACGAGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTNCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397400" ref_strand="+" ref_description="SGN-E397400 [TUS-45-L5]">
      <seq>tttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgtttttttttattacctacattatgtcaagaagtatcggagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60243" g_stop="60142" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58710" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="401" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E397400" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60243" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTG</genome_strand>
        <mrna_strand>TTTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTTTTTTTTATTACCTACATTATGTCAAGAAGTATCGGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280121" ref_strand="-" ref_description="SGN-E280121 [cLEL-7-C15](-)">
      <seq>gcacgagcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63823" stop="58419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60220" g_stop="60142" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="325" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58719" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="371" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E280121" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60220" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGC</genome_strand>
        <mrna_strand>GCACGAGCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301297" ref_strand="+" ref_description="SGN-E301297 [cLEW-24-H24]">
      <seq>tttttggggccgatcctttgggggcgggcacttcatcttcatttgcaaaccctcaatcatggcggagcacacagagaaggcgtttttgaaacatccaactgtttttataagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcagtttaagattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctagtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcatagatacgagaaaagacactccaatattccagctcacatatcaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60543" stop="58420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.86"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58720" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="402" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E301297" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATG</genome_strand>
        <mrna_strand>TTTTTGGGGCCGATCCTTTGGGGGCGGGCACTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCACACAGAGAAGGCGTTTTTGAAACATCCAACTGTTTTTATAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCAGTTTAAGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTAGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCATAG..........................................................................ATACGAGAAAAGACACTCCAATATTCCAGCTCACATATCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301296" ref_strand="+" ref_description="SGN-E301296 [cLEW-24-H22]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60552" stop="58428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="60142" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58728" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="394" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E301296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290383" ref_strand="+" ref_description="SGN-E290383 [cLES-20-K6]">
      <seq>catctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60238" g_stop="60142" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58733" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="373" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E290383" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60238" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTC</genome_strand>
        <mrna_strand>CATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400786" ref_strand="+" ref_description="SGN-E400786 [PPC-2-K5]">
      <seq>caaattagggtttttgctacccagcatctctcgccgttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaagactggtaagggaaagaggccgggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatggttctatccgaggacgtatccttggtggtacatggcacagtggtaagatgaacagaaccctccttggtccacgccattacctaccttatggccagaagtatccgagataccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60562" stop="58532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60262" g_stop="60142" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="221" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58839" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="366" r_length="145" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58764" g_stop="58758" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="373" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E400786" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60262" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58839"/>
          <exon e_start="58764" e_stop="58758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAG</genome_strand>
        <mrna_strand>CAAATTAGGGTTTTTGCTACCCAGCATCTCTCGCCGTTCATTTCATCTTCCTTTGC-AACCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGTAAGGGAAAGAGGCCGGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGGTTCTATCCGAGGACGTATCCTTGGTGGTACATGGCACAGTGGTAAGATGAACAGAACCCTCCTTGGTCCACGCCATTACCTACCTTATGGCCAGAAGTATCCGAG..........................................................................ATACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277177" ref_strand="-" ref_description="SGN-E277177 [cLEL-3-H2](-)">
      <seq>gcacgaggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgttttcgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60247" g_stop="60142" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59937" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58983" g_stop="58856" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="332" r_length="128" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E277177" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60247" e_stop="60142"/>
          <exon e_start="60037" e_stop="59937"/>
          <exon e_start="58983" e_stop="58856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTAT</genome_strand>
        <mrna_strand>GC-ACGAGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTCGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579065" ref_strand="+" ref_description="SGN-E579065 [86189]">
      <seq>tcgccgtcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaaggagtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60505" stop="59673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60232" g_stop="60142" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59973" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="155" r_length="66" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E579065" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60232" e_stop="60142"/>
          <exon e_start="60037" e_stop="59973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAA-GAGTATCG</genome_strand>
        <mrna_strand>TCGCCG-TCAGTTGATCTTCCTCAG-TAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGGAGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294175" ref_strand="+" ref_description="SGN-E294175 [cLET-13-H8]">
      <seq>gtttttgctaccgagcctttgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60553" stop="59691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60253" g_stop="60142" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59991" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="159" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E294175" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60253" e_stop="60142"/>
          <exon e_start="60037" e_stop="59991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATC</genome_strand>
        <mrna_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540497" ref_strand="+" ref_description="SGN-E540497 [TUS-60-M22](-)">
      <seq>agtgttgtgactgatgctacatgctttttctgttcaagtccgttagttgagaggaatttgaggttaagatttgcgttttgttgtttataggatttgggcagctttaagaagcccgggaagggaaagagcccaggaaagggaggcaatcgatactttaagggtatcggtttaggattcaagactcctcgtggggctactgaaggtacatatattgccaagaaatgcccattcactggcaatgtttttatccgaggccgtatccttgctggtacatgccccagtgttaagatgaacaggcccatcattgttggacgcaattccctccattatgtcaagaagtttcagagatttgggaagagcccctccaatattccagctcacatatccccatgtttccgtgtgaaagagggagatcatgttattattggccagtgcaggcctttatccaaaactgtggggttcaatgtattgaaggtgattccacccggttctgggggtgttgggaaaaaagcttttcccggaatgggaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgcggaattctagtcttcatttatacccctttcggagattcaaattttgaaactttatgctagtagtaacaagcttttttttcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63748" stop="5792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63448" g_stop="63247" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.872" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="437" r_length="90" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="679" r_length="242" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61664" i_stop="61175" i_length="490">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61174" g_stop="61163" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="691" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61162" i_stop="61047" i_length="116">
            <donor d_prob="0.501" d_score="0.00"/>
            <acceptor a_prob="0.295" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61046" g_stop="61005" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="733" r_length="42" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E540497" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63448" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
          <exon e_start="61174" e_stop="61163"/>
          <exon e_start="61046" e_stop="61005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTTTAAAAAAAAGTACTTGTGGTGATTTTAGTCTACAGGTACATCGCCATTTGCATATACTTTAGTAAAGCAGATTTTCTTTGTTCTAAAAAAAGAAACCATAAGATGCTACACTTGTGCAACTCTTACTATCTATAGAATGAGTGCGTATATGCTGAAACATTGTGTAACGTAAACATTTTTTTTTGTGTCTGTGTAATGAGGACACAACTAGGATGAGGGGAATTTTACAAATTGGTAGGTTTCTATGTTTCTTTCGATCCAAGACTTGCGGTGAATGAATGTGTAAGTGAATTTTTAAAATCTCTAGTTACCTTACAAGAACAATAATTCATTTCAGTGTCAAACAGTATATTGGGAATATACTCGGTAATAAATCGCTTCTTCCAAAGCGCGCAGAAGACTTTGCAGATATGGTAAGATGACAACTATTCCACAATAAAGAGAGTAGTTTTTTTGAACAACCAACTCTCATTCAAACACATTTCTTATTTTTTCTAGGTTAATCGATTTCTTAGTTTTTTTTAACAGTTATTGATAATTTATGTTTTTTTTTAATTAAGAATCATACACGTGAGAAATATAAAACTAAGACATAAGAGATA</genome_strand>
        <mrna_strand>AGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATAGGATTTGGGCAGCTTTAAGAAGCCCGGGAAGGGAAAGAGCCCAGGAAAGGGAGGCAATCGATACTTTAAGGGTATCGGTTTAGGATTCAAGACTCCTCGTGGGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGCCAAGAAATGCCCATTCACTGGCAATGTTTTTATCCGAGGCCGTATCCTTGCTGGTACATGCCCCAGTGTTAAGATGAACAGGCCCATCATTGTTGGACGCAATTCCCTCCATTATGTCAAGAAGTTTCAGAG............................................................................ATTTGGGAAGAGCCCCTCCAATATTCCAGCTCACATATCCCCATGTTTCCGTGTGAAAGAGGGAGATCATGTTATTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGGGGTTCAATGTATTGAAGGTGATTCCACCCGGTTCTGGGGGTGTTGGGAAAAAAGCTTTTCCCGGAATGGGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCGGAATTCTAGTCTTCATTTATACCCCTTTCGGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTTTTTCCTAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA....................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544656" ref_strand="+" ref_description="SGN-E544656 [TUS-67-B16](-)">
      <seq>gtttttttaagctctaagaagaccggaaagggaaagagcccaggaaagggaggcaatcgatattttaggagtatcggtttaggattcaagactccttgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtttcagagatatgagaagagacactccaatattccagctcacatatccccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccacccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63649" stop="5792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63462" g_stop="63452" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="112" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="257" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="347" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61670" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="584" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61669" i_stop="61047" i_length="623">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.295" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61046" g_stop="61009" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="622" r_length="38" r_score="0.553"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E544656" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63462" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61670"/>
          <exon e_start="61046" e_stop="61009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTTTAAAAAAAAGTACTTGTGGTGATTTTAGTCTACAGGTACATCGCCATTTGCATATACTTTAGTAAAGCAGATTTTCTTTGTTCTAAAAAAAGAAACCATAAGATGCTACACTTGTGCAACTCTTACTATCTATAGAATGAGTGCGTATATGCTGAAACATTGTGTAACGTAAACATTTTTTTTTGTGTCTGTGTAATGAGGACACAACTAGGATGAGGGGAATTTTACAAATTGGTAGGTTTCTATGTTTCTTTCGATCCAAGACTTGCGGTGAATGAATGTGTAAGTGAATTTTTAAAATCTCTAGTTACCTTACAAGAACAATAATTCATTTCAGTGTCAAACAGTATATTGGGAATATACTCGGTAATAAATCGCTTCTTCCAAAGCGCGCAGAAGACTTTGCAGATATGGTAAGATGACAACTATTCCACAATAAAGAGAGTAGTTTTTTTGAACAACCAACTCTCATTCAAACACATTTCTTATTTTTTCTAGGTTAATCGATTTCTTAGTTTTTTTTAACAGTTATTGATAATTTATGTTTTTTTTTAATTAAGAATCATACACGTGAGAAATATAAAACTAAGACATAAGA</genome_strand>
        <mrna_strand>GTTTTTTTAAG........................................................................................................CTCTAAGAAGACCGGAAAGGGAAAGAGCCCAGGAAAGGGAGGCAATCGATATTTTAGGAGTATCGGTTTAGGATTCAAGACTCCTTGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTTTCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCCCCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCACCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716606" ref_strand="+" ref_description="SGN-E716606 [FB17CB08]">
      <seq>ggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatttactgttcatcttgtgataggtctggtgcttgaaccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63864" stop="61307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63564" g_stop="63452" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61607" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="749" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E716606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63564" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTT</genome_strand>
        <mrna_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732832" ref_strand="+" ref_description="SGN-E732832 [LB03BA12]">
      <seq>cgtatggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatttactgttcatcttgtgataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63867" stop="61329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63569" g_stop="63452" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="219" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="364" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="454" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61628" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="733" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="743"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E732832" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63569" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAG</genome_strand>
        <mrna_strand>CGTATGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372620" ref_strand="+" ref_description="SGN-E372620 [TUS-31-O7](-)">
      <seq>gttcagtttattttcatttgcaaaccctcaatcatggcgaagcagacggagaagggcgttttgaagcagccaggtgtttttttaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttttatccgaggccgtatccttgctggtacatgccacagtggtaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttttggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattttagttttcatttatactcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63837" stop="61350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63537" g_stop="63452" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="187" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="332" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="422" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61653" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="676" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="697"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E372620" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63537" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</genome_strand>
        <mrna_strand>GTTCAGTTTATTTTCATTTGCAAACCCTCAATCATGGCGAAGCAGACGGAGAAGGGCGTTTTGAAGCAGCCAGGTGTTTTTTTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTTTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGGTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTTTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTTAGTTTTCATTTATACTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292104" ref_strand="+" ref_description="SGN-E292104 [cLET-1-I7](-)">
      <seq>tatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgttggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagccactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62597" stop="61350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62297" g_stop="62158" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="230" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61906" g_stop="61653" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="484" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="505"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E292104" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62297" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</genome_strand>
        <mrna_strand>TATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGTTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGCCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343135" ref_strand="+" ref_description="SGN-E343135 [cTOF-17-I8]">
      <seq>gtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccggctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcctcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttcttttctattgagatttgagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63849" stop="61355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63549" g_stop="63452" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="199" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="344" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="434" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61655" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="686" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E343135" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63549" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCC</genome_strand>
        <mrna_strand>GTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCGGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCCTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTTCTATTGAGATTTGAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372621" ref_strand="+" ref_description="SGN-E372621 [TUS-31-O7]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattatgaaactttatgctagtagtaacaagcttttctttcctattgagatttggagcccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63862" stop="61350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63562" g_stop="63452" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61659" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="695" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="720"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E372621" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63562" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGA</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTATGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345586" ref_strand="+" ref_description="SGN-E345586 [cTOF-18-E11]">
      <seq>ttagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaatttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63868" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63568" g_stop="63452" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="218" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="363" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="453" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61661" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="698" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E345586" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63568" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTT</genome_strand>
        <mrna_strand>TTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAA-TTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724264" ref_strand="+" ref_description="SGN-E724264 [FC23CC11]">
      <seq>ttggctctccactgcaccttagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63885" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63586" g_stop="63452" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="236" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="381" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="713" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="726"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E724264" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63586" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>TTGGCTCTCCACTGCACCTTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717930" ref_strand="+" ref_description="SGN-E717930 [FC03AF05]">
      <seq>ggctctccactgcatattagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaanaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63883" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63584" g_stop="63452" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="711" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="734"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E717930" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63584" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>GGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738126" ref_strand="+" ref_description="SGN-E738126 [LC12BH10]">
      <seq>cagtgttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63866" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63567" g_stop="63452" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="217" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="362" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="452" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="694" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="708"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E738126" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63567" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>CAGTGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351430" ref_strand="+" ref_description="SGN-E351430 [cTOS-12-L1]">
      <seq>atgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62583" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62283" g_stop="62158" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="216" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="458" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E351430" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62283" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>ATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226291" ref_strand="+" ref_description="SGN-E226291 [cLEL-26-B23](-)">
      <seq>agtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcccttctgagattcaaattttgaaactttatgctagtagtaaccagcttttctttcctattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62525" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62225" g_stop="62158" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="158" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="401" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="429"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E226291" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62225" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGG-AAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>AGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCCTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACCAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226653" ref_strand="+" ref_description="SGN-E226653 [cLEL-26-B23](-)">
      <seq>aagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccaaccggttctggtggtgttgggaaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcccttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62374" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62074" g_stop="61992" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61906" g_stop="61665" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="326" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="354"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E226653" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62074" e_stop="61992"/>
          <exon e_start="61906" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGG-AAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>AAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAACCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCCTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722848" ref_strand="+" ref_description="SGN-E722848 [FC18CB02]">
      <seq>ggctctccactgcatactattaatttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcaaacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctannaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63861" stop="61370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63584" g_stop="63452" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61671" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="705" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="778"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E722848" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63584" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>GGCTCTCCACTGCATACTATTAATTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAAACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745477" ref_strand="+" ref_description="SGN-E745477 [GI|47105601]">
      <seq>ggctctccactgcatattagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggcacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63883" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63584" g_stop="63452" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61671" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="705" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="726"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E745477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63584" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>GGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGCACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243140" ref_strand="+" ref_description="SGN-E243140 [cLEE-2-C18]">
      <seq>ctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62604" stop="61384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="154" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="244" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61906" g_stop="61684" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="467" r_length="223" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E243140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAA</genome_strand>
        <mrna_strand>GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347581" ref_strand="+" ref_description="SGN-E347581 [cTOF-26-K8]">
      <seq>tgcatattagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattggttctaatttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaatttctagtctcatttatactcctttctgagattcaaattttgaactttatgctagtagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63874" stop="61388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63574" g_stop="63452" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="369" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="459" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61688" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="677" r_length="218" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E347581" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63574" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAA-TTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTA</genome_strand>
        <mrna_strand>TGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGGTTCTAATTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTCTAGTC-TCATTTATACTCCTTTCTGAGATTCAAATTTTG-AACTTTATGCTAGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220059" ref_strand="+" ref_description="SGN-E220059 [cLEL-12-A3](-)">
      <seq>tacatatattgacaagaaatgcccattccctggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62601" stop="61384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62301" g_stop="62158" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61906" g_stop="61698" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="443" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="468"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E220059" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62301" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTAT</genome_strand>
        <mrna_strand>TACATATATTGACAAGAAATGCCCATTCCCTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540500" ref_strand="+" ref_description="SGN-E540500 [TUS-60-M22]">
      <seq>tttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaaggtgagtgttgtgactgatgctacatgctttttctgttcaagtccgttagttgagaggaatttgaggttaagatttgcgttttgttgtttatatgatttgggcagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttggggaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctangaatgatgtcnaggcatatttgcttttgctgaaatctagtcttcatttatactccctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63861" stop="61422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63561" g_stop="63247" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="460" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="550" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61906" g_stop="61722" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="736" r_length="186" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E540500" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63561" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACT-CCTTTCT</genome_strand>
        <mrna_strand>TTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGGAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTANGAATGATGTCNAGGCATATTTGCTTTTGCTGAAATCTAGTCTTCATTTATACTCCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270118" ref_strand="+" ref_description="SGN-E270118 [cLEM-7-P13]">
      <seq>gggttttcgctacagagtattcgtcgccgtgcagtttatcttgatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccatgaaagggaggcaatctatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63865" stop="61474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63565" g_stop="63452" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="215" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="360" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="450" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="583" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E270118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63565" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATG</genome_strand>
        <mrna_strand>GGGTTTTCGCTACAGAGTATTCGTCGCCGTGCAGTTTATCTTGATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCATGAAAGGGAGGCAATCTATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204122" ref_strand="+" ref_description="SGN-E204122 [cLEC-27-K21]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttcttgtggtgttgggaaaaaagcttttaccggaatgtgaacttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63862" stop="61507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63562" g_stop="63452" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="547" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E204122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63562" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTG</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTTGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337177" ref_strand="+" ref_description="SGN-E337177 [cTOE-7-J12]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaaagctttaccggaatgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63860" stop="58197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63560" g_stop="63452" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="355" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61814" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="538" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E337177" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63560" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAAC</genome_strand>
        <mrna_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTACCGGAATGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544657" ref_strand="+" ref_description="SGN-E544657 [TUS-67-B16]">
      <seq>ggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63864" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63564" g_stop="63452" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61820" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="536" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E544657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63564" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212118" ref_strand="+" ref_description="SGN-E212118 [cLEC-75-D11]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63860" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63560" g_stop="63452" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="355" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61820" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="532" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E212118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63560" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473410" ref_strand="+" ref_description="SGN-E473410 [cSTB-32-C12]">
      <seq>gccttccgttgatcttcctttcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaagagtatcggcttaggattcaagactcctcgtgagactactgaaggtacgtatattgacaagaaatgcccattcactggcaatgtttcgatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgacgtaattacctacattatgtcaagaagtatcagagatatgagaagaggcactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattgggcagtgcaggcctttatccaaaaccgtgaggttcaatgtcttaaaggttattccagctggttctggtggtggcgggaaaaaagctttcaccgggatgtaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63810" stop="58196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63510" g_stop="63452" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="79" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="325" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="415" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61820" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="502" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E473410" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63510" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGAGTATCGGCTTAGGATTCAAGACTCCTCGTGAGACTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCGATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGACGTAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGGCAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTAAAGGTTATTCCAGCTGGTTCTGGTGGTGGCGGGAAAAAAGCTTTCACCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302442" ref_strand="+" ref_description="SGN-E302442 [cLEW-27-M12]">
      <seq>tttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63831" stop="58245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63531" g_stop="63452" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="181" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="326" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="416" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61862" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="461" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E302442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63531" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCC</genome_strand>
        <mrna_strand>TTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283173" ref_strand="+" ref_description="SGN-E283173 [cLER-17-D17]">
      <seq>gccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgctttcgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63840" stop="58256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63540" g_stop="63452" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61873" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E283173" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63540" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</genome_strand>
        <mrna_strand>GCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTTCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404574" ref_strand="+" ref_description="SGN-E404574 [PPC-14-B11]">
      <seq>taccgataagctatcctcgttgagttctgcgtcttggtaatcctcagtcatggcggagcagacagagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagacggggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtattggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggaaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatatgagaagaggcactcaaatatcccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcagacctttatccaaaaccgcgaggttcaatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63827" stop="58375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63512" g_stop="63452" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="102" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="203" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="348" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61874" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="471" r_length="33" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E404574" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63512" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATT</genome_strand>
        <mrna_strand>CCTCAGTCATGGCGGAGCAGACAGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACGGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATTGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGAAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGGCACTCAAATATCCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................ACCTTTATCCAAAACCGCGAGGTTCAATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292103" ref_strand="+" ref_description="SGN-E292103 [cLET-1-I7]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63862" stop="58270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63562" g_stop="63452" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="61992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61906" g_stop="61887" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="467" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E292103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63562" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="61992"/>
          <exon e_start="61906" e_stop="61887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGA</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337488" ref_strand="+" ref_description="SGN-E337488 [cTOE-11-L15]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccaactcacatatcaccatgctttcgtgtgaaagaaggagatcatgttactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63862" stop="61703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63562" g_stop="63452" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="62003" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="436" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E337488" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63562" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="62003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATT</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAACTCACATATCACCATGCTTTCGTGTGAAAGAAGGAGATCATGTTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289125" ref_strand="+" ref_description="SGN-E289125 [cLES-18-B9]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaaggtgagtgttgtgactgatgctacatgctttttctgttcaagtccgttagttgagaggaatttgaggttaagatttgcgttttgttgtttatatgatttgggcagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63860" stop="61703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63560" g_stop="63247" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="459" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62081" g_stop="62003" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="538" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E289125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63560" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="62003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATT</genome_strand>
        <mrna_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335931" ref_strand="+" ref_description="SGN-E335931 [cTOE-6-K17]">
      <seq>gagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63851" stop="61704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63551" g_stop="63452" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62081" g_stop="62004" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="424" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E335931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63551" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
          <exon e_start="62081" e_stop="62004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTAT</genome_strand>
        <mrna_strand>GAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279283" ref_strand="-" ref_description="SGN-E279283 [cLEL-4-O14](-)">
      <seq>gcacgagctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="58539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63549" g_stop="63452" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62158" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E279283" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63549" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCG-TCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG</genome_strand>
        <mrna_strand>GCACGAGCTCGCCG-TCAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416534" ref_strand="+" ref_description="SGN-E416534 [STM-23-M17]">
      <seq>gccgttcatttcatcttcctttgcaaccctcaatcatggcggagcagacggagaaggcatttttgaagcagccaggtgtttttctaagctctaagaaaactggtaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggcttaggattcaaaactcctcgtgaggctaccgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgccacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63840" stop="58604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63540" g_stop="63452" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63247" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="189" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62302" g_stop="62223" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="269" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E416534" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63540" e_stop="63452"/>
          <exon e_start="63347" e_stop="63247"/>
          <exon e_start="62302" e_stop="62223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGT</genome_strand>
        <mrna_strand>GCCGTTCATTTCATCTTCCTTTGCAA-CCCTCAATCATGGCGGAGCAGACGGAGAAGGCATTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAAACTGGTAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGCTTAGGATTCAAAACTCCTCGTGAGGCTACCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579065" ref_strand="+" ref_description="SGN-E579065 [86189]">
      <seq>tcgccgtcagttgatcttcctcagtaactatcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggggtgtttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatacttcaaggagtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63815" stop="59673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63542" g_stop="63452" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63347" g_stop="63283" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="155" r_length="66" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E579065" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63542" e_stop="63452"/>
          <exon e_start="63347" e_stop="63283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAA-GAGTATCG</genome_strand>
        <mrna_strand>TCGCCG-TCAGTTGATCTTCCTCAG-TAACTATCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGGGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTCAAGGAGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308440" ref_strand="+" ref_description="SGN-E308440 [cLEY-25-P8]">
      <seq>cgcagtcaagttggacacaatagaaagacatgttcaaattatcccgtgcaaaaataatgatttcgtaatgttacatttgttattgtgttgttttgaatgttaaaaacacgttttgttttattgagtgcagttgttatcattgacatttataaagtttgatttcgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64089" stop="64858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64388" g_stop="64565" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E308440" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64388" e_stop="64565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTCAAGTTGTACACAATAGAAAGACATGTTCGAATTATCCTGTGCAAAAACAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACACGTTTTCTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGGTTTCGTAAAAAATTGTCAT</genome_strand>
        <mrna_strand>CGCAGTCAAGTTGGACACAATAGAAAGACATGTTCAAATTATCCCGTGCAAAAATAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAAAAACACGTTTTGTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGATTTCGTACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712757" ref_strand="+" ref_description="SGN-E712757 [FB05DA02]">
      <seq>cattatcttgaagactatccccaatctaataattggagatctccttcgactcctagaaacaagagagctaagatttcgaactccagttctggtggtcatgcttctgtttcccgttcatccagaaagtccaacaggcttgattttgataattccgcttcttatgggtcaggcaattatcatcaccatagattttcaacatccggtgattttgatcattcaacttcttatgggtcatgcaaatatcagcattaccataggtcgtcagcatcgcgatttggtaacagtagccgtggtaggtggagaagaaataatgactggtagtagacattgttactcatgtgtaatataaaggtctgagaactggtcataattcacagagactggttgcacaagctcattagttcatcagggactttatggtggtttgttcaatgagtgtggaactgaggtcgatctcatcatatgtagttccctgtcatttctgtttgtaatttgttatgtcttttgttccctgatgcatcttaattgaattgttactcttctttttgcctgagaggcatgtaactttaaaaagtacaagttaaactgccagctgaaatgcaatttctaatttatttttgaggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67380" stop="66156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67081" g_stop="66460" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="636"/>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E712757" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67081" e_stop="66460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATTGTTACTCATGTGTAATATAAAGGTCTGAGAACTGGTCATAATTCACAGAGACTGGTTGCACAAGCTCATTAGTTCATCAGGGACTTTATGGTGGTTTGTTCAATGAGTGTGGAACTGAGGTCGATCTCATCATATGTAGTTCCCTGTCATTTCTGTTTGTAATTTGTTATGTCTTTTGTTCCCTGATGCATCTTAATTGAATTGTTACTCTTCTTTTTGCCTGAGAGGCATGTAACTTTAAAAAGTACAAGTTAAACTGCCAGCTGAAATGCAATTTCTAATTTATTTTTGAG</genome_strand>
        <mrna_strand>CATTATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATTGTTACTCATGTGTAATATAAAGGTCTGAGAACTGGTCATAATTCACAGAGACTGGTTGCACAAGCTCATTAGTTCATCAGGGACTTTATGGTGGTTTGTTCAATGAGTGTGGAACTGAGGTCGATCTCATCATATGTAGTTCCCTGTCATTTCTGTTTGTAATTTGTTATGTCTTTTGTTCCCTGATGCATCTTAATTGAATTGTTACTCTTCTTTTTGCCTGAGAGGCATGTAACTTTAAAAAGTACAAGTTAAACTGCCAGCTGAAATGCAATTTCTAATTTATTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402992" ref_strand="+" ref_description="SGN-E402992 [PPC-9-E18]">
      <seq>gcggtactgggtcacttaatccctgctatagatgtggtgaagaaggtcattttgcacgcgaatgtactaatcccagcagagtcaataagcggaaacatgaattatcaacccccacgaagaaagtccccaagaaaagaaacgagcaaaaagagttcaggtctgtacctcgtgattttggtagggcatggaagaagaaaggaaaaattgaaggcggatatacgtcaggctataaggtgaaacgaaggggaggttgggtccctgatgatcctgaagactatccccaatctaataattggagatctccttcgactcctagaaataagagagctaagatttcgaactccagttctggtggtcatgcttctgtttcccgttcatccagaaagcccaacaggcttgattttgataattccacttcttatgggtcaggcaactatcaccaccataggttttcaacatctggtgattttgatcattcaacttcttatgggtcaggcagatatcagcattaccataggtcgtcagcatcgcgatttggcaacagtagccacgacaggtggaggagcaataatgattggtagtagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67785" stop="66455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67485" g_stop="67406" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67405" i_stop="67262" i_length="144">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67261" g_stop="66753" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="589" r_length="509" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E402992" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67485" e_stop="67406"/>
          <exon e_start="67261" e_stop="66753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTACTGGGTCACTTAATCCCTGCTATAGATGTGGTGAAGAAGGTCATTTTGCACGCGAATGTACTAATCCCAGCAGAGTAAGTTGTTTTATTCTTGTATGGCATATGCTTCTCTTTTCATTTTGATTCCTGTATCGTTTTTCGTTTTAAGTTAGTTGTGCTTTACTACATAATATCTTATCCATAATGAAACCTTATTATTGTTCTGTTTTGTGTCTATAGGTCAATAAGCGGAAACATGAATTATCAACCCCCAAGAAGAAAGTCCCCAAGAAAAGAAATGAGCAAAAAGAGTTCAAGTCTGTACCTCGTGATTTTGGTAGGGCATGGAAGAAGAAAGGAAAAACTGAAGGCGGATATACGTCGGGCTATAAGGTGAAACGAAGGGGCGGTTGGGTCCCGGATGATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATT</genome_strand>
        <mrna_strand>GCGGTACTGGGTCACTTAATCCCTGCTATAGATGTGGTGAAGAAGGTCATTTTGCACGCGAATGTACTAATCCCAGCAGA................................................................................................................................................GTCAATAAGCGGAAACATGAATTATCAACCCCCACGAAGAAAGTCCCCAAGAAAAGAAACGAGCAAAAAGAGTTCAGGTCTGTACCTCGTGATTTTGGTAGGGCATGGAAGAAGAAAGGAAAAATTGAAGGCGGATATACGTCAGGCTATAAGGTGAAACGAAGGGGAGGTTGGGTCCCTGATGATCCTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAATAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGCCCAACAGGCTTGATTTTGATAATTCCACTTCTTATGGGTCAGGCAACTATCACCACCATAGGTTTTCAACATCTGGTGATTTTGATCATTCAACTTCTTATGGGTCAGGCAGATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGCAACAGTAGCCACGACAGGTGGAGGAGCAATAATGATTGGTAGTAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587591" ref_strand="+" ref_description="SGN-E587591 [41125]">
      <seq>cggactccttgaccagtgaagaatgcctctcttttaaattttcaccaaagtggtcaggttttctatgctgacctattgtgctatgcgtgtcaatttacttaaaataacatttaattatcttttagcttttctgcaaagcctttttaaatttttccttcgcaattccataggcccttgtgtgatgcatattatttatatgaacttgcctagttcacccgtgctcaagcatatggtgcattttttggtcgacataatgttgagtagttgataatactgtatagctgaccccaagtagtatgagattgtgtacaagctgattgactgacagtataatcatgcacatgccactgtatcatcttcacttcaatcaggaagcaacttgtgcttgtttttagtttgataggaatttggatagggtaaaattattaattgccattgcagcatggttcagagtcttctgtagctagtgatgtcaggcttcatctgtaagttcttcaacaatgtaggttacacaggctaacaaggtaatacccatgggggagcaaagtgaaattgtgatctttcttttggaccttaaaacacatactatattttttccatattttggcgatagactgatagagtatgttatgcactcttctttctttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68929" stop="67683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68629" g_stop="67983" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E587591" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68629" e_stop="67983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACTCCTTGACCAGTGAAGAGTGCCTCTCTTTTAAATGTTCTCCAAAGTCGTCAGGTCTTCTATGCTGACCTATTGTGCTATGCGTGTCCATTTCCTTAAAATAACATTTAATTATCTTTTAGC-TTTCTGCAAAGCCTTTTTTAAATTTTTCCTTAGCAATTCCCTAGACCCTTGTGTGATG--TATAGTTTGTACGAACTTGCCTAGTTCACCTGTGCTCAAGCATATGGTGCATTTTTTGGTCGACATAATTTTGAGTAATTGATAAAACTGTATAGCTGACCCCAAGTAGTATGAAATTGTGTAGATGCTGATTGCAGGACAGTATAATCATGCATATGCCATTGTAGCATCTTCGCTTCAATCAGGAAGCAAATTAAGCTTGTTTTTAGTTTGATAGGAATTTGGATAGGGTAAAATTATTACTTGCCATTGTAGCATGGTTCAGAGTTTTCTGTAGCTAGTGATGTCAGGCTTCATCCATAAGTTCTTCAACTATGTAGGTTACACAGGTGAACAAGGTAACACCCATGGGGGAGCAAAGTGAAATTGTGATTTTTCTTTTGGACCTTAAAACAC--ACTATATTATTTCCATATTTTGGCGATAGACTGACAGAGTATGTTATGCACTCTGCTTTGTTTGAGC</genome_strand>
        <mrna_strand>CGGACTCCTTGACCAGTGAAGAATGCCTCTCTTTTAAATTTTCACCAAAGTGGTCAGGTTTTCTATGCTGACCTATTGTGCTATGCGTGTCAATTTACTTAAAATAACATTTAATTATCTTTTAGCTTTTCTGCAAAGCC-TTTTTAAATTTTTCCTTCGCAATTCCATAGGCCCTTGTGTGATGCATATTATTTATATGAACTTGCCTAGTTCACCCGTGCTCAAGCATATGGTGCATTTTTTGGTCGACATAATGTTGAGTAGTTGATAATACTGTATAGCTGACCCCAAGTAGTATGAGATTGTGTACAAGCTGATTGACTGACAGTATAATCATGCACATGCCACTGTATCATCTTCACTTCAATCAGGAAGCAACTTGTGCTTGTTTTTAGTTTGATAGGAATTTGGATAGGGTAAAATTATTAATTGCCATTGCAGCATGGTTCAGAGTCTTCTGTAGCTAGTGATGTCAGGCTTCATCTGTAAGTTCTTCAACAATGTAGGTTACACAGGCTAACAAGGTAATACCCATGGGGGAGCAAAGTGAAATTGTGATCTTTCTTTTGGACCTTAAAACACATACTATATTTTTTCCATATTTTGGCGATAGACTGATAGAGTATGTTATGCACTCTTCTTTCTTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623146" ref_strand="+" ref_description="SGN-E623146 [88235]">
      <seq>gagaaatctgtctgatggataagcaggaaaagaaggagaaatcagaaggattgaattccgaatccagtttgatgcgcagtgagaacgaagaggcggaggccaacgaggatcgcagcttgaaaatcgtagagaaggctatgataccggcatcatgttccaatgtcattgaagaggaagaagctgagattttgacgaatatcgaaatggtgtcaggtggaattgacaagggtttcaaaagcttctgcagggacatgtttccggtagtctgaaattgcctgctgtaaattgtcgagtagatttttgcaacttgcatattactgcttattcttttgcttgttgcattgcttgctttcttcagaaagctagcatcctattcgatgtttgtcttgacatataggtttaagagggttctttatttttggtgttatctcggtggtaatgcaggaaatataaaattaacagttgaaaagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="-" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72906" stop="71612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72606" g_stop="72401" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72400" i_stop="72178" i_length="223">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72177" g_stop="71912" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="473" r_length="267" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="-" ref_id="SGN-E623146" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72606" e_stop="72401"/>
          <exon e_start="72177" e_stop="71912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCTGCCTGATGGATAAGCAGGAAAAGAAGGAGAAATCAGTAGGATTGGATTCTGAATCCAGTTTAATGCGCAGCGTGGACGAAGAAGCGGAGTCTAACGAGGATCGCAGCTTGAAAATCGTAGAGAAGGCTATGATACCGGCATCATGTTCCAATGTCATTGAAGAGGAAGAAGCTGAGATTTTGACGAATATTGAAATGGTAAGTGGAAATTGCAAGGAAGTAAAGTGGAGGAAAAAATGACCATATTATTGTGACCGAAGAGGATCATGGCAGTGGTTGAATTACTCATTTCTATTGCTGTTAGTTGTTATTTGGATTGAGAGTCACTAGAGGGAGCATGCTTATGTAGCATTTATAAGTTGAGTTAATCGCACTAACGTGTGGTTGACTAATCGGACTCCTTCTCGATTTCGTTGTGCAGGTGTCAGGTGGAATTGACAAGGGTTTCAAAAGCTTCTGTAGGGACATGTTTCCGGTAGTCTGAAATTGCCTGCTGTAAATTGTCGAGTAGATTTTTGCAACTTGCATATTGCTGCTTATTCTTTTGCTTGTTGCCTTGCCAGCTTTCTTCCGAAAACTAGCATCCTCTTTGATGTTTGTCTTGATACATTGGTTTAAGAGGTTTCTTCATTTTT-GTGTTATCTCAGTGGTAATGCAGGAAATATAAAACTAACAGTTGAAAAGTTA</genome_strand>
        <mrna_strand>GAGAAATCTGTCTGATGGATAAGCAGGAAAAGAAGGAGAAATCAGAAGGATTGAATTCCGAATCCAGTTTGATGCGCAGTGAGAACGAAGAGGCGGAGGCCAACGAGGATCGCAGCTTGAAAATCGTAGAGAAGGCTATGATACCGGCATCATGTTCCAATGTCATTGAAGAGGAAGAAGCTGAGATTTTGACGAATATCGAAATG...............................................................................................................................................................................................................................GTGTCAGGTGGAATTGACAAGGGTTTCAAAAGCTTCTGCAGGGACATGTTTCCGGTAGTCTGAAATTGCCTGCTGTAAATTGTCGAGTAGATTTTTGCAACTTGCATATTACTGCTTATTCTTTTGCTTGTTGCATTGCTTGCTTTCTTCAGAAAGCTAGCATCCTATTCGATGTTTGTCTTGACATATAGGTTTAAGAGGGTTCTTTATTTTTGGTGTTATCTCGGTGGTAATGCAGGAAATATAAAATTAACAGTTGAAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378912" ref_strand="+" ref_description="SGN-E378912 [TUS-1-K15]">
      <seq>atttatgttctcttcctttatttaatggttctttttttaagaaaaaacaaaataagaactttttggagaaaagaatgttggggggttgaaccttaatagctttcttgtaaagaaagcagctgcccaatttgtttttacgtcgtttatgatggagctaaaattttcattaaagagtttaaaatataaaaaattaaatatataaaaaagtcgaaagtattcaatatttagtcatttataatatagataaaaaaatttttttaactatatatgagtaatatattttttgcacagaagagaattcgatgaaccctaagccagagacgaacccagattttgaaaactttgggtgcactatataagctctaaagtaaattaaaaaataaaataagtgacgccacttgtttataccaactgcacaagaacatataggtgcactatttattatattcttttttatatatatttaaatcattttttcaaaattagcgattacatgtacatcgttactaagccatgtgggtccgcttgcctaaggccctcactagctccgatccttccttgtgcatgaatatcttaaattgtagaattattgttctgtttcacatttagtgtcatacctttttaattcataaattaaatgcacatgcaatttttcttttgaagacgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99730" stop="100999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100030" g_stop="100699" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E378912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100030" e_stop="100699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</genome_strand>
        <mrna_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200890" ref_strand="+" ref_description="SGN-E200890 [cLEC-5-G6]">
      <seq>atttatgttctcttcctttatttaatggttctttttttaagaaaaaacaaaataagaactttttggagaaaagaatgttggggggttgaaccttaatagctttcttgtaaagaaagcagctgcccaatttgtttttacgtcgtttatgatggagctaaaattttcattaaagagtttaaaatataaaaaattaaatatataaaaaagtcgaaagtattcaatatttagtcatttataatatagataaaaaaatttttttaactatatatgagtaatatattttttgcacagaagagaattcgatgaaccctaagccagaaaccaacccagattttgaaaactttgggtgccctttataagctctaaagtaaattaaaaaataaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99730" stop="100717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100030" g_stop="100417" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E200890" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100030" e_stop="100417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAA</genome_strand>
        <mrna_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAAACCAACCCAGATTTTGAAAACTTTGGGTGCCCTTTATAAGCTCTAAAGTAAATTAAAAAATAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379543" ref_strand="+" ref_description="SGN-E379543 [TUS-1-K15](-)">
      <seq>gaagtttgttgagagttgaaaatgtgtttagattgtgtagcctataattttttttaaaaaaatgtggaagttttggaaacaaatctttgaaaattggaaaccattattccacataggtgtgtaaagggtattgtgtaatgttttgatcagttagattcacatgttgtttacatgtaaaatattaaagttaaattttggtaaatttcttctggcatccgtgtaattactttaactaatgagatactgtttttgtcgtaattaaaaggcgaattcaaaattcaaaaataagaaaaatttctagcttgttgggtcccgtggggagtatcatggtgaatgacaagtgacataagtgttgaacaagaagaaaactgatgattggaacatgtcaaatgaataggttcaacgtaattgactgacgtattttgcagcaagtgttgatgaggaagtaagctgacaattgaaatatgtcaaaagaaccagttcaacaacgatggtaaaattagagtcgcactaggattaattttaattatatttattagaattatatttggactagaattagattaaaattagaattatagtatcacgaggatttgattatttataattgcactattattattattataatagtaatatatattgtagtagaactctaagtattgttaaaataggagatcaactatttattatatcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100491" stop="101766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100791" g_stop="101491" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E379543" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100791" e_stop="101491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGA-CTCAACTATTTATTATTATCATCAA</genome_strand>
        <mrna_strand>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGAGATCAACTATTTATTA-TATCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365661" ref_strand="+" ref_description="SGN-E365661 [cLPT-8-A1]">
      <seq>cgaggattacttggaagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgctttttttcggttcaacagatcgctatcaaacgtaatcgcatctatacatatttctgattgaaaattgtgttcaatttgattcgaaaatcgacggattttacctacagattcatccaatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtatttggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggatgatttggctcggatgcagcaacagatgatgtctaatcctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103460" stop="104991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103755" g_stop="104135" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104136" i_stop="104671" i_length="536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104672" g_stop="104691" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="401" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E365661" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103755" e_stop="104135"/>
          <exon e_start="104672" e_stop="104691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTT</genome_strand>
        <mrna_strand>CGAGGATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGCTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCATCTATACATATTTCTGATTGAAAATTGTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGATGATTTGGCTCGGATGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364831" ref_strand="+" ref_description="SGN-E364831 [cLPT-4-K2]">
      <seq>aagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgctttttttcggttcaacagatcgctatcaaacgtaatcgcatctatacatatttctgattgaaaattgtgttcaatttgattcgaaaatcgacggattttacctacagattcatccaatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtatttggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggatgatttggctcggatgcagcaacagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccggatgacttaaaggttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcaaggaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103469" stop="105207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103769" g_stop="104135" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104136" i_stop="104671" i_length="536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104672" g_stop="104902" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="598" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E364831" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103769" e_stop="104135"/>
          <exon e_start="104672" e_stop="104902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG</genome_strand>
        <mrna_strand>AAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGCTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCATCTATACATATTTCTGATTGAAAATTGTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGATGATTTGGCTCGGATGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604259" ref_strand="+" ref_description="SGN-E604259 [74392]">
      <seq>ttacgaattgcgatttctctactggtaggcgtccaaaatccaaccaattacgaccattcctcttcatttctctcgtcttttttcggttccacagatcgctatcaaacgtaatcgcgtatatacatatttctgattgaaaattacgttcaatttgattaaaaaatcgacggattttgcctacagattcatccaatttcgcctgattttgaattgagaattcaagggaagatcagattattcgactgtgtatttggtagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggctgatttggctcggatgcagcagcagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccagatgacttaaaggttgctgcagaacagttgaagcatacccatcctgaggatatggctgagattggtaagaaaatggctaatgcgtcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacaaccagcggaaagtttaacggaggccctgcagaaatattcgcttgcaaagaaaaactctgtcaagcattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaaccatgatgtcatgttacttaaaaactggacatacgatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103481" stop="106013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103782" g_stop="104135" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104136" i_stop="104671" i_length="536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104672" g_stop="104902" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="585" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104903" i_stop="105458" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105459" g_stop="105515" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="644" r_length="59" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105516" i_stop="105603" i_length="88">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105604" g_stop="105713" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="755" r_length="111" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E604259" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103782" e_stop="104135"/>
          <exon e_start="104672" e_stop="104902"/>
          <exon e_start="105459" e_stop="105515"/>
          <exon e_start="105604" e_stop="105713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAG-GGAAAGTTTAA-GGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAA-TCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAA-CATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTG</genome_strand>
        <mrna_strand>TTACGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACCAATTACGACCATTCCTCTTCATTTCTCTCGTCTTTTTTCGGTTCCACAGATCGCTATCAAACGTAATCGCGTATATACATATTTCTGATTGAAAATTACGTTCAATTTGATTAAAAAATCGACGGATTTTGCCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGAATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGTAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCAGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACCCATCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCGTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAACCAGCGGAAAGTTTAACGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAACTCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACCATGATGTCATGTTACTTAAAAACTGGAC-ATACGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449178" ref_strand="+" ref_description="SGN-E449178 [cSTS-5-J19]">
      <seq>gatttctctactggtaggcgtccaaaatccaaccattacgaccattcctcttcatttctctcgtcttttttcggttccacagatcgctatcaaacgtaatcgcgtatatacatatttctgattgaaaattacgttcaatttgattcaaaaatcgacggattttgcatacagattcagccaatttcgcctgattttgaattgagaattcaagggaagatcagattattcgactgtgtatttggtagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggctgatttggctcggatgcagcagcagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccagatgacttaaaggttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcgtcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacagccagggaaagtttaaggaggccctgcagaaatattcgcttgcaaagaaaaatctgtcaagcattcctgccgcgaaaggcangagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103493" stop="105994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103793" g_stop="104135" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104136" i_stop="104671" i_length="536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104672" g_stop="104902" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="573" r_length="231" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104903" i_stop="105458" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105459" g_stop="105515" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="630" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105516" i_stop="105603" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105604" g_stop="105694" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="721" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E449178" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103793" e_stop="104135"/>
          <exon e_start="104672" e_stop="104902"/>
          <exon e_start="105459" e_stop="105515"/>
          <exon e_start="105604" e_stop="105694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAA</genome_strand>
        <mrna_strand>GATTTCTCTACTGGTAGGCGTCCAAAATCCAAC-CATTACGACCATTCCTCTTCATTTCTCTCGTCTTTTTTCGGTTCCACAGATCGCTATCAAACGTAATCGCGTATATACATATTTCTGATTGAAAATTACGTTCAATTTGATTCAAAAATCGACGGATTTTGCATACAGATTCAGCCAATTTCGCCTGATTTTGAATTGAGAATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGTAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCAGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCGTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCANGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444091" ref_strand="+" ref_description="SGN-E444091 [cSTA-41-I4]">
      <seq>ggctgcagccaaaatccaaccaattacgaccattcctcttcatttctctcgtcttttttcggttccacagatcgctatcaaacgtaatcgcgtatatacatatttctgattgaaaattacgttcaatttgattaaaaaatcgacggattttgcctacagattcatccaatttcgcctgattttgaattgagaattcaagggaagatcagattattcgactgtgtatttggtagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggctgatttggctcggatgcagcagcagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccagatgacttaaaggttgctgcagaacagttgaagcatacccatcctgaggatatggctgagattggtaagaaaatggctaatgcgtcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103510" stop="105213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103806" g_stop="104135" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104136" i_stop="104671" i_length="536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104672" g_stop="104902" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="561" r_length="231" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E444091" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103806" e_stop="104135"/>
          <exon e_start="104672" e_stop="104902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG</genome_strand>
        <mrna_strand>GGCTGCAGCCAAAATCCAACCAATTACGACCATTCCTCTTCATTTCTCTCGTCTTTTTTCGGTTCCACAGATCGCTATCAAACGTAATCGCGTATATACATATTTCTGATTGAAAATTACGTTCAATTTGATTAAAAAATCGACGGATTTTGCCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGAATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGTAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCAGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACCCATCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCGTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365323" ref_strand="+" ref_description="SGN-E365323 [cLPT-2-O18]">
      <seq>ttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacagccagggaaagtttaaggaggccctgcagaaatattcgcttgcaaagaaaaatctgtcaagcattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaactggacaatacgatgactgcatcaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcacctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaggaaggtggtgcttcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104445" stop="106963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104745" g_stop="104902" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104903" i_stop="105458" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105459" g_stop="105515" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="215" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105516" i_stop="105603" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105604" g_stop="105732" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="344" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105733" i_stop="106241" i_length="509">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106242" g_stop="106319" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="422" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106436" g_stop="106506" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="493" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106621" g_stop="106663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="536" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E365323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104745" e_stop="104902"/>
          <exon e_start="105459" e_stop="105515"/>
          <exon e_start="105604" e_stop="105732"/>
          <exon e_start="106242" e_stop="106319"/>
          <exon e_start="106436" e_stop="106506"/>
          <exon e_start="106621" e_stop="106663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGA</genome_strand>
        <mrna_strand>TTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATCAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCACCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416919" ref_strand="+" ref_description="SGN-E416919 [STM-24-C21]">
      <seq>cgagggcattcctgccgcgaaagtccggagtatctcactggcttgttccttgaacacgatgtcatgttacttaaaaacctggacaatacgatgactgcataaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaggaaggtggtgcttcaagaacgtagaggaggattggttattgaagaaataactgaagaagaaccattagtgtcttcagaagctgtggatagttcatttccaaaaagtgttgcatcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctttaaaaaatgaccccgaatcgatgagatccttccagaattttatttctcgcgctgatccagacactctatctgccttaagtggtggaaaatgccgaagcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccggaagaactacaaagaatggtccggttggcttcctcctttcaggagaaaatccctttcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105323" stop="108751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105618" g_stop="105732" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105733" i_stop="106241" i_length="509">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106242" g_stop="106319" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="194" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106436" g_stop="106506" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="265" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106621" g_stop="106664" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="310" r_length="45" r_score="0.909"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91">
            <donor d_prob="0.938" d_score="0.91"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106756" g_stop="106963" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="518" r_length="208" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108260" g_stop="108451" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="709" r_length="191" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E416919" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105618" e_stop="105732"/>
          <exon e_start="106242" e_stop="106319"/>
          <exon e_start="106436" e_stop="106506"/>
          <exon e_start="106621" e_stop="106664"/>
          <exon e_start="106756" e_stop="106963"/>
          <exon e_start="108260" e_stop="108451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAA-CTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAG-ACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGG-AAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAA</genome_strand>
        <mrna_strand>CGAGGGCATTCCTGCCGCGAAAGTCCGGAGTATCTCACTGGCTTGTTCCTTGAACACGATGTCATGTTACTTAAAAACCTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGAAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAACTGAAGAAGAACCATTAGTGTCTTCAGAAGCTGTGGATAGTTCATTTCCAAAAAGTGTTGCATCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACTCTATCTGCCTTAAGTGGTGGAAAATGCCGAA-GCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCGGAAGAACTACAAAGAATGGTCCGGTTGGCTTCCTCCTTTC-AGGAGAAAATCCCTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439812" ref_strand="+" ref_description="SGN-E439812 [cSTA-13-L5]">
      <seq>gccattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaacctggacaatacgatgactgcataaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaggaaggtggtgcttcaagacgtagaggaggattggttattgaagaaataactgaagaagaaccattagtgtcttcagaagctgtggatagttcatttccaaaaagtgttgcatcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctttaaaaaatgaccccgaatcgatgagatccttccagaattttatttctcgcgctgatccagacactctatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105324" stop="108606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105622" g_stop="105732" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105733" i_stop="106241" i_length="509">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106242" g_stop="106319" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="190" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106436" g_stop="106506" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="261" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106621" g_stop="106664" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="305" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91">
            <donor d_prob="0.938" d_score="0.95"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106756" g_stop="106963" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="513" r_length="208" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108260" g_stop="108306" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="560" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E439812" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105622" e_stop="105732"/>
          <exon e_start="106242" e_stop="106319"/>
          <exon e_start="106436" e_stop="106506"/>
          <exon e_start="106621" e_stop="106664"/>
          <exon e_start="106756" e_stop="106963"/>
          <exon e_start="108260" e_stop="108306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAA-CTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTG</genome_strand>
        <mrna_strand>GCCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACCTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAACTGAAGAAGAACCATTAGTGTCTTCAGAAGCTGTGGATAGTTCATTTCCAAAAAGTGTTGCATCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACTCTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440643" ref_strand="+" ref_description="SGN-E440643 [cSTA-17-N16]">
      <seq>acttaaaaactggacaatacgatgactgcataaaggaagatagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaggagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtacaagaaagattggtgaaggaaggtggtgcttcaagatgtagaggaggattggttattgaagaaataactgaagaagaaccattagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105386" stop="107106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105686" g_stop="105732" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105733" i_stop="106241" i_length="509">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106242" g_stop="106319" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106436" g_stop="106506" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="196" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106621" g_stop="106664" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="240" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91">
            <donor d_prob="0.938" d_score="0.91"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106756" g_stop="106806" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="291" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E440643" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105686" e_stop="105732"/>
          <exon e_start="106242" e_stop="106319"/>
          <exon e_start="106436" e_stop="106506"/>
          <exon e_start="106621" e_stop="106664"/>
          <exon e_start="106756" e_stop="106806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGT</genome_strand>
        <mrna_strand>ACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGATAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAGGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTACAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGAT...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAACTGAAGAAGAACCATTAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275741" ref_strand="+" ref_description="SGN-E275741 [cLEN-18-A11]">
      <seq>ggttttgacatatgacgaccagaatatgaaagctctttatcgtacgggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtgcaagaaagattggtgaaagaaggtggttcttcaagacgtagaggaggattggttattgaagaaataattgaggaagaaccattattgtcttcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105941" stop="107212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106241" g_stop="106319" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106436" g_stop="106506" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="150" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106621" g_stop="106664" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="194" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106756" g_stop="106912" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="351" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E275741" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106241" e_stop="106319"/>
          <exon e_start="106436" e_stop="106506"/>
          <exon e_start="106621" e_stop="106664"/>
          <exon e_start="106756" e_stop="106912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTT</genome_strand>
        <mrna_strand>GGTTTTGACATATGACGACCAGAATATGAAAGCTCTTTATCGTACGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTGCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAGGAAGAACCATTATTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442785" ref_strand="+" ref_description="SGN-E442785 [cSTA-34-P16]">
      <seq>gcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaggaaggtggtgcttcaagacgtagaggaggattggttattgaagaaataactgaagaagaaccattagtgtcttcagaagctgtggatagttcatttccaaaaagtgttgcatcacaaccacgtgaatcgatcagccctcctaagagtcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106139" stop="107189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106439" g_stop="106506" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106621" g_stop="106664" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="112" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91">
            <donor d_prob="0.938" d_score="0.95"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106756" g_stop="106889" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="246" r_length="134" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E442785" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106439" e_stop="106506"/>
          <exon e_start="106621" e_stop="106664"/>
          <exon e_start="106756" e_stop="106889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAAT</genome_strand>
        <mrna_strand>GCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAACTGAAGAAGAACCATTAGTGTCTTCAGAAGCTGTGGATAGTTCATTTCCAAAAAGTGTTGCATCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201633" ref_strand="+" ref_description="SGN-E201633 [cLEC-11-B15]">
      <seq>gtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctctaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatgctcctttcaaggagaaaatccctttcttaaaaaaggatcctcaaatagctatggccctggctcagttcctacaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106518" stop="108754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106818" g_stop="106963" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108260" g_stop="108538" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="425" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E201633" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106818" e_stop="106963"/>
          <exon e_start="108260" e_stop="108538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAA</genome_strand>
        <mrna_strand>GTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTCTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATGCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGATCCTCAAATAGCTATGGCCCTGGCTCAGTTCCTACAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205652" ref_strand="+" ref_description="SGN-E205652 [cLEC-21-J18]">
      <seq>ctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106627" stop="108754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106927" g_stop="106963" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108260" g_stop="108754" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="532" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E205652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106927" e_stop="106963"/>
          <exon e_start="108260" e_stop="108754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTT</genome_strand>
        <mrna_strand>CTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228258" ref_strand="+" ref_description="SGN-E228258 [cLED-2-B20]">
      <seq>tttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0203N09-4FoVM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0203N09.1" temp_strand="+" temp_description="C06HBa0203N09.1  AC219216.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0203N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106637" stop="108754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106937" g_stop="106963" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108260" g_stop="108754" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="522" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0203N09.1" gen_strand="+" ref_id="SGN-E228258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0203N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106937" e_stop="106963"/>
          <exon e_start="108260" e_stop="108754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTT</genome_strand>
        <mrna_strand>TTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>186</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1784" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1784" e_stop="1643"/>
            <exon e_start="1032" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1784" e_stop="1643" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1642" i_stop="1033" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="1032" e_stop="1" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1784" stop="1643"/>
              <exon start="1032" stop="829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1732" stop="1643"/>
              <exon start="1032" stop="672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1032" stop="300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="700" stop="298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="636" stop="163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="631" stop="299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="607" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="607" stop="38"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="603" stop="164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="442" stop="14"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGTCCCCCACCCTTTCTTCTCTATTTCTTACTTATCTTTCTTCTCTGTTTCCATATAGTCTCTTAAAAAATGGTCAAATTATTATTCTCCTAAGTAGAGAAAAAGAGTTTAATCAAATTTTTTCAAATATCATAAATTCAG : GATTAAATATCGCGTAATTTGGATTGATGAGTGTTGAGAAAGGACAGGATAATCTGTGAAAAAATTGGGTGTTAGCTGCTAGTTCTGTTTAGATTTCTTGACGTTTGGTGATTAGTTTTTTGGAGGAGTTTGTTCTTGTGAAGATGATGATGTTTGAGGAAATGGGGTTCTGTGGGGATCTTGATTTCTTTCCTGCTCCGCTTAAGGAAGTGGAGGTGGCTGCTCCACAGACTGAGGCAGAGCAGGTGGTGGATGATGATTATAGTGATGAGGATATTGATGTGGATGAGCTAGAGAAGAGAGTGTGGAGGGACAAGATGAAGCTGAAAAGGCTGAAAGAAATGAATCAGGGGATGGAAGATGTTGATTCTGTCAAACGACGCCAGTCACAGGAGCAGGCAAGGAGGAAGAAGATGTCGAGGGCACAGGATGGGATCTTGAAGTACATGTTGAAAATGATGGAAGTATGTAAAGCTCAGGGTTTTGTTTATGGGATCATTCCGGAGAAAGGCAAGCCGGTTGGTGGGGCATCTGATAATCTTAGGGAGTGGTGGAAGGATAAAGTGAGATTTGATCGCAATGGCCCTGCCGCTATAGCCAAATACCAGGCTGAGCATGCTATCCCAGGCAAGAATGACGTATCAAATCCAGTTGGTCCTACCCCTCACACCTTGCAGGAGCTGCAAGATACCACCCTTGGTTCGTTATTATCAGCTTTGATGCAGCACTGTGATCCTCCTCAGAGAAGATTTCCATTGGAGAAAGGTGTTTCACCCCCATGGTGGCCTACAGGACAGGAGGACTGGTGGCCACAATTGGGTTTGCAGAAGGATCAAGGTCCTCCACCTTACAAAAAGCCTCATGATCTGAAGAAGGCGTGGAAGGTTGGTGTCCTAACAGCGGTGATCAAGCACATTTCCCCTGATATTGCTAAAATCCGGAAGCTTGTGAGGCAGTCAAAGTGCTTGCAGGATAAGATGACAGCAAAAGAAAGTGCGACTTGGCTTGCTATCATCAATCAGGAGGAAGCTT</gDNA_template>
            <first_frame> T  S  P  T  L  S  S  L  F  L  T  Y  L  S  S  L  F  P  Y  S  L  L  K  N  G  Q  I  I  I  L  L  S  R  E  K  E  F  N  Q  I  F  S  N  I  I  N  S   : G  L  N  I  A  *  F  G  L  M  S  V  E  K  G  Q  D  N  L  *  K  N  W  V  L  A  A  S  S  V  *  I  S  *  R  L  V  I  S  F  L  E  E  F  V  L  V  K  M  M  M  F  E  E  M  G  F  C  G  D  L  D  F  F  P  A  P  L  K  E  V  E  V  A  A  P  Q  T  E  A  E  Q  V  V  D  D  D  Y  S  D  E  D  I  D  V  D  E  L  E  K  R  V  W  R  D  K  M  K  L  K  R  L  K  E  M  N  Q  G  M  E  D  V  D  S  V  K  R  R  Q  S  Q  E  Q  A  R  R  K  K  M  S  R  A  Q  D  G  I  L  K  Y  M  L  K  M  M  E  V  C  K  A  Q  G  F  V  Y  G  I  I  P  E  K  G  K  P  V  G  G  A  S  D  N  L  R  E  W  W  K  D  K  V  R  F  D  R  N  G  P  A  A  I  A  K  Y  Q  A  E  H  A  I  P  G  K  N  D  V  S  N  P  V  G  P  T  P  H  T  L  Q  E  L  Q  D  T  T  L  G  S  L  L  S  A  L  M  Q  H  C  D  P  P  Q  R  R  F  P  L  E  K  G  V  S  P  P  W  W  P  T  G  Q  E  D  W  W  P  Q  L  G  L  Q  K  D  Q  G  P  P  P  Y  K  K  P  H  D  L  K  K  A  W  K  V  G  V  L  T  A  V  I  K  H  I  S  P  D  I  A  K  I  R  K  L  V  R  Q  S  K  C  L  Q  D  K  M  T  A  K  E  S  A  T  W  L  A  I  I  N  Q  E  E  A  </first_frame>
            <second_frame>  R  P  P  P  F  L  L  Y  F  L  L  I  F  L  L  C  F  H  I  V  S  *  K  M  V  K  L  L  F  S  *  V  E  K  K  S  L  I  K  F  F  Q  I  S  *  I  Q  :  D  *  I  S  R  N  L  D  *  *  V  L  R  K  D  R  I  I  C  E  K  I  G  C  *  L  L  V  L  F  R  F  L  D  V  W  *  L  V  F  W  R  S  L  F  L  *  R  *  *  C  L  R  K  W  G  S  V  G  I  L  I  S  F  L  L  R  L  R  K  W  R  W  L  L  H  R  L  R  Q  S  R  W  W  M  M  I  I  V  M  R  I  L  M  W  M  S  *  R  R  E  C  G  G  T  R  *  S  *  K  G  *  K  K  *  I  R  G  W  K  M  L  I  L  S  N  D  A  S  H  R  S  R  Q  G  G  R  R  C  R  G  H  R  M  G  S  *  S  T  C  *  K  *  W  K  Y  V  K  L  R  V  L  F  M  G  S  F  R  R  K  A  S  R  L  V  G  H  L  I  I  L  G  S  G  G  R  I  K  *  D  L  I  A  M  A  L  P  L  *  P  N  T  R  L  S  M  L  S  Q  A  R  M  T  Y  Q  I  Q  L  V  L  P  L  T  P  C  R  S  C  K  I  P  P  L  V  R  Y  Y  Q  L  *  C  S  T  V  I  L  L  R  E  D  F  H  W  R  K  V  F  H  P  H  G  G  L  Q  D  R  R  T  G  G  H  N  W  V  C  R  R  I  K  V  L  H  L  T  K  S  L  M  I  *  R  R  R  G  R  L  V  S  *  Q  R  *  S  S  T  F  P  L  I  L  L  K  S  G  S  L  *  G  S  Q  S  A  C  R  I  R  *  Q  Q  K  K  V  R  L  G  L  L  S  S  I  R  R  K  L </second_frame>
            <third_frame>   V  P  H  P  F  F  S  I  S  Y  L  S  F  F  S  V  S  I  *  S  L  K  K  W  S  N  Y  Y  S  P  K  *  R  K  R  V  *  S  N  F  F  K  Y  H  K  F  R :   I  K  Y  R  V  I  W  I  D  E  C  *  E  R  T  G  *  S  V  K  K  L  G  V  S  C  *  F  C  L  D  F  L  T  F  G  D  *  F  F  G  G  V  C  S  C  E  D  D  D  V  *  G  N  G  V  L  W  G  S  *  F  L  S  C  S  A  *  G  S  G  G  G  C  S  T  D  *  G  R  A  G  G  G  *  *  L  *  *  *  G  Y  *  C  G  *  A  R  E  E  S  V  E  G  Q  D  E  A  E  K  A  E  R  N  E  S  G  D  G  R  C  *  F  C  Q  T  T  P  V  T  G  A  G  K  E  E  E  D  V  E  G  T  G  W  D  L  E  V  H  V  E  N  D  G  S  M  *  S  S  G  F  C  L  W  D  H  S  G  E  R  Q  A  G  W  W  G  I  *  *  S  *  G  V  V  E  G  *  S  E  I  *  S  Q  W  P  C  R  Y  S  Q  I  P  G  *  A  C  Y  P  R  Q  E  *  R  I  K  S  S  W  S  Y  P  S  H  L  A  G  A  A  R  Y  H  P  W  F  V  I  I  S  F  D  A  A  L  *  S  S  S  E  K  I  S  I  G  E  R  C  F  T  P  M  V  A  Y  R  T  G  G  L  V  A  T  I  G  F  A  E  G  S  R  S  S  T  L  Q  K  A  S  *  S  E  E  G  V  E  G  W  C  P  N  S  G  D  Q  A  H  F  P  *  Y  C  *  N  P  E  A  C  E  A  V  K  V  L  A  G  *  D  D  S  K  R  K  C  D  L  A  C  Y  H  Q  S  G  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="931" stop="2"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLVISFLEEFVLVKMMMFEEMGFCGDLDFFPAPLKEVEVAAPQTEAEQVVDDDYSDEDIDVDELEKRVWRDKMKLKRLKEMNQGMEDVDSVKRRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVGGASDNLREWWKDKVRFDRNGPAAIAKYQAEHAIPGKNDVSNPVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGQEDWWPQLGLQKDQGPPPYKKPHDLKKAWKVGVLTAVIKHISPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13944" PGL_stop="18939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14058" e_stop="14365"/>
            <exon e_start="15018" e_stop="15222"/>
            <exon e_start="15834" e_stop="15924"/>
            <exon e_start="16026" e_stop="16171"/>
            <exon e_start="16372" e_stop="16615"/>
            <exon e_start="16704" e_stop="16808"/>
            <exon e_start="16974" e_stop="17156"/>
            <exon e_start="17249" e_stop="17453"/>
            <exon e_start="18344" e_stop="18939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="0.948"/>
          <exon-intron don_prob="0.980" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="14058" e_stop="14365" e_length="308"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15018" e_stop="15222" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.987">
            <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15834" e_stop="15924" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16026" e_stop="16171" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.917">
            <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16372" e_stop="16615" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16704" e_stop="16808" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16974" e_stop="17156" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17249" e_stop="17453" e_length="205"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.928">
            <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="18344" e_stop="18939" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14058" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14058" stop="14365"/>
              <exon start="15018" stop="15220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14122" stop="14285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14128" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14131" stop="14365"/>
              <exon start="15018" stop="15207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14187" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16088" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16384" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16415" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16469" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16513" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16529" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16529" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16592" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16598" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16988" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17092" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17096" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17130" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17282" stop="17453"/>
              <exon start="18344" stop="18851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17296" stop="17453"/>
              <exon start="18344" stop="18917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17343" stop="17453"/>
              <exon start="18344" stop="18933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17343" stop="17453"/>
              <exon start="18344" stop="18926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17453"/>
              <exon start="18344" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17453"/>
              <exon start="18344" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18493" stop="18939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTACTATTATTTGTTCAACCTACTAATTTCAGCTCTTCATTTTTATTTTTTTTACAGATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG : GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG : AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA : GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA : GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG : GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG : ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG : GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG : GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAGCAGCATTAGTTC</gDNA_template>
            <first_frame> I  S  T  I  I  C  S  T  Y  *  F  Q  L  F  I  F  I  F  F  T  D  N  H  S  R  K  L  N  K  K  I  N  N  G  E  I  C  N  N  N  D  G  F  S  A  F  V  F  L  C  *  S  S  L  H  E  V  Q  G  P  K  T  A  I  E  C  *  N  Q  G  F  D  E  Q  N  E  P  *  R  E  N  R  S  D  D  P  D  *  E  T  C  S  F  T  S  D  H  E  E  I  L  H  W :   E  C  T  E  W  W  R  K  C  A  I  S  K  G  Y  C  C  *  L  G  E  D  G  K  *  D  S  K  G  F  T  F  N  T  P  W  Y  S  H  D  L  W  N  *  C  S  A  R  A  Q  Q  C  L  Q  S  N  N  F  S  T  Q  C  W  P  W  S  H  K  :  R  P  T  A  C  K  A  D  W  S  C  D  C  P  *  S  Q  S  H  R  N  P  L  H  F  C  T  V  H  R   : S  L  Q  R  S  K  M  G  S  V  L  *  K  L  *  *  R  S  *  N  C  S  G  N  D  *  D  H  S  W  F  T  R  R  C  S  G  *  L  P  *  G  C  S  V  C  R  R  K  :  D  K  S  S  S  L  C  *  A  L  C  G  R  W  W  H  Y  Q  G  H  *  *  K  *  H  C  Y  *  Y  E  W  A  T  *  H  P  H  A  C  I  F  *  F  N  F  K  G  S  F  H  N  N  G  L  L  L  K  L  E  W  K  E  D  A  C  K  P  *  P  N  H  W  L  S  Q  G  K  A  E  V  Q   : G  F  C  H  I  R  L  G  G  N  *  Q  D  Y  *  T  A  S  C  K  L  L  L  L  C  S  G  W  S  S  C  W  T  R  H   : D  Y  G  S  G  E  F  G  *  I  S  *  *  S  G  F  P  S  K  E  Q  Y  H  S  H  E  Q  D  R  *  C  S  Y  E  N  T  K  G  *  V  C  H  G  S  L  *  E  P  I  G  *  S  Q  L  S  K  P  T  R  K  P   : G  T  Q  R  V  S  K  R  S  S  E  E  I  T  C  T  I  E  E  W  *  S  Y  *  P  A  T  T  S  P  S  E  K  S  D  E  D  T  C  R  W  H  S  C  *  Q  F  G  L  P  V  W  R  L  D  Y  K  L  A  G  N  W  R  Q  *  S  Y  Y  R :   N  Y  N  F  K  C  C  E  K  D  S  P  S  I  Y  T  S  S  L  P  G  E  S  R  R  K  L  C  *  V  Q  P  L  F  L  C  H  C  C  C  G  *  D  T  L  C  G  D  V  W  R  *  C  K  A  Y  H  C  *  T  W  S  K  H  H  L  Q  C  L  W  G  C  E  M  C  G  S  C  G  L  W  A  S  S  C  D  *  T  V  S  C  K  H  R  R  P  C  G  C  L  A  S  G  K  *  R  P  R  C  C  *  C  P  V  W  *  L  W  I  H  R  Q  T  R  P  H  L  V  *  V  S  *  S  A  S  H  E  C  W  *  S  T  L  *  S  F  V  S  F  W  I  W  S  H  Y  *  A  C  E  E  L  K  S  L  H  L  E  F  Y  L  L  L  N  L  Y  I  F  F  C  L  M  D  I  *  Y  H  N  I  R  V  Y  K  K  E  A  A  L  V  </first_frame>
            <second_frame>  F  L  L  L  F  V  Q  P  T  N  F  S  S  S  F  L  F  F  L  Q  I  I  I  V  G  S  *  T  R  R  L  T  M  G  K  F  A  I  T  M  M  G  F  L  L  L  C  F  C  A  E  A  V  Y  M  K  Y  K  D  P  K  Q  P  L  N  V  R  I  R  D  L  M  N  R  M  S  L  E  E  K  I  G  Q  M  T  Q  I  E  R  H  V  A  S  P  Q  I  M  R  K  Y  F  I   : G  S  V  L  S  G  G  G  S  A  P  F  P  K  A  T  A  A  D  W  V  K  M  V  N  E  I  Q  K  G  S  L  S  T  R  L  G  I  P  M  I  Y  G  I  D  A  V  H  G  H  N  N  V  Y  K  A  T  I  F  P  H  N  V  G  L  G  V  T  R :   D  P  Q  L  V  K  R  I  G  A  A  T  A  L  E  V  R  A  T  G  I  P  Y  T  F  A  P  C  I  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  S  E  D  H  R  I  V  Q  A  M  T  E  I  I  P  G  L  Q  G  D  A  P  A  N  S  R  K  G  V  P  F  V  G  G  K :   T  K  V  A  A  C  A  K  H  F  V  G  D  G  G  T  T  K  G  I  D  E  N  N  T  V  I  D  M  N  G  L  L  N  I  H  M  P  A  Y  F  D  S  I  L  K  G  V  S  T  I  M  V  S  Y  S  S  W  N  G  K  R  M  H  A  N  R  D  L  I  T  G  F  L  K  G  K  L  K  F  R  :  G  F  V  I  S  D  W  E  A  I  D  K  I  T  E  P  P  R  A  N  Y  S  Y  S  V  Q  A  G  V  L  A  G  L  D  M  :  I  M  G  Q  E  N  L  V  E  F  L  D  D  L  A  F  Q  V  R  N  N  I  I  P  M  S  R  I  D  D  A  V  M  R  I  L  R  V  K  F  V  M  G  L  F  E  N  P  L  A  D  L  S  L  A  N  Q  L  G  S  Q  :  E  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  V  T  N  Q  P  L  L  P  L  P  K  K  V  T  K  I  L  V  A  G  I  H  A  D  N  L  G  Y  Q  C  G  G  W  T  I  S  W  Q  G  I  G  G  N  D  L  I  T   : G  T  T  I  L  N  A  V  K  K  T  V  H  P  S  T  Q  V  V  Y  Q  E  N  P  D  V  N  F  V  K  S  N  H  F  S  Y  A  I  V  V  V  G  E  T  P  Y  A  E  M  F  G  D  S  A  K  L  T  I  A  E  P  G  P  S  I  I  S  S  V  C  G  V  V  K  C  V  V  V  V  V  S  G  R  P  V  V  I  E  P  Y  L  A  N  I  D  A  L  V  A  A  W  L  P  G  S  E  G  Q  G  V  A  D  V  L  F  G  D  Y  G  F  T  G  K  L  A  R  T  W  F  K  S  V  D  Q  L  P  M  N  V  G  D  R  H  Y  D  P  L  F  P  F  G  F  G  L  T  T  K  P  V  K  S  *  N  L  F  I  W  S  S  T  C  C  S  I  F  I  Y  F  F  V  *  W  I  F  N  I  I  I  *  E  F  T  R  K  K  Q  H  *  F </second_frame>
            <third_frame>   F  Y  Y  Y  L  F  N  L  L  I  S  A  L  H  F  Y  F  F  Y  R  *  S  *  *  E  A  K  Q  E  D  *  Q  W  G  N  L  Q  *  Q  *  W  V  F  C  F  C  V  S  V  L  K  Q  F  T  *  S  T  R  T  Q  N  S  H  *  M  L  E  S  G  I  *  *  T  E  *  A  L  K  R  K  *  V  R  *  P  R  L  R  D  M  *  L  H  L  R  S  *  G  N  T  S  L  :  G  V  Y  *  V  V  E  E  V  R  H  F  Q  R  L  L  L  L  T  G  *  R  W  *  M  R  F  K  R  V  H  F  Q  H  A  L  V  F  P  *  F  M  E  L  M  Q  C  T  G  T  T  M  S  T  K  Q  Q  F  F  H  T  M  L  A  L  E  S  Q   : E  T  H  S  L  *  S  G  L  E  L  R  L  P  L  K  S  E  P  Q  E  S  L  T  L  L  H  R  A  S  Q :   S  A  E  I  Q  D  G  V  G  A  M  K  A  I  V  K  I  I  E  L  F  R  Q  *  L  R  S  F  L  V  Y  K  E  M  L  R  L  T  P  V  R  V  F  R  L  S  E  E   : R  Q  K  *  Q  P  V  L  S  T  L  W  E  M  V  A  L  P  R  A  L  M  K  I  T  L  L  L  I  *  M  G  Y  L  T  S  T  C  L  H  I  L  I  Q  F  *  R  E  F  P  Q  *  W  S  L  T  Q  A  G  M  E  R  G  C  M  Q  T  V  T  *  S  L  A  F  S  R  E  S  *  S  S  G :   V  L  S  Y  Q  I  G  R  Q  L  T  R  L  L  N  R  L  V  Q  I  T  L  T  L  F  R  L  E  F  L  L  D  S  T  * :   L  W  V  R  R  I  W  L  N  F  L  M  I  W  L  S  K  *  G  T  I  S  F  P  *  A  G  *  M  M  Q  L  *  E  Y  *  G  L  S  L  S  W  V  S  L  R  T  H  W  L  I  S  A  *  Q  T  N  *  E  A  R :   N  T  E  S  *  Q  E  K  Q  *  G  N  H  L  Y  Y  *  R  M  V  K  L  L  T  S  H  Y  F  P  F  R  K  K  *  R  R  Y  L  S  L  A  F  M  L  T  I  W  V  T  S  V  E  A  G  L  *  V  G  R  E  L  E  A  M  I  L  L  Q  :  E  L  Q  F  *  M  L  *  K  R  Q  S  I  H  L  H  K  *  S  T  R  R  I  Q  T  *  T  L  L  S  P  T  T  F  P  M  P  L  L  L  W  V  R  H  P  M  R  R  C  L  A  I  V  Q  S  L  P  L  L  N  L  V  Q  A  S  S  P  V  S  V  G  L  *  N  V  W  *  L  W  S  L  G  V  Q  L  *  L  N  R  I  L  Q  T  *  T  P  L  W  L  L  G  F  R  E  V  K  A  K  V  L  L  M  S  C  L  V  T  M  D  S  Q  A  N  S  P  A  L  G  L  S  Q  L  I  S  F  P  *  M  L  V  I  D  I  M  I  L  C  F  L  L  D  L  V  S  L  L  S  L  *  R  A  K  I  S  S  S  G  V  L  L  A  A  Q  S  L  Y  I  F  L  F  N  G  Y  L  I  S  *  Y  K  S  L  Q  E  R  S  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14140" stop="14365"/>
                    <exon start="15018" stop="15222"/>
                    <exon start="15834" stop="15924"/>
                    <exon start="16026" stop="16171"/>
                    <exon start="16372" stop="16615"/>
                    <exon start="16704" stop="16808"/>
                    <exon start="16974" stop="17156"/>
                    <exon start="17249" stop="17453"/>
                    <exon start="18344" stop="18828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1887</number_coding_nucleotides>
                  <number_encoded_amino_acids>629</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRLTMGKFAITMMGFLLLCFCAEAVYMKYKDPKQPLNVRIRDLMNRMSLEEKIGQMTQIERHVASPQIMRKYFIGSVLSGGGSAPFPKATAADWVKMVNEIQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPQLVKRIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHRIVQAMTEIIPGLQGDAPANSRKGVPFVGGKTKVAACAKHFVGDGGTTKGIDENNTVIDMNGLLNIHMPAYFDSILKGVSTIMVSYSSWNGKRMHANRDLITGFLKGKLKFRGFVISDWEAIDKITEPPRANYSYSVQAGVLAGLDMIMGQENLVEFLDDLAFQVRNNIIPMSRIDDAVMRILRVKFVMGLFENPLADLSLANQLGSQEHRELAREAVRKSLVLLKNGKVTNQPLLPLPKKVTKILVAGIHADNLGYQCGGWTISWQGIGGNDLITGTTILNAVKKTVHPSTQVVYQENPDVNFVKSNHFSYAIVVVGETPYAEMFGDSAKLTIAEPGPSIISSVCGVVKCVVVVVSGRPVVIEPYLANIDALVAAWLPGSEGQGVADVLFGDYGFTGKLARTWFKSVDQLPMNVGDRHYDPLFPFGFGLTTKPVKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14035" e_stop="14035"/>
            <exon e_start="14119" e_stop="14365"/>
            <exon e_start="15018" e_stop="15222"/>
            <exon e_start="15834" e_stop="15924"/>
            <exon e_start="16026" e_stop="16171"/>
            <exon e_start="16372" e_stop="16615"/>
            <exon e_start="16704" e_stop="16808"/>
            <exon e_start="16974" e_stop="17156"/>
            <exon e_start="17249" e_stop="17453"/>
            <exon e_start="18344" e_stop="18939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.248" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14035" e_stop="14035" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.248" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14036" i_stop="14118" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14119" e_stop="14365" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15018" e_stop="15222" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.987">
            <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15834" e_stop="15924" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16026" e_stop="16171" e_length="146"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.917">
            <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16372" e_stop="16615" e_length="244"/>
          </exon>
          <intron i_serial="6" don_prob="0.942" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16704" e_stop="16808" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16974" e_stop="17156" e_length="183"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17249" e_stop="17453" e_length="205"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.928">
            <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="18344" e_stop="18939" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14035" stop="14035"/>
              <exon start="14119" stop="14365"/>
              <exon start="15018" stop="15153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14122" stop="14285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14128" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14131" stop="14365"/>
              <exon start="15018" stop="15207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14187" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16088" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16384" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16415" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16469" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16513" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16529" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16529" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16592" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16598" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16988" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17092" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17096" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17130" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17282" stop="17453"/>
              <exon start="18344" stop="18851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17296" stop="17453"/>
              <exon start="18344" stop="18917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17343" stop="17453"/>
              <exon start="18344" stop="18933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17343" stop="17453"/>
              <exon start="18344" stop="18926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17453"/>
              <exon start="18344" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17453"/>
              <exon start="18344" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18493" stop="18939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>A : ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG : GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG : AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA : GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA : GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG : GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG : ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG : GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG : GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAGCAGCATTAGTTC</gDNA_template>
            <first_frame>  : N  N  H  S  R  K  L  N  K  K  I  N  N  G  E  I  C  N  N  N  D  G  F  S  A  F  V  F  L  C  *  S  S  L  H  E  V  Q  G  P  K  T  A  I  E  C  *  N  Q  G  F  D  E  Q  N  E  P  *  R  E  N  R  S  D  D  P  D  *  E  T  C  S  F  T  S  D  H  E  E  I  L  H  W :   E  C  T  E  W  W  R  K  C  A  I  S  K  G  Y  C  C  *  L  G  E  D  G  K  *  D  S  K  G  F  T  F  N  T  P  W  Y  S  H  D  L  W  N  *  C  S  A  R  A  Q  Q  C  L  Q  S  N  N  F  S  T  Q  C  W  P  W  S  H  K  :  R  P  T  A  C  K  A  D  W  S  C  D  C  P  *  S  Q  S  H  R  N  P  L  H  F  C  T  V  H  R   : S  L  Q  R  S  K  M  G  S  V  L  *  K  L  *  *  R  S  *  N  C  S  G  N  D  *  D  H  S  W  F  T  R  R  C  S  G  *  L  P  *  G  C  S  V  C  R  R  K  :  D  K  S  S  S  L  C  *  A  L  C  G  R  W  W  H  Y  Q  G  H  *  *  K  *  H  C  Y  *  Y  E  W  A  T  *  H  P  H  A  C  I  F  *  F  N  F  K  G  S  F  H  N  N  G  L  L  L  K  L  E  W  K  E  D  A  C  K  P  *  P  N  H  W  L  S  Q  G  K  A  E  V  Q   : G  F  C  H  I  R  L  G  G  N  *  Q  D  Y  *  T  A  S  C  K  L  L  L  L  C  S  G  W  S  S  C  W  T  R  H   : D  Y  G  S  G  E  F  G  *  I  S  *  *  S  G  F  P  S  K  E  Q  Y  H  S  H  E  Q  D  R  *  C  S  Y  E  N  T  K  G  *  V  C  H  G  S  L  *  E  P  I  G  *  S  Q  L  S  K  P  T  R  K  P   : G  T  Q  R  V  S  K  R  S  S  E  E  I  T  C  T  I  E  E  W  *  S  Y  *  P  A  T  T  S  P  S  E  K  S  D  E  D  T  C  R  W  H  S  C  *  Q  F  G  L  P  V  W  R  L  D  Y  K  L  A  G  N  W  R  Q  *  S  Y  Y  R :   N  Y  N  F  K  C  C  E  K  D  S  P  S  I  Y  T  S  S  L  P  G  E  S  R  R  K  L  C  *  V  Q  P  L  F  L  C  H  C  C  C  G  *  D  T  L  C  G  D  V  W  R  *  C  K  A  Y  H  C  *  T  W  S  K  H  H  L  Q  C  L  W  G  C  E  M  C  G  S  C  G  L  W  A  S  S  C  D  *  T  V  S  C  K  H  R  R  P  C  G  C  L  A  S  G  K  *  R  P  R  C  C  *  C  P  V  W  *  L  W  I  H  R  Q  T  R  P  H  L  V  *  V  S  *  S  A  S  H  E  C  W  *  S  T  L  *  S  F  V  S  F  W  I  W  S  H  Y  *  A  C  E  E  L  K  S  L  H  L  E  F  Y  L  L  L  N  L  Y  I  F  F  C  L  M  D  I  *  Y  H  N  I  R  V  Y  K  K  E  A  A  L  V  </first_frame>
            <second_frame>  :  I  I  I  V  G  S  *  T  R  R  L  T  M  G  K  F  A  I  T  M  M  G  F  L  L  L  C  F  C  A  E  A  V  Y  M  K  Y  K  D  P  K  Q  P  L  N  V  R  I  R  D  L  M  N  R  M  S  L  E  E  K  I  G  Q  M  T  Q  I  E  R  H  V  A  S  P  Q  I  M  R  K  Y  F  I   : G  S  V  L  S  G  G  G  S  A  P  F  P  K  A  T  A  A  D  W  V  K  M  V  N  E  I  Q  K  G  S  L  S  T  R  L  G  I  P  M  I  Y  G  I  D  A  V  H  G  H  N  N  V  Y  K  A  T  I  F  P  H  N  V  G  L  G  V  T  R :   D  P  Q  L  V  K  R  I  G  A  A  T  A  L  E  V  R  A  T  G  I  P  Y  T  F  A  P  C  I  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  S  E  D  H  R  I  V  Q  A  M  T  E  I  I  P  G  L  Q  G  D  A  P  A  N  S  R  K  G  V  P  F  V  G  G  K :   T  K  V  A  A  C  A  K  H  F  V  G  D  G  G  T  T  K  G  I  D  E  N  N  T  V  I  D  M  N  G  L  L  N  I  H  M  P  A  Y  F  D  S  I  L  K  G  V  S  T  I  M  V  S  Y  S  S  W  N  G  K  R  M  H  A  N  R  D  L  I  T  G  F  L  K  G  K  L  K  F  R  :  G  F  V  I  S  D  W  E  A  I  D  K  I  T  E  P  P  R  A  N  Y  S  Y  S  V  Q  A  G  V  L  A  G  L  D  M  :  I  M  G  Q  E  N  L  V  E  F  L  D  D  L  A  F  Q  V  R  N  N  I  I  P  M  S  R  I  D  D  A  V  M  R  I  L  R  V  K  F  V  M  G  L  F  E  N  P  L  A  D  L  S  L  A  N  Q  L  G  S  Q  :  E  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  V  T  N  Q  P  L  L  P  L  P  K  K  V  T  K  I  L  V  A  G  I  H  A  D  N  L  G  Y  Q  C  G  G  W  T  I  S  W  Q  G  I  G  G  N  D  L  I  T   : G  T  T  I  L  N  A  V  K  K  T  V  H  P  S  T  Q  V  V  Y  Q  E  N  P  D  V  N  F  V  K  S  N  H  F  S  Y  A  I  V  V  V  G  E  T  P  Y  A  E  M  F  G  D  S  A  K  L  T  I  A  E  P  G  P  S  I  I  S  S  V  C  G  V  V  K  C  V  V  V  V  V  S  G  R  P  V  V  I  E  P  Y  L  A  N  I  D  A  L  V  A  A  W  L  P  G  S  E  G  Q  G  V  A  D  V  L  F  G  D  Y  G  F  T  G  K  L  A  R  T  W  F  K  S  V  D  Q  L  P  M  N  V  G  D  R  H  Y  D  P  L  F  P  F  G  F  G  L  T  T  K  P  V  K  S  *  N  L  F  I  W  S  S  T  C  C  S  I  F  I  Y  F  F  V  *  W  I  F  N  I  I  I  *  E  F  T  R  K  K  Q  H  *  F </second_frame>
            <third_frame>  :   *  S  *  *  E  A  K  Q  E  D  *  Q  W  G  N  L  Q  *  Q  *  W  V  F  C  F  C  V  S  V  L  K  Q  F  T  *  S  T  R  T  Q  N  S  H  *  M  L  E  S  G  I  *  *  T  E  *  A  L  K  R  K  *  V  R  *  P  R  L  R  D  M  *  L  H  L  R  S  *  G  N  T  S  L  :  G  V  Y  *  V  V  E  E  V  R  H  F  Q  R  L  L  L  L  T  G  *  R  W  *  M  R  F  K  R  V  H  F  Q  H  A  L  V  F  P  *  F  M  E  L  M  Q  C  T  G  T  T  M  S  T  K  Q  Q  F  F  H  T  M  L  A  L  E  S  Q   : E  T  H  S  L  *  S  G  L  E  L  R  L  P  L  K  S  E  P  Q  E  S  L  T  L  L  H  R  A  S  Q :   S  A  E  I  Q  D  G  V  G  A  M  K  A  I  V  K  I  I  E  L  F  R  Q  *  L  R  S  F  L  V  Y  K  E  M  L  R  L  T  P  V  R  V  F  R  L  S  E  E   : R  Q  K  *  Q  P  V  L  S  T  L  W  E  M  V  A  L  P  R  A  L  M  K  I  T  L  L  L  I  *  M  G  Y  L  T  S  T  C  L  H  I  L  I  Q  F  *  R  E  F  P  Q  *  W  S  L  T  Q  A  G  M  E  R  G  C  M  Q  T  V  T  *  S  L  A  F  S  R  E  S  *  S  S  G :   V  L  S  Y  Q  I  G  R  Q  L  T  R  L  L  N  R  L  V  Q  I  T  L  T  L  F  R  L  E  F  L  L  D  S  T  * :   L  W  V  R  R  I  W  L  N  F  L  M  I  W  L  S  K  *  G  T  I  S  F  P  *  A  G  *  M  M  Q  L  *  E  Y  *  G  L  S  L  S  W  V  S  L  R  T  H  W  L  I  S  A  *  Q  T  N  *  E  A  R :   N  T  E  S  *  Q  E  K  Q  *  G  N  H  L  Y  Y  *  R  M  V  K  L  L  T  S  H  Y  F  P  F  R  K  K  *  R  R  Y  L  S  L  A  F  M  L  T  I  W  V  T  S  V  E  A  G  L  *  V  G  R  E  L  E  A  M  I  L  L  Q  :  E  L  Q  F  *  M  L  *  K  R  Q  S  I  H  L  H  K  *  S  T  R  R  I  Q  T  *  T  L  L  S  P  T  T  F  P  M  P  L  L  L  W  V  R  H  P  M  R  R  C  L  A  I  V  Q  S  L  P  L  L  N  L  V  Q  A  S  S  P  V  S  V  G  L  *  N  V  W  *  L  W  S  L  G  V  Q  L  *  L  N  R  I  L  Q  T  *  T  P  L  W  L  L  G  F  R  E  V  K  A  K  V  L  L  M  S  C  L  V  T  M  D  S  Q  A  N  S  P  A  L  G  L  S  Q  L  I  S  F  P  *  M  L  V  I  D  I  M  I  L  C  F  L  L  D  L  V  S  L  L  S  L  *  R  A  K  I  S  S  S  G  V  L  L  A  A  Q  S  L  Y  I  F  L  F  N  G  Y  L  I  S  *  Y  K  S  L  Q  E  R  S  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14140" stop="14365"/>
                    <exon start="15018" stop="15222"/>
                    <exon start="15834" stop="15924"/>
                    <exon start="16026" stop="16171"/>
                    <exon start="16372" stop="16615"/>
                    <exon start="16704" stop="16808"/>
                    <exon start="16974" stop="17156"/>
                    <exon start="17249" stop="17453"/>
                    <exon start="18344" stop="18828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1887</number_coding_nucleotides>
                  <number_encoded_amino_acids>629</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRLTMGKFAITMMGFLLLCFCAEAVYMKYKDPKQPLNVRIRDLMNRMSLEEKIGQMTQIERHVASPQIMRKYFIGSVLSGGGSAPFPKATAADWVKMVNEIQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPQLVKRIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHRIVQAMTEIIPGLQGDAPANSRKGVPFVGGKTKVAACAKHFVGDGGTTKGIDENNTVIDMNGLLNIHMPAYFDSILKGVSTIMVSYSSWNGKRMHANRDLITGFLKGKLKFRGFVISDWEAIDKITEPPRANYSYSVQAGVLAGLDMIMGQENLVEFLDDLAFQVRNNIIPMSRIDDAVMRILRVKFVMGLFENPLADLSLANQLGSQEHRELAREAVRKSLVLLKNGKVTNQPLLPLPKKVTKILVAGIHADNLGYQCGGWTISWQGIGGNDLITGTTILNAVKKTVHPSTQVVYQENPDVNFVKSNHFSYAIVVVGETPYAEMFGDSAKLTIAEPGPSIISSVCGVVKCVVVVVSGRPVVIEPYLANIDALVAAWLPGSEGQGVADVLFGDYGFTGKLARTWFKSVDQLPMNVGDRHYDPLFPFGFGLTTKPVKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13944" e_stop="13977"/>
            <exon e_start="14119" e_stop="14365"/>
            <exon e_start="15018" e_stop="15222"/>
            <exon e_start="15834" e_stop="15924"/>
            <exon e_start="16026" e_stop="16171"/>
            <exon e_start="16372" e_stop="16615"/>
            <exon e_start="16704" e_stop="16808"/>
            <exon e_start="16974" e_stop="17156"/>
            <exon e_start="17249" e_stop="17453"/>
            <exon e_start="18344" e_stop="18939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.196" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="13944" e_stop="13977" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.196" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13978" i_stop="14118" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14119" e_stop="14365" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15018" e_stop="15222" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.987">
            <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15834" e_stop="15924" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16026" e_stop="16171" e_length="146"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.917">
            <gDNA_intron_boundary i_start="16172" i_stop="16371" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16372" e_stop="16615" e_length="244"/>
          </exon>
          <intron i_serial="6" don_prob="0.942" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16616" i_stop="16703" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16704" e_stop="16808" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16809" i_stop="16973" i_length="165"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16974" e_stop="17156" e_length="183"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17157" i_stop="17248" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17249" e_stop="17453" e_length="205"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.928">
            <gDNA_intron_boundary i_start="17454" i_stop="18343" i_length="890"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="18344" e_stop="18939" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13944" stop="13977"/>
              <exon start="14119" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14122" stop="14285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14128" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14131" stop="14365"/>
              <exon start="15018" stop="15207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14187" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16088" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16171"/>
              <exon start="16372" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16384" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16415" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16469" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16513" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16529" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16529" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16592" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16598" stop="16615"/>
              <exon start="16704" stop="16808"/>
              <exon start="16974" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16988" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17092" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17096" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17130" stop="17156"/>
              <exon start="17249" stop="17453"/>
              <exon start="18344" stop="18514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17282" stop="17453"/>
              <exon start="18344" stop="18851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17296" stop="17453"/>
              <exon start="18344" stop="18917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17343" stop="17453"/>
              <exon start="18344" stop="18933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17343" stop="17453"/>
              <exon start="18344" stop="18926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17453"/>
              <exon start="18344" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17453"/>
              <exon start="18344" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18493" stop="18939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATTTGTATTGATTTGAGCTAGCAGTAGCACA : ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG : GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG : AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA : GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAA : GACAAAAGTAGCAGCCTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGCATTGATGAAAATAACACTGTTATTGATATGAATGGGCTACTTAACATCCACATGCCTGCATATTTTGATTCAATTTTAAAGGGAGTTTCCACAATAATGGTCTCTTACTCAAGCTGGAATGGAAAGAGGATGCATGCAAACCGTGACCTAATCACTGGCTTTCTCAAGGGAAAGCTGAAGTTCAGG : GGTTTTGTCATATCAGATTGGGAGGCAATTGACAAGATTACTGAACCGCCTCGTGCAAATTACTCTTACTCTGTTCAGGCTGGAGTTCTTGCTGGACTCGACATG : ATTATGGGTCAGGAGAATTTGGTTGAATTTCTTGATGATCTGGCTTTCCAAGTAAGGAACAATATCATTCCCATGAGCAGGATAGATGATGCAGTTATGAGAATACTAAGGGTTAAGTTTGTCATGGGTCTCTTTGAGAACCCATTGGCTGATCTCAGCTTAGCAAACCAACTAGGAAGCCAG : GAACACAGAGAGTTAGCAAGAGAAGCAGTGAGGAAATCACTTGTACTATTGAAGAATGGTAAAGTTACTAACCAGCCACTACTTCCCCTTCCGAAAAAAGTGACGAAGATACTTGTCGCTGGCATTCATGCTGACAATTTGGGTTACCAGTGTGGAGGCTGGACTATAAGTTGGCAGGGAATTGGAGGCAATGATCTTATTACAG : GAACTACAATTTTAAATGCTGTGAAAAAGACAGTCCATCCATCTACACAAGTAGTCTACCAGGAGAATCCAGACGTAAACTTTGTTAAGTCCAACCACTTTTCCTATGCCATTGTTGTTGTGGGTGAGACACCCTATGCGGAGATGTTTGGCGATAGTGCAAAGCTTACCATTGCTGAACCTGGTCCAAGCATCATCTCCAGTGTCTGTGGGGTTGTGAAATGTGTGGTAGTTGTGGTCTCTGGGCGTCCAGTTGTGATTGAACCGTATCTTGCAAACATAGACGCCCTTGTGGCTGCTTGGCTTCCGGGAAGTGAAGGCCAAGGTGTTGCTGATGTCCTGTTTGGTGACTATGGATTCACAGGCAAACTCGCCCGCACTTGGTTTAAGTCAGTTGATCAGCTTCCCATGAATGTTGGTGATCGACATTATGATCCTTTGTTTCCTTTTGGATTTGGTCTCACTACTAAGCCTGTGAAGAGCTAAAATCTCTTCATCTGGAGTTCTACTTGCTGCTCAATCTTTATATATTTTTTTGTTTAATGGATATTTAATATCATAATATAAGAGTTTACAAGAAAGAAGCAGCATTAGTTC</gDNA_template>
            <first_frame> Y  I  C  I  D  L  S  *  Q  *  H   : N  N  H  S  R  K  L  N  K  K  I  N  N  G  E  I  C  N  N  N  D  G  F  S  A  F  V  F  L  C  *  S  S  L  H  E  V  Q  G  P  K  T  A  I  E  C  *  N  Q  G  F  D  E  Q  N  E  P  *  R  E  N  R  S  D  D  P  D  *  E  T  C  S  F  T  S  D  H  E  E  I  L  H  W :   E  C  T  E  W  W  R  K  C  A  I  S  K  G  Y  C  C  *  L  G  E  D  G  K  *  D  S  K  G  F  T  F  N  T  P  W  Y  S  H  D  L  W  N  *  C  S  A  R  A  Q  Q  C  L  Q  S  N  N  F  S  T  Q  C  W  P  W  S  H  K  :  R  P  T  A  C  K  A  D  W  S  C  D  C  P  *  S  Q  S  H  R  N  P  L  H  F  C  T  V  H  R   : S  L  Q  R  S  K  M  G  S  V  L  *  K  L  *  *  R  S  *  N  C  S  G  N  D  *  D  H  S  W  F  T  R  R  C  S  G  *  L  P  *  G  C  S  V  C  R  R  K  :  D  K  S  S  S  L  C  *  A  L  C  G  R  W  W  H  Y  Q  G  H  *  *  K  *  H  C  Y  *  Y  E  W  A  T  *  H  P  H  A  C  I  F  *  F  N  F  K  G  S  F  H  N  N  G  L  L  L  K  L  E  W  K  E  D  A  C  K  P  *  P  N  H  W  L  S  Q  G  K  A  E  V  Q   : G  F  C  H  I  R  L  G  G  N  *  Q  D  Y  *  T  A  S  C  K  L  L  L  L  C  S  G  W  S  S  C  W  T  R  H   : D  Y  G  S  G  E  F  G  *  I  S  *  *  S  G  F  P  S  K  E  Q  Y  H  S  H  E  Q  D  R  *  C  S  Y  E  N  T  K  G  *  V  C  H  G  S  L  *  E  P  I  G  *  S  Q  L  S  K  P  T  R  K  P   : G  T  Q  R  V  S  K  R  S  S  E  E  I  T  C  T  I  E  E  W  *  S  Y  *  P  A  T  T  S  P  S  E  K  S  D  E  D  T  C  R  W  H  S  C  *  Q  F  G  L  P  V  W  R  L  D  Y  K  L  A  G  N  W  R  Q  *  S  Y  Y  R :   N  Y  N  F  K  C  C  E  K  D  S  P  S  I  Y  T  S  S  L  P  G  E  S  R  R  K  L  C  *  V  Q  P  L  F  L  C  H  C  C  C  G  *  D  T  L  C  G  D  V  W  R  *  C  K  A  Y  H  C  *  T  W  S  K  H  H  L  Q  C  L  W  G  C  E  M  C  G  S  C  G  L  W  A  S  S  C  D  *  T  V  S  C  K  H  R  R  P  C  G  C  L  A  S  G  K  *  R  P  R  C  C  *  C  P  V  W  *  L  W  I  H  R  Q  T  R  P  H  L  V  *  V  S  *  S  A  S  H  E  C  W  *  S  T  L  *  S  F  V  S  F  W  I  W  S  H  Y  *  A  C  E  E  L  K  S  L  H  L  E  F  Y  L  L  L  N  L  Y  I  F  F  C  L  M  D  I  *  Y  H  N  I  R  V  Y  K  K  E  A  A  L  V  </first_frame>
            <second_frame>  T  F  V  L  I  *  A  S  S  S  T  :  I  I  I  V  G  S  *  T  R  R  L  T  M  G  K  F  A  I  T  M  M  G  F  L  L  L  C  F  C  A  E  A  V  Y  M  K  Y  K  D  P  K  Q  P  L  N  V  R  I  R  D  L  M  N  R  M  S  L  E  E  K  I  G  Q  M  T  Q  I  E  R  H  V  A  S  P  Q  I  M  R  K  Y  F  I   : G  S  V  L  S  G  G  G  S  A  P  F  P  K  A  T  A  A  D  W  V  K  M  V  N  E  I  Q  K  G  S  L  S  T  R  L  G  I  P  M  I  Y  G  I  D  A  V  H  G  H  N  N  V  Y  K  A  T  I  F  P  H  N  V  G  L  G  V  T  R :   D  P  Q  L  V  K  R  I  G  A  A  T  A  L  E  V  R  A  T  G  I  P  Y  T  F  A  P  C  I  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  S  E  D  H  R  I  V  Q  A  M  T  E  I  I  P  G  L  Q  G  D  A  P  A  N  S  R  K  G  V  P  F  V  G  G  K :   T  K  V  A  A  C  A  K  H  F  V  G  D  G  G  T  T  K  G  I  D  E  N  N  T  V  I  D  M  N  G  L  L  N  I  H  M  P  A  Y  F  D  S  I  L  K  G  V  S  T  I  M  V  S  Y  S  S  W  N  G  K  R  M  H  A  N  R  D  L  I  T  G  F  L  K  G  K  L  K  F  R  :  G  F  V  I  S  D  W  E  A  I  D  K  I  T  E  P  P  R  A  N  Y  S  Y  S  V  Q  A  G  V  L  A  G  L  D  M  :  I  M  G  Q  E  N  L  V  E  F  L  D  D  L  A  F  Q  V  R  N  N  I  I  P  M  S  R  I  D  D  A  V  M  R  I  L  R  V  K  F  V  M  G  L  F  E  N  P  L  A  D  L  S  L  A  N  Q  L  G  S  Q  :  E  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  V  T  N  Q  P  L  L  P  L  P  K  K  V  T  K  I  L  V  A  G  I  H  A  D  N  L  G  Y  Q  C  G  G  W  T  I  S  W  Q  G  I  G  G  N  D  L  I  T   : G  T  T  I  L  N  A  V  K  K  T  V  H  P  S  T  Q  V  V  Y  Q  E  N  P  D  V  N  F  V  K  S  N  H  F  S  Y  A  I  V  V  V  G  E  T  P  Y  A  E  M  F  G  D  S  A  K  L  T  I  A  E  P  G  P  S  I  I  S  S  V  C  G  V  V  K  C  V  V  V  V  V  S  G  R  P  V  V  I  E  P  Y  L  A  N  I  D  A  L  V  A  A  W  L  P  G  S  E  G  Q  G  V  A  D  V  L  F  G  D  Y  G  F  T  G  K  L  A  R  T  W  F  K  S  V  D  Q  L  P  M  N  V  G  D  R  H  Y  D  P  L  F  P  F  G  F  G  L  T  T  K  P  V  K  S  *  N  L  F  I  W  S  S  T  C  C  S  I  F  I  Y  F  F  V  *  W  I  F  N  I  I  I  *  E  F  T  R  K  K  Q  H  *  F </second_frame>
            <third_frame>   H  L  Y  *  F  E  L  A  V  A  Q :   *  S  *  *  E  A  K  Q  E  D  *  Q  W  G  N  L  Q  *  Q  *  W  V  F  C  F  C  V  S  V  L  K  Q  F  T  *  S  T  R  T  Q  N  S  H  *  M  L  E  S  G  I  *  *  T  E  *  A  L  K  R  K  *  V  R  *  P  R  L  R  D  M  *  L  H  L  R  S  *  G  N  T  S  L  :  G  V  Y  *  V  V  E  E  V  R  H  F  Q  R  L  L  L  L  T  G  *  R  W  *  M  R  F  K  R  V  H  F  Q  H  A  L  V  F  P  *  F  M  E  L  M  Q  C  T  G  T  T  M  S  T  K  Q  Q  F  F  H  T  M  L  A  L  E  S  Q   : E  T  H  S  L  *  S  G  L  E  L  R  L  P  L  K  S  E  P  Q  E  S  L  T  L  L  H  R  A  S  Q :   S  A  E  I  Q  D  G  V  G  A  M  K  A  I  V  K  I  I  E  L  F  R  Q  *  L  R  S  F  L  V  Y  K  E  M  L  R  L  T  P  V  R  V  F  R  L  S  E  E   : R  Q  K  *  Q  P  V  L  S  T  L  W  E  M  V  A  L  P  R  A  L  M  K  I  T  L  L  L  I  *  M  G  Y  L  T  S  T  C  L  H  I  L  I  Q  F  *  R  E  F  P  Q  *  W  S  L  T  Q  A  G  M  E  R  G  C  M  Q  T  V  T  *  S  L  A  F  S  R  E  S  *  S  S  G :   V  L  S  Y  Q  I  G  R  Q  L  T  R  L  L  N  R  L  V  Q  I  T  L  T  L  F  R  L  E  F  L  L  D  S  T  * :   L  W  V  R  R  I  W  L  N  F  L  M  I  W  L  S  K  *  G  T  I  S  F  P  *  A  G  *  M  M  Q  L  *  E  Y  *  G  L  S  L  S  W  V  S  L  R  T  H  W  L  I  S  A  *  Q  T  N  *  E  A  R :   N  T  E  S  *  Q  E  K  Q  *  G  N  H  L  Y  Y  *  R  M  V  K  L  L  T  S  H  Y  F  P  F  R  K  K  *  R  R  Y  L  S  L  A  F  M  L  T  I  W  V  T  S  V  E  A  G  L  *  V  G  R  E  L  E  A  M  I  L  L  Q  :  E  L  Q  F  *  M  L  *  K  R  Q  S  I  H  L  H  K  *  S  T  R  R  I  Q  T  *  T  L  L  S  P  T  T  F  P  M  P  L  L  L  W  V  R  H  P  M  R  R  C  L  A  I  V  Q  S  L  P  L  L  N  L  V  Q  A  S  S  P  V  S  V  G  L  *  N  V  W  *  L  W  S  L  G  V  Q  L  *  L  N  R  I  L  Q  T  *  T  P  L  W  L  L  G  F  R  E  V  K  A  K  V  L  L  M  S  C  L  V  T  M  D  S  Q  A  N  S  P  A  L  G  L  S  Q  L  I  S  F  P  *  M  L  V  I  D  I  M  I  L  C  F  L  L  D  L  V  S  L  L  S  L  *  R  A  K  I  S  S  S  G  V  L  L  A  A  Q  S  L  Y  I  F  L  F  N  G  Y  L  I  S  *  Y  K  S  L  Q  E  R  S  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14140" stop="14365"/>
                    <exon start="15018" stop="15222"/>
                    <exon start="15834" stop="15924"/>
                    <exon start="16026" stop="16171"/>
                    <exon start="16372" stop="16615"/>
                    <exon start="16704" stop="16808"/>
                    <exon start="16974" stop="17156"/>
                    <exon start="17249" stop="17453"/>
                    <exon start="18344" stop="18828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1887</number_coding_nucleotides>
                  <number_encoded_amino_acids>629</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRLTMGKFAITMMGFLLLCFCAEAVYMKYKDPKQPLNVRIRDLMNRMSLEEKIGQMTQIERHVASPQIMRKYFIGSVLSGGGSAPFPKATAADWVKMVNEIQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPQLVKRIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHRIVQAMTEIIPGLQGDAPANSRKGVPFVGGKTKVAACAKHFVGDGGTTKGIDENNTVIDMNGLLNIHMPAYFDSILKGVSTIMVSYSSWNGKRMHANRDLITGFLKGKLKFRGFVISDWEAIDKITEPPRANYSYSVQAGVLAGLDMIMGQENLVEFLDDLAFQVRNNIIPMSRIDDAVMRILRVKFVMGLFENPLADLSLANQLGSQEHRELAREAVRKSLVLLKNGKVTNQPLLPLPKKVTKILVAGIHADNLGYQCGGWTISWQGIGGNDLITGTTILNAVKKTVHPSTQVVYQENPDVNFVKSNHFSYAIVVVGETPYAEMFGDSAKLTIAEPGPSIISSVCGVVKCVVVVVSGRPVVIEPYLANIDALVAAWLPGSEGQGVADVLFGDYGFTGKLARTWFKSVDQLPMNVGDRHYDPLFPFGFGLTTKPVKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14035" e_stop="14035"/>
            <exon e_start="14119" e_stop="14365"/>
            <exon e_start="15018" e_stop="15222"/>
            <exon e_start="15834" e_stop="15924"/>
            <exon e_start="16026" e_stop="16368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.248" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14035" e_stop="14035" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.248" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14036" i_stop="14118" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14119" e_stop="14365" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15018" e_stop="15222" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.987">
            <gDNA_intron_boundary i_start="15223" i_stop="15833" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15834" e_stop="15924" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="16026" e_stop="16368" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14035" stop="14035"/>
              <exon start="14119" stop="14365"/>
              <exon start="15018" stop="15153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14122" stop="14285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14131" stop="14365"/>
              <exon start="15018" stop="15207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14187" stop="14365"/>
              <exon start="15018" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15099" stop="15222"/>
              <exon start="15834" stop="15924"/>
              <exon start="16026" stop="16368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>A : ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG : GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAG : AGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA : GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCATAGAATTGTTCAGGCAATGACTGAGATCATTCCTGGTTTACAAGGAGATGCTCCGGCTAACTCCCGTAAGGGTGTTCCGTTTGTCGGAGGAAAGTATGTTTCTCTAGTCTTTCACATCTTTATCCTTTCTAACTTCGTTGTAAGTTCATTTGACTGCAAAGTATTGTGATATAACTTTCATCTAGCTGTAACATTCATTATTTCATTACACATCCTCGTCCATATTTAGCCTTTACGTCTATCTAGTATATGGTCTCCAATGACATGATTGTGCATTTCTAAATGTGCTC</gDNA_template>
            <first_frame>  : N  N  H  S  R  K  L  N  K  K  I  N  N  G  E  I  C  N  N  N  D  G  F  S  A  F  V  F  L  C  *  S  S  L  H  E  V  Q  G  P  K  T  A  I  E  C  *  N  Q  G  F  D  E  Q  N  E  P  *  R  E  N  R  S  D  D  P  D  *  E  T  C  S  F  T  S  D  H  E  E  I  L  H  W :   E  C  T  E  W  W  R  K  C  A  I  S  K  G  Y  C  C  *  L  G  E  D  G  K  *  D  S  K  G  F  T  F  N  T  P  W  Y  S  H  D  L  W  N  *  C  S  A  R  A  Q  Q  C  L  Q  S  N  N  F  S  T  Q  C  W  P  W  S  H  K  :  R  P  T  A  C  K  A  D  W  S  C  D  C  P  *  S  Q  S  H  R  N  P  L  H  F  C  T  V  H  R   : S  L  Q  R  S  K  M  G  S  V  L  *  K  L  *  *  R  S  *  N  C  S  G  N  D  *  D  H  S  W  F  T  R  R  C  S  G  *  L  P  *  G  C  S  V  C  R  R  K  V  C  F  S  S  L  S  H  L  Y  P  F  *  L  R  C  K  F  I  *  L  Q  S  I  V  I  *  L  S  S  S  C  N  I  H  Y  F  I  T  H  P  R  P  Y  L  A  F  T  S  I  *  Y  M  V  S  N  D  M  I  V  H  F  *  M  C   </first_frame>
            <second_frame>  :  I  I  I  V  G  S  *  T  R  R  L  T  M  G  K  F  A  I  T  M  M  G  F  L  L  L  C  F  C  A  E  A  V  Y  M  K  Y  K  D  P  K  Q  P  L  N  V  R  I  R  D  L  M  N  R  M  S  L  E  E  K  I  G  Q  M  T  Q  I  E  R  H  V  A  S  P  Q  I  M  R  K  Y  F  I   : G  S  V  L  S  G  G  G  S  A  P  F  P  K  A  T  A  A  D  W  V  K  M  V  N  E  I  Q  K  G  S  L  S  T  R  L  G  I  P  M  I  Y  G  I  D  A  V  H  G  H  N  N  V  Y  K  A  T  I  F  P  H  N  V  G  L  G  V  T  R :   D  P  Q  L  V  K  R  I  G  A  A  T  A  L  E  V  R  A  T  G  I  P  Y  T  F  A  P  C  I  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  S  E  D  H  R  I  V  Q  A  M  T  E  I  I  P  G  L  Q  G  D  A  P  A  N  S  R  K  G  V  P  F  V  G  G  K  Y  V  S  L  V  F  H  I  F  I  L  S  N  F  V  V  S  S  F  D  C  K  V  L  *  Y  N  F  H  L  A  V  T  F  I  I  S  L  H  I  L  V  H  I  *  P  L  R  L  S  S  I  W  S  P  M  T  *  L  C  I  S  K  C  A  </second_frame>
            <third_frame>  :   *  S  *  *  E  A  K  Q  E  D  *  Q  W  G  N  L  Q  *  Q  *  W  V  F  C  F  C  V  S  V  L  K  Q  F  T  *  S  T  R  T  Q  N  S  H  *  M  L  E  S  G  I  *  *  T  E  *  A  L  K  R  K  *  V  R  *  P  R  L  R  D  M  *  L  H  L  R  S  *  G  N  T  S  L  :  G  V  Y  *  V  V  E  E  V  R  H  F  Q  R  L  L  L  L  T  G  *  R  W  *  M  R  F  K  R  V  H  F  Q  H  A  L  V  F  P  *  F  M  E  L  M  Q  C  T  G  T  T  M  S  T  K  Q  Q  F  F  H  T  M  L  A  L  E  S  Q   : E  T  H  S  L  *  S  G  L  E  L  R  L  P  L  K  S  E  P  Q  E  S  L  T  L  L  H  R  A  S  Q :   S  A  E  I  Q  D  G  V  G  A  M  K  A  I  V  K  I  I  E  L  F  R  Q  *  L  R  S  F  L  V  Y  K  E  M  L  R  L  T  P  V  R  V  F  R  L  S  E  E  S  M  F  L  *  S  F  T  S  L  S  F  L  T  S  L  *  V  H  L  T  A  K  Y  C  D  I  T  F  I  *  L  *  H  S  L  F  H  Y  T  S  S  S  I  F  S  L  Y  V  Y  L  V  Y  G  L  Q  *  H  D  C  A  F  L  N  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14140" stop="14365"/>
                    <exon start="15018" stop="15222"/>
                    <exon start="15834" stop="15924"/>
                    <exon start="16026" stop="16247"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRLTMGKFAITMMGFLLLCFCAEAVYMKYKDPKQPLNVRIRDLMNRMSLEEKIGQMTQIERHVASPQIMRKYFIGSVLSGGGSAPFPKATAADWVKMVNEIQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPQLVKRIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHRIVQAMTEIIPGLQGDAPANSRKGVPFVGGKYVSLVFHIFILSNFVVSSFDCKVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="14035" e_stop="14035"/>
            <exon e_start="14119" e_stop="14365"/>
            <exon e_start="15018" e_stop="15319"/>
            <exon e_start="15420" e_stop="15924"/>
            <exon e_start="16026" e_stop="16079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.248" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="0.947"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.923"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14035" e_stop="14035" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.248" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14036" i_stop="14118" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14119" e_stop="14365" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="15018" e_stop="15319" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15320" i_stop="15419" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.923">
            <gDNA_exon_boundary e_start="15420" e_stop="15924" e_length="505"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.926">
            <gDNA_exon_boundary e_start="16026" e_stop="16079" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14035" stop="14035"/>
              <exon start="14119" stop="14365"/>
              <exon start="15018" stop="15153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14122" stop="14285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14131" stop="14365"/>
              <exon start="15018" stop="15207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15145" stop="15319"/>
              <exon start="15420" stop="15924"/>
              <exon start="16026" stop="16079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>A : ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG : GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAG : ACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA : GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCAT</gDNA_template>
            <first_frame>  : N  N  H  S  R  K  L  N  K  K  I  N  N  G  E  I  C  N  N  N  D  G  F  S  A  F  V  F  L  C  *  S  S  L  H  E  V  Q  G  P  K  T  A  I  E  C  *  N  Q  G  F  D  E  Q  N  E  P  *  R  E  N  R  S  D  D  P  D  *  E  T  C  S  F  T  S  D  H  E  E  I  L  H  W :   E  C  T  E  W  W  R  K  C  A  I  S  K  G  Y  C  C  *  L  G  E  D  G  K  *  D  S  K  G  F  T  F  N  T  P  W  Y  S  H  D  L  W  N  *  C  S  A  R  A  Q  Q  C  L  Q  S  N  N  F  S  T  Q  C  W  P  W  S  H  K  V  R  E  I  A  G  A  Y  I  H  F  S  S  I  F  H  R  S  *  N  V  Y  T  N  E  K  F  E  E  T  *  K   : D  H  I  A  *  T  W  G  K  R  L  R  D  G  *  N  G  D  *  K  N  S  E  S  L  I  R  S  S  S  R  G  S  I  T  S  S  A  G  I  L  S  L  Y  *  S  I  L  L  Y  I  N  G  G  D  A  K  T  S  C  P  I  Y  L  C  *  S  V  *  G  W  N  H  G  F  T  S  L  S  G  N  L  F  S  R  K  C  Y  F  *  E  I  W  E  D  H  T  Q  I  R  D  I  L  L  I  *  K  R  F  N  T  L  D  G  Y  F  T  T  F  S  L  S  S  F  I  A  L  T  D  T  W  N  N  L  N  F  A  I  E  T  H  S  L  *  S  G  L  E  L  R  L  P  L  K  S  E  P  Q  E  S  L  T  L  L  H  R  A  S  Q :   S  A  E  I  Q  D  G  V  G  A  M  K  A  I  V  K  I   </first_frame>
            <second_frame>  :  I  I  I  V  G  S  *  T  R  R  L  T  M  G  K  F  A  I  T  M  M  G  F  L  L  L  C  F  C  A  E  A  V  Y  M  K  Y  K  D  P  K  Q  P  L  N  V  R  I  R  D  L  M  N  R  M  S  L  E  E  K  I  G  Q  M  T  Q  I  E  R  H  V  A  S  P  Q  I  M  R  K  Y  F  I   : G  S  V  L  S  G  G  G  S  A  P  F  P  K  A  T  A  A  D  W  V  K  M  V  N  E  I  Q  K  G  S  L  S  T  R  L  G  I  P  M  I  Y  G  I  D  A  V  H  G  H  N  N  V  Y  K  A  T  I  F  P  H  N  V  G  L  G  V  T  R  *  G  K  L  R  V  H  I  F  I  S  V  A  F  F  T  D  L  E  M  F  T  Q  M  R  N  L  K  K  H  K  K  :  T  T  L  H  K  H  G  G  R  G  *  E  M  A  E  M  V  I  R  K  I  L  S  L  S  S  G  V  V  R  E  D  Q  L  H  P  L  L  E  F  C  L  C  T  D  Q  F  C  F  T  *  M  G  V  M  L  R  L  L  A  L  S  I  F  A  D  R  Y  E  D  G  T  M  V  S  R  V  C  L  E  I  Y  L  A  G  S  V  T  F  R  K  F  G  K  I  I  L  R  *  G  T  F  C  *  Y  R  R  D  L  T  L  *  M  V  I  L  Q  L  F  L  *  V  L  L  L  H  L  L  I  R  G  I  I  S  T  L  Q  *  R  P  T  A  C  K  A  D  W  S  C  D  C  P  *  S  Q  S  H  R  N  P  L  H  F  C  T  V  H  R   : S  L  Q  R  S  K  M  G  S  V  L  *  K  L  *  *  R  S  </second_frame>
            <third_frame>  :   *  S  *  *  E  A  K  Q  E  D  *  Q  W  G  N  L  Q  *  Q  *  W  V  F  C  F  C  V  S  V  L  K  Q  F  T  *  S  T  R  T  Q  N  S  H  *  M  L  E  S  G  I  *  *  T  E  *  A  L  K  R  K  *  V  R  *  P  R  L  R  D  M  *  L  H  L  R  S  *  G  N  T  S  L  :  G  V  Y  *  V  V  E  E  V  R  H  F  Q  R  L  L  L  L  T  G  *  R  W  *  M  R  F  K  R  V  H  F  Q  H  A  L  V  F  P  *  F  M  E  L  M  Q  C  T  G  T  T  M  S  T  K  Q  Q  F  F  H  T  M  L  A  L  E  S  Q  G  K  G  N  C  G  C  I  Y  S  F  Q  *  H  F  S  Q  I  L  K  C  L  H  K  *  E  I  *  R  N  I  K  R :   P  H  C  I  N  M  G  E  E  A  E  R  W  L  K  W  *  L  E  K  F  *  V  S  H  Q  E  *  F  E  R  I  N  Y  I  L  C  W  N  F  V  F  V  L  I  N  F  A  L  H  K  W  G  *  C  *  D  F  L  P  Y  L  S  L  L  I  G  M  R  M  E  P  W  F  H  E  S  V  W  K  F  I  *  P  E  V  L  L  L  G  N  L  G  R  S  Y  S  D  K  G  H  F  V  D  I  E  E  I  *  H  F  R  W  L  F  Y  N  F  F  F  K  F  F  Y  C  T  Y  *  Y  V  E  *  S  Q  L  C  N  R  D  P  Q  L  V  K  R  I  G  A  A  T  A  L  E  V  R  A  T  G  I  P  Y  T  F  A  P  C  I  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  S  E  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14140" stop="14365"/>
                    <exon start="15018" stop="15226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRLTMGKFAITMMGFLLLCFCAEAVYMKYKDPKQPLNVRIRDLMNRMSLEEKIGQMTQIERHVASPQIMRKYFIGSVLSGGGSAPFPKATAADWVKMVNEIQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="13954" e_stop="13977"/>
            <exon e_start="14119" e_stop="14365"/>
            <exon e_start="15018" e_stop="15319"/>
            <exon e_start="15420" e_stop="15924"/>
            <exon e_start="16026" e_stop="16079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.196" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.923"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13954" e_stop="13977" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.196" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13978" i_stop="14118" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14119" e_stop="14365" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14366" i_stop="15017" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15018" e_stop="15319" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15320" i_stop="15419" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.923">
            <gDNA_exon_boundary e_start="15420" e_stop="15924" e_length="505"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15925" i_stop="16025" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.926">
            <gDNA_exon_boundary e_start="16026" e_stop="16079" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13954" stop="13977"/>
              <exon start="14119" stop="14365"/>
              <exon start="15018" stop="15289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14122" stop="14285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14131" stop="14365"/>
              <exon start="15018" stop="15207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15145" stop="15319"/>
              <exon start="15420" stop="15924"/>
              <exon start="16026" stop="16079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTTGAGCTAGCAGTAGCACA : ATAATCATAGTAGGAAGCTAAACAAGAAGATTAACAATGGGGAAATTTGCAATAACAATGATGGGTTTTCTGCTTTTGTGTTTCTGTGCTGAAGCAGTTTACATGAAGTACAAGGACCCAAAACAGCCATTGAATGTTAGAATCAGGGATTTGATGAACAGAATGAGCCTTGAAGAGAAAATAGGTCAGATGACCCAGATTGAGAGACATGTAGCTTCACCTCAGATCATGAGGAAATACTTCATTG : GGAGTGTACTGAGTGGTGGAGGAAGTGCGCCATTTCCAAAGGCTACTGCTGCTGACTGGGTGAAGATGGTAAATGAGATTCAAAAGGGTTCACTTTCAACACGCCTTGGTATTCCCATGATTTATGGAATTGATGCAGTGCACGGGCACAACAATGTCTACAAAGCAACAATTTTTCCACACAATGTTGGCCTTGGAGTCACAAGGTAAGGGAAATTGCGGGTGCATATATTCATTTCAGTAGCATTTTTCACAGATCTTGAAATGTTTACACAAATGAGAAATTTGAAGAAACATAAAAAG : ACCACATTGCATAAACATGGGGGAAGAGGCTGAGAGATGGCTGAAATGGTGATTAGAAAAATTCTGAGTCTCTCATCAGGAGTAGTTCGAGAGGATCAATTACATCCTCTGCTGGAATTTTGTCTTTGTACTGATCAATTTTGCTTTACATAAATGGGGGTGATGCTAAGACTTCTTGCCCTATCTATCTTTGCTGATCGGTATGAGGATGGAACCATGGTTTCACGAGTCTGTCTGGAAATTTATTTAGCCGGAAGTGTTACTTTTAGGAAATTTGGGAAGATCATACTCAGATAAGGGACATTTTGTTGATATAGAAGAGATTTAACACTTTAGATGGTTATTTTACAACTTTTTCTTTAAGTTCTTTTATTGCACTTACTGATACGTGGAATAATCTCAACTTTGCAATAGAGACCCACAGCTTGTAAAGCGGATTGGAGCTGCGACTGCCCTTGAAGTCAGAGCCACAGGAATCCCTTACACTTTTGCACCGTGCATCGCA : GTCTGCAGAGATCCAAGATGGGGTCGGTGCTATGAAAGCTATAGTGAAGATCAT</gDNA_template>
            <first_frame> L  I  *  A  S  S  S  T  :  I  I  I  V  G  S  *  T  R  R  L  T  M  G  K  F  A  I  T  M  M  G  F  L  L  L  C  F  C  A  E  A  V  Y  M  K  Y  K  D  P  K  Q  P  L  N  V  R  I  R  D  L  M  N  R  M  S  L  E  E  K  I  G  Q  M  T  Q  I  E  R  H  V  A  S  P  Q  I  M  R  K  Y  F  I   : G  S  V  L  S  G  G  G  S  A  P  F  P  K  A  T  A  A  D  W  V  K  M  V  N  E  I  Q  K  G  S  L  S  T  R  L  G  I  P  M  I  Y  G  I  D  A  V  H  G  H  N  N  V  Y  K  A  T  I  F  P  H  N  V  G  L  G  V  T  R  *  G  K  L  R  V  H  I  F  I  S  V  A  F  F  T  D  L  E  M  F  T  Q  M  R  N  L  K  K  H  K  K  :  T  T  L  H  K  H  G  G  R  G  *  E  M  A  E  M  V  I  R  K  I  L  S  L  S  S  G  V  V  R  E  D  Q  L  H  P  L  L  E  F  C  L  C  T  D  Q  F  C  F  T  *  M  G  V  M  L  R  L  L  A  L  S  I  F  A  D  R  Y  E  D  G  T  M  V  S  R  V  C  L  E  I  Y  L  A  G  S  V  T  F  R  K  F  G  K  I  I  L  R  *  G  T  F  C  *  Y  R  R  D  L  T  L  *  M  V  I  L  Q  L  F  L  *  V  L  L  L  H  L  L  I  R  G  I  I  S  T  L  Q  *  R  P  T  A  C  K  A  D  W  S  C  D  C  P  *  S  Q  S  H  R  N  P  L  H  F  C  T  V  H  R   : S  L  Q  R  S  K  M  G  S  V  L  *  K  L  *  *  R  S  </first_frame>
            <second_frame>  *  F  E  L  A  V  A  Q :   *  S  *  *  E  A  K  Q  E  D  *  Q  W  G  N  L  Q  *  Q  *  W  V  F  C  F  C  V  S  V  L  K  Q  F  T  *  S  T  R  T  Q  N  S  H  *  M  L  E  S  G  I  *  *  T  E  *  A  L  K  R  K  *  V  R  *  P  R  L  R  D  M  *  L  H  L  R  S  *  G  N  T  S  L  :  G  V  Y  *  V  V  E  E  V  R  H  F  Q  R  L  L  L  L  T  G  *  R  W  *  M  R  F  K  R  V  H  F  Q  H  A  L  V  F  P  *  F  M  E  L  M  Q  C  T  G  T  T  M  S  T  K  Q  Q  F  F  H  T  M  L  A  L  E  S  Q  G  K  G  N  C  G  C  I  Y  S  F  Q  *  H  F  S  Q  I  L  K  C  L  H  K  *  E  I  *  R  N  I  K  R :   P  H  C  I  N  M  G  E  E  A  E  R  W  L  K  W  *  L  E  K  F  *  V  S  H  Q  E  *  F  E  R  I  N  Y  I  L  C  W  N  F  V  F  V  L  I  N  F  A  L  H  K  W  G  *  C  *  D  F  L  P  Y  L  S  L  L  I  G  M  R  M  E  P  W  F  H  E  S  V  W  K  F  I  *  P  E  V  L  L  L  G  N  L  G  R  S  Y  S  D  K  G  H  F  V  D  I  E  E  I  *  H  F  R  W  L  F  Y  N  F  F  F  K  F  F  Y  C  T  Y  *  Y  V  E  *  S  Q  L  C  N  R  D  P  Q  L  V  K  R  I  G  A  A  T  A  L  E  V  R  A  T  G  I  P  Y  T  F  A  P  C  I  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  S  E  D  H </second_frame>
            <third_frame>   D  L  S  *  Q  *  H   : N  N  H  S  R  K  L  N  K  K  I  N  N  G  E  I  C  N  N  N  D  G  F  S  A  F  V  F  L  C  *  S  S  L  H  E  V  Q  G  P  K  T  A  I  E  C  *  N  Q  G  F  D  E  Q  N  E  P  *  R  E  N  R  S  D  D  P  D  *  E  T  C  S  F  T  S  D  H  E  E  I  L  H  W :   E  C  T  E  W  W  R  K  C  A  I  S  K  G  Y  C  C  *  L  G  E  D  G  K  *  D  S  K  G  F  T  F  N  T  P  W  Y  S  H  D  L  W  N  *  C  S  A  R  A  Q  Q  C  L  Q  S  N  N  F  S  T  Q  C  W  P  W  S  H  K  V  R  E  I  A  G  A  Y  I  H  F  S  S  I  F  H  R  S  *  N  V  Y  T  N  E  K  F  E  E  T  *  K   : D  H  I  A  *  T  W  G  K  R  L  R  D  G  *  N  G  D  *  K  N  S  E  S  L  I  R  S  S  S  R  G  S  I  T  S  S  A  G  I  L  S  L  Y  *  S  I  L  L  Y  I  N  G  G  D  A  K  T  S  C  P  I  Y  L  C  *  S  V  *  G  W  N  H  G  F  T  S  L  S  G  N  L  F  S  R  K  C  Y  F  *  E  I  W  E  D  H  T  Q  I  R  D  I  L  L  I  *  K  R  F  N  T  L  D  G  Y  F  T  T  F  S  L  S  S  F  I  A  L  T  D  T  W  N  N  L  N  F  A  I  E  T  H  S  L  *  S  G  L  E  L  R  L  P  L  K  S  E  P  Q  E  S  L  T  L  L  H  R  A  S  Q :   S  A  E  I  Q  D  G  V  G  A  M  K  A  I  V  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14140" stop="14365"/>
                    <exon start="15018" stop="15226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRLTMGKFAITMMGFLLLCFCAEAVYMKYKDPKQPLNVRIRDLMNRMSLEEKIGQMTQIERHVASPQIMRKYFIGSVLSGGGSAPFPKATAADWVKMVNEIQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18929" PGL_stop="18479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18929" e_stop="18479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="18929" e_stop="18479" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18929" stop="18479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18914" stop="18498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTCTTTCTTGTAAACTCTTATATTATGATATTAAATATCCATTAAACAAAAAAATATATAAAGATTGAGCAGCAAGTAGAACTCCAGATGAAGAGATTTTAGCTCTTCACAGGCTTAGTAGTGAGACCAAATCCAAAAGGAAACAAAGGATCATAATGTCGATCACCAACATTCATGGGAAGCTGATCAACTGACTTAAACCAAGTGCGGGCGAGTTTGCCTGTGAATCCATAGTCACCAAACAGGACATCAGCAACACCTTGGCCTTCACTTCCCGGAAGCCAAGCAGCCACAAGGGCGTCTATGTTTGCAAGATACGGTTCAATCACAACTGGACGCCCAGAGACCACAACTACCACACATTTCACAACCCCACAGACACTGGAGATGATGCTTGGACCAGGTTCAGCAATGGTAAGCTTTGCACTATCGCCAAACATCTCCGCAT</gDNA_template>
            <first_frame> C  F  F  L  V  N  S  Y  I  M  I  L  N  I  H  *  T  K  K  Y  I  K  I  E  Q  Q  V  E  L  Q  M  K  R  F  *  L  F  T  G  L  V  V  R  P  N  P  K  G  N  K  G  S  *  C  R  S  P  T  F  M  G  S  *  S  T  D  L  N  Q  V  R  A  S  L  P  V  N  P  *  S  P  N  R  T  S  A  T  P  W  P  S  L  P  G  S  Q  A  A  T  R  A  S  M  F  A  R  Y  G  S  I  T  T  G  R  P  E  T  T  T  T  T  H  F  T  T  P  Q  T  L  E  M  M  L  G  P  G  S  A  M  V  S  F  A  L  S  P  N  I  S  A  </first_frame>
            <second_frame>  A  S  F  L  *  T  L  I  L  *  Y  *  I  S  I  K  Q  K  N  I  *  R  L  S  S  K  *  N  S  R  *  R  D  F  S  S  S  Q  A  *  *  *  D  Q  I  Q  K  E  T  K  D  H  N  V  D  H  Q  H  S  W  E  A  D  Q  L  T  *  T  K  C  G  R  V  C  L  *  I  H  S  H  Q  T  G  H  Q  Q  H  L  G  L  H  F  P  E  A  K  Q  P  Q  G  R  L  C  L  Q  D  T  V  Q  S  Q  L  D  A  Q  R  P  Q  L  P  H  I  S  Q  P  H  R  H  W  R  *  C  L  D  Q  V  Q  Q  W  *  A  L  H  Y  R  Q  T  S  P  H </second_frame>
            <third_frame>   L  L  S  C  K  L  L  Y  Y  D  I  K  Y  P  L  N  K  K  I  Y  K  D  *  A  A  S  R  T  P  D  E  E  I  L  A  L  H  R  L  S  S  E  T  K  S  K  R  K  Q  R  I  I  M  S  I  T  N  I  H  G  K  L  I  N  *  L  K  P  S  A  G  E  F  A  C  E  S  I  V  T  K  Q  D  I  S  N  T  L  A  F  T  S  R  K  P  S  S  H  K  G  V  Y  V  C  K  I  R  F  N  H  N  W  T  P  R  D  H  N  Y  H  T  F  H  N  P  T  D  T  G  D  D  A  W  T  R  F  S  N  G  K  L  C  T  I  A  K  H  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18732" stop="18481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKPSAGEFACESIVTKQDISNTLAFTSRKPSSHKGVYVCKIRFNHNWTPRDHNYHTFHNPTDTGDDAWTRFSNGKLCTIAKHLR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18692" stop="18480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPNRTSATPWPSLPGSQAATRASMFARYGSITTGRPETTTTTHFTTPQTLEMMLGPGSAMVSFALSPNISA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28773" PGL_stop="29798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28773" e_stop="28896"/>
            <exon e_start="29011" e_stop="29798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.672" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28773" e_stop="28896" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.672">
            <gDNA_intron_boundary i_start="28897" i_stop="29010" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="29011" e_stop="29798" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28773" stop="28896"/>
              <exon start="29011" stop="29798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCCCTTCCAAAGAAAGCGCCAAAAATACTTGTAGCTGGAACTCATGCAGACAATTTGGGTTACCAATGCGGAGGCTGGACAATAGAATGGCAGGGTGTCGCAGGCAATGATTTAACAGTTG : GAACCACTATTTTAAGTGCTATCAAGAAAACTGTGGATCCTTATACACAAGTAGTGTACCAGCAGAATCCTGATGCAAACTTTGTGGAGTCAAACAAATTCGACTACGCCATCGTTGTAGTAGGTGAAGTCCCATATGCAGAGATGATGGGCGACAGCTCAAATCTTACAATAACAGAACCTGGTCCTAGCACTATTAACAATGTCTGTGGGGCTGTGAAATGTGTTGTAGTAGTCGTCTCTGGTCGTCCAGTCGTGCTAGAGCCTTATGTTGAAAAGATAGATGGACTTGTCGCTGCTTGGCTTCCGGGGACTGAAGGCCAAGGTGTTGCAGATGTTTTATTTGGTGACTATGGTTTCACTGGCAAACTTGCTAGGACTTGGTTCAAGTCAGTGGACCAGCTTCCTATGAATGTCGGCGATCGCAACTACAATCCCCTCTTTCCCTTTGGATTTGGTCTCACTACTCAGGCAGTAAAATTGAATTGAAAGACAGCAGTGATACTGTAGTGTGTATGACATTCAGTTTTTGGATAGAGTTTCATCATGTTAAGAGCTGGTTTCAGAATACTAGTCAACAGAAGATGAGGTACAAAAGGAACTATGAAATCTTTTGCAGAAGTTAGTTATGGGGCAAGCAGTTCTTTAGGAACACAAGGGAGTAGACACCTACTTGAAAAGCTAGAGTGTTATTATTCATTACTGAAACTTGAAGAAAGAGCAGAAGGTAGAAAATTGTATTAAGAGCTTCCCTTTCAATTATTGGTATTAAATGCTATAAATTTATGA</gDNA_template>
            <first_frame> L  P  L  P  K  K  A  P  K  I  L  V  A  G  T  H  A  D  N  L  G  Y  Q  C  G  G  W  T  I  E  W  Q  G  V  A  G  N  D  L  T  V   : G  T  T  I  L  S  A  I  K  K  T  V  D  P  Y  T  Q  V  V  Y  Q  Q  N  P  D  A  N  F  V  E  S  N  K  F  D  Y  A  I  V  V  V  G  E  V  P  Y  A  E  M  M  G  D  S  S  N  L  T  I  T  E  P  G  P  S  T  I  N  N  V  C  G  A  V  K  C  V  V  V  V  V  S  G  R  P  V  V  L  E  P  Y  V  E  K  I  D  G  L  V  A  A  W  L  P  G  T  E  G  Q  G  V  A  D  V  L  F  G  D  Y  G  F  T  G  K  L  A  R  T  W  F  K  S  V  D  Q  L  P  M  N  V  G  D  R  N  Y  N  P  L  F  P  F  G  F  G  L  T  T  Q  A  V  K  L  N  *  K  T  A  V  I  L  *  C  V  *  H  S  V  F  G  *  S  F  I  M  L  R  A  G  F  R  I  L  V  N  R  R  *  G  T  K  G  T  M  K  S  F  A  E  V  S  Y  G  A  S  S  S  L  G  T  Q  G  S  R  H  L  L  E  K  L  E  C  Y  Y  S  L  L  K  L  E  E  R  A  E  G  R  K  L  Y  *  E  L  P  F  Q  L  L  V  L  N  A  I  N  L  * </first_frame>
            <second_frame>  F  P  F  Q  R  K  R  Q  K  Y  L  *  L  E  L  M  Q  T  I  W  V  T  N  A  E  A  G  Q  *  N  G  R  V  S  Q  A  M  I  *  Q  L  :  E  P  L  F  *  V  L  S  R  K  L  W  I  L  I  H  K  *  C  T  S  R  I  L  M  Q  T  L  W  S  Q  T  N  S  T  T  P  S  L  *  *  V  K  S  H  M  Q  R  *  W  A  T  A  Q  I  L  Q  *  Q  N  L  V  L  A  L  L  T  M  S  V  G  L  *  N  V  L  *  *  S  S  L  V  V  Q  S  C  *  S  L  M  L  K  R  *  M  D  L  S  L  L  G  F  R  G  L  K  A  K  V  L  Q  M  F  Y  L  V  T  M  V  S  L  A  N  L  L  G  L  G  S  S  Q  W  T  S  F  L  *  M  S  A  I  A  T  T  I  P  S  F  P  L  D  L  V  S  L  L  R  Q  *  N  *  I  E  R  Q  Q  *  Y  C  S  V  Y  D  I  Q  F  L  D  R  V  S  S  C  *  E  L  V  S  E  Y  *  S  T  E  D  E  V  Q  K  E  L  *  N  L  L  Q  K  L  V  M  G  Q  A  V  L  *  E  H  K  G  V  D  T  Y  L  K  S  *  S  V  I  I  H  Y  *  N  L  K  K  E  Q  K  V  E  N  C  I  K  S  F  P  F  N  Y  W  Y  *  M  L  *  I  Y   </second_frame>
            <third_frame>   S  P  S  K  E  S  A  K  N  T  C  S  W  N  S  C  R  Q  F  G  L  P  M  R  R  L  D  N  R  M  A  G  C  R  R  Q  *  F  N  S  W :   N  H  Y  F  K  C  Y  Q  E  N  C  G  S  L  Y  T  S  S  V  P  A  E  S  *  C  K  L  C  G  V  K  Q  I  R  L  R  H  R  C  S  R  *  S  P  I  C  R  D  D  G  R  Q  L  K  S  Y  N  N  R  T  W  S  *  H  Y  *  Q  C  L  W  G  C  E  M  C  C  S  S  R  L  W  S  S  S  R  A  R  A  L  C  *  K  D  R  W  T  C  R  C  L  A  S  G  D  *  R  P  R  C  C  R  C  F  I  W  *  L  W  F  H  W  Q  T  C  *  D  L  V  Q  V  S  G  P  A  S  Y  E  C  R  R  S  Q  L  Q  S  P  L  S  L  W  I  W  S  H  Y  S  G  S  K  I  E  L  K  D  S  S  D  T  V  V  C  M  T  F  S  F  W  I  E  F  H  H  V  K  S  W  F  Q  N  T  S  Q  Q  K  M  R  Y  K  R  N  Y  E  I  F  C  R  S  *  L  W  G  K  Q  F  F  R  N  T  R  E  *  T  P  T  *  K  A  R  V  L  L  F  I  T  E  T  *  R  K  S  R  R  *  K  I  V  L  R  A  S  L  S  I  I  G  I  K  C  Y  K  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28773" stop="28896"/>
                    <exon start="29011" stop="29498"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLPKKAPKILVAGTHADNLGYQCGGWTIEWQGVAGNDLTVGTTILSAIKKTVDPYTQVVYQQNPDANFVESNKFDYAIVVVGEVPYAEMMGDSSNLTITEPGPSTINNVCGAVKCVVVVVSGRPVVLEPYVEKIDGLVAAWLPGTEGQGVADVLFGDYGFTGKLARTWFKSVDQLPMNVGDRNYNPLFPFGFGLTTQAVKLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41654" PGL_stop="29909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41654" e_stop="41520"/>
            <exon e_start="41440" e_stop="41249"/>
            <exon e_start="41166" e_stop="40983"/>
            <exon e_start="40903" e_stop="40833"/>
            <exon e_start="40758" e_stop="40607"/>
            <exon e_start="39338" e_stop="39170"/>
            <exon e_start="39068" e_stop="38922"/>
            <exon e_start="36902" e_stop="36810"/>
            <exon e_start="36597" e_stop="36423"/>
            <exon e_start="36340" e_stop="36151"/>
            <exon e_start="36057" e_stop="35795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.970"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.782" e_score="0.976"/>
          <exon-intron don_prob="0.946" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="41654" e_stop="41520" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41519" i_stop="41441" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41440" e_stop="41249" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41248" i_stop="41167" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41166" e_stop="40983" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.667">
            <gDNA_intron_boundary i_start="40982" i_stop="40904" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40903" e_stop="40833" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40832" i_stop="40759" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40758" e_stop="40607" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.722" acc_prob="0.984">
            <gDNA_intron_boundary i_start="40606" i_stop="39339" i_length="1268"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="39338" e_stop="39170" e_length="169"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.782">
            <gDNA_intron_boundary i_start="39169" i_stop="39069" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39068" e_stop="38922" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.946" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38921" i_stop="36903" i_length="2019"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36902" e_stop="36810" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36597" e_stop="36423" e_length="175"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36340" e_stop="36151" e_length="190"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="0.977">
            <gDNA_exon_boundary e_start="36057" e_stop="35795" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41654" stop="41520"/>
              <exon start="41440" stop="41340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41400" stop="41249"/>
              <exon start="41166" stop="40983"/>
              <exon start="40903" stop="40833"/>
              <exon start="40758" stop="40607"/>
              <exon start="39338" stop="39170"/>
              <exon start="39068" stop="39059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39170"/>
              <exon start="39068" stop="38922"/>
              <exon start="36902" stop="36810"/>
              <exon start="36597" stop="36466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36902" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36840" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36151"/>
              <exon start="36057" stop="35795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36840" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36151"/>
              <exon start="36057" stop="35795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36839" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36151"/>
              <exon start="36057" stop="35795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36837" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36151"/>
              <exon start="36057" stop="35795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36833" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36151"/>
              <exon start="36057" stop="35795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAACTTGTGGCTGAGCAGCAGAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGAAACAATCCATCTTAAAAGCTCTTCAAAAGAAG : GAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAG : ACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAA : GGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAG : GCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGAC : GTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG : AAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAG : GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG : GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA : ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG : TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</gDNA_template>
            <first_frame> N  E  L  V  A  E  Q  Q  K  N  D  A  G  L  G  H  D  K  S  E  L  E  Q  L  K  Q  D  I  L  N  A  E  R  Q  K  Q  S  I  L  K  A  L  Q  K  K  :  E  K  L  L  G  N  I  L  S  Q  I  D  Q  L  R  A  S  I  A  M  K  Q  D  E  M  G  T  E  L  V  D  H  L  T  P  E  E  R  D  S  L  S  R  L  N  P  E  I  T  A  L  K  E  Q  L  I  A  C  R  A  N  R  I  E  :  T  E  T  R  K  E  E  L  E  M  N  L  S  T  N  L  E  R  R  K  Q  E  L  M  A  M  N  S  S  V  D  V  D  M  L  Q  A  E  V  E  S  K  Y  Q  E  L  K  D  A  D  S  L  V  D  H  V  T  K  E  L  T   : R  V  S  R  N  I  D  E  R  N  K  R  L  K  Q  I  K  Q  E  K  D  N  L  K  :  A  L  E  D  K  Y  Q  N  T  L  Q  D  E  A  R  E  L  E  Q  M  L  S  K  R  N  T  Y  L  A  K  Q  E  D  Y  S  K  K  I  R  E  L  G  P  L  S  S  D  A  F  E  T :   Y  K  R  K  N  V  K  E  L  Y  K  M  L  H  K  C  N  E  Q  L  Q  Q  F  S  H  V  N  K  K  A  L  D  Q  Y  V  N  F  T  E  Q  R  E  E  L  Q  R  R  Q  A  E  L  D  A  G  D  E  :  K  I  K  E  L  I  S  V  L  D  M  R  K  D  E  S  I  E  R  T  F  K  G  V  A  K  H  F  R  E  V  F  S  Q  L  V  Q  G  G  H  G  F  L  V  M  M  K  K  K  :  D  G  E  E  D  D  N  D  P  D  D  D  E  P  R  A  D  A  E  G  R  V  E  K  Y  I  G  V  K  V  K  :  V  S  F  T  G  Q  G  E  T  Q  S  M  K  Q  L  S  G  G  Q  K  T  V  V  A  L  A  L  I  F  A  I  Q  R  C  D  P  A  P  F  Y  L  F  D  E  I  D  A  A  L  D  P  Q  Y  R  T  A  V  G   : N  M  V  R  D  L  A  D  R  G  S  T  Q  F  I  T  T  T  F  R  P  E  L  V  K  V  A  D  K  I  Y  S  V  S  H  K  N  R  V  S  K  V  T  V  V  S  R  E  G  A  L  D  F  I  E  Q  D  Q  S  H  N  *  L  S :   R  T  R  E  V  W  R  A  G  E  R  S  F  S  A  T  A  L  L  V  I  A  D  D  S  L  W  D  M  L  N  R  W  L  *  N  I  D  A  N  V  *  C  M  L  W  V  L  I  S  V  N  V  E  N  F  I  D  V  T  S  T  S  Y  S  C  T  Y  *  Y  I  I  Y  I  Y  I  Y  I  L  Y  Y  I  I  S  R  K  K  </first_frame>
            <second_frame>  M  N  L  W  L  S  S  R  K  M  M  L  A  W  V  T  T  S  L  S  *  N  S  L  N  K  T  F  L  M  L  K  D  R  N  N  P  S  *  K  L  F  K  R  R :   R  N  C  L  V  I  F  *  V  K  *  I  S  S  E  L  V  *  L  *  N  K  M  K  W  E  Q  N  L  L  I  I  *  R  R  K  S  E  I  L  C  H  V  *  T  L  K  S  R  P  *  R  S  S  *  L  L  A  G  Q  I  G  *  R :   L  K  L  E  K  R  S  L  R  *  I  C  Q  Q  I  L  K  D  E  S  K  S  *  W  R  *  I  L  L  S  T  L  I  C  Y  R  L  K  L  R  A  S  I  R  N  S  R  M  R  T  H  *  L  I  M  S  P  K  S  L  Q  :  G  F  L  E  I  *  M  N  E  T  R  G  S  S  R  S  N  R  K  R  I  T  *  R :   L  L  K  I  S  I  R  I  H  F  R  M  K  Q  E  N  W  N  R  C  *  V  N  G  T  P  I  L  Q  S  K  K  I  T  L  R  K  F  G  N  W  V  L  Y  L  L  M  P  L  R   : R  T  K  E  R  T  *  K  N  Y  I  R  C  C  T  S  V  T  S  S  C  N  S  S  A  M  *  I  K  R  H  L  I  N  M  *  T  L  L  S  K  E  K  N  S  K  E  G  K  L  N  W  M  L  G  M  R :   K  S  R  N  L  Y  L  F  W  I  *  G  R  M  N  Q  L  S  A  R  S  R  V  W  L  N  I  S  V  K  Y  S  L  S  L  Y  K  E  V  T  G  S  *  L  *  *  R  K  R :   M  V  R  K  M  T  M  I  L  M  M  M  S  R  V  L  M  Q  R  E  E  L  R  N  I  L  V  *  K  *  R :   C  R  S  L  D  K  E  K  H  S  Q  *  N  S  Y  Q  G  A  R  K  L  W  *  H  W  H  L  Y  L  P  Y  K  D  V  I  L  P  H  F  I  F  L  M  R  *  M  Q  H  *  I  L  S  T  E  Q  P  W  G  :  I  W  F  V  I  W  Q  T  G  V  A  R  N  L  S  R  R  H  F  A  R  S  S  *  R  W  L  I  R  Y  I  V  *  A  T  K  I  E  L  A  R  S  L  L  Y  P  G  K  E  P  *  I  L  L  S  R  I  S  H  I  T  D  *   : V  A  Q  E  R  C  G  G  L  V  K  E  A  F  L  L  L  R  C  L  L  L  L  M  I  R  C  G  I  C  *  I  V  G  C  E  I  L  M  L  M  F  N  V  C  Y  G  C  *  F  L  *  M  *  K  T  L  L  M  *  R  L  L  H  T  A  A  L  I  N  I  S  Y  I  Y  I  Y  I  Y  Y  I  I  L  *  V  G  R  R </second_frame>
            <third_frame>   *  T  C  G  *  A  A  E  K  *  C  W  P  G  S  R  Q  V  *  V  R  T  A  *  T  R  H  S  *  C  *  K  T  E  T  I  H  L  K  S  S  S  K  E   : G  E  T  A  W  *  Y  S  E  S  N  R  S  A  Q  S  *  Y  S  Y  E  T  R  *  N  G  N  R  T  C  *  S  F  N  A  G  R  A  R  F  F  V  T  F  E  P  *  N  H  G  P  E  G  A  A  D  C  L  Q  G  K  S  D  R   : D  *  N  *  K  R  G  A  *  D  E  S  V  N  K  S  *  K  T  K  A  R  V  N  G  D  E  F  F  C  R  R  *  Y  A  T  G  *  S  *  E  Q  V  S  G  T  Q  G  C  G  L  T  S  *  S  C  H  Q  R  A  Y  K :   G  F  S  K  Y  R  *  T  K  Q  E  A  Q  A  D  Q  T  G  K  G  *  P  E   : G  S  *  R  *  V  S  E  Y  T  S  G  *  S  K  R  T  G  T  D  A  K  *  T  E  H  L  S  C  K  A  R  R  L  L  *  E  N  S  G  T  G  S  F  I  F  *  C  L  *  D  :  V  Q  K  K  E  R  K  R  I  I  *  D  A  A  Q  V  *  R  A  A  A  T  V  Q  P  C  K  *  K  G  T  *  S  I  C  K  L  Y  *  A  K  R  R  T  P  K  K  A  S  *  T  G  C  W  G  *   : E  N  Q  G  T  Y  I  C  F  G  Y  E  E  G  *  I  N  *  A  H  V  Q  G  C  G  *  T  F  P  *  S  I  L  S  A  C  T  R  R  S  R  V  L  S  Y  D  E  E  K   : G  W  *  G  R  *  Q  *  S  *  *  *  *  A  A  C  *  C  R  G  K  S  *  E  I  Y  W  C  E  S  E   : G  V  V  H  W  T  R  R  N  T  V  N  E  T  V  I  R  G  P  E  N  C  G  S  T  G  T  Y  I  C  H  T  K  M  *  S  C  P  I  L  S  F  *  *  D  R  C  S  T  R  S  S  V  Q  N  S  R  G  E :   Y  G  S  *  F  G  R  Q  G  *  H  A  I  Y  H  D  D  I  S  P  G  A  R  E  G  G  *  *  D  I  *  C  E  P  Q  K  *  S  *  Q  G  H  C  C  I  Q  G  R  S  L  R  F  Y  *  A  G  S  V  T  *  L  T  E  :  S  H  K  R  G  V  E  G  W  *  K  K  L  F  C  Y  C  A  A  C  Y  C  *  *  F  V  V  G  Y  A  E  S  L  V  V  K  Y  *  C  *  C  L  M  Y  V  M  G  V  D  F  C  K  C  R  K  L  Y  *  C  N  V  Y  F  I  Q  L  H  L  L  I  Y  H  I  Y  I  Y  I  Y  I  I  L  Y  Y  K  *  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41654" stop="41520"/>
                    <exon start="41440" stop="41249"/>
                    <exon start="41166" stop="40983"/>
                    <exon start="40903" stop="40833"/>
                    <exon start="40758" stop="40607"/>
                    <exon start="39338" stop="39170"/>
                    <exon start="39068" stop="38922"/>
                    <exon start="36902" stop="36810"/>
                    <exon start="36597" stop="36423"/>
                    <exon start="36340" stop="36156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NELVAEQQKNDAGLGHDKSELEQLKQDILNAERQKQSILKALQKKEKLLGNILSQIDQLRASIAMKQDEMGTELVDHLTPEERDSLSRLNPEITALKEQLIACRANRIETETRKEELEMNLSTNLERRKQELMAMNSSVDVDMLQAEVESKYQELKDADSLVDHVTKELTRVSRNIDERNKRLKQIKQEKDNLKALEDKYQNTLQDEARELEQMLSKRNTYLAKQEDYSKKIRELGPLSSDAFETYKRKNVKELYKMLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDMRKDESIERTFKGVAKHFREVFSQLVQGGHGFLVMMKKKDGEEDDNDPDDDEPRADAEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMVRDLADRGSTQFITTTFRPELVKVADKIYSVSHKNRVSKVTVVSREGALDFIEQDQSHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41654" e_stop="41520"/>
            <exon e_start="41440" e_stop="41249"/>
            <exon e_start="41166" e_stop="40983"/>
            <exon e_start="40903" e_stop="40833"/>
            <exon e_start="40758" e_stop="40607"/>
            <exon e_start="39338" e_stop="39170"/>
            <exon e_start="39068" e_stop="38922"/>
            <exon e_start="36902" e_stop="36810"/>
            <exon e_start="36597" e_stop="36423"/>
            <exon e_start="36340" e_stop="36151"/>
            <exon e_start="36057" e_stop="35844"/>
            <exon e_start="29976" e_stop="29909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.970"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.782" e_score="0.976"/>
          <exon-intron don_prob="0.946" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.987" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="41654" e_stop="41520" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41519" i_stop="41441" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41440" e_stop="41249" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41248" i_stop="41167" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41166" e_stop="40983" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.667">
            <gDNA_intron_boundary i_start="40982" i_stop="40904" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40903" e_stop="40833" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40832" i_stop="40759" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40758" e_stop="40607" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.722" acc_prob="0.984">
            <gDNA_intron_boundary i_start="40606" i_stop="39339" i_length="1268"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="39338" e_stop="39170" e_length="169"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.782">
            <gDNA_intron_boundary i_start="39169" i_stop="39069" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39068" e_stop="38922" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.946" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38921" i_stop="36903" i_length="2019"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36902" e_stop="36810" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36809" i_stop="36598" i_length="212"/>
          </intron>
          <exon e_serial="9" e_score="0.994">
            <gDNA_exon_boundary e_start="36597" e_stop="36423" e_length="175"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36422" i_stop="36341" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="36340" e_stop="36151" e_length="190"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="36150" i_stop="36058" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="0.944">
            <gDNA_exon_boundary e_start="36057" e_stop="35844" e_length="214"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35843" i_stop="29977" i_length="5867"/>
          </intron>
          <exon e_serial="12" e_score="0.912">
            <gDNA_exon_boundary e_start="29976" e_stop="29909" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41654" stop="41520"/>
              <exon start="41440" stop="41340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41400" stop="41249"/>
              <exon start="41166" stop="40983"/>
              <exon start="40903" stop="40833"/>
              <exon start="40758" stop="40607"/>
              <exon start="39338" stop="39170"/>
              <exon start="39068" stop="39059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39170"/>
              <exon start="39068" stop="38922"/>
              <exon start="36902" stop="36810"/>
              <exon start="36597" stop="36466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36902" stop="36810"/>
              <exon start="36597" stop="36423"/>
              <exon start="36340" stop="36211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36329" stop="36151"/>
              <exon start="36057" stop="35844"/>
              <exon start="29976" stop="29909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAACTTGTGGCTGAGCAGCAGAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGAAACAATCCATCTTAAAAGCTCTTCAAAAGAAG : GAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAG : ACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAA : GGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAG : GCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGAC : GTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG : AAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAG : GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG : GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA : ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG : TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATC : TAGTATATATATATATATATATGAACAGAGATAGCTTTGGTTGTTCATCTGTTTCATAGTATTCAAAA</gDNA_template>
            <first_frame> N  E  L  V  A  E  Q  Q  K  N  D  A  G  L  G  H  D  K  S  E  L  E  Q  L  K  Q  D  I  L  N  A  E  R  Q  K  Q  S  I  L  K  A  L  Q  K  K  :  E  K  L  L  G  N  I  L  S  Q  I  D  Q  L  R  A  S  I  A  M  K  Q  D  E  M  G  T  E  L  V  D  H  L  T  P  E  E  R  D  S  L  S  R  L  N  P  E  I  T  A  L  K  E  Q  L  I  A  C  R  A  N  R  I  E  :  T  E  T  R  K  E  E  L  E  M  N  L  S  T  N  L  E  R  R  K  Q  E  L  M  A  M  N  S  S  V  D  V  D  M  L  Q  A  E  V  E  S  K  Y  Q  E  L  K  D  A  D  S  L  V  D  H  V  T  K  E  L  T   : R  V  S  R  N  I  D  E  R  N  K  R  L  K  Q  I  K  Q  E  K  D  N  L  K  :  A  L  E  D  K  Y  Q  N  T  L  Q  D  E  A  R  E  L  E  Q  M  L  S  K  R  N  T  Y  L  A  K  Q  E  D  Y  S  K  K  I  R  E  L  G  P  L  S  S  D  A  F  E  T :   Y  K  R  K  N  V  K  E  L  Y  K  M  L  H  K  C  N  E  Q  L  Q  Q  F  S  H  V  N  K  K  A  L  D  Q  Y  V  N  F  T  E  Q  R  E  E  L  Q  R  R  Q  A  E  L  D  A  G  D  E  :  K  I  K  E  L  I  S  V  L  D  M  R  K  D  E  S  I  E  R  T  F  K  G  V  A  K  H  F  R  E  V  F  S  Q  L  V  Q  G  G  H  G  F  L  V  M  M  K  K  K  :  D  G  E  E  D  D  N  D  P  D  D  D  E  P  R  A  D  A  E  G  R  V  E  K  Y  I  G  V  K  V  K  :  V  S  F  T  G  Q  G  E  T  Q  S  M  K  Q  L  S  G  G  Q  K  T  V  V  A  L  A  L  I  F  A  I  Q  R  C  D  P  A  P  F  Y  L  F  D  E  I  D  A  A  L  D  P  Q  Y  R  T  A  V  G   : N  M  V  R  D  L  A  D  R  G  S  T  Q  F  I  T  T  T  F  R  P  E  L  V  K  V  A  D  K  I  Y  S  V  S  H  K  N  R  V  S  K  V  T  V  V  S  R  E  G  A  L  D  F  I  E  Q  D  Q  S  H  N  *  L  S :   R  T  R  E  V  W  R  A  G  E  R  S  F  S  A  T  A  L  L  V  I  A  D  D  S  L  W  D  M  L  N  R  W  L  *  N  I  D  A  N  V  *  C  M  L  W  V  L  I  S  V  N  V  E  N  F  I  D  V  T  S  T  S  Y  S  C  T  Y  *  Y  I  :  *  Y  I  Y  I  Y  I  *  T  E  I  A  L  V  V  H  L  F  H  S  I  Q   </first_frame>
            <second_frame>  M  N  L  W  L  S  S  R  K  M  M  L  A  W  V  T  T  S  L  S  *  N  S  L  N  K  T  F  L  M  L  K  D  R  N  N  P  S  *  K  L  F  K  R  R :   R  N  C  L  V  I  F  *  V  K  *  I  S  S  E  L  V  *  L  *  N  K  M  K  W  E  Q  N  L  L  I  I  *  R  R  K  S  E  I  L  C  H  V  *  T  L  K  S  R  P  *  R  S  S  *  L  L  A  G  Q  I  G  *  R :   L  K  L  E  K  R  S  L  R  *  I  C  Q  Q  I  L  K  D  E  S  K  S  *  W  R  *  I  L  L  S  T  L  I  C  Y  R  L  K  L  R  A  S  I  R  N  S  R  M  R  T  H  *  L  I  M  S  P  K  S  L  Q  :  G  F  L  E  I  *  M  N  E  T  R  G  S  S  R  S  N  R  K  R  I  T  *  R :   L  L  K  I  S  I  R  I  H  F  R  M  K  Q  E  N  W  N  R  C  *  V  N  G  T  P  I  L  Q  S  K  K  I  T  L  R  K  F  G  N  W  V  L  Y  L  L  M  P  L  R   : R  T  K  E  R  T  *  K  N  Y  I  R  C  C  T  S  V  T  S  S  C  N  S  S  A  M  *  I  K  R  H  L  I  N  M  *  T  L  L  S  K  E  K  N  S  K  E  G  K  L  N  W  M  L  G  M  R :   K  S  R  N  L  Y  L  F  W  I  *  G  R  M  N  Q  L  S  A  R  S  R  V  W  L  N  I  S  V  K  Y  S  L  S  L  Y  K  E  V  T  G  S  *  L  *  *  R  K  R :   M  V  R  K  M  T  M  I  L  M  M  M  S  R  V  L  M  Q  R  E  E  L  R  N  I  L  V  *  K  *  R :   C  R  S  L  D  K  E  K  H  S  Q  *  N  S  Y  Q  G  A  R  K  L  W  *  H  W  H  L  Y  L  P  Y  K  D  V  I  L  P  H  F  I  F  L  M  R  *  M  Q  H  *  I  L  S  T  E  Q  P  W  G  :  I  W  F  V  I  W  Q  T  G  V  A  R  N  L  S  R  R  H  F  A  R  S  S  *  R  W  L  I  R  Y  I  V  *  A  T  K  I  E  L  A  R  S  L  L  Y  P  G  K  E  P  *  I  L  L  S  R  I  S  H  I  T  D  *   : V  A  Q  E  R  C  G  G  L  V  K  E  A  F  L  L  L  R  C  L  L  L  L  M  I  R  C  G  I  C  *  I  V  G  C  E  I  L  M  L  M  F  N  V  C  Y  G  C  *  F  L  *  M  *  K  T  L  L  M  *  R  L  L  H  T  A  A  L  I  N  I  S :   S  I  Y  I  Y  I  Y  E  Q  R  *  L  W  L  F  I  C  F  I  V  F  K  </second_frame>
            <third_frame>   *  T  C  G  *  A  A  E  K  *  C  W  P  G  S  R  Q  V  *  V  R  T  A  *  T  R  H  S  *  C  *  K  T  E  T  I  H  L  K  S  S  S  K  E   : G  E  T  A  W  *  Y  S  E  S  N  R  S  A  Q  S  *  Y  S  Y  E  T  R  *  N  G  N  R  T  C  *  S  F  N  A  G  R  A  R  F  F  V  T  F  E  P  *  N  H  G  P  E  G  A  A  D  C  L  Q  G  K  S  D  R   : D  *  N  *  K  R  G  A  *  D  E  S  V  N  K  S  *  K  T  K  A  R  V  N  G  D  E  F  F  C  R  R  *  Y  A  T  G  *  S  *  E  Q  V  S  G  T  Q  G  C  G  L  T  S  *  S  C  H  Q  R  A  Y  K :   G  F  S  K  Y  R  *  T  K  Q  E  A  Q  A  D  Q  T  G  K  G  *  P  E   : G  S  *  R  *  V  S  E  Y  T  S  G  *  S  K  R  T  G  T  D  A  K  *  T  E  H  L  S  C  K  A  R  R  L  L  *  E  N  S  G  T  G  S  F  I  F  *  C  L  *  D  :  V  Q  K  K  E  R  K  R  I  I  *  D  A  A  Q  V  *  R  A  A  A  T  V  Q  P  C  K  *  K  G  T  *  S  I  C  K  L  Y  *  A  K  R  R  T  P  K  K  A  S  *  T  G  C  W  G  *   : E  N  Q  G  T  Y  I  C  F  G  Y  E  E  G  *  I  N  *  A  H  V  Q  G  C  G  *  T  F  P  *  S  I  L  S  A  C  T  R  R  S  R  V  L  S  Y  D  E  E  K   : G  W  *  G  R  *  Q  *  S  *  *  *  *  A  A  C  *  C  R  G  K  S  *  E  I  Y  W  C  E  S  E   : G  V  V  H  W  T  R  R  N  T  V  N  E  T  V  I  R  G  P  E  N  C  G  S  T  G  T  Y  I  C  H  T  K  M  *  S  C  P  I  L  S  F  *  *  D  R  C  S  T  R  S  S  V  Q  N  S  R  G  E :   Y  G  S  *  F  G  R  Q  G  *  H  A  I  Y  H  D  D  I  S  P  G  A  R  E  G  G  *  *  D  I  *  C  E  P  Q  K  *  S  *  Q  G  H  C  C  I  Q  G  R  S  L  R  F  Y  *  A  G  S  V  T  *  L  T  E  :  S  H  K  R  G  V  E  G  W  *  K  K  L  F  C  Y  C  A  A  C  Y  C  *  *  F  V  V  G  Y  A  E  S  L  V  V  K  Y  *  C  *  C  L  M  Y  V  M  G  V  D  F  C  K  C  R  K  L  Y  *  C  N  V  Y  F  I  Q  L  H  L  L  I  Y   : L  V  Y  I  Y  I  Y  M  N  R  D  S  F  G  C  S  S  V  S  *  Y  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41654" stop="41520"/>
                    <exon start="41440" stop="41249"/>
                    <exon start="41166" stop="40983"/>
                    <exon start="40903" stop="40833"/>
                    <exon start="40758" stop="40607"/>
                    <exon start="39338" stop="39170"/>
                    <exon start="39068" stop="38922"/>
                    <exon start="36902" stop="36810"/>
                    <exon start="36597" stop="36423"/>
                    <exon start="36340" stop="36156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NELVAEQQKNDAGLGHDKSELEQLKQDILNAERQKQSILKALQKKEKLLGNILSQIDQLRASIAMKQDEMGTELVDHLTPEERDSLSRLNPEITALKEQLIACRANRIETETRKEELEMNLSTNLERRKQELMAMNSSVDVDMLQAEVESKYQELKDADSLVDHVTKELTRVSRNIDERNKRLKQIKQEKDNLKALEDKYQNTLQDEARELEQMLSKRNTYLAKQEDYSKKIRELGPLSSDAFETYKRKNVKELYKMLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDMRKDESIERTFKGVAKHFREVFSQLVQGGHGFLVMMKKKDGEEDDNDPDDDEPRADAEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMVRDLADRGSTQFITTTFRPELVKVADKIYSVSHKNRVSKVTVVSREGALDFIEQDQSHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60286" PGL_stop="57493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60286" e_stop="60142"/>
            <exon e_start="60037" e_stop="59937"/>
            <exon e_start="58983" e_stop="58839"/>
            <exon e_start="58764" e_stop="58675"/>
            <exon e_start="58589" e_stop="58255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60286" e_stop="60142" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59937" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58983" e_stop="58839" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.687">
            <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58764" e_stop="58675" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58589" e_stop="58255" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60286" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60277" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60263" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60262" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60262" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60261" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60259" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60254" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60254" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60253" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60253" stop="60142"/>
              <exon start="60037" stop="59991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60251" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60251" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60247" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60247" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60246" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60244" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60244" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60242" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60242" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60240" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60239" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60239" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60238" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60238" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60235" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60226" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60220" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60215" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60209" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403037" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60209" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433271" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60194" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60184" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60178" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416605" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60025" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60023" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60022" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59957" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58917" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58909" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58909" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58908" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58897" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58885" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58851" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416535" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58849" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACGAGTCCATTACTCTCCACTGCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCTA</gDNA_template>
            <first_frame> P  R  V  H  Y  S  P  L  Q  I  R  V  F  A  T  E  P  L  S  P  F  S  S  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  E  C  F  Y  F  D  V  Y  I  *  K  *  C  Q  G  I  S  A  F  A  E  F  *  S  S  L  I  F  L  F  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P  I  E  I  *  A  H  I  C  T  V  H  L  V  R  G  L  V  L  E  P  S  L  K  K  K  S  T  Y  G  D  F  S  L </first_frame>
            <second_frame>  H  E  S  I  T  L  H  C  K  L  G  F  L  L  P  S  L  C  R  R  S  V  H  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  S  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  F  S  L  H  *  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  L  R  F  E  P  I  Y  V  L  F  I  L  *  E  V  W  C  L  N  L  L  *  K  K  K  V  L  M  V  I  L  V   </second_frame>
            <third_frame>   T  S  P  L  L  S  T  A  N  *  G  F  C  Y  R  A  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  V  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  D  I  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  Y  *  D  L  S  P  Y  M  Y  C  S  S  C  E  R  F  G  A  *  T  F  F  K  K  K  K  Y  L  W  *  F  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60254" stop="60142"/>
                    <exon start="60037" stop="59937"/>
                    <exon start="58983" stop="58839"/>
                    <exon start="58764" stop="58675"/>
                    <exon start="58589" stop="58499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCYRAFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60263" e_stop="60142"/>
            <exon e_start="60037" e_stop="59937"/>
            <exon e_start="58983" e_stop="58839"/>
            <exon e_start="58764" e_stop="58675"/>
            <exon e_start="58589" e_stop="58357"/>
            <exon e_start="57526" e_stop="57493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.765" e_score="1.000"/>
          <exon-only e_score="0.529"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60263" e_stop="60142" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59937" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58983" e_stop="58839" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.687">
            <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58764" e_stop="58675" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58589" e_stop="58357" e_length="233"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.765">
            <gDNA_intron_boundary i_start="58356" i_stop="57527" i_length="830"/>
          </intron>
          <exon e_serial="6" e_score="0.529">
            <gDNA_exon_boundary e_start="57526" e_stop="57493" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60263" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60262" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60262" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60261" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60259" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60254" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60253" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60253" stop="60142"/>
              <exon start="60037" stop="59991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60251" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60251" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60247" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60247" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60244" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60244" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60242" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60242" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60240" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60239" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60239" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60238" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60238" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60235" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60220" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60194" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60184" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60022" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59957" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58897" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58885" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58760" stop="58675"/>
              <exon start="58589" stop="58357"/>
              <exon start="57526" stop="57493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTT : AATCATTACACGTGAGAAATATAAAACTAAGACA</gDNA_template>
            <first_frame> A  N  *  G  F  C  Y  R  A  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  V  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  D  I  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L   : *  S  L  H  V  R  N  I  K  L  R   </first_frame>
            <second_frame>  Q  I  R  V  F  A  T  E  P  L  S  P  F  S  S  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  E  C  F  Y  F  D  V  Y  I  *  K  *  C  Q  G  I  S  A  F  A  E  F  *  S  S  L  I  F  L  F  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  :  N  H  Y  T  *  E  I  *  N  *  D  </second_frame>
            <third_frame>   K  L  G  F  L  L  P  S  L  C  R  R  S  V  H  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  S  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  F  S  L  H  *  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  L :   I  I  T  R  E  K  Y  K  T  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60254" stop="60142"/>
                    <exon start="60037" stop="59937"/>
                    <exon start="58983" stop="58839"/>
                    <exon start="58764" stop="58675"/>
                    <exon start="58589" stop="58499"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCYRAFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60262" e_stop="60142"/>
            <exon e_start="60037" e_stop="59937"/>
            <exon e_start="58983" e_stop="58839"/>
            <exon e_start="58764" e_stop="58675"/>
            <exon e_start="58589" e_stop="58452"/>
            <exon e_start="58224" e_stop="58191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.005" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.676"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60262" e_stop="60142" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="60141" i_stop="60038" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59937" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59936" i_stop="58984" i_length="953"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58983" e_stop="58839" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.687">
            <gDNA_intron_boundary i_start="58838" i_stop="58765" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58764" e_stop="58675" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58674" i_stop="58590" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58589" e_stop="58452" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.005" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58451" i_stop="58225" i_length="227"/>
          </intron>
          <exon e_serial="6" e_score="0.676">
            <gDNA_exon_boundary e_start="58224" e_stop="58191" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60262" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60261" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60253" stop="60142"/>
              <exon start="60037" stop="59991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60251" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60247" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60247" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60244" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60244" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60242" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60242" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60240" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60239" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60239" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60238" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60238" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60232" stop="60142"/>
              <exon start="60037" stop="59973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60220" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60213" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58452"/>
              <exon start="58224" stop="58191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596080" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60184" stop="60142"/>
              <exon start="60037" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60022" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59957" stop="59937"/>
              <exon start="58983" stop="58839"/>
              <exon start="58764" stop="58689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58885" stop="58839"/>
              <exon start="58764" stop="58675"/>
              <exon start="58589" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAG : TAAAGCAGATTTTCTTTGTTCTAAAAAAAGAAAC</gDNA_template>
            <first_frame> Q  I  R  V  F  A  T  E  P  L  S  P  F  S  S  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  E  C  F  Y  F  D  V  Y  I  *  K  *  C  Q   : V  K  Q  I  F  F  V  L  K  K  E   </first_frame>
            <second_frame>  K  L  G  F  L  L  P  S  L  C  R  R  S  V  H  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  S  V  S  I  L  M  F  T  S  R  N  D  V  K  :  *  S  R  F  S  L  F  *  K  K  K  </second_frame>
            <third_frame>   N  *  G  F  C  Y  R  A  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  V  F  L  F  *  C  L  H  L  E  M  M  S  S :   K  A  D  F  L  C  S  K  K  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60254" stop="60142"/>
                    <exon start="60037" stop="59937"/>
                    <exon start="58983" stop="58839"/>
                    <exon start="58764" stop="58675"/>
                    <exon start="58589" stop="58499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCYRAFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58263" PGL_stop="58581"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58263" e_stop="58581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="58263" e_stop="58581" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58263" stop="58581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58274" stop="58572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCACCATAAGTACTTTTTTTTTTTAAAGAAGGTTCAAGCACCAAACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCACAGTTTTGG</gDNA_template>
            <first_frame> N  H  H  K  Y  F  F  F  L  K  K  V  Q  A  P  N  L  S  Q  D  E  Q  Y  I  Y  G  L  K  S  Q  *  E  R  K  A  C  Y  Y  *  H  K  V  S  K  F  E  S  Q  K  G  I  S  M  K  T  K  I  Q  Q  K  Q  I  C  L  D  I  I  S  R  C  K  H  Q  N  R  N  T  Q  V  H  I  P  V  K  A  F  F  P  T  P  P  E  P  A  G  I  T  F  N  T  L  N  L  T  V  L  </first_frame>
            <second_frame>  I  T  I  S  T  F  F  F  *  R  R  F  K  H  Q  T  S  H  K  M  N  S  T  Y  M  G  S  N  L  N  R  K  E  K  L  V  T  T  S  I  K  F  Q  N  L  N  L  K  K  E  Y  Q  *  R  L  K  F  S  K  S  R  Y  A  L  T  S  F  L  D  V  N  I  K  I  E  T  L  K  F  T  F  R  *  K  L  F  S  Q  H  H  Q  N  R  L  E  S  P  S  I  H  *  T  S  Q  F  W </second_frame>
            <third_frame>   S  P  *  V  L  F  F  F  K  E  G  S  S  T  K  P  L  T  R  *  T  V  H  I  W  A  Q  I  S  I  G  K  K  S  L  L  L  L  A  *  S  F  K  I  *  I  S  K  R  N  I  N  E  D  *  N  S  A  K  A  D  M  P  *  H  H  F  *  M  *  T  S  K  *  K  H  S  S  S  H  S  G  K  S  F  F  P  N  T  T  R  T  G  W  N  H  L  Q  Y  I  E  P  H  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58380" stop="58580"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKVSKFESQKGISMKTKIQQKQICLDIISRCKHQNRNTQVHIPVKAFFPTPPEPAGITFNTLNLTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63586" PGL_stop="61005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63586" e_stop="63452"/>
            <exon e_start="63347" e_stop="63247"/>
            <exon e_start="62302" e_stop="62158"/>
            <exon e_start="62081" e_stop="61992"/>
            <exon e_start="61906" e_stop="61607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63586" e_stop="63452" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.967">
            <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63347" e_stop="63247" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62302" e_stop="62158" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.872">
            <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62081" e_stop="61992" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61906" e_stop="61607" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63586" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63574" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63569" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63568" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63567" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63565" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63564" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63564" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="62003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63560" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63560" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63551" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="62004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63549" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63549" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63542" stop="63452"/>
              <exon start="63347" stop="63283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63540" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63540" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63537" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63531" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63512" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63510" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62301" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62297" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62283" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62225" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62074" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTT</gDNA_template>
            <first_frame> I  A  L  H  C  I  L  G  F  S  L  Q  S  I  R  R  R  S  V  Y  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  P  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  D  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  *  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  P  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  I  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  S  S  L  H  L  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  L  R  F  E  P  I  Y  L  L  F  I  L  *  *  V  W  C  L  N  L  L </first_frame>
            <second_frame>  L  L  S  T  A  Y  *  G  F  R  Y  R  V  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  L  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  Y  T  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  Y  *  D  L  S  P  Y  I  Y  C  S  S  C  D  R  S  G  A  *  T  F   </second_frame>
            <third_frame>   C  S  P  L  H  I  R  V  F  A  T  E  Y  S  S  P  F  S  L  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  A  V  S  L  L  V  H  A  T  V  L  R  *  T  G  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  M  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  A  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  D  C  F  Y  F  N  V  Y  I  *  K  *  C  Q  G  I  F  A  F  A  E  F  *  S  S  F  I  L  L  S  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P  I  E  I  *  A  H  I  F  T  V  H  L  V  I  G  L  V  L  E  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63564" stop="63452"/>
                    <exon start="63347" stop="63247"/>
                    <exon start="62302" stop="62158"/>
                    <exon start="62081" stop="61992"/>
                    <exon start="61906" stop="61816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRYRVFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63584" e_stop="63452"/>
            <exon e_start="63347" e_stop="63247"/>
            <exon e_start="62302" e_stop="62158"/>
            <exon e_start="62081" e_stop="61992"/>
            <exon e_start="61906" e_stop="61670"/>
            <exon e_start="61046" e_stop="61009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.295" e_score="1.000"/>
          <exon-only e_score="0.553"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63584" e_stop="63452" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.967">
            <gDNA_intron_boundary i_start="63451" i_stop="63348" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63347" e_stop="63247" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62302" e_stop="62158" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.872">
            <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62081" e_stop="61992" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61906" e_stop="61670" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.295">
            <gDNA_intron_boundary i_start="61669" i_stop="61047" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="0.553">
            <gDNA_exon_boundary e_start="61046" e_stop="61009" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63574" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63565" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63564" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="62003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63560" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63560" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63551" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="62004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63549" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63542" stop="63452"/>
              <exon start="63347" stop="63283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63540" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63540" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63531" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63512" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63510" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63462" stop="63452"/>
              <exon start="63347" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61670"/>
              <exon start="61046" stop="61009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62301" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTA : AATCATACACGTGAGAAATATAAAACTAAGACATAAGA</gDNA_template>
            <first_frame> C  S  P  L  H  I  R  V  F  A  T  E  Y  S  S  P  F  S  L  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  A  V  S  L  L  V  H  A  T  V  L  R  *  T  G  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  M  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  A  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  D  C  F  Y  F  N  V  Y  I  *  K  *  C  Q  G  I  F  A  F  A  E  F  *  S  S  F  I  L  L  S  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P   : K  S  Y  T  *  E  I  *  N  *  D  I  R </first_frame>
            <second_frame>  A  L  H  C  I  L  G  F  S  L  Q  S  I  R  R  R  S  V  Y  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  P  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  D  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  *  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  P  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  I  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  S  S  L  H  L  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  :  N  H  T  R  E  K  Y  K  T  K  T  *   </second_frame>
            <third_frame>   L  S  T  A  Y  *  G  F  R  Y  R  V  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  L  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  Y  T  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  * :   I  I  H  V  R  N  I  K  L  R  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63564" stop="63452"/>
                    <exon start="63347" stop="63247"/>
                    <exon start="62302" stop="62158"/>
                    <exon start="62081" stop="61992"/>
                    <exon start="61906" stop="61816"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRYRVFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63561" e_stop="63247"/>
            <exon e_start="62302" e_stop="62158"/>
            <exon e_start="62081" e_stop="61992"/>
            <exon e_start="61906" e_stop="61665"/>
            <exon e_start="61174" e_stop="61163"/>
            <exon e_start="61046" e_stop="61005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.501" acc_prob="0.295" e_score="0.667"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63561" e_stop="63247" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="63246" i_stop="62303" i_length="944"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62302" e_stop="62158" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.872">
            <gDNA_intron_boundary i_start="62157" i_stop="62082" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62081" e_stop="61992" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61991" i_stop="61907" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="61906" e_stop="61665" e_length="242"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61664" i_stop="61175" i_length="490"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="61174" e_stop="61163" e_length="12"/>
          </exon>
          <intron i_serial="5" don_prob="0.501" acc_prob="0.295">
            <gDNA_intron_boundary i_start="61162" i_stop="61047" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="61046" e_stop="61005" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63561" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63560" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="62003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63448" stop="63247"/>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
              <exon start="61174" stop="61163"/>
              <exon start="61046" stop="61005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62302" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62301" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62283" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62225" stop="62158"/>
              <exon start="62081" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62074" stop="61992"/>
              <exon start="61906" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG : ACAATAAAGAGA : AATCATACACGTGAGAAATATAAAACTAAGACATAAGAGATA</gDNA_template>
            <first_frame> F  R  Y  R  V  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  R  *  V  L  *  L  M  L  H  A  F  S  V  Q  V  R  *  L  R  G  I  *  G  *  D  L  R  F  V  V  Y  M  I  W  A  A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  A  V  S  L  L  V  H  A  T  V  L  R  *  T  G  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  M  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  A  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  D  C  F  Y  F  N  V  Y  I  *  K  *  C  Q  G  I  F  A  F  A  E  F  *  S  S  F  I  L  L  S  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P  I  E  :  T  I  K  R  :  N  H  T  R  E  K  Y  K  T  K  T  *  E  I </first_frame>
            <second_frame>  F  A  T  E  Y  S  S  P  F  S  L  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *  G  E  C  C  D  *  C  Y  M  L  F  L  F  K  S  V  S  *  E  E  F  E  V  K  I  C  V  L  L  F  I  *  F  G  Q  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  P  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  D  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  *  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  P  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  I  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  S  S  L  H  L  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  L  R :   Q  *  R  E :   I  I  H  V  R  N  I  K  L  R  H  K  R   </second_frame>
            <third_frame>   S  L  Q  S  I  R  R  R  S  V  Y  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  V  S  V  V  T  D  A  T  C  F  F  C  S  S  P  L  V  E  R  N  L  R  L  R  F  A  F  C  C  L  Y  D  L  G  S  S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  L  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  Y  T  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  Y  *   : D  N  K  E   : K  S  Y  T  *  E  I  *  N  *  D  I  R  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63559" stop="63247"/>
                    <exon start="62302" stop="62158"/>
                    <exon start="62081" stop="61992"/>
                    <exon start="61906" stop="61816"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQSIRRRSVYLHLQTLNHGGADGEGVFEAARCFSKVSVVTDATCFFCSSPLVERNLRLRFAFCCLYDLGSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64388" PGL_stop="64565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64388" e_stop="64565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="64388" e_stop="64565" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64388" stop="64565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCGTCAAGTTGTACACAATAGAAAGACATGTTCGAATTATCCTGTGCAAAAACAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACACGTTTTCTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGGTTTCGTAAAAAATTGTCAT</gDNA_template>
            <first_frame> C  R  Q  V  V  H  N  R  K  T  C  S  N  Y  P  V  Q  K  Q  *  F  R  N  V  T  F  V  I  V  L  F  *  M  L  E  T  R  F  L  L  L  S  A  V  V  I  I  D  I  Y  K  V  W  F  R  K  K  L  S  </first_frame>
            <second_frame>  A  V  K  L  Y  T  I  E  R  H  V  R  I  I  L  C  K  N  N  D  F  V  M  L  H  L  L  L  C  C  F  E  C  *  K  H  V  F  F  Y  *  V  Q  L  L  S  L  T  F  I  K  F  G  F  V  K  N  C  H </second_frame>
            <third_frame>   P  S  S  C  T  Q  *  K  D  M  F  E  L  S  C  A  K  T  M  I  S  *  C  Y  I  C  Y  C  V  V  L  N  V  R  N  T  F  S  F  I  E  C  S  C  Y  H  *  H  L  *  S  L  V  S  *  K  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0203N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="67485" PGL_stop="66460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67485" e_stop="67406"/>
            <exon e_start="67261" e_stop="66460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.988"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="67485" e_stop="67406" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67405" i_stop="67262" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="67261" e_stop="66460" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67485" stop="67406"/>
              <exon start="67261" stop="66753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67081" stop="66460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGTACTGGGTCACTTAATCCCTGCTATAGATGTGGTGAAGAAGGTCATTTTGCACGCGAATGTACTAATCCCAGCAGA : GTCAATAAGCGGAAACATGAATTATCAACCCCCAAGAAGAAAGTCCCCAAGAAAAGAAATGAGCAAAAAGAGTTCAAGTCTGTACCTCGTGATTTTGGTAGGGCATGGAAGAAGAAAGGAAAAACTGAAGGCGGATATACGTCGGGCTATAAGGTGAAACGAAGGGGCGGTTGGGTCCCGGATGATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATTGTTACTCATGTGTAATATAAAGGTCTGAGAACTGGTCATAATTCACAGAGACTGGTTGCACAAGCTCATTAGTTCATCAGGGACTTTATGGTGGTTTGTTCAATGAGTGTGGAACTGAGGTCGATCTCATCATATGTAGTTCCCTGTCATTTCTGTTTGTAATTTGTTATGTCTTTTGTTCCCTGATGCATCTTAATTGAATTGTTACTCTTCTTTTTGCCTGAGAGGCATGTAACTTTAAAAAGTACAAGTTAAACTGCCAGCTGAAATGCAATTTCTAATTTATTTTTGAG</gDNA_template>
            <first_frame> A  V  L  G  H  L  I  P  A  I  D  V  V  K  K  V  I  L  H  A  N  V  L  I  P  A  E :   S  I  S  G  N  M  N  Y  Q  P  P  R  R  K  S  P  R  K  E  M  S  K  K  S  S  S  L  Y  L  V  I  L  V  G  H  G  R  R  K  E  K  L  K  A  D  I  R  R  A  I  R  *  N  E  G  A  V  G  S  R  M  I  L  K  T  I  P  N  L  I  I  G  D  L  L  R  L  L  E  T  R  E  L  R  F  R  T  P  V  L  V  V  M  L  L  F  P  V  H  P  E  S  P  T  G  L  I  L  I  I  P  L  L  M  G  Q  A  I  I  I  T  I  D  F  Q  H  P  V  I  L  I  I  Q  L  L  M  G  H  A  N  I  S  I  T  I  G  R  Q  H  R  D  L  V  T  V  A  V  V  G  G  E  E  I  M  T  G  S  R  H  C  Y  S  C  V  I  *  R  S  E  N  W  S  *  F  T  E  T  G  C  T  S  S  L  V  H  Q  G  L  Y  G  G  L  F  N  E  C  G  T  E  V  D  L  I  I  C  S  S  L  S  F  L  F  V  I  C  Y  V  F  C  S  L  M  H  L  N  *  I  V  T  L  L  F  A  *  E  A  C  N  F  K  K  Y  K  L  N  C  Q  L  K  C  N  F  *  F  I  F  E </first_frame>
            <second_frame>  L  Y  W  V  T  *  S  L  L  *  M  W  *  R  R  S  F  C  T  R  M  Y  *  S  Q  Q   : S  Q  *  A  E  T  *  I  I  N  P  Q  E  E  S  P  Q  E  K  K  *  A  K  R  V  Q  V  C  T  S  *  F  W  *  G  M  E  E  E  R  K  N  *  R  R  I  Y  V  G  L  *  G  E  T  K  G  R  L  G  P  G  *  S  *  R  L  S  P  I  *  *  L  E  I  S  F  D  S  *  K  Q  E  S  *  D  F  E  L  Q  F  W  W  S  C  F  C  F  P  F  I  Q  K  V  Q  Q  A  *  F  *  *  F  R  F  L  W  V  R  Q  L  S  S  P  *  I  F  N  I  R  *  F  *  S  F  N  F  L  W  V  M  Q  I  S  A  L  P  *  V  V  S  I  A  I  W  *  Q  *  P  W  *  V  E  K  K  *  *  L  V  V  D  I  V  T  H  V  *  Y  K  G  L  R  T  G  H  N  S  Q  R  L  V  A  Q  A  H  *  F  I  R  D  F  M  V  V  C  S  M  S  V  E  L  R  S  I  S  S  Y  V  V  P  C  H  F  C  L  *  F  V  M  S  F  V  P  *  C  I  L  I  E  L  L  L  F  F  L  P  E  R  H  V  T  L  K  S  T  S  *  T  A  S  *  N  A  I  S  N  L  F  L   </second_frame>
            <third_frame>   C  T  G  S  L  N  P  C  Y  R  C  G  E  E  G  H  F  A  R  E  C  T  N  P  S  R  :  V  N  K  R  K  H  E  L  S  T  P  K  K  K  V  P  K  K  R  N  E  Q  K  E  F  K  S  V  P  R  D  F  G  R  A  W  K  K  K  G  K  T  E  G  G  Y  T  S  G  Y  K  V  K  R  R  G  G  W  V  P  D  D  L  E  D  Y  P  Q  S  N  N  W  R  S  P  S  T  P  R  N  K  R  A  K  I  S  N  S  S  S  G  G  H  A  S  V  S  R  S  S  R  K  S  N  R  L  D  F  D  N  S  A  S  Y  G  S  G  N  Y  H  H  H  R  F  S  T  S  G  D  F  D  H  S  T  S  Y  G  S  C  K  Y  Q  H  Y  H  R  S  S  A  S  R  F  G  N  S  S  R  G  R  W  R  R  N  N  D  W  *  *  T  L  L  L  M  C  N  I  K  V  *  E  L  V  I  I  H  R  D  W  L  H  K  L  I  S  S  S  G  T  L  W  W  F  V  Q  *  V  W  N  *  G  R  S  H  H  M  *  F  P  V  I  S  V  C  N  L  L  C  L  L  F  P  D  A  S  *  L  N  C  Y  S  S  F  C  L  R  G  M  *  L  *  K  V  Q  V  K  L  P  A  E  M  Q  F  L  I  Y  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67483" stop="67406"/>
                    <exon start="67261" stop="66761"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTGSLNPCYRCGEEGHFARECTNPSRVNKRKHELSTPKKKVPKKRNEQKEFKSVPRDFGRAWKKKGKTEGGYTSGYKVKRRGGWVPDDLEDYPQSNNWRSPSTPRNKRAKISNSSSGGHASVSRSSRKSNRLDFDNSASYGSGNYHHHRFSTSGDFDHSTSYGSCKYQHYHRSSASRFGNSSRGRWRRNNDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="68629" PGL_stop="67983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68629" e_stop="67983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="68629" e_stop="67983" e_length="647"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68629" stop="67983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGACTCCTTGACCAGTGAAGAGTGCCTCTCTTTTAAATGTTCTCCAAAGTCGTCAGGTCTTCTATGCTGACCTATTGTGCTATGCGTGTCCATTTCCTTAAAATAACATTTAATTATCTTTTAGCTTTCTGCAAAGCCTTTTTTAAATTTTTCCTTAGCAATTCCCTAGACCCTTGTGTGATGTATAGTTTGTACGAACTTGCCTAGTTCACCTGTGCTCAAGCATATGGTGCATTTTTTGGTCGACATAATTTTGAGTAATTGATAAAACTGTATAGCTGACCCCAAGTAGTATGAAATTGTGTAGATGCTGATTGCAGGACAGTATAATCATGCATATGCCATTGTAGCATCTTCGCTTCAATCAGGAAGCAAATTAAGCTTGTTTTTAGTTTGATAGGAATTTGGATAGGGTAAAATTATTACTTGCCATTGTAGCATGGTTCAGAGTTTTCTGTAGCTAGTGATGTCAGGCTTCATCCATAAGTTCTTCAACTATGTAGGTTACACAGGTGAACAAGGTAACACCCATGGGGGAGCAAAGTGAAATTGTGATTTTTCTTTTGGACCTTAAAACACACTATATTATTTCCATATTTTGGCGATAGACTGACAGAGTATGTTATGCACTCTGCTTTGTTTGAGC</gDNA_template>
            <first_frame> R  T  P  *  P  V  K  S  A  S  L  L  N  V  L  Q  S  R  Q  V  F  Y  A  D  L  L  C  Y  A  C  P  F  P  *  N  N  I  *  L  S  F  S  F  L  Q  S  L  F  *  I  F  P  *  Q  F  P  R  P  L  C  D  V  *  F  V  R  T  C  L  V  H  L  C  S  S  I  W  C  I  F  W  S  T  *  F  *  V  I  D  K  T  V  *  L  T  P  S  S  M  K  L  C  R  C  *  L  Q  D  S  I  I  M  H  M  P  L  *  H  L  R  F  N  Q  E  A  N  *  A  C  F  *  F  D  R  N  L  D  R  V  K  L  L  L  A  I  V  A  W  F  R  V  F  C  S  *  *  C  Q  A  S  S  I  S  S  S  T  M  *  V  T  Q  V  N  K  V  T  P  M  G  E  Q  S  E  I  V  I  F  L  L  D  L  K  T  H  Y  I  I  S  I  F  W  R  *  T  D  R  V  C  Y  A  L  C  F  V  *   </first_frame>
            <second_frame>  G  L  L  D  Q  *  R  V  P  L  F  *  M  F  S  K  V  V  R  S  S  M  L  T  Y  C  A  M  R  V  H  F  L  K  I  T  F  N  Y  L  L  A  F  C  K  A  F  F  K  F  F  L  S  N  S  L  D  P  C  V  M  Y  S  L  Y  E  L  A  *  F  T  C  A  Q  A  Y  G  A  F  F  G  R  H  N  F  E  *  L  I  K  L  Y  S  *  P  Q  V  V  *  N  C  V  D  A  D  C  R  T  V  *  S  C  I  C  H  C  S  I  F  A  S  I  R  K  Q  I  K  L  V  F  S  L  I  G  I  W  I  G  *  N  Y  Y  L  P  L  *  H  G  S  E  F  S  V  A  S  D  V  R  L  H  P  *  V  L  Q  L  C  R  L  H  R  *  T  R  *  H  P  W  G  S  K  V  K  L  *  F  F  F  W  T  L  K  H  T  I  L  F  P  Y  F  G  D  R  L  T  E  Y  V  M  H  S  A  L  F  E  </second_frame>
            <third_frame>   D  S  L  T  S  E  E  C  L  S  F  K  C  S  P  K  S  S  G  L  L  C  *  P  I  V  L  C  V  S  I  S  L  K  *  H  L  I  I  F  *  L  S  A  K  P  F  L  N  F  S  L  A  I  P  *  T  L  V  *  C  I  V  C  T  N  L  P  S  S  P  V  L  K  H  M  V  H  F  L  V  D  I  I  L  S  N  *  *  N  C  I  A  D  P  K  *  Y  E  I  V  *  M  L  I  A  G  Q  Y  N  H  A  Y  A  I  V  A  S  S  L  Q  S  G  S  K  L  S  L  F  L  V  *  *  E  F  G  *  G  K  I  I  T  C  H  C  S  M  V  Q  S  F  L  *  L  V  M  S  G  F  I  H  K  F  F  N  Y  V  G  Y  T  G  E  Q  G  N  T  H  G  G  A  K  *  N  C  D  F  S  F  G  P  *  N  T  L  Y  Y  F  H  I  L  A  I  D  *  Q  S  M  L  C  T  L  L  C  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0203N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="72606" PGL_stop="71912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72606" e_stop="72401"/>
            <exon e_start="72177" e_stop="71912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.928" e_score="0.942"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="72606" e_stop="72401" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.928">
            <gDNA_intron_boundary i_start="72400" i_stop="72178" i_length="223"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="72177" e_stop="71912" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72606" stop="72401"/>
              <exon start="72177" stop="71912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAATCTGCCTGATGGATAAGCAGGAAAAGAAGGAGAAATCAGTAGGATTGGATTCTGAATCCAGTTTAATGCGCAGCGTGGACGAAGAAGCGGAGTCTAACGAGGATCGCAGCTTGAAAATCGTAGAGAAGGCTATGATACCGGCATCATGTTCCAATGTCATTGAAGAGGAAGAAGCTGAGATTTTGACGAATATTGAAATG : GTGTCAGGTGGAATTGACAAGGGTTTCAAAAGCTTCTGTAGGGACATGTTTCCGGTAGTCTGAAATTGCCTGCTGTAAATTGTCGAGTAGATTTTTGCAACTTGCATATTGCTGCTTATTCTTTTGCTTGTTGCCTTGCCAGCTTTCTTCCGAAAACTAGCATCCTCTTTGATGTTTGTCTTGATACATTGGTTTAAGAGGTTTCTTCATTTTTGTGTTATCTCAGTGGTAATGCAGGAAATATAAAACTAACAGTTGAAAAGTTA</gDNA_template>
            <first_frame> E  K  S  A  *  W  I  S  R  K  R  R  R  N  Q  *  D  W  I  L  N  P  V  *  C  A  A  W  T  K  K  R  S  L  T  R  I  A  A  *  K  S  *  R  R  L  *  Y  R  H  H  V  P  M  S  L  K  R  K  K  L  R  F  *  R  I  L  K  W :   C  Q  V  E  L  T  R  V  S  K  A  S  V  G  T  C  F  R  *  S  E  I  A  C  C  K  L  S  S  R  F  L  Q  L  A  Y  C  C  L  F  F  C  L  L  P  C  Q  L  S  S  E  N  *  H  P  L  *  C  L  S  *  Y  I  G  L  R  G  F  F  I  F  V  L  S  Q  W  *  C  R  K  Y  K  T  N  S  *  K  V  </first_frame>
            <second_frame>  R  N  L  P  D  G  *  A  G  K  E  G  E  I  S  R  I  G  F  *  I  Q  F  N  A  Q  R  G  R  R  S  G  V  *  R  G  S  Q  L  E  N  R  R  E  G  Y  D  T  G  I  M  F  Q  C  H  *  R  G  R  S  *  D  F  D  E  Y  *  N   : G  V  R  W  N  *  Q  G  F  Q  K  L  L  *  G  H  V  S  G  S  L  K  L  P  A  V  N  C  R  V  D  F  C  N  L  H  I  A  A  Y  S  F  A  C  C  L  A  S  F  L  P  K  T  S  I  L  F  D  V  C  L  D  T  L  V  *  E  V  S  S  F  L  C  Y  L  S  G  N  A  G  N  I  K  L  T  V  E  K  L </second_frame>
            <third_frame>   E  I  C  L  M  D  K  Q  E  K  K  E  K  S  V  G  L  D  S  E  S  S  L  M  R  S  V  D  E  E  A  E  S  N  E  D  R  S  L  K  I  V  E  K  A  M  I  P  A  S  C  S  N  V  I  E  E  E  E  A  E  I  L  T  N  I  E  M  :  V  S  G  G  I  D  K  G  F  K  S  F  C  R  D  M  F  P  V  V  *  N  C  L  L  *  I  V  E  *  I  F  A  T  C  I  L  L  L  I  L  L  L  V  A  L  P  A  F  F  R  K  L  A  S  S  L  M  F  V  L  I  H  W  F  K  R  F  L  H  F  C  V  I  S  V  V  M  Q  E  I  *  N  *  Q  L  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72604" stop="72401"/>
                    <exon start="72177" stop="72115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EICLMDKQEKKEKSVGLDSESSLMRSVDEEAESNEDRSLKIVEKAMIPASCSNVIEEEEAEILTNIEMVSGGIDKGFKSFCRDMFPVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100030" PGL_stop="100699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100030" e_stop="100699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100030" e_stop="100699" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100030" stop="100699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100030" stop="100417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</gDNA_template>
            <first_frame> I  Y  V  L  F  L  Y  L  M  V  L  F  L  R  K  N  K  I  R  T  F  W  R  K  E  C  W  G  V  E  P  *  *  L  S  C  K  E  S  S  C  P  I  C  F  Y  V  V  Y  D  G  A  K  I  F  I  K  E  F  K  I  *  K  I  K  Y  I  K  K  S  K  V  F  N  I  *  S  F  I  I  *  I  K  K  F  F  *  L  Y  M  S  N  I  F  F  A  Q  K  R  I  R  *  T  L  S  Q  R  R  T  Q  I  L  K  T  L  G  A  L  Y  K  L  *  S  K  L  K  N  K  I  S  D  A  T  C  L  Y  Q  L  H  K  N  I  *  V  H  Y  L  L  Y  S  F  L  Y  I  F  K  S  F  F  Q  N  *  R  L  H  V  H  R  Y  *  A  M  W  V  R  L  P  K  A  L  T  S  S  D  P  S  L  C  M  N  I  L  N  C  R  I  I  V  L  F  H  I  *  C  H  T  F  L  I  H  K  L  N  A  H  A  I  F  L  L  K  T  I  </first_frame>
            <second_frame>  F  M  F  S  S  F  I  *  W  F  F  F  *  E  K  T  K  *  E  L  F  G  E  K  N  V  G  G  L  N  L  N  S  F  L  V  K  K  A  A  A  Q  F  V  F  T  S  F  M  M  E  L  K  F  S  L  K  S  L  K  Y  K  K  L  N  I  *  K  S  R  K  Y  S  I  F  S  H  L  *  Y  R  *  K  N  F  F  N  Y  I  *  V  I  Y  F  L  H  R  R  E  F  D  E  P  *  A  R  D  E  P  R  F  *  K  L  W  V  H  Y  I  S  S  K  V  N  *  K  I  K  *  V  T  P  L  V  Y  T  N  C  T  R  T  Y  R  C  T  I  Y  Y  I  L  F  Y  I  Y  L  N  H  F  F  K  I  S  D  Y  M  Y  I  V  T  K  P  C  G  S  A  C  L  R  P  S  L  A  P  I  L  P  C  A  *  I  S  *  I  V  E  L  L  F  C  F  T  F  S  V  I  P  F  *  F  I  N  *  M  H  M  Q  F  F  F  *  R  R  S </second_frame>
            <third_frame>   L  C  S  L  P  L  F  N  G  S  F  F  K  K  K  Q  N  K  N  F  L  E  K  R  M  L  G  G  *  T  L  I  A  F  L  *  R  K  Q  L  P  N  L  F  L  R  R  L  *  W  S  *  N  F  H  *  R  V  *  N  I  K  N  *  I  Y  K  K  V  E  S  I  Q  Y  L  V  I  Y  N  I  D  K  K  I  F  L  T  I  Y  E  *  Y  I  F  C  T  E  E  N  S  M  N  P  K  P  E  T  N  P  D  F  E  N  F  G  C  T  I  *  A  L  K  *  I  K  K  *  N  K  *  R  H  L  F  I  P  T  A  Q  E  H  I  G  A  L  F  I  I  F  F  F  I  Y  I  *  I  I  F  S  K  L  A  I  T  C  T  S  L  L  S  H  V  G  P  L  A  *  G  P  H  *  L  R  S  F  L  V  H  E  Y  L  K  L  *  N  Y  C  S  V  S  H  L  V  S  Y  L  F  N  S  *  I  K  C  T  C  N  F  S  F  E  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0203N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="100791" PGL_stop="101491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100791" e_stop="101491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="100791" e_stop="101491" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100791" stop="101491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGACTCAACTATTTATTATTATCATCAA</gDNA_template>
            <first_frame> E  V  C  *  E  L  K  M  C  L  D  C  V  A  Y  N  F  F  *  K  N  V  E  V  L  E  T  N  L  *  K  L  E  T  I  I  P  H  R  C  V  K  G  I  V  *  C  F  D  Q  L  D  S  H  V  V  Y  M  *  N  I  K  V  K  F  W  *  I  S  S  G  I  R  V  I  T  L  T  N  E  I  L  F  L  S  *  L  K  G  E  F  K  I  Q  K  *  E  K  F  L  A  C  W  V  P  W  G  V  S  W  *  M  T  S  D  I  S  V  E  Q  E  E  N  *  *  L  E  H  V  K  *  I  G  S  T  *  L  T  D  V  F  C  S  K  C  *  *  G  S  K  L  T  I  E  I  C  Q  K  N  Q  F  N  N  D  G  K  I  R  V  A  L  G  L  I  L  I  I  F  I  R  I  I  F  G  L  E  L  D  *  N  *  N  Y  S  I  T  R  I  *  L  F  I  I  A  L  L  L  L  L  *  *  *  Y  I  L  *  *  N  S  K  Y  C  *  N  R  T  Q  L  F  I  I  I  I   </first_frame>
            <second_frame>  K  F  V  E  S  *  K  C  V  *  I  V  *  P  I  I  F  F  K  K  M  W  K  F  W  K  Q  I  F  E  N  W  K  P  L  F  H  I  G  V  *  R  V  L  C  N  V  L  I  S  *  I  H  M  L  F  T  C  K  I  L  K  L  N  F  G  K  F  L  L  A  S  V  *  L  L  *  L  M  R  Y  C  F  C  R  N  *  K  A  N  S  K  F  K  N  K  K  N  F  *  L  V  G  S  R  G  E  Y  H  G  E  *  Q  V  T  *  V  L  N  K  K  K  T  D  D  W  N  M  S  N  E  *  V  Q  R  N  *  L  T  Y  F  A  A  S  V  D  E  E  V  S  *  Q  L  K  Y  V  K  R  T  S  S  T  T  M  V  K  L  E  S  H  *  D  *  F  *  L  Y  L  L  E  L  Y  L  D  *  N  *  I  K  I  R  I  I  V  S  R  G  F  D  Y  L  *  L  H  Y  Y  Y  Y  Y  N  S  N  I  Y  C  S  R  T  L  S  I  V  K  I  G  L  N  Y  L  L  L  S  S  </second_frame>
            <third_frame>   S  L  L  R  V  E  N  V  F  R  L  C  S  L  *  F  F  L  K  K  C  G  S  F  G  N  K  S  L  K  I  G  N  H  Y  S  T  *  V  C  K  G  Y  C  V  M  F  *  S  V  R  F  T  C  C  L  H  V  K  Y  *  S  *  I  L  V  N  F  F  W  H  P  C  N  Y  F  N  *  *  D  T  V  F  V  V  I  K  R  R  I  Q  N  S  K  I  R  K  I  S  S  L  L  G  P  V  G  S  I  M  V  N  D  K  *  H  K  C  *  T  R  R  K  L  M  I  G  T  C  Q  M  N  R  F  N  V  I  D  *  R  I  L  Q  Q  V  L  M  R  K  *  A  D  N  *  N  M  S  K  E  P  V  Q  Q  R  W  *  N  *  S  R  T  R  I  N  F  N  Y  I  Y  *  N  Y  I  W  T  R  I  R  L  K  L  E  L  *  Y  H  E  D  L  I  I  Y  N  C  T  I  I  I  I  I  I  V  I  Y  I  V  V  E  L  *  V  L  L  K  *  D  S  T  I  Y  Y  Y  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0203N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="103755" PGL_stop="108754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103755" e_stop="104135"/>
            <exon e_start="104672" e_stop="104902"/>
            <exon e_start="105459" e_stop="105515"/>
            <exon e_start="105604" e_stop="105732"/>
            <exon e_start="106242" e_stop="106319"/>
            <exon e_start="106436" e_stop="106506"/>
            <exon e_start="106621" e_stop="106664"/>
            <exon e_start="106756" e_stop="106963"/>
            <exon e_start="108260" e_stop="108754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="0.987"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.929" e_score="0.955"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="103755" e_stop="104135" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="104136" i_stop="104671" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="104672" e_stop="104902" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="104903" i_stop="105458" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105459" e_stop="105515" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105516" i_stop="105603" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="105604" e_stop="105732" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105733" i_stop="106241" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106242" e_stop="106319" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106436" e_stop="106506" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.955">
            <gDNA_exon_boundary e_start="106621" e_stop="106664" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.929">
            <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="0.976">
            <gDNA_exon_boundary e_start="106756" e_stop="106963" e_length="208"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="108260" e_stop="108754" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103755" stop="104135"/>
              <exon start="104672" stop="104691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103769" stop="104135"/>
              <exon start="104672" stop="104902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103782" stop="104135"/>
              <exon start="104672" stop="104902"/>
              <exon start="105459" stop="105515"/>
              <exon start="105604" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103793" stop="104135"/>
              <exon start="104672" stop="104902"/>
              <exon start="105459" stop="105515"/>
              <exon start="105604" stop="105694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103806" stop="104135"/>
              <exon start="104672" stop="104902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104745" stop="104902"/>
              <exon start="105459" stop="105515"/>
              <exon start="105604" stop="105732"/>
              <exon start="106242" stop="106319"/>
              <exon start="106436" stop="106506"/>
              <exon start="106621" stop="106663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105618" stop="105732"/>
              <exon start="106242" stop="106319"/>
              <exon start="106436" stop="106506"/>
              <exon start="106621" stop="106664"/>
              <exon start="106756" stop="106963"/>
              <exon start="108260" stop="108451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105622" stop="105732"/>
              <exon start="106242" stop="106319"/>
              <exon start="106436" stop="106506"/>
              <exon start="106621" stop="106664"/>
              <exon start="106756" stop="106963"/>
              <exon start="108260" stop="108306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105686" stop="105732"/>
              <exon start="106242" stop="106319"/>
              <exon start="106436" stop="106506"/>
              <exon start="106621" stop="106664"/>
              <exon start="106756" stop="106806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106439" stop="106506"/>
              <exon start="106621" stop="106664"/>
              <exon start="106756" stop="106889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106818" stop="106963"/>
              <exon start="108260" stop="108538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106927" stop="106963"/>
              <exon start="108260" stop="108754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106937" stop="106963"/>
              <exon start="108260" stop="108754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG : ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG : GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT : GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG : GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA : GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG : GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC : GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG : ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTT</gDNA_template>
            <first_frame> K  I  L  L  G  R  S  L  S  F  R  I  A  I  S  L  L  V  G  V  Q  N  P  T  N  Y  D  H  S  C  S  S  L  S  F  F  F  G  S  T  D  R  Y  Q  T  *  S  H  I  Y  I  F  L  I  E  N  F  V  Q  F  D  S  K  I  D  G  F  Y  L  Q  I  H  P  I  S  P  D  F  E  L  R  I  Q  G  K  I  R  L  F  D  C  V  L  G  R  M  F  N  G  M  M  D  P  E  L  I  R  M  A  Q  E  Q  M  S  R  M  S  P  A  D  L  A  R  M  Q  Q  Q  :  M  M  S  N  P  D  L  M  R  M  A  T  E  G  M  K  N  M  R  P  D  D  L  K  V  A  A  E  Q  L  K  H  T  R  P  E  D  M  A  E  I  G  K  K  M  A  N  A  S  P  E  E  I  A  A  M  S  A  Q  M  D  A  Q  V  K  Y  E  I  S  G  A  E  F  L  K  K  Q  :  G  N  D  L  H  S  Q  G  K  F  K  E  A  L  Q  K  Y  S  L  :  A  K  K  N  L  S  S  I  P  A  A  K  G  R  S  I  S  L  A  C  S  L  N  M  M  S  C  Y  L  K  T  G  Q  Y  D  D  C  I  K  E  G  S  E  :  V  L  T  Y  D  D  K  N  I  K  A  L  Y  R  R  G  Q  A  Y  K  E  L  G  Q  L  E  :  D  A  V  S  D  L  S  K  A  L  E  V  S  P  D  D  D  T  I  A  D  V  L  R :   G  V  Q  E  R  L  V  K  E  G  G  S  S  R   : R  R  G  G  L  V  I  E  E  I  I  E  E  E  P  L  V  S  S  E  A  V  D  N  S  F  P  K  S  V  A  S  Q  P  R  E  S  I  S  P  P  K  S  Q  N  E  I  L  G  G  P  P  L  S  S  S  E  S  L  E  A  L  K  N  D  P  E  S  M  R :   S  F  Q  N  F  I  S  R  A  D  P  D  T  L  S  A  L  S  G  G  N  A  K  G  I  P  P  E  M  V  K  T  A  S  N  V  I  G  K  M  S  P  E  E  L  Q  R  M  V  R  L  A  S  S  F  Q  G  E  N  P  F  L  K  K  G  S  S  D  S  F  G  P  G  S  V  P  P  N  V  T  P  D  M  L  K  M  A  T  D  M  M  G  K  M  S  P  E  D  M  Q  K  M  F  T  M  A  S  S  L  K  E  K  S  P  V  S  A  A  T  T  I  D  S  N  G  S  G  Q  Q  S  K  P  R  D  T  R  E  N  F  K  V  D  D  S  T  S  A  S  T  S  S  Q  G  F  S  D  L  N  N  G  S  Y  S  S   </first_frame>
            <second_frame>  K  Y  Y  L  E  D  P  C  R  F  E  L  R  F  L  Y  W  *  A  S  K  I  Q  L  I  T  T  I  L  V  H  R  S  R  F  F  S  V  Q  Q  I  A  I  K  R  N  R  T  Y  T  Y  F  *  L  K  I  L  F  N  L  I  R  K  S  T  D  F  T  Y  R  F  I  R  F  R  L  I  L  N  *  G  F  K  G  R  S  D  Y  S  T  V  Y  *  A  E  C  L  T  E  *  W  I  L  N  *  S  E  W  R  K  S  R  *  V  A  C  P  R  L  I  W  L  G  C  S  S  R :   *  C  L  I  L  I  *  *  E  W  L  L  K  A  *  K  T  *  G  R  M  T  *  R  L  L  Q  N  S  *  S  I  L  V  L  R  I  W  L  R  L  V  K  K  W  L  M  L  H  L  K  K  *  Q  Q  *  V  P  K  W  M  L  R  L  N  M  K  L  A  E  L  S  S  *  R  S  R :   E  M  I  F  T  A  R  E  S  L  R  R  P  C  R  N  I  R  L :   Q  R  K  I  C  Q  A  F  L  P  R  K  A  G  V  S  H  W  L  V  P  *  T  *  C  H  V  T  *  K  L  D  N  T  M  T  A  *  R  K  V  V  R :   F  *  H  M  T  T  R  I  S  K  L  F  I  V  G  V  K  L  I  K  S  W  D  S  *  K :   M  Q  C  L  I  *  V  K  H  L  K  S  R  L  M  M  T  L  L  L  M  S  *   : G  V  S  K  K  D  W  *  K  K  V  V  L  Q  D  :  V  E  E  D  W  L  L  K  K  *  L  K  K  N  H  *  C  L  Q  K  P  W  I  I  H  F  Q  K  V  L  R  H  N  H  V  N  R  S  A  L  L  R  V  K  M  K  F  L  V  G  L  P  Y  Q  V  Q  S  L  W  R  L  *  K  M  T  P  N  P  *   : D  P  S  R  I  L  F  L  A  L  I  Q  T  H  Y  L  P  *  V  V  E  M  P  K  A  Y  L  L  K  W  *  R  Q  P  P  M  L  L  A  R  C  H  Q  K  N  Y  K  E  W  S  G  W  H  P  P  F  K  E  K  I  P  F  L  K  K  V  P  Q  I  A  L  A  L  A  Q  F  L  Q  M  *  H  P  T  C  *  K  W  Q  L  I  *  W  A  K  C  L  Q  K  T  C  K  R  C  L  Q  W  H  L  H  *  K  R  K  V  Q  Y  R  L  Q  Q  L  L  I  L  M  G  Q  V  S  S  Q  N  L  V  T  L  G  K  I  L  K  W  M  T  V  Q  V  Q  A  L  H  H  R  G  F  L  I  *  I  M  V  L  T  Q  A  </second_frame>
            <third_frame>   N  I  T  W  K  I  L  V  V  S  N  C  D  F  S  T  G  R  R  P  K  S  N  *  L  R  P  F  L  F  I  A  L  V  F  F  R  F  N  R  S  L  S  N  V  I  A  H  I  H  I  S  D  *  K  F  C  S  I  *  F  E  N  R  R  I  L  P  T  D  S  S  D  F  A  *  F  *  I  E  D  S  R  E  D  Q  I  I  R  L  C  I  R  Q  N  V  *  R  N  D  G  S  *  I  D  Q  N  G  A  R  A  D  E  S  H  V  P  G  *  F  G  S  D  A  A  A   : D  D  V  *  S  *  F  N  E  N  G  Y  *  R  H  E  K  H  E  A  G  *  L  K  G  C  C  R  T  V  E  A  Y  S  S  *  G  Y  G  *  D  W  *  K  N  G  *  C  F  T  *  R  N  S  S  N  E  C  P  N  G  C  S  G  *  I  *  N  *  R  S  *  V  P  E  E  A   : G  K  *  S  S  Q  P  G  K  V  *  G  G  P  A  E  I  F  A   : C  K  E  K  S  V  K  H  S  C  R  E  R  Q  E  Y  L  I  G  L  F  L  E  H  D  V  M  L  L  K  N  W  T  I  R  *  L  H  K  G  R  *  *   : G  F  D  I  *  R  Q  E  Y  Q  S  S  L  S  *  G  S  S  L  *  R  A  G  T  V  R   : R  C  S  V  *  F  E  *  S  T  *  S  L  A  *  *  *  H  Y  C  *  C  L  K  :  G  C  P  R  K  I  G  E  R  R  W  F  F  K  T :   *  R  R  I  G  Y  *  R  N  N  *  R  R  T  I  S  V  F  R  S  R  G  *  F  I  S  K  K  C  C  V  T  T  T  *  I  D  Q  P  S  *  E  S  K  *  N  S  W  W  A  S  L  I  K  F  R  V  F  G  G  F  K  K  *  P  R  I  H  E  :  I  L  P  E  F  Y  F  S  R  *  S  R  H  T  I  C  L  K  W  W  K  C  Q  R  H  T  S  *  N  G  K  D  S  L  Q  C  Y  W  Q  D  V  T  R  R  T  T  K  N  G  P  V  G  I  L  L  S  R  R  K  S  L  S  *  K  R  F  L  R  *  L  W  P  W  L  S  S  S  K  C  D  T  R  H  A  E  N  G  N  *  Y  D  G  Q  N  V  S  R  R  H  A  K  D  V  Y  N  G  I  F  I  K  R  E  K  S  S  I  G  C  N  N  Y  *  F  *  W  V  R  S  A  V  K  T  S  *  H  *  G  K  F  *  S  G  *  Q  Y  K  C  K  H  F  I  T  G  V  F  *  F  K  *  W  F  L  L  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103893" stop="104135"/>
                    <exon start="104672" stop="104902"/>
                    <exon start="105459" stop="105515"/>
                    <exon start="105604" stop="105732"/>
                    <exon start="106242" stop="106319"/>
                    <exon start="106436" stop="106506"/>
                    <exon start="106621" stop="106664"/>
                    <exon start="106756" stop="106963"/>
                    <exon start="108260" stop="108752"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1554</number_coding_nucleotides>
                  <number_encoded_amino_acids>518</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHIYIFLIENFVQFDSKIDGFYLQIHPISPDFELRIQGKIRLFDCVLGRMFNGMMDPELIRMAQEQMSRMSPADLARMQQQMMSNPDLMRMATEGMKNMRPDDLKVAAEQLKHTRPEDMAEIGKKMANASPEEIAAMSAQMDAQVKYEISGAEFLKKQGNDLHSQGKFKEALQKYSLAKKNLSSIPAAKGRSISLACSLNMMSCYLKTGQYDDCIKEGSEVLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADVLRGVQERLVKEGGSSRRRGGLVIEEIIEEEPLVSSEAVDNSFPKSVASQPRESISPPKSQNEILGGPPLSSSESLEALKNDPESMRSFQNFISRADPDTLSALSGGNAKGIPPEMVKTASNVIGKMSPEELQRMVRLASSFQGENPFLKKGSSDSFGPGSVPPNVTPDMLKMATDMMGKMSPEDMQKMFTMASSLKEKSPVSAATTIDSNGSGQQSKPRDTRENFKVDDSTSASTSSQGFSDLNNGSYSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106241" e_stop="106319"/>
            <exon e_start="106436" e_stop="106506"/>
            <exon e_start="106621" e_stop="106664"/>
            <exon e_start="106756" e_stop="106963"/>
            <exon e_start="108260" e_stop="108754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.929" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="106241" e_stop="106319" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106320" i_stop="106435" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106436" e_stop="106506" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="106507" i_stop="106620" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="106621" e_stop="106664" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.929">
            <gDNA_intron_boundary i_start="106665" i_stop="106755" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="106756" e_stop="106963" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="106964" i_stop="108259" i_length="1296"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108260" e_stop="108754" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106241" stop="106319"/>
              <exon start="106436" stop="106506"/>
              <exon start="106621" stop="106664"/>
              <exon start="106756" stop="106912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106439" stop="106506"/>
              <exon start="106621" stop="106664"/>
              <exon start="106756" stop="106889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106818" stop="106963"/>
              <exon start="108260" stop="108538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106927" stop="106963"/>
              <exon start="108260" stop="108754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106937" stop="106963"/>
              <exon start="108260" stop="108754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA : GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG : GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC : GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG : ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTT</gDNA_template>
            <first_frame> G  F  D  I  *  R  Q  E  Y  Q  S  S  L  S  *  G  S  S  L  *  R  A  G  T  V  R   : R  C  S  V  *  F  E  *  S  T  *  S  L  A  *  *  *  H  Y  C  *  C  L  K  :  G  C  P  R  K  I  G  E  R  R  W  F  F  K  T :   *  R  R  I  G  Y  *  R  N  N  *  R  R  T  I  S  V  F  R  S  R  G  *  F  I  S  K  K  C  C  V  T  T  T  *  I  D  Q  P  S  *  E  S  K  *  N  S  W  W  A  S  L  I  K  F  R  V  F  G  G  F  K  K  *  P  R  I  H  E  :  I  L  P  E  F  Y  F  S  R  *  S  R  H  T  I  C  L  K  W  W  K  C  Q  R  H  T  S  *  N  G  K  D  S  L  Q  C  Y  W  Q  D  V  T  R  R  T  T  K  N  G  P  V  G  I  L  L  S  R  R  K  S  L  S  *  K  R  F  L  R  *  L  W  P  W  L  S  S  S  K  C  D  T  R  H  A  E  N  G  N  *  Y  D  G  Q  N  V  S  R  R  H  A  K  D  V  Y  N  G  I  F  I  K  R  E  K  S  S  I  G  C  N  N  Y  *  F  *  W  V  R  S  A  V  K  T  S  *  H  *  G  K  F  *  S  G  *  Q  Y  K  C  K  H  F  I  T  G  V  F  *  F  K  *  W  F  L  L  K  L </first_frame>
            <second_frame>  V  L  T  Y  D  D  K  N  I  K  A  L  Y  R  R  G  Q  A  Y  K  E  L  G  Q  L  E  :  D  A  V  S  D  L  S  K  A  L  E  V  S  P  D  D  D  T  I  A  D  V  L  R :   G  V  Q  E  R  L  V  K  E  G  G  S  S  R   : R  R  G  G  L  V  I  E  E  I  I  E  E  E  P  L  V  S  S  E  A  V  D  N  S  F  P  K  S  V  A  S  Q  P  R  E  S  I  S  P  P  K  S  Q  N  E  I  L  G  G  P  P  L  S  S  S  E  S  L  E  A  L  K  N  D  P  E  S  M  R :   S  F  Q  N  F  I  S  R  A  D  P  D  T  L  S  A  L  S  G  G  N  A  K  G  I  P  P  E  M  V  K  T  A  S  N  V  I  G  K  M  S  P  E  E  L  Q  R  M  V  R  L  A  S  S  F  Q  G  E  N  P  F  L  K  K  G  S  S  D  S  F  G  P  G  S  V  P  P  N  V  T  P  D  M  L  K  M  A  T  D  M  M  G  K  M  S  P  E  D  M  Q  K  M  F  T  M  A  S  S  L  K  E  K  S  P  V  S  A  A  T  T  I  D  S  N  G  S  G  Q  Q  S  K  P  R  D  T  R  E  N  F  K  V  D  D  S  T  S  A  S  T  S  S  Q  G  F  S  D  L  N  N  G  S  Y  S  S   </second_frame>
            <third_frame>   F  *  H  M  T  T  R  I  S  K  L  F  I  V  G  V  K  L  I  K  S  W  D  S  *  K :   M  Q  C  L  I  *  V  K  H  L  K  S  R  L  M  M  T  L  L  L  M  S  *   : G  V  S  K  K  D  W  *  K  K  V  V  L  Q  D  :  V  E  E  D  W  L  L  K  K  *  L  K  K  N  H  *  C  L  Q  K  P  W  I  I  H  F  Q  K  V  L  R  H  N  H  V  N  R  S  A  L  L  R  V  K  M  K  F  L  V  G  L  P  Y  Q  V  Q  S  L  W  R  L  *  K  M  T  P  N  P  *   : D  P  S  R  I  L  F  L  A  L  I  Q  T  H  Y  L  P  *  V  V  E  M  P  K  A  Y  L  L  K  W  *  R  Q  P  P  M  L  L  A  R  C  H  Q  K  N  Y  K  E  W  S  G  W  H  P  P  F  K  E  K  I  P  F  L  K  K  V  P  Q  I  A  L  A  L  A  Q  F  L  Q  M  *  H  P  T  C  *  K  W  Q  L  I  *  W  A  K  C  L  Q  K  T  C  K  R  C  L  Q  W  H  L  H  *  K  R  K  V  Q  Y  R  L  Q  Q  L  L  I  L  M  G  Q  V  S  S  Q  N  L  V  T  L  G  K  I  L  K  W  M  T  V  Q  V  Q  A  L  H  H  R  G  F  L  I  *  I  M  V  L  T  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0203N09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106242" stop="106319"/>
                    <exon start="106436" stop="106506"/>
                    <exon start="106621" stop="106664"/>
                    <exon start="106756" stop="106963"/>
                    <exon start="108260" stop="108752"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADVLRGVQERLVKEGGSSRRRGGLVIEEIIEEEPLVSSEAVDNSFPKSVASQPRESISPPKSQNEILGGPPLSSSESLEALKNDPESMRSFQNFISRADPDTLSALSGGNAKGIPPEMVKTASNVIGKMSPEELQRMVRLASSFQGENPFLKKGSSDSFGPGSVPPNVTPDMLKMATDMMGKMSPEDMQKMFTMASSLKEKSPVSAATTIDSNGSGQQSKPRDTRENFKVDDSTSASTSSQGFSDLNNGSYSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 442 chains have been computed
$ 
$ memory statistics:
$ 1133264 bytes spliced alignments in total
$ 186 spliced alignments have been stored
$ 6092 bytes was the average size of a spliced alignment
$ 29584 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1972 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 481 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:20:47
-->
