<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:22:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303965" ref_strand="+" ref_description="SGN-E303965 [cLEX-4-H6]">
      <seq>agaaattctagtagttctacagattttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatacttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="803" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="503" g_stop="262" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="1" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="425" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E303965" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="503" e_stop="262"/>
          <exon e_start="183" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATTTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATACTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315012" ref_strand="+" ref_description="SGN-E315012 [cTOB-4-C24]">
      <seq>agaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="803" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="503" g_stop="262" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="1" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="425" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E315012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="503" e_stop="262"/>
          <exon e_start="183" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273554" ref_strand="+" ref_description="SGN-E273554 [cLEN-6-J21]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="802" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="502" g_stop="262" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="1" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="424" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E273554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="502" e_stop="262"/>
          <exon e_start="183" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270721" ref_strand="+" ref_description="SGN-E270721 [cLEM-6-J19]">
      <seq>ctcgtgccgagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaagaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="803" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="501" g_stop="262" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="251" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="1" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="434" r_length="183" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E270721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="501" e_stop="262"/>
          <exon e_start="183" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAAGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298164" ref_strand="+" ref_description="SGN-E298164 [cLEW-9-K20]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttgctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="802" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="502" g_stop="262" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="22" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="403" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E298164" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="502" e_stop="262"/>
          <exon e_start="183" e_stop="22"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTGCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338536" ref_strand="+" ref_description="SGN-E338536 [cTOE-15-A13]">
      <seq>gagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="803" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="504" g_stop="262" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="51" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="376" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E338536" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="504" e_stop="262"/>
          <exon e_start="183" e_stop="51"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGA</genome_strand>
        <mrna_strand>GAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310328" ref_strand="+" ref_description="SGN-E310328 [cTOA-1-K3]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaattctccgactcatccttcctactttgagatgattaaggaagcgattgttacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="789" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="489" g_stop="262" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="64" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="348" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E310328" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="489" e_stop="262"/>
          <exon e_start="183" e_stop="64"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTT</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATTCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTTACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338054" ref_strand="+" ref_description="SGN-E338054 [cTOE-14-H24]">
      <seq>gtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="793" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="493" g_stop="262" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="73" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="343" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E338054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="493" e_stop="262"/>
          <exon e_start="183" e_stop="73"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAA</genome_strand>
        <mrna_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289701" ref_strand="+" ref_description="SGN-E289701 [cLET-4-M5]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="801" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="501" g_stop="262" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="183" g_stop="123" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="301" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E289701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="501" e_stop="262"/>
          <exon e_start="183" e_stop="123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCA</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367023" ref_strand="+" ref_description="SGN-E367023 [cLPT-6-P23]">
      <seq>attctagtagttctacagatcttagaaaccctaatttgtattttctgtaaagatggcgactgaagagccagttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaaaagaaatcctccgactcatccttcctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="799" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="499" g_stop="265" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E367023" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="499" e_stop="265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTT</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTTGTATTTTCTGTAAAGATGGCGACTGAAGAGCCAGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAAAGAAATCCTCCGACTCATCCTTCCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411089" ref_strand="+" ref_description="SGN-E411089 [STM-14-I5]">
      <seq>cagtagttctacagatcttagaaatcctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaattgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccactggcggatactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="794" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="495" g_stop="295" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E411089" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="495" e_stop="295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAG</genome_strand>
        <mrna_strand>CAGTAGTTCTACAGATCTTAGAAATCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATTGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACTGGCGGATACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322892" ref_strand="+" ref_description="SGN-E322892 [cTOB-30-A13]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgtacccaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="802" stop="36"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="502" g_stop="336" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E322892" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="502" e_stop="336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGTACCCAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423477" ref_strand="-" ref_description="SGN-E423477 [STM-42-G19]">
      <seq>aagcagcagcagagactgcaggctttccagctgcgaatttcaaattcntgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtcgcagatgttaatctgacactgcaggaggtcagaagggtgctcaggcctggtggcatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgcttgatccgttgcagcaggctgtcgcagatggttgtcattttaccaggaaaacaggaaagaacatatctgaagccggtttcacaaatgtagatagtcgtcaagtcgtattatcaactgcctctctgataaatcctcatatcattggcatagctcgcaactagatatatccaagtgtttacaatggtgtctttgtgaatctttagctcatgatcttgaacttctccacaacatatttcaaccggctagttatattgcccccgaacaacaagggcacaacagttacagtagaattatgcatcatcattttacaagtaaagagatgagtttttattcttattttgtataataacattggcttgattaaaaagagtgacatgatcagtgaagattcatatagccaactcctaacttgttcgatattgaggcgtagtagttgttgtaattgttgtatttttcctgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5210" stop="1861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4910" g_stop="4855" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3854" g_stop="3758" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="153" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2826" g_stop="2764" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="216" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.132" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2665" g_stop="2160" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="717" r_length="501" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E423477" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423477" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4910" e_stop="4855"/>
          <exon e_start="3854" e_stop="3758"/>
          <exon e_start="2826" e_stop="2764"/>
          <exon e_start="2665" e_stop="2160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCA-TTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCC-AACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</genome_strand>
        <mrna_strand>AAGCAGCAGCAGAGACTGCAGGCTTTCCAGCTGCGAATTTCAAATTCNTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCGCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAGGCCTGGTGGCATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTTGATCCGTTGCAGCAGGCTGTCGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAACATATCTGAAGCCGGTTTCACAAATGTAGATAGTCGTCAAGTCGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAG------ATATATCCAAGTGTTTACAATGGTGTCTTTGTGAATCTTTAGCTCATGATCTTGAA-CTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCCCCGAACAACAAGGGCACAACAGTTACAGTAGAATTATGCATCATCATTTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATGATCAGTGAAGATTCATATAGCCAACTCCTAACTTGTTCGATATTGAGGCGTAGTAGTTGTTGTAATTGTTGTATTTTTCCTGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318281" ref_strand="+" ref_description="SGN-E318281 [cTOA-29-H3]">
      <seq>cactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgctcgatccgttgcagcaggctgttgcagatggttgtcattttaccaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6606" stop="2283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6306" g_stop="6220" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5269" g_stop="5174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="183" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5074" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5073" g_stop="4855" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="402" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3854" g_stop="3758" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="499" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2826" g_stop="2764" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="562" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2665" g_stop="2583" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="645" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E318281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6306" e_stop="6220"/>
          <exon e_start="5269" e_stop="5174"/>
          <exon e_start="5073" e_stop="4855"/>
          <exon e_start="3854" e_stop="3758"/>
          <exon e_start="2826" e_stop="2764"/>
          <exon e_start="2665" e_stop="2583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</genome_strand>
        <mrna_strand>CACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709387" ref_strand="+" ref_description="SGN-E709387 [FA51DA06]">
      <seq>aaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6744" stop="2333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6444" g_stop="6220" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5269" g_stop="5174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="321" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5074" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5073" g_stop="4855" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="540" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3854" g_stop="3758" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="637" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2826" g_stop="2764" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="700" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2665" g_stop="2633" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="733" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E709387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6444" e_stop="6220"/>
          <exon e_start="5269" e_stop="5174"/>
          <exon e_start="5073" e_stop="4855"/>
          <exon e_start="3854" e_stop="3758"/>
          <exon e_start="2826" e_stop="2764"/>
          <exon e_start="2665" e_stop="2633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGC</genome_strand>
        <mrna_strand>AAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423476" ref_strand="+" ref_description="SGN-E423476 [STM-42-G19]">
      <seq>gaattgaaagaatatgttgatacatacagctttgtatcccaagattcactgtacccagaaaatgaaatcagtgaattcatctgtttctgaaagcacaactttaaaagatgtcccctttcattctcaaatgcaaaatgagttgaatcaattgaagaaaagggttaaagaccctttgagtagtagtaacaagttttgcttttgctgcagtagaagacactttatggcagctgctctattgcctattcatccttcccatgcttctgatgtttcgtctcctgctgactccatggcaatgttgaataggttgcatcctcctaggcctgattggtacgaggagttttatgcaacagccatgaacacaagtatgaaagcttatgaagctgaggttacaagtcagagctttttgctaatctgagaggtcaggccaaacaaatcctcgaaattggcattgggacaggtccaaatttgaagtattatgccagtgaggagggcacttccgtttatggcgttgatccaaacaggaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtcgcagatggtaatctgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6801" stop="3462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6440" g_stop="6220" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="289" r_length="218" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5269" g_stop="5174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="385" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5067" i_length="107">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.483" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5066" g_stop="4855" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="597" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3854" g_stop="3762" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="690" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E423476" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6440" e_stop="6220"/>
          <exon e_start="5269" e_stop="5174"/>
          <exon e_start="5066" e_stop="4855"/>
          <exon e_start="3854" e_stop="3762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTG----AA--GAA--AA-GGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTG</genome_strand>
        <mrna_strand>TGAATTCATCTGTTTCTGAAAGCACAACTTTAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAATCAATTGAAGAAAAGGGTTAAAGACCCTTTGAGTAGTAGTAACAAGTTTTGCTTTTGCTGCAGTAGAAGACAC--T-T---T--A-T--G-GCAGCTGCTCTATTGCCTATTCATCCTTCCCATGCTTCTGATGTTTCGTCTCCTGCTGACTCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTGAATAGGTTGCATCCTCCTAGGCCTGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAAGCTTATGAAGCTGAG...........................................................................................................GTTACAAGTCAGAGCTTTTTGCTAATCTGAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGTCCAAATTTGAAGTATTATGCCAGTGAGGAGGGCACTTCCGTTTATGGCGTTGATCCAAACAGGAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCGCAGATGGTAATCTGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450532" ref_strand="+" ref_description="SGN-E450532 [cSTS-9-J19]">
      <seq>tgttgatacatacagctttgtatcccaagattcactgtacccagaaaatgaaatcagtgaattcatctgtttctgaaagcacaactttaaaagatgtcccctttcattctcaaatgcaaaatgagttgaatcaattgaagaaaagggttaaagaccctttgagtagtagtaacaagttttgcttttgctgcagtagaagacactttatggcagctgctctattgcctattcatccttcccatgcttctgatgtttcgtctcctgctgactccatggcaatgttgaataggttgcatcctcctaggcctgattggtacgaggagttttatgcaacagccatgaacacaagtatgaaagcttatgaagctgaggttacaagtcagagctttttgctaatctgagaggtcaggccaaacaaatcctcgaaattggcattgggacaggtccaaatttgaagtattatgccagtgaggagggcacttccgtttatggcgttgatccaaacaggaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6742" stop="3498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6440" g_stop="6220" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="275" r_length="218" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5269" g_stop="5174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5067" i_length="107">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.483" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5066" g_stop="4855" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="583" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3854" g_stop="3798" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="640" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E450532" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6440" e_stop="6220"/>
          <exon e_start="5269" e_stop="5174"/>
          <exon e_start="5066" e_stop="4855"/>
          <exon e_start="3854" e_stop="3798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTG----A-----AGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTT</genome_strand>
        <mrna_strand>TGAATTCATCTGTTTCTGAAAGCACAACTTTAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAATCAATTGAAGAAAAGGGTTAAAGACCCTTTGAGTAGTAGTAACAAGTTTTGCTTTTGCTGCAGTAGAAGACACTTTAT-G--G--C----AG---CTGCTCTATTGCCTATTCATCCTTCCCATGCTTCTGATGTTTCGTCTCCTGCTGACTCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTGAATAGGTTGCATCCTCCTAGGCCTGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAAGCTTATGAAGCTGAG...........................................................................................................GTTACAAGTCAGAGCTTTTTGCTAATCTGAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGTCCAAATTTGAAGTATTATGCCAGTGAGGAGGGCACTTCCGTTTATGGCGTTGATCCAAACAGGAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268904" ref_strand="+" ref_description="SGN-E268904 [cLEM-4-L23]">
      <seq>ttgatacatacaactttgtatcccaagtttcactgtacccacaaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6786" stop="4602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6486" g_stop="6220" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5269" g_stop="5174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5074" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5073" g_stop="4902" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="535" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E268904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6486" e_stop="6220"/>
          <exon e_start="5269" e_stop="5174"/>
          <exon e_start="5073" e_stop="4902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAG</genome_strand>
        <mrna_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297155" ref_strand="+" ref_description="SGN-E297155 [cLET-29-M3]">
      <seq>agatgttgtgctagtattattgaatataaaaagaagctgtgtcttatttctcattgctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30202" stop="31747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30502" g_stop="30676" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31447" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="584" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E297155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30502" e_stop="30676"/>
          <exon e_start="31039" e_stop="31447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</genome_strand>
        <mrna_strand>AGATGTTGTGCTAGTATTATTGAATATAAAAAGAAGCTGTGTCTTATTTCTCATTGCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293205" ref_strand="+" ref_description="SGN-E293205 [cLET-12-E12]">
      <seq>agatgttgtgctagtattattgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30202" stop="31747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30502" g_stop="30676" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31447" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="584" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E293205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30502" e_stop="30676"/>
          <exon e_start="31039" e_stop="31447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</genome_strand>
        <mrna_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289865" ref_strand="+" ref_description="SGN-E289865 [cLET-9-L6]">
      <seq>agatgttgtgctagtattattgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30202" stop="31671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30502" g_stop="30676" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31371" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="508" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E289865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30502" e_stop="30676"/>
          <exon e_start="31039" e_stop="31371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTA</genome_strand>
        <mrna_strand>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344011" ref_strand="+" ref_description="SGN-E344011 [cTOF-12-O24]">
      <seq>ttgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30221" stop="31687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30521" g_stop="30676" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31387" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="505" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E344011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30521" e_stop="30676"/>
          <exon e_start="31039" e_stop="31387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</genome_strand>
        <mrna_strand>TTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733614" ref_strand="+" ref_description="SGN-E733614 [LB10BH12]">
      <seq>tgaagataaaaagaagctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30222" stop="31671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30522" g_stop="30676" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31370" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="487" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="507"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E733614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30522" e_stop="30676"/>
          <exon e_start="31039" e_stop="31370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</genome_strand>
        <mrna_strand>TGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735097" ref_strand="+" ref_description="SGN-E735097 [LB14BG01]">
      <seq>ctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30238" stop="31787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30538" g_stop="30676" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31504" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="605" r_length="466" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E735097" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30538" e_stop="30676"/>
          <exon e_start="31039" e_stop="31504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATTCT</genome_strand>
        <mrna_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAAAANAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347184" ref_strand="+" ref_description="SGN-E347184 [cTOF-25-I20]">
      <seq>ctgtgtctgatttctcatttctgactgaaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30238" stop="31800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30538" g_stop="30676" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31502" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="603" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E347184" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30538" e_stop="30676"/>
          <exon e_start="31039" e_stop="31502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATT</genome_strand>
        <mrna_strand>CTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734686" ref_strand="+" ref_description="SGN-E734686 [LB13BC10]">
      <seq>cctcgtgccgaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctcnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30269" stop="31683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30558" g_stop="30676" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31383" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="463" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="478"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E734686" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30558" e_stop="30676"/>
          <exon e_start="31039" e_stop="31383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTC</genome_strand>
        <mrna_strand>CCTCGTG-CCGAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391310" ref_strand="+" ref_description="SGN-E391310 [TUS-47-N17](-)">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgtttttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaaagagtacagaaggaactgggcttccatttgggctcagtaataatttttttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggaggaagattttgcaatgtccctttaatttcaacttcagattagtatgtaaaatcaagaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcaggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30265" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="30676" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31460" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="571"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E391310" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="30676"/>
          <exon e_start="31039" e_stop="31460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTTTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAAAGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATTTTTTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGAGGAAGATTTTGCAATGTCCCTTTAATTTCAACTTCAGATTAGTATGTAAAATCAAGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCAGGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396346" ref_strand="+" ref_description="SGN-E396346 [TUS-47-N17]">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttananaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30265" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="30676" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31460" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="575"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E396346" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="30676"/>
          <exon e_start="31039" e_stop="31460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTANAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390768" ref_strand="+" ref_description="SGN-E390768 [TUS-47-M17]">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30265" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="30676" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31460" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="574"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E390768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="30676"/>
          <exon e_start="31039" e_stop="31460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390767" ref_strand="+" ref_description="SGN-E390767 [TUS-47-M17](-)">
      <seq>aaaaaaaaaacaccaatggattccagcatcactgcttgtaccaccacctcttttgccgcccgggaggccctcctacataaggcatcagatctattccgcccctccctttttgggttgccatcaatgaggaagaaagggggaagggggaagtgttcaatggaaagggaggattcaaaatcaggaatttgtggatcatttgtggcaggaacactatcatttagcccaacagcaaaggctttagtggatgaaagaaagagtacagaaggaaatgggcttccatttggggtcagtaataatttttttggttggatcctttttggagtttttggtttggtttggtttctttttactgtttacacttctagccttgatgaggaggaagattttgcaatgtccctttaatttcaacttcagattagtatgtaaaatcaagaattttattttatcatttcctttctttacctttttccctggctaattgtactatatacatacgaattaattttattaattttcatttagtgcagggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30265" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="30676" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.908" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31451" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="525" r_length="413" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="571"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E390767" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="30676"/>
          <exon e_start="31039" e_stop="31451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGC</genome_strand>
        <mrna_strand>AAAAAAAAAACACCAATGGATTCCAGCATCACTGCTTGTACCACCACCTCTTTTGCCGCCCGGGAGGCCCTCCTACATAAGGCATCAGATCTATTCCGCCCCTCCCTTTTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAAAGGGGGAAGGGGGAAGTGTTCAATGGAAAGGGAGGATTCAAAATCAGGAATTTGTGGATCATTTGTGGCAGGAACACTATCATTTAGCCCAACAGCAAAGGCTTTAGTGGATGAAAGAAAGAGTACAGAAGGAAATGGGCTTCCATTTGGGGTCAGTAATAATTTTTTTGGTTGGATCCTTTTTGGAGTTTTTGGTTTGGTTTGGTTTCTTTTTACTGTTTACACTTCTAGCCTTGATGAGGAGGAAGATTTTGCAATGTCCCTTTAATTTCAACTTCAGATTAGTATGTAAAATCAAGAATTTTATTTTATCATTTCCTTTCTTTACCTTTTTCCCTGGCTAATTGTACTATATACATACGAATTAATTTTATTAATTTTCATTTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733246" ref_strand="+" ref_description="SGN-E733246 [LB04BE02]">
      <seq>cgataacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30267" stop="31697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="30676" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31405" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="479" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E733246" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="30676"/>
          <exon e_start="31039" e_stop="31405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAAT</genome_strand>
        <mrna_strand>CGATAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282742" ref_strand="+" ref_description="SGN-E282742 [cLER-15-L8]">
      <seq>aaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30266" stop="31754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30566" g_stop="30676" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31454" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="527" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E282742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30566" e_stop="30676"/>
          <exon e_start="31039" e_stop="31454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATG</genome_strand>
        <mrna_strand>AAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735247" ref_strand="+" ref_description="SGN-E735247 [LB14DC11]">
      <seq>cgtacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30271" stop="31768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30571" g_stop="30676" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31467" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="535" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="547"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E735247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30571" e_stop="30676"/>
          <exon e_start="31039" e_stop="31467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTA</genome_strand>
        <mrna_strand>CGTACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733603" ref_strand="+" ref_description="SGN-E733603 [LB10BH01]">
      <seq>cgatacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30271" stop="31687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30571" g_stop="30676" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31394" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="463" r_length="356" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E733603" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30571" e_stop="30676"/>
          <exon e_start="31039" e_stop="31394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGA-ACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTT</genome_strand>
        <mrna_strand>CGATACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296278" ref_strand="+" ref_description="SGN-E296278 [cLET-24-P6]">
      <seq>gaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgtttannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30272" stop="31758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30572" g_stop="30676" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31467" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="534" r_length="429" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E296278" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30572" e_stop="30676"/>
          <exon e_start="31039" e_stop="31467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTA</genome_strand>
        <mrna_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTTANNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734079" ref_strand="+" ref_description="SGN-E734079 [LB11CH08]">
      <seq>gaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30272" stop="31687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30572" g_stop="30676" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31387" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="454" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="466"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E734079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30572" e_stop="30676"/>
          <exon e_start="31039" e_stop="31387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</genome_strand>
        <mrna_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732474" ref_strand="+" ref_description="SGN-E732474 [LB02BB02]">
      <seq>gaataccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30272" stop="31682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30572" g_stop="30676" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31382" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="449" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="476"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E732474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30572" e_stop="30676"/>
          <exon e_start="31039" e_stop="31382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</genome_strand>
        <mrna_strand>GAATACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295658" ref_strand="+" ref_description="SGN-E295658 [cLET-25-O14]">
      <seq>accaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctatggtcaggtttggtctctttatactggttacactattaaccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtcaaaacatgaattctattctatcatttcctctctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30276" stop="31687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30576" g_stop="30676" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31387" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="450" r_length="349" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="462"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E295658" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30576" e_stop="30676"/>
          <exon e_start="31039" e_stop="31387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTA</genome_strand>
        <mrna_strand>ACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTATGGTCAGGTTTGGTCTCTTTATACTGGTTACACTATTAACCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTCAAAACATGAATTCTATTCTATCATTTCCTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278710" ref_strand="+" ref_description="SGN-E278710 [cLER-2-E15]">
      <seq>aatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30279" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30579" g_stop="30676" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31465" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="525" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E278710" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30579" e_stop="30676"/>
          <exon e_start="31039" e_stop="31465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTT</genome_strand>
        <mrna_strand>AATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733494" ref_strand="+" ref_description="SGN-E733494 [LB10AF10]">
      <seq>atggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30280" stop="31682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30580" g_stop="30676" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31382" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="441" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="461"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E733494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30580" e_stop="30676"/>
          <exon e_start="31039" e_stop="31382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</genome_strand>
        <mrna_strand>ATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732995" ref_strand="+" ref_description="SGN-E732995 [LB03CG08]">
      <seq>cggtttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30282" stop="31697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30581" g_stop="30676" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="454" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="472"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E732995" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30581" e_stop="30676"/>
          <exon e_start="31039" e_stop="31396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>CGGTTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713196" ref_strand="+" ref_description="SGN-E713196 [FB06DH12]">
      <seq>tggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30281" stop="31682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30581" g_stop="30676" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31382" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="440" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="457"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E713196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30581" e_stop="30676"/>
          <exon e_start="31039" e_stop="31382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</genome_strand>
        <mrna_strand>TGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321584" ref_strand="+" ref_description="SGN-E321584 [cTOB-25-C12]">
      <seq>gcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30283" stop="31800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30583" g_stop="30676" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31502" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="558" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E321584" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30583" e_stop="30676"/>
          <exon e_start="31039" e_stop="31502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATT</genome_strand>
        <mrna_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320517" ref_strand="+" ref_description="SGN-E320517 [cTOB-22-K3]">
      <seq>gcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaagatgaagattctgcaatgtccctttaatttcaacttcagattactatgntaaatcatgaattctattctatcatttcctctctttaccttcttccatggctanttgtactatatacatacgaattactattactaattatcatttagtgcatggtaaaaatctttaatgacgntaattgattttgatttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30283" stop="31798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30583" g_stop="30676" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31498" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="554" r_length="460" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E320517" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30583" e_stop="30676"/>
          <exon e_start="31039" e_stop="31498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAA</genome_strand>
        <mrna_strand>GCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAAGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGNTAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTANTTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGGTAAAAATCTTTAATGACGNTAATTGATTTTGATTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540907" ref_strand="+" ref_description="SGN-E540907 [TUS-61-G21](-)">
      <seq>ttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30285" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30585" g_stop="30676" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31466" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="520" r_length="428" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E540907" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30585" e_stop="30676"/>
          <exon e_start="31039" e_stop="31466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTT</genome_strand>
        <mrna_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540910" ref_strand="+" ref_description="SGN-E540910 [TUS-61-G21]">
      <seq>ttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30285" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30585" g_stop="30676" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31466" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="520" r_length="428" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E540910" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30585" e_stop="30676"/>
          <exon e_start="31039" e_stop="31466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTT</genome_strand>
        <mrna_strand>TTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290703" ref_strand="+" ref_description="SGN-E290703 [cLET-10-E14]">
      <seq>tccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcattncctctctttaccttcttccatggctaatggtcctatatacatccgaattactattactaattatcattnggggcatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30286" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30586" g_stop="30676" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31466" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="519" r_length="428" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E290703" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30586" e_stop="30676"/>
          <exon e_start="31039" e_stop="31466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTT</genome_strand>
        <mrna_strand>TCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTNCCTCTCTTTACCTTCTTCCATGGCTAATGGTCCTATATACATCCGAATTACTATTACTAATTATCATTNGGGGCATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340011" ref_strand="+" ref_description="SGN-E340011 [cTOF-3-E2]">
      <seq>atcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30292" stop="31697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30592" g_stop="30676" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="443" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="465"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E340011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30592" e_stop="30676"/>
          <exon e_start="31039" e_stop="31396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>ATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284138" ref_strand="+" ref_description="SGN-E284138 [cLER-13-H2]">
      <seq>cactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctatatacttgttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30294" stop="31791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30594" g_stop="30676" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31491" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="536" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E284138" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30594" e_stop="30676"/>
          <exon e_start="31039" e_stop="31491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTG</genome_strand>
        <mrna_strand>CACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTATATACTTGTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343073" ref_strand="+" ref_description="SGN-E343073 [cTOF-11-D20]">
      <seq>tgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcattgcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcgtttagtgcatgttaaaaatctttaatgacgttaattgatttgaatttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30297" stop="31800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30597" g_stop="30676" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31504" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="546" r_length="466" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E343073" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30597" e_stop="30676"/>
          <exon e_start="31039" e_stop="31504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATTCT</genome_strand>
        <mrna_strand>TGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTGCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCGTTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235147" ref_strand="+" ref_description="SGN-E235147 [cLEL-6-N22](-)">
      <seq>cttgtaccaccacctcttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30299" stop="31697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30599" g_stop="30676" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="435" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="453"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E235147" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30599" e_stop="30676"/>
          <exon e_start="31039" e_stop="31396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>CTTGTACCACCACCTC-TTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220640" ref_strand="+" ref_description="SGN-E220640 [cLEL-12-M5](-)">
      <seq>cgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30321" stop="31671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30621" g_stop="30676" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31370" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="388" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="407"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E220640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30621" e_stop="30676"/>
          <exon e_start="31039" e_stop="31370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</genome_strand>
        <mrna_strand>CGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284608" ref_strand="+" ref_description="SGN-E284608 [cLES-3-K12]">
      <seq>cccgtgaggcccttctacataaggtatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattgatcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagcaataatcttcttggctggatcctttttggagtctttggtttggtttgggctctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30323" stop="31574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30623" g_stop="30676" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31274" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="290" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E284608" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30623" e_stop="30676"/>
          <exon e_start="31039" e_stop="31274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTAT</genome_strand>
        <mrna_strand>CCCGTGAGGCCCTTCTACATAAGGTATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTGATCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGCAATAATCTTCTTGGCTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGGCTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234667" ref_strand="+" ref_description="SGN-E234667 [cLEL-6-N22](-)">
      <seq>gtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30326" stop="31697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30626" g_stop="30676" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="409" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="427"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E234667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30626" e_stop="30676"/>
          <exon e_start="31039" e_stop="31396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>GTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225976" ref_strand="+" ref_description="SGN-E225976 [cLEL-31-M20](-)">
      <seq>ggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30330" stop="31697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30630" g_stop="30676" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="405" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E225976" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30630" e_stop="30676"/>
          <exon e_start="31039" e_stop="31396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCC</genome_strand>
        <mrna_strand>GGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234525" ref_strand="+" ref_description="SGN-E234525 [cLEL-6-G2](-)">
      <seq>ctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaataaggaagaatgtgggaagggttaagtgttcaatggaaaaagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcacattactatgtaaaatcatgaattctattaaatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30334" stop="31674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30634" g_stop="30676" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31373" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="378" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="394"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E234525" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30634" e_stop="30676"/>
          <exon e_start="31039" e_stop="31373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>CTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATAAGGAAGAATGTGGGAAGGGTTAAGTGTTCAATGGAAAAAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCACATTACTATGTAAAATCATGAATTCTATTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232617" ref_strand="+" ref_description="SGN-E232617 [cLEL-5-N10](-)">
      <seq>acataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30339" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30639" g_stop="30676" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31460" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="460" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="474"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E232617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30639" e_stop="30676"/>
          <exon e_start="31039" e_stop="31460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>ACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229360" ref_strand="+" ref_description="SGN-E229360 [cLEL-4-H1](-)">
      <seq>ccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30738" stop="31674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31039" g_stop="31373" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="352" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="368"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E229360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31039" e_stop="31373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293827" ref_strand="+" ref_description="SGN-E293827 [cLET-37-O8]">
      <seq>aagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30756" stop="31515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31056" g_stop="31215" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E293827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31056" e_stop="31215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCA</genome_strand>
        <mrna_strand>AAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217366" ref_strand="+" ref_description="SGN-E217366 [cLEL-21-B23](-)">
      <seq>aatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattaagtggcagcaacaatatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30759" stop="31674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31059" g_stop="31373" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="332"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E217366" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31059" e_stop="31373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATT-AGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>AATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAAGTGGCAGCAACAATATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232261" ref_strand="+" ref_description="SGN-E232261 [cLEL-5-N10](-)">
      <seq>atgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30760" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31060" g_stop="31460" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="415"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E232261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31060" e_stop="31460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>ATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235197" ref_strand="+" ref_description="SGN-E235197 [cLEL-6-G2](-)">
      <seq>gtgggaagggttaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcgacactatcattcagccccacagcaatggctttagtggatgaaagaatcagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30762" stop="31674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31062" g_stop="31373" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="328"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E235197" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31062" e_stop="31373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</genome_strand>
        <mrna_strand>GTGGGAAGGGTTAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCGACACTATCATTCAGCCCCACAGCAATGGCTTTAGTGGATGAAAGAATCAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294683" ref_strand="+" ref_description="SGN-E294683 [cLET-22-P11]">
      <seq>gaactgggcttccattttggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtccacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtgaaatcatgaattctattctatcatttcctctctttaccttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30892" stop="31691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31192" g_stop="31398" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E294683" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31192" e_stop="31398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCAT</genome_strand>
        <mrna_strand>GAACTGGGCTTCCATTTTGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTCCACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTGAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213271" ref_strand="+" ref_description="SGN-E213271 [cLEC-71-E21]">
      <seq>caaactacagaaaactcccgcgccattctcccaccttttatttttactcatctcttacctcaattttacctacacatttcactgtcgccgccggcaagcttccgattaacaatggcggatcctaaatttatatatataaagctctaaaaaattctgatcggaagaactcactgtacaattttttttggatccgccaattgacggcgaaatcgagatgcagggccgtcaaccccatccccacaccaccactcctatatccgaagttatccttccaaagcgtggcaagaagcggggtagctacagttgtggccgatgcggtgtacccaaaaaaggccatgtttgcaattttcctaagaaccttaatccgattgataatcccagtcccaatcccaattcgtcactcttagcttccccaccctctgttgttcgtcctcagccgccacctcccctgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgagggggatttctccgatctggataacgaatcggatcgagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgagggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32988" stop="34265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33288" g_stop="33965" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E213271" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33288" e_stop="33965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</genome_strand>
        <mrna_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAA-TT-TATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424428" ref_strand="+" ref_description="SGN-E424428 [STM-43-F23]">
      <seq>ccaccctccgttgttcgtcctcagccgccacctcccatgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgatggggagttctccgatctggataacgaatcggatctagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgaaggtttgtaaggggtggtcggaaacttctagaaggatctggaaatctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctctaagattggaaagtgacattgatgcaaccatgttggcctgcattgcattttcctgtcctaaactggattcaatggagatacttatgtgtaattcagtcaatcggatcactggggatgagttgggtcgttttgttgctgagaaaagatgtcttactaatctcaagatggaaggttgctctaatcttgggggggtttactctttgctcaaccagtctttcaactctttcactttcagatctctattgtcatgctaagatggtcttcaactgccccancttgnaggatgtttccctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33402" stop="35767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33702" g_stop="34111" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34112" i_stop="34360" i_length="249">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34361" g_stop="34462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="509" r_length="99" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34463" i_stop="35206" i_length="744">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35207" g_stop="35351" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="655" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35352" i_stop="35430" i_length="79">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35431" g_stop="35467" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="692" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E424428" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33702" e_stop="34111"/>
          <exon e_start="34361" e_stop="34462"/>
          <exon e_start="35207" e_stop="35351"/>
          <exon e_start="35431" e_stop="35467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTT-GGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGG</genome_strand>
        <mrna_strand>CCACCCTCCGTTGTTCGTCCTCAGCCGCCACCTCCCATGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGATGGGGAGTTCTCCGATCTGGATAACGAATCGGATCTAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAAGGTTTGTAAGGGGTGGTCGGAAACTTCTAGAAGGATCTGGAAATCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTAAGATTGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCAACCATGTTGGCCTGCATTGCATTTTCCTGTCCTAAACTGGATTCAATGGAGATACTTATGTGTAAT---TCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGTTGGGTCGTTTTGTTGCTGAGAAAAGATGTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGGGTTTACTCTTTGCTCAACCAGTCTTTCAACTCTTTCACTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCANCTTGNAGGATGTTTCCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452385" ref_strand="+" ref_description="SGN-E452385 [cSTS-16-J23]">
      <seq>ccaccctccgttgttcgtcctcagccgccacctcccatgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgatggggagttctccgatctggataacgaatcggatctagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgaaggtttgtaaggggtggtcggaaacttctagaaggatctggaaatctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctctaagattggaaagtgacattgatgcaaccatgttggcctgcattgcattttcctgtcctaaactggattcaatggagatacttatgtgtaattcagtcaatcggatcactggggatgagttgggtcgttttgttgctgagaaaagatgtcttactaatctcaagatggaaggttgctctaatcttgggggttttactctttgctcaaccagtctttcaactctttcactttcagatctctattgtcatgctaagatggtcttcaactgccccaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33402" stop="35751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33702" g_stop="34111" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34112" i_stop="34360" i_length="249">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34361" g_stop="34462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="509" r_length="99" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34463" i_stop="35206" i_length="744">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35207" g_stop="35351" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="654" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35352" i_stop="35430" i_length="79">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35431" g_stop="35451" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="675" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E452385" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33702" e_stop="34111"/>
          <exon e_start="34361" e_stop="34462"/>
          <exon e_start="35207" e_stop="35351"/>
          <exon e_start="35431" e_stop="35451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTG</genome_strand>
        <mrna_strand>CCACCCTCCGTTGTTCGTCCTCAGCCGCCACCTCCCATGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGATGGGGAGTTCTCCGATCTGGATAACGAATCGGATCTAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAAGGTTTGTAAGGGGTGGTCGGAAACTTCTAGAAGGATCTGGAAATCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTAAGATTGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCAACCATGTTGGCCTGCATTGCATTTTCCTGTCCTAAACTGGATTCAATGGAGATACTTATGTGTAAT---TCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGTTGGGTCGTTTTGTTGCTGAGAAAAGATGTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTTACTCTTTGCTCAACCAGTCTTTCAACTCTTTCACTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319647" ref_strand="+" ref_description="SGN-E319647 [cTOB-12-I18]">
      <seq>cgcctccggcgttgctttcatcggcgagggtttgtaaggggtggttggaaagttctagaaggatctggaagtctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctcttagaatggaaagtgacattgatgctaccatgttggcctgcattgctttttcctgtcctaaactggattcgatggagatacttatgtgtaatacctcagtcaatcggatcactggggatgaattgggtcgttttgttgctgagaaaagatctcttactaatctcaagatggaaggttgctctaatcttgggggtttcactctttgctcaaccagtctttcaactctttcgctttcagatctctattgtcatgctaagatggtcttcaactgccccaacttgaaggatgtttccctggatttttctcaccaagaaaatgacaccaccgatcttactctcatggtcgatggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33631" stop="35823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33931" g_stop="34111" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34112" i_stop="34360" i_length="249">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34361" g_stop="34462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34463" i_stop="35206" i_length="744">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35207" g_stop="35351" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="428" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35352" i_stop="35430" i_length="79">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35431" g_stop="35523" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="521" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E319647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33931" e_stop="34111"/>
          <exon e_start="34361" e_stop="34462"/>
          <exon e_start="35207" e_stop="35351"/>
          <exon e_start="35431" e_stop="35523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</genome_strand>
        <mrna_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211506" ref_strand="+" ref_description="SGN-E211506 [cLEC-67-B18]">
      <seq>atatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcangaagacgtttgcaatgagaatgatcttccacacccataaaatctgcgcataccttcatggaaccaaaaaaaaaaacaaattacttccggaaacagcctttctaccccacaaaggcagggatatgatctgcgtacatgttaccatacctagatcccacttgtgagatacactagcatgttgttagatacaaattacttgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38601" stop="37241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38301" g_stop="37541" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E211506" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38301" e_stop="37541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</genome_strand>
        <mrna_strand>ATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCANGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACC-AAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGA-TACACTAGCATGTTGTTAGAT-ACAAATTACTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550772" ref_strand="+" ref_description="SGN-E550772 [TUS-50-J7]">
      <seq>catatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcaggaagacgtttgcaatgagaatgatcttccacacccataaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38602" stop="37400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38302" g_stop="37700" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E550772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38302" e_stop="37700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</genome_strand>
        <mrna_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688455" ref_strand="+" ref_description="SGN-E688455 [t3_tus_50_j07]">
      <seq>catatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcaggaagacgtttgcaatgagaatgatcttccacacccataaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38602" stop="37400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38302" g_stop="37700" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E688455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38302" e_stop="37700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</genome_strand>
        <mrna_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747645" ref_strand="+" ref_description="SGN-E747645 [GI|3043894]">
      <seq>ggttcgatcctatcgaaagaacattttagaagcgagctatgttaaagtgagcatggatggtgcggcttatttaaggaaaattgatcttaatacttacaaaagttatccacaattactcaaggctttagagaacatgttcaagtgctctattgatgtatattcagaaacagatggatacaacggatgtaattatataccaacttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40564" stop="41447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40864" g_stop="41015" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41016" i_stop="41091" i_length="76">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41092" g_stop="41147" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="208" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E747645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40864" e_stop="41015"/>
          <exon e_start="41092" e_stop="41147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTGGTAAGTTTTAACATAACTATTAGTGGTCAATTCTTTTAATCAGAGTCTTATGATTTTTTATATATATAAAATTCAGATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</genome_strand>
        <mrna_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG............................................................................ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622274" ref_strand="+" ref_description="SGN-E622274 [72639]">
      <seq>gtactttcgtcttcccgaatctctcatctcatcagttttattgcatttctgggaaaatttagcagaaaatcagttttgaaataaggaaaatggcaggaaaaggagggaaagggctagtggcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaagccaatctctcgttcatctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaacaccaaagagtgaaattctcctgtgttatcttagatgtatcttgactaataacatcgcctgtgcttatgtttttttcctctttatctgggttgactaatgacagcactgttggttgtgttcgatttagaataactttatctgatgtaatgaacttatgaacatattagtttgatgtttcatttggtggtcttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50145" stop="53101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50445" g_stop="50481" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="73" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="206" r_length="133" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52799" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="678" r_length="472" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E622274" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50445" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCGTCTCTGGGAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATG-TTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGA-TTAGAATAA--TTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGT</genome_strand>
        <mrna_strand>TTTATTGCATTTCTGGGAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTGAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTGGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAGCCAATCTCTCGTTCATCTCGTGCGGGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAA-CACCAAAGAGTGAAATTCTCCTGTGTTATCTTAGATGTATCTTGACTAATAACATCGCCTGTGCTTATGTTTTTTTCCTCTTTATCTGGGTTGACTAATGACA--GCACTGTTGGTTGTGTTCGATTTAGAATAACTTTATCTGATGTAATGAACTTATGAACATATTAGTTTGATG-TTTCAT-TTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342778" ref_strand="+" ref_description="SGN-E342778 [cTOF-7-M2]">
      <seq>tgggaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggtttgtgtttgattagaataattatctgatgtaatgaactttctgacatattagtttgatgttttcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50158" stop="53093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50458" g_stop="50481" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="157" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52793" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="625" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E342778" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50458" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGG-TTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATT</genome_strand>
        <mrna_strand>TGGGAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTTCTGACATATTAGTTTGATGTTTTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323424" ref_strand="+" ref_description="SGN-E323424 [cTOC-7-A20]">
      <seq>gaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctantatcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgggttatcttagatgtatcttgactaatgacattgccctggcttatgttttttcccctttatctgggttagctaatgacagggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50161" stop="53019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50461" g_stop="50481" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="154" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52719" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="547" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E323424" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50461" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACT</genome_strand>
        <mrna_strand>GAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTANTATCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGGGTTATCTTAGATGTATCTTGACTAATGACATTGCCCTGGCTTATGTTTTTTCCCCTTTATCTGGGTTAGCTAATGACAGGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291576" ref_strand="+" ref_description="SGN-E291576 [cLET-6-M8]">
      <seq>gaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtatcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgtgcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacaacagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgccactggccattcttggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagttcctcataaacaaaaccacctaggagtgaaattctcttgagctatcttagatgtatcttgactaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50161" stop="52962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50461" g_stop="50481" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="154" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52662" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="490" r_length="336" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E291576" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50461" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGA</genome_strand>
        <mrna_strand>GAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTATCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTGCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAACAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCCACTGGCCATTCTTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTTCCTCATAAACAAAACCACCTAGGAGTGAAATTCTCTTGAGCTATCTTAGATGTATCTTGACTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343033" ref_strand="+" ref_description="SGN-E343033 [cTOF-11-A12]">
      <seq>aaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50162" stop="53092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50462" g_stop="50481" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="153" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52792" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="619" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E343033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50462" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATAT</genome_strand>
        <mrna_strand>AAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315970" ref_strand="+" ref_description="SGN-E315970 [cTOA-26-N18]">
      <seq>gcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggntagctaatgacagggcactggtgggtgtgtttgattagaataattatctgatgtaatgaacttctgaacatattaagttgatgttttcatattgttggaatgtggcttggtgatgcatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50390" stop="53126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50470" g_stop="50481" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="145" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52829" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="648" r_length="503" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E315970" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50470" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTG</genome_strand>
        <mrna_strand>GCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGNTAGCTAATGACAGGGCACTGGTGGGTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAAGTTGATGTTTTCATATTGTTGGAATGTGGCTTGGTGATGCATGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355353" ref_strand="+" ref_description="SGN-E355353 [cTOS-18-J22]">
      <seq>gaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50390" stop="53183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50473" g_stop="50481" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="142" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52879" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="695" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52880" i_stop="53134" i_length="255">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53135" g_stop="53146" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="707" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E355353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50473" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52879"/>
          <exon e_start="53135" e_stop="53146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTGTATTGGTTTTTGAAAGCTTTAGTTTCTAATCTTTGTAGTTGTGCAAAGAAAGAATCAGCTTTCGTTTCTTTTCTATAATCATAACTTTGGTATAAAAATCCTACTTACAACTTTCAAATAGCTTCATCAATATCAAGTTCTGATGATGTGTGGACCAATTGATAGCATGTCTGAGTTCTTCTTTGATATTTTGGATTAGATCAAAGAAAAT</genome_strand>
        <mrna_strand>GAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG...............................................................................................................................................................................................................................................................GTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353677" ref_strand="+" ref_description="SGN-E353677 [cTOS-10-N9]">
      <seq>gaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatggtttcatattgttggtatgtggcttggtgatgcatgtatgacactggttatcttgacactcagtttccaatatagtgtctgcaaaagtggttgaggtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50390" stop="53183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50473" g_stop="50481" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="142" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52879" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="694" r_length="552" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52880" i_stop="53134" i_length="255">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53135" g_stop="53145" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="705" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E353677" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50473" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52879"/>
          <exon e_start="53135" e_stop="53145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTGTATTGGTTTTTGAAAGCTTTAGTTTCTAATCTTTGTAGTTGTGCAAAGAAAGAATCAGCTTTCGTTTCTTTTCTATAATCATAACTTTGGTATAAAAATCCTACTTACAACTTTCAAATAGCTTCATCAATATCAAGTTCTGATGATGTGTGGACCAATTGATAGCATGTCTGAGTTCTTCTTTGATATTTTGGATTAGATCAAAGAAAA</genome_strand>
        <mrna_strand>GAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGGTTTCATATTGTTGGTATGTGGCTTGGTGATGCATGTATGACACTGGTTATCTTGACACTCAGTTTCCAATATAGTGTCTG-CAAAAGTGGTTGAG...............................................................................................................................................................................................................................................................GTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297277" ref_strand="+" ref_description="SGN-E297277 [cLET-29-G22]">
      <seq>aaaatcagttttcaaataaggaatatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgtttattccgctttaactgggttagctaatgacagggcactgttggttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50390" stop="53029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50474" g_stop="50481" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="141" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52729" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="544" r_length="403" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E297277" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50474" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTG</genome_strand>
        <mrna_strand>AAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAATATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTATTCCGCTTTAACTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342954" ref_strand="+" ref_description="SGN-E342954 [cTOF-11-O6]">
      <seq>aataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgagttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttacgctctatctgggttagctaatgacagggcactgttggttgtgtttgattagaataatcatctgatgtaatgaacttctgaacatattagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50398" stop="53083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50698" g_stop="50824" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52783" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="584" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E342954" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50698" e_stop="50824"/>
          <exon e_start="52327" e_stop="52783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATG</genome_strand>
        <mrna_strand>AATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGAGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTACGCTCTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATCATCTGATGTAATGAACTTCTGAACATATTAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687714" ref_strand="+" ref_description="SGN-E687714 [T3_tus_79_J07]">
      <seq>ttgaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcatctgtattgttatcaaggaattaagaatgtgatgtaagatgatctttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50425" stop="53235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50723" g_stop="50824" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52479" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="255" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52480" i_stop="52619" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52620" g_stop="52935" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="571" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E687714" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50723" e_stop="50824"/>
          <exon e_start="52327" e_stop="52479"/>
          <exon e_start="52620" e_stop="52935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</genome_strand>
        <mrna_strand>TTGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA............................................................................................................................................GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAAGATGATCTTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320015" ref_strand="+" ref_description="SGN-E320015 [cTOB-31-O21]">
      <seq>ggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcatctgtattgttatcaaggaattaagaatgtgatgtaggatgatctttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50424" stop="53235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50724" g_stop="50824" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52479" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="254" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52480" i_stop="52619" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52620" g_stop="52935" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="570" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E320015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50724" e_stop="50824"/>
          <exon e_start="52327" e_stop="52479"/>
          <exon e_start="52620" e_stop="52935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</genome_strand>
        <mrna_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA............................................................................................................................................GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322772" ref_strand="+" ref_description="SGN-E322772 [cTOB-30-E23]">
      <seq>gaaagggctagtagcggggaagattcagctgcagcgtttttcccaaggagaaagactagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50425" stop="52766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50725" g_stop="50824" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52466" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="238" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E322772" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50725" e_stop="50824"/>
          <exon e_start="52327" e_stop="52466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</genome_strand>
        <mrna_strand>GAAAGGGCTAGTAGCGGGGAAGA-TTCAGCTGCAGCGTTTTTC-CCAAGGAGAAAGACTAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574599" ref_strand="+" ref_description="SGN-E574599 [34092]">
      <seq>agacaacagctgcagcggctgccaacacggagaaatacaagaaaaagcgaatctctcgttcatctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtattgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50445" stop="52890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50745" g_stop="50824" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52590" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="344" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E574599" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50745" e_stop="50824"/>
          <exon e_start="52327" e_stop="52590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCAC</genome_strand>
        <mrna_strand>AGACAACAGCTGCAGCGGCTGCCAACACGGAGAAATACAAGAAAAAGCGAATCTCTCGTTCATCTCGTGCGGGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTATTGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560270" ref_strand="+" ref_description="SGN-E560270 [19898]">
      <seq>catctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaagagtgaaattctcctgtgttatcttagatgtatcttgactaataacatcgcctgtgcttatgtttttttcctctttatctgggttgactaatgacagcactgttggttgtgtttgattagaataacttatctgatgtaatgaacttatgaacatattagtttgatgttttcattttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52014" stop="53096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52327" g_stop="52796" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="490" r_length="470" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E560270" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52327" e_stop="52796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATG-TTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAA-TTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTT</genome_strand>
        <mrna_strand>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAAGAGTGAAATTCTCCTGTGTTATCTTAGATGTATCTTGACTAATAACATCGCCTGTGCTTATGTTTTTTTCCTCTTTATCTGGGTTGACTAATGACA--GCACTGTTGGTTGTGTTTGATTAGAATAACTTATCTGATGTAATGAACTTATGAACATATTAGTTTGATGTTTTCATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340840" ref_strand="+" ref_description="SGN-E340840 [cTOF-5-P5]">
      <seq>tcggaaactgaggttggggatgcgcaccagatttctgcttatgtcttgaaatgttcggaggccacatcatgttgtagtgtacggatagttgcatgaagtgtgatgatggtagcacttgggacaatatctgtgaaactgccttatctatctaggtttgtctgtaatgtaaatgaagatagaattagtgagaaatagtggtcaagtcatgaaaccttttttgcttttcgtataacagctagtcgccctcttcaatattgattttaggctgcagcatttccctgttgatggaaccattctcaatgatcttgcttacttggaattatacgtccaattttgttgctgggagctggagacaaaccagcggaactgcatgacatagaatgtgaatgggtcatgctctctgatgatccttgacgtttaaaataagctttcctgttccgttgtttgatcgaaataacgtgattgaaggcttaatttcttcttcaagtttgtcatttcagctatttattgactaggactgcattgcaggatactgcacatgcgaagaagtattgggaaagaattgncttctcctctacttatgtttctttccctttatataatacctacctttctnctgtaaaatcttaagttcaagatcatgatagcacatgtatgattatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60250" stop="58986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59950" g_stop="59286" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E340840" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59950" e_stop="59286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</genome_strand>
        <mrna_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGNCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTNCTGTAAAATCTTAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418342" ref_strand="+" ref_description="SGN-E418342 [STM-27-E24]">
      <seq>aacaacttcatcagctagcttggatatctatttaagtgatcgaattgggactcgtacgccaagtgactatgcaagtggggctgatctttgcttcacaccccacattacacctacaggaagtggtcctatacaagacaatattcagatgaatcccactttttctagtgatctcaatgacagaggtgatgttgtttacaacctccctattttagtggtcataatactttcaaacgttctacataacttttttttttccttttgcttctttaatgagtctgtgcaggatgtagggaactgttattgactaaaaacttttcaacatctaggaaataagagaatattgcttctcaaaagttaaatactcattgttttcaataagtaaccagattaatcacaaactttgtgttttaacctttgactctgttctttctaagctcctaaatgattcttgctgcaattgtattttaagatagcatcagattcctgcatcactggaaccaactatcctcccccgggacacattcataaggtgccatggttcataaattgagtgatttattataagtgattacatgatgaatccattgcgtttatttccccttgtttgtttatcctataacatgtctcatttgttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61172" stop="59995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60872" g_stop="60225" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E418342" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60872" e_stop="60225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAAC-TTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTC-T--TGC-ATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCT-CCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTGAATACAGCAGTGAATCCATTGCGTTTATTTCCCCTTGTTTGCTTATCCTATAGCATATCTTTTTTTGTTTTTCGCT</genome_strand>
        <mrna_strand>AACAACTTCATCAGCTAGCTTGGATATCTATTTAAGTGATCGAATTGGGACTCGTACGCCAAGTGACTATGCAAGTGGGGCTGATCTTTGCTTCACACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAATATTCAGATGAATCCCACTTTTTCTAGTGATCTCAATGACAGAGGTGATGTTGTTTACAACCTCCCTATTTTAGTGGTCATAATACTTTCAAACGTTCTACATAACTTTTTTTTTTCCTTTTGCTTCTTTAATGAGTCTGTGCAGGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAGGAAATAAGAGAATATTGCTTCTCAAAAGTTAAATACTCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGACTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCTGCAATTGTATTTTAAGATAGCATCAGATTCCTGCATCACTGGAACCAACTATCCTCCCCCGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATTTATTATAAGTGA-T---TA---CAT---G-A-TGAATCCATTGCGTTTATTTCCCCTTGTTTGTTTATCCTATAACATGTC-TCATTTGTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441087" ref_strand="+" ref_description="SGN-E441087 [cSTA-29-K5]">
      <seq>aacaacttcttcagctagcttttatatctatttaagtgatcgaattgggactcgtacgccaagtgactatgcaagtggggctgatctttgcttcacaccccacattacacctacaggaagtggtcctatacaagacaatattcagatgaatcccactttttctagtgatctcaatgacagaggtgatgttgtttacaacctccctattttagtggtcataatactttcaaacgttctacataacttttttttttccttttgcttctttaatgagtctgtgcaggatgtagggaactgttattgactaaaaacttttcaacatctaggaaataagagaatattgcttctcaaaagttaaatactcattgttttcaataagtaaccagattaatcacaaactttgtgttttaacctttgactctgttctttctaagctcctaaatgattcttgctgcaattgtattttaagatagcatcagattcctgcatcactggaaccaactatcctcccccgggacacattcataaggtgccatggttcataaattgagtgatttattataagtgattacatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61172" stop="60005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60872" g_stop="60301" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-E441087" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60872" e_stop="60301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAAC-TTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTC-T--TGC-ATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCT-CCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTG</genome_strand>
        <mrna_strand>AACAACTTCTTCAGCTAGCTTTTATATCTATTTAAGTGATCGAATTGGGACTCGTACGCCAAGTGACTATGCAAGTGGGGCTGATCTTTGCTTCACACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAATATTCAGATGAATCCCACTTTTTCTAGTGATCTCAATGACAGAGGTGATGTTGTTTACAACCTCCCTATTTTAGTGGTCATAATACTTTCAAACGTTCTACATAACTTTTTTTTTTCCTTTTGCTTCTTTAATGAGTCTGTGCAGGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAGGAAATAAGAGAATATTGCTTCTCAAAAGTTAAATACTCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGACTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCTGCAATTGTATTTTAAGATAGCATCAGATTCCTGCATCACTGGAACCAACTATCCTCCCCCGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATTTATTATAAGTGATTACATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745294" ref_strand="+" ref_description="SGN-E745294 [GI|47105784]">
      <seq>gattgtaagatgtggcagcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgtgcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatctattgtataaatcaataattttttttattacgaaactcgttgttagtatttgtaaggttgatggatatgtgagtgaccaaaagttgatagctgaaatattatattgtataaaggggttatatctgcaaaacatttgccctttggggcaaagttgaaatatatagtagccgcaaaaaagaagtttgagtgaatcagccctacttttcggcctaaatccaaatttggttgctgttttggcaacaattttacttgaagcaaaactcatattgggctttgtcacccatgccttggaaagtcagatcttgggcttcaactagcaggtgtacttgggaaaaatcccaaagtttgtgggtgtactatagttcgacttcatatatagacagattgagaatgaacgttttctttgaaaaaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66655" stop="68694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66954" g_stop="67224" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67304" g_stop="67417" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="385" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67487" g_stop="67644" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="543" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67722" g_stop="68393" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="1215" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1241"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E745294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66954" e_stop="67224"/>
          <exon e_start="67304" e_stop="67417"/>
          <exon e_start="67487" e_stop="67644"/>
          <exon e_start="67722" e_stop="68393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</genome_strand>
        <mrna_strand>GATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGTGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACCCATGCCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392099" ref_strand="+" ref_description="SGN-E392099 [TUS-24-D16]">
      <seq>cagcatacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtacgattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccgcgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66669" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66969" g_stop="67224" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67304" g_stop="67417" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="370" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67487" g_stop="67644" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="528" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67722" g_stop="67802" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="609" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E392099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66969" e_stop="67224"/>
          <exon e_start="67304" e_stop="67417"/>
          <exon e_start="67487" e_stop="67644"/>
          <exon e_start="67722" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTAT</genome_strand>
        <mrna_strand>CAGCATACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTACGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCGCGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247658" ref_strand="+" ref_description="SGN-E247658 [cLEF-42-C21]">
      <seq>agcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66670" stop="68073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66970" g_stop="67224" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67304" g_stop="67417" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="369" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67487" g_stop="67644" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="527" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67722" g_stop="67773" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="579" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E247658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66970" e_stop="67224"/>
          <exon e_start="67304" e_stop="67417"/>
          <exon e_start="67487" e_stop="67644"/>
          <exon e_start="67722" e_stop="67773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGT</genome_strand>
        <mrna_strand>AGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392098" ref_strand="+" ref_description="SGN-E392098 [TUS-24-D16](-)">
      <seq>gggggctggattagctctctatattctttttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatttattgtataaatcaataatttttatttattacgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66876" stop="68320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67175" g_stop="67224" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67304" g_stop="67417" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="164" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67487" g_stop="67644" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="322" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67722" g_stop="68020" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="622" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-E392098" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67175" e_stop="67224"/>
          <exon e_start="67304" e_stop="67417"/>
          <exon e_start="67487" e_stop="67644"/>
          <exon e_start="67722" e_stop="68020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTT-TTTATTACGAAA</genome_strand>
        <mrna_strand>GGGGGCTGGATTAGCTCTCTATATTCTTTTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATTTATTGTATAAATCAATAATTTTTATTTATTACGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>93</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="504" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="504" e_stop="262"/>
            <exon e_start="183" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="504" e_stop="262" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="261" i_stop="184" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="183" e_stop="1" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="504" stop="262"/>
              <exon start="183" stop="51"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="262"/>
              <exon start="183" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="503" stop="262"/>
              <exon start="183" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="502" stop="262"/>
              <exon start="183" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="502" stop="262"/>
              <exon start="183" stop="22"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="502" stop="336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="501" stop="262"/>
              <exon start="183" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="501" stop="262"/>
              <exon start="183" stop="123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="499" stop="265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="495" stop="295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="493" stop="262"/>
              <exon start="183" stop="73"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="489" stop="262"/>
              <exon start="183" stop="64"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTT</gDNA_template>
            <first_frame> *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L </first_frame>
            <second_frame>  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S   </second_frame>
            <third_frame>   E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="465" stop="262"/>
                    <exon start="183" stop="1"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6486" PGL_stop="2160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6486" e_stop="6220"/>
            <exon e_start="5269" e_stop="5174"/>
            <exon e_start="5073" e_stop="4855"/>
            <exon e_start="3854" e_stop="3758"/>
            <exon e_start="2826" e_stop="2764"/>
            <exon e_start="2665" e_stop="2160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6486" e_stop="6220" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5269" e_stop="5174" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.091">
            <gDNA_intron_boundary i_start="5173" i_stop="5074" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5073" e_stop="4855" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3854" e_stop="3758" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2826" e_stop="2764" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.919">
            <gDNA_exon_boundary e_start="2665" e_stop="2160" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6486" stop="6220"/>
              <exon start="5269" stop="5174"/>
              <exon start="5073" stop="4902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6444" stop="6220"/>
              <exon start="5269" stop="5174"/>
              <exon start="5073" stop="4855"/>
              <exon start="3854" stop="3758"/>
              <exon start="2826" stop="2764"/>
              <exon start="2665" stop="2633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6306" stop="6220"/>
              <exon start="5269" stop="5174"/>
              <exon start="5073" stop="4855"/>
              <exon start="3854" stop="3758"/>
              <exon start="2826" stop="2764"/>
              <exon start="2665" stop="2583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4910" stop="4855"/>
              <exon start="3854" stop="3758"/>
              <exon start="2826" stop="2764"/>
              <exon start="2665" stop="2160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423477" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCATTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCCAACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</gDNA_template>
            <first_frame> L  I  H  T  T  L  Y  P  K  F  H  C  T  H  K  V  N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  I  E  G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K  T  G  K  N  I  S  E  A  G  F  S  N  V  D  S  R  Q  V  V  L  S  T  A  S  L  I  N  P  H  I  I  G  I  A  R  N  *  I  H  I  Y  P  S  I  F  N  G  V  F  A  N  L  *  L  M  I  L  K  L  L  H  N  I  F  Q  P  A  S  Y  I  A  S  E  Q  Q  G  H  N  S  Y  S  T  I  M  H  H  H  L  Q  V  K  R  *  V  F  I  L  I  L  Y  N  N  I  G  L  I  K  K  S  D  I  V  G  E  D  L  Y  S  Q  L  Q  L  V  R  D  *  G  V  V  V  V  I  V  V  L  L  F  L  Q  R  D </first_frame>
            <second_frame>  *  Y  I  Q  L  C  I  P  S  F  T  V  P  T  K  *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  K  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G  K  Q  E  R  I  Y  L  K  P  V  S  Q  M  *  I  V  V  K  *  Y  Y  Q  L  P  L  *  *  I  L  I  S  L  A  *  L  A  T  R  Y  I  Y  I  Q  V  F  S  M  V  S  L  R  I  F  S  S  *  S  *  S  F  S  T  T  Y  F  N  R  L  V  I  L  P  P  N  N  K  G  T  T  A  T  V  Q  L  C  I  I  I  Y  K  *  R  D  E  F  L  F  L  F  C  I  I  T  L  A  *  L  K  R  V  T  *  S  V  R  I  Y  I  A  N  S  N  L  F  G  I  E  V  L  *  *  L  L  L  F  Y  C  S  F  K  E   </second_frame>
            <third_frame>   D  T  Y  N  F  V  S  Q  V  S  L  Y  P  Q  S  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : D  *  R  L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  N  R  K  E  Y  I  *  S  R  F  L  K  C  R  *  S  S  S  S  I  I  N  C  L  S  D  K  S  S  Y  H  W  H  S  S  Q  L  D  T  Y  I  S  K  Y  F  Q  W  C  L  C  E  S  L  A  H  D  L  E  A  S  P  Q  H  I  S  T  G  *  L  Y  C  L  R  T  T  R  A  Q  Q  L  Q  Y  N  Y  A  S  S  F  T  S  K  E  M  S  F  Y  S  Y  F  V  *  *  H  W  L  D  *  K  E  *  H  S  R  *  G  F  I  *  P  T  P  T  C  S  G  L  R  C  C  S  S  Y  C  C  F  I  V  P  S  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6486" stop="6220"/>
                    <exon start="5269" stop="5174"/>
                    <exon start="5073" stop="4855"/>
                    <exon start="3854" stop="3758"/>
                    <exon start="2826" stop="2764"/>
                    <exon start="2665" stop="2472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHTTLYPKFHCTHKVNSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEIEGYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRKTGKNISEAGFSNVDSRQVVLSTASLINPHIIGIARN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6440" e_stop="6220"/>
            <exon e_start="5269" e_stop="5174"/>
            <exon e_start="5066" e_stop="4855"/>
            <exon e_start="3854" e_stop="3758"/>
            <exon e_start="2826" e_stop="2764"/>
            <exon e_start="2665" e_stop="2160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.819"/>
          <exon-intron don_prob="0.979" acc_prob="0.483" e_score="0.948"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.972"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="0.968"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.819">
            <gDNA_exon_boundary e_start="6440" e_stop="6220" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="5269" e_stop="5174" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.483">
            <gDNA_intron_boundary i_start="5173" i_stop="5067" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="5066" e_stop="4855" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="3854" e_stop="3758" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="2826" e_stop="2764" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.919">
            <gDNA_exon_boundary e_start="2665" e_stop="2160" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6440" stop="6220"/>
              <exon start="5269" stop="5174"/>
              <exon start="5066" stop="4855"/>
              <exon start="3854" stop="3762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6440" stop="6220"/>
              <exon start="5269" stop="5174"/>
              <exon start="5066" stop="4855"/>
              <exon start="3854" stop="3798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4910" stop="4855"/>
              <exon start="3854" stop="3758"/>
              <exon start="2826" stop="2764"/>
              <exon start="2665" stop="2160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423477" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : GTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCATTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCCAACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</gDNA_template>
            <first_frame> *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  N  R  K  E  Y  I  *  S  R  F  L  K  C  R  *  S  S  S  S  I  I  N  C  L  S  D  K  S  S  Y  H  W  H  S  S  Q  L  D  T  Y  I  S  K  Y  F  Q  W  C  L  C  E  S  L  A  H  D  L  E  A  S  P  Q  H  I  S  T  G  *  L  Y  C  L  R  T  T  R  A  Q  Q  L  Q  Y  N  Y  A  S  S  F  T  S  K  E  M  S  F  Y  S  Y  F  V  *  *  H  W  L  D  *  K  E  *  H  S  R  *  G  F  I  *  P  T  P  T  C  S  G  L  R  C  C  S  S  Y  C  C  F  I  V  P  S  K  R  </first_frame>
            <second_frame>  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K  T  G  K  N  I  S  E  A  G  F  S  N  V  D  S  R  Q  V  V  L  S  T  A  S  L  I  N  P  H  I  I  G  I  A  R  N  *  I  H  I  Y  P  S  I  F  N  G  V  F  A  N  L  *  L  M  I  L  K  L  L  H  N  I  F  Q  P  A  S  Y  I  A  S  E  Q  Q  G  H  N  S  Y  S  T  I  M  H  H  H  L  Q  V  K  R  *  V  F  I  L  I  L  Y  N  N  I  G  L  I  K  K  S  D  I  V  G  E  D  L  Y  S  Q  L  Q  L  V  R  D  *  G  V  V  V  V  I  V  V  L  L  F  L  Q  R  D </second_frame>
            <third_frame>   N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G  K  Q  E  R  I  Y  L  K  P  V  S  Q  M  *  I  V  V  K  *  Y  Y  Q  L  P  L  *  *  I  L  I  S  L  A  *  L  A  T  R  Y  I  Y  I  Q  V  F  S  M  V  S  L  R  I  F  S  S  *  S  *  S  F  S  T  T  Y  F  N  R  L  V  I  L  P  P  N  N  K  G  T  T  A  T  V  Q  L  C  I  I  I  Y  K  *  R  D  E  F  L  F  L  F  C  I  I  T  L  A  *  L  K  R  V  T  *  S  V  R  I  Y  I  A  N  S  N  L  F  G  I  E  V  L  *  *  L  L  L  F  Y  C  S  F  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5174" stop="4855"/>
                    <exon start="3854" stop="3758"/>
                    <exon start="2826" stop="2764"/>
                    <exon start="2665" stop="2472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRKTGKNISEAGFSNVDSRQVVLSTASLINPHIIGIARN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6438" stop="6220"/>
                    <exon start="5269" stop="5174"/>
                    <exon start="5066" stop="5037"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEVTSQSFLLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30502" PGL_stop="31504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30502" e_stop="30676"/>
            <exon e_start="31039" e_stop="31504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30502" e_stop="30676" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="31039" e_stop="31504" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30502" stop="30676"/>
              <exon start="31039" stop="31447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30502" stop="30676"/>
              <exon start="31039" stop="31447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30502" stop="30676"/>
              <exon start="31039" stop="31371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30521" stop="30676"/>
              <exon start="31039" stop="31387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30522" stop="30676"/>
              <exon start="31039" stop="31370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30538" stop="30676"/>
              <exon start="31039" stop="31504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30538" stop="30676"/>
              <exon start="31039" stop="31502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30558" stop="30676"/>
              <exon start="31039" stop="31383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="30676"/>
              <exon start="31039" stop="31460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="30676"/>
              <exon start="31039" stop="31460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="30676"/>
              <exon start="31039" stop="31460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="30676"/>
              <exon start="31039" stop="31451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="30676"/>
              <exon start="31039" stop="31405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30566" stop="30676"/>
              <exon start="31039" stop="31454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30571" stop="30676"/>
              <exon start="31039" stop="31467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30571" stop="30676"/>
              <exon start="31039" stop="31394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30572" stop="30676"/>
              <exon start="31039" stop="31467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30572" stop="30676"/>
              <exon start="31039" stop="31387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30572" stop="30676"/>
              <exon start="31039" stop="31382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30576" stop="30676"/>
              <exon start="31039" stop="31387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30579" stop="30676"/>
              <exon start="31039" stop="31465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30580" stop="30676"/>
              <exon start="31039" stop="31382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30581" stop="30676"/>
              <exon start="31039" stop="31396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30581" stop="30676"/>
              <exon start="31039" stop="31382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30583" stop="30676"/>
              <exon start="31039" stop="31502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30583" stop="30676"/>
              <exon start="31039" stop="31498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30585" stop="30676"/>
              <exon start="31039" stop="31466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30585" stop="30676"/>
              <exon start="31039" stop="31466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30586" stop="30676"/>
              <exon start="31039" stop="31466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30592" stop="30676"/>
              <exon start="31039" stop="31396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30594" stop="30676"/>
              <exon start="31039" stop="31491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30597" stop="30676"/>
              <exon start="31039" stop="31504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30599" stop="30676"/>
              <exon start="31039" stop="31396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30621" stop="30676"/>
              <exon start="31039" stop="31370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30623" stop="30676"/>
              <exon start="31039" stop="31274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30626" stop="30676"/>
              <exon start="31039" stop="31396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30630" stop="30676"/>
              <exon start="31039" stop="31396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30634" stop="30676"/>
              <exon start="31039" stop="31373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30639" stop="30676"/>
              <exon start="31039" stop="31460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31039" stop="31373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31056" stop="31215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31059" stop="31373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31060" stop="31460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31062" stop="31373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31192" stop="31398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGTTGTGCTAGTATTATTGAAGATAAAAAGAAGCTGTGTCTGATTTCTCATTTCTGACTGAAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG : GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAAATCTTTAATGACGTTAATTGATTTGAATTTGATAAAAAAATTCT</gDNA_template>
            <first_frame> R  C  C  A  S  I  I  E  D  K  K  K  L  C  L  I  S  H  F  *  L  K  K  R  T  P  M  A  S  S  I  T  A  C  T  T  T  S  L  A  A  R  E  A  L  L  H  K  A  S  A  L  S  R  P  S  V  L   : G  L  P  S  M  R  K  N  V  G  R  V  K  C  S  M  E  R  E  D  S  K  S  G  I  C  G  S  L  V  A  A  T  L  S  F  S  P  T  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  F  G  V  F  G  L  V  W  S  L  Y  T  V  Y  T  S  S  L  D  E  D  E  D  S  A  M  S  L  *  F  Q  L  Q  I  T  M  *  N  H  E  F  Y  S  I  I  S  S  L  Y  L  L  P  W  L  I  V  L  Y  T  Y  E  L  L  L  L  I  I  I  *  C  M  L  K  I  F  N  D  V  N  *  F  E  F  D  K  K  I   </first_frame>
            <second_frame>  D  V  V  L  V  L  L  K  I  K  R  S  C  V  *  F  L  I  S  D  *  K  N  E  H  Q  W  L  P  A  S  L  L  V  P  P  P  L  *  P  P  V  R  P  S  Y  I  R  H  Q  L  Y  P  A  L  L  F  L  :  G  C  H  Q  *  G  R  M  W  E  G  *  S  V  Q  W  K  E  R  I  Q  N  Q  E  F  V  D  H  *  W  Q  Q  H  Y  H  S  A  Q  Q  Q  W  L  *  W  M  K  E  *  V  Q  K  E  L  G  F  H  L  G  S  V  I  I  F  L  V  G  S  F  L  E  S  L  V  W  F  G  L  F  I  L  F  T  L  L  A  L  M  R  M  K  I  L  Q  C  P  F  N  F  N  F  R  L  L  C  K  I  M  N  S  I  L  S  F  P  L  F  T  F  F  H  G  *  L  Y  Y  I  H  T  N  Y  Y  Y  *  L  S  F  S  A  C  *  K  S  L  M  T  L  I  D  L  N  L  I  K  K  F  </second_frame>
            <third_frame>   M  L  C  *  Y  Y  *  R  *  K  E  A  V  S  D  F  S  F  L  T  E  K  T  N  T  N  G  F  Q  H  H  C  L  Y  H  H  L  F  S  R  P  *  G  P  P  T  *  G  I  S  S  I  P  P  F  C  S  W :   V  A  I  N  E  E  E  C  G  K  G  E  V  F  N  G  K  R  G  F  K  I  R  N  L  W  I  I  S  G  S  N  T  I  I  Q  P  N  S  N  G  F  S  G  *  K  N  E  Y  R  R  N  W  A  S  I  W  A  Q  *  *  S  S  W  L  D  P  F  W  S  L  W  F  G  L  V  S  L  Y  C  L  H  F  *  P  *  *  G  *  R  F  C  N  V  P  L  I  S  T  S  D  Y  Y  V  K  S  *  I  L  F  Y  H  F  L  S  L  P  S  S  M  A  N  C  T  I  Y  I  R  I  T  I  T  N  Y  H  L  V  H  V  K  N  L  *  *  R  *  L  I  *  I  *  *  K  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30562" stop="30676"/>
                    <exon start="31039" stop="31328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRTPMASSITACTTTSLAAREALLHKASALSRPSVLGLPSMRKNVGRVKCSMEREDSKSGICGSLVAATLSFSPTAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLVWSLYTVYTSSLDEDEDSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="33288" PGL_stop="35523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33288" e_stop="34111"/>
            <exon e_start="34361" e_stop="34462"/>
            <exon e_start="35207" e_stop="35351"/>
            <exon e_start="35431" e_stop="35523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.966" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33288" e_stop="34111" e_length="824"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.982">
            <gDNA_intron_boundary i_start="34112" i_stop="34360" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34361" e_stop="34462" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.900">
            <gDNA_intron_boundary i_start="34463" i_stop="35206" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35207" e_stop="35351" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.929">
            <gDNA_intron_boundary i_start="35352" i_stop="35430" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35431" e_stop="35523" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33288" stop="33965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33702" stop="34111"/>
              <exon start="34361" stop="34462"/>
              <exon start="35207" stop="35351"/>
              <exon start="35431" stop="35467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33702" stop="34111"/>
              <exon start="34361" stop="34462"/>
              <exon start="35207" stop="35351"/>
              <exon start="35431" stop="35451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33931" stop="34111"/>
              <exon start="34361" stop="34462"/>
              <exon start="35207" stop="35351"/>
              <exon start="35431" stop="35523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG : TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG : GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG : GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</gDNA_template>
            <first_frame> Q  T  T  E  N  S  R  A  I  L  P  P  F  I  F  T  H  L  L  P  Q  F  Y  L  H  I  S  L  S  P  P  A  S  F  R  L  T  M  A  D  P  K  F  I  Y  I  *  S  S  K  K  F  *  S  E  E  L  T  V  Q  F  F  L  D  P  P  I  D  G  E  I  E  M  Q  G  R  Q  P  H  P  H  T  T  T  P  I  S  E  V  I  L  P  K  R  G  K  K  R  G  S  Y  S  C  G  R  C  G  V  P  K  K  G  H  V  C  N  F  P  K  N  L  N  P  I  D  N  P  S  P  N  P  N  S  S  L  L  A  S  P  P  S  V  V  R  P  Q  P  P  P  P  L  P  Q  R  H  V  L  P  Q  L  R  R  A  L  S  F  D  D  V  D  V  N  D  S  P  G  S  D  D  E  G  D  F  S  D  L  D  N  E  S  D  R  V  G  S  G  S  G  I  G  T  L  P  S  S  C  L  W  E  V  F  K  R  L  P  P  P  A  L  L  S  S  A  R  V  C  K  G  W  L  E  S  S  R  R  I  W  K  S  A  V  E  L  R  L  R  V  P  V  N  A  Q  I  G  L  V  G  S  V  L  K  K  C  P  G  L  V  K  L  S  L  R  M  E  S :   D  I  D  A  T  M  L  A  C  I  A  F  S  C  P  K  L  D  S  M  E  I  L  M  C  N  T  S  V  N  R  I  T  G :   D  E  L  G  R  F  V  A  E  K  R  S  L  T  N  L  K  M  E  G  C  S  N  L  G  G  F  T  L  C  S  T  S  L  S  T  L  S  L  S  D  L  Y  C  H  A  K  M  :  V  F  N  C  P  N  L  K  D  V  S  L  D  F  S  H  Q  E  N  D  T  T  D  L  T  L  M  V  D  G  L </first_frame>
            <second_frame>  K  L  Q  K  T  P  A  P  F  S  H  L  L  F  L  L  I  S  Y  L  N  F  T  Y  T  F  H  C  R  R  R  Q  A  S  D  *  Q  W  R  I  L  N  L  Y  I  Y  K  A  L  K  N  S  D  R  K  N  S  L  Y  N  F  F  W  I  R  Q  L  T  A  K  S  R  C  R  A  V  N  P  I  P  T  P  P  L  L  Y  P  K  L  S  F  Q  S  V  A  R  S  G  V  A  T  V  V  A  D  A  V  Y  P  K  K  A  M  F  A  I  F  L  R  T  L  I  R  L  I  I  P  V  P  I  P  I  R  H  S  *  L  P  H  P  L  L  F  V  L  S  R  H  L  P  C  R  N  A  M  Y  S  H  S  S  G  E  H  F  H  L  M  T  L  M  L  M  I  H  L  D  L  M  T  R  G  I  S  P  I  W  I  T  N  R  I  E  L  G  P  D  R  G  *  G  R  C  L  R  V  V  Y  G  K  C  L  R  D  Y  R  L  R  R  C  F  H  R  R  G  F  V  R  G  G  W  K  V  L  E  G  S  G  S  L  L  W  S  L  D  L  G  F  P  *  M  P  R  L  D  L  S  G  R  C  *  R  N  V  Q  G  L  L  S  F  L  L  E  W  K   : V  T  L  M  L  P  C  W  P  A  L  L  F  P  V  L  N  W  I  R  W  R  Y  L  C  V  I  P  Q  S  I  G  S  L   : G  M  N  W  V  V  L  L  L  R  K  D  L  L  L  I  S  R  W  K  V  A  L  I  L  G  V  S  L  F  A  Q  P  V  F  Q  L  F  R  F  Q  I  S  I  V  M  L  R  W :   S  S  T  A  P  T  *  R  M  F  P  W  I  F  L  T  K  K  M  T  P  P  I  L  L  S  W  S  M  V   </second_frame>
            <third_frame>   N  Y  R  K  L  P  R  H  S  P  T  F  Y  F  Y  S  S  L  T  S  I  L  P  T  H  F  T  V  A  A  G  K  L  P  I  N  N  G  G  S  *  I  Y  I  Y  I  K  L  *  K  I  L  I  G  R  T  H  C  T  I  F  F  G  S  A  N  *  R  R  N  R  D  A  G  P  S  T  P  S  P  H  H  H  S  Y  I  R  S  Y  P  S  K  A  W  Q  E  A  G  *  L  Q  L  W  P  M  R  C  T  Q  K  R  P  C  L  Q  F  S  *  E  P  *  S  D  *  *  S  Q  S  Q  S  Q  F  V  T  L  S  F  P  T  L  C  C  S  S  S  A  A  T  S  P  A  A  T  P  C  T  P  T  A  P  A  S  T  F  I  *  *  R  *  C  *  *  F  T  W  I  *  *  R  G  G  F  L  R  S  G  *  R  I  G  S  S  W  V  R  I  G  D  R  D  V  A  F  E  L  F  M  G  S  V  *  E  I  T  A  S  G  V  A  F  I  G  E  G  L  *  G  V  V  G  K  F  *  K  D  L  E  V  C  C  G  A  *  T  *  G  S  R  K  C  P  D  W  T  C  R  V  G  V  K  E  M  S  R  A  C  *  A  F  S  *  N  G  K  :  *  H  *  C  Y  H  V  G  L  H  C  F  F  L  S  *  T  G  F  D  G  D  T  Y  V  *  Y  L  S  Q  S  D  H  W  :  G  *  I  G  S  F  C  C  *  E  K  I  S  Y  *  S  Q  D  G  R  L  L  *  S  W  G  F  H  S  L  L  N  Q  S  F  N  S  F  A  F  R  S  L  L  S  C  *  D   : G  L  Q  L  P  Q  L  E  G  C  F  P  G  F  F  S  P  R  K  *  H  H  R  S  Y  S  H  G  R  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33447" stop="34111"/>
                    <exon start="34361" stop="34462"/>
                    <exon start="35207" stop="35351"/>
                    <exon start="35431" stop="35523"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEELTVQFFLDPPIDGEIEMQGRQPHPHTTTPISEVILPKRGKKRGSYSCGRCGVPKKGHVCNFPKNLNPIDNPSPNPNSSLLASPPSVVRPQPPPPLPQRHVLPQLRRALSFDDVDVNDSPGSDDEGDFSDLDNESDRVGSGSGIGTLPSSCLWEVFKRLPPPALLSSARVCKGWLESSRRIWKSAVELRLRVPVNAQIGLVGSVLKKCPGLVKLSLRMESDIDATMLACIAFSCPKLDSMEILMCNTSVNRITGDELGRFVAEKRSLTNLKMEGCSNLGGFTLCSTSLSTLSLSDLYCHAKMVFNCPNLKDVSLDFSHQENDTTDLTLMVDGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38302" PGL_stop="37541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38302" e_stop="37541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38302" e_stop="37541" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38302" stop="37700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38302" stop="37700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38301" stop="37541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</gDNA_template>
            <first_frame> H  I  D  S  S  T  S  S  I  E  K  S  F  F  L  I  H  S  T  K  K  L  E  T  I  Q  W  Q  T  T  K  D  A  C  N  L  L  T  G  *  K  C  T  H  S  I  H  F  D  F  H  L  K  K  R  K  V  D  I  L  L  V  K  I  *  P  *  V  S  K  W  Q  V  *  F  I  I  V  G  E  Y  S  W  S  S  F  F  S  F  S  S  Y  L  Y  *  Y  Y  Q  N  L  F  Y  N  L  F  S  N  Y  G  S  Q  *  Y  T  N  N  A  T  G  T  G  L  V  Y  K  H  S  T  T  A  L  R  N  P  L  S  L  L  V  I  W  L  Q  N  *  *  N  M  S  V  F  E  C  M  Y  I  R  I  R  E  R  T  N  F  T  L  *  V  Y  Y  L  W  A  E  *  I  R  N  L  D  P  F  R  A  I  R  K  T  F  A  M  R  M  I  F  H  T  H  K  I  C  A  Y  L  H  G  T  K  K  K  K  Q  I  T  S  G  N  S  L  S  T  P  Q  R  Q  G  Y  D  L  R  T  C  Y  H  T  *  I  P  L  V  R  L  H  *  H  V  V  R  *  Q  I  T  C  S </first_frame>
            <second_frame>  I  *  I  H  L  L  P  Q  L  K  N  L  S  F  *  F  I  P  L  K  N  *  K  P  S  N  G  K  Q  L  K  M  H  A  T  F  *  Q  D  E  N  A  L  T  L  F  I  L  I  S  I  *  R  K  E  K  L  T  F  F  W  S  K  Y  D  H  K  F  Q  N  G  K  F  S  L  L  L  *  G  N  T  V  G  A  V  S  L  A  F  L  L  T  Y  I  D  I  T  R  I  C  F  I  I  Y  S  L  I  M  A  H  N  N  T  L  T  M  R  Q  A  L  D  *  F  T  S  T  V  Q  Q  R  F  E  I  L  L  V  F  L  S  F  G  C  K  I  S  K  T  C  R  S  L  N  V  C  I  L  E  L  E  R  E  L  I  S  L  Y  E  F  I  T  C  G  L  N  K  S  G  T  L  I  L  L  E  P  S  G  R  R  L  Q  *  E  *  S  S  T  P  I  K  S  A  H  T  F  M  E  P  K  K  K  N  K  L  L  P  E  T  A  F  L  P  H  K  G  R  D  M  I  C  V  H  V  T  I  P  R  S  H  L  *  D  Y  T  S  M  L  L  D  N  K  L  L  V   </second_frame>
            <third_frame>   Y  R  F  I  Y  F  L  N  *  K  I  F  L  F  N  S  F  H  *  K  I  R  N  H  P  M  A  N  N  *  R  C  M  Q  P  S  N  R  M  K  M  H  S  L  Y  S  F  *  F  P  S  E  E  K  K  S  *  H  S  F  G  Q  N  M  T  I  S  F  K  M  A  S  L  V  Y  Y  C  R  G  I  Q  L  E  Q  F  L  *  L  F  F  L  P  I  L  I  L  P  E  F  V  L  *  F  I  L  *  L  W  L  T  I  I  H  *  Q  C  D  R  H  W  T  S  L  Q  A  Q  Y  N  S  A  S  K  S  S  *  S  S  C  H  L  A  A  K  L  V  K  H  V  G  L  *  M  Y  V  Y  *  N  *  R  E  N  *  F  H  F  M  S  L  L  P  V  G  *  I  N  P  E  P  *  S  F  *  S  H  Q  E  D  V  C  N  E  N  D  L  P  H  P  *  N  L  R  I  P  S  W  N  Q  K  K  K  T  N  Y  F  R  K  Q  P  F  Y  P  T  K  A  G  I  *  S  A  Y  M  L  P  Y  L  D  P  T  C  E  I  T  L  A  C  C  *  I  T  N  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37935" stop="37729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSTVQQRFEILLVFLSFGCKISKTCRSLNVCILELERELISLYEFITCGLNKSGTLILLEPSGRRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40864" PGL_stop="41147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40864" e_stop="41015"/>
            <exon e_start="41092" e_stop="41147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.871" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40864" e_stop="41015" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.871">
            <gDNA_intron_boundary i_start="41016" i_stop="41091" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41092" e_stop="41147" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40864" stop="41015"/>
              <exon start="41092" stop="41147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG : ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</gDNA_template>
            <first_frame> G  S  I  L  S  K  E  H  F  R  S  E  L  C  *  S  E  H  G  W  C  G  L  F  K  E  N  *  S  *  Y  L  Q  K  L  S  T  I  T  Q  G  F  R  E  H  V  Q  V  L  Y  * :   C  I  F  R  N  R  W  I  Q  R  M  *  L  Y  T  N  L  R  </first_frame>
            <second_frame>  V  R  S  Y  R  K  N  I  L  E  A  S  Y  V  K  V  S  M  D  G  A  A  Y  L  R  K  I  D  L  N  T  Y  K  S  Y  P  Q  L  L  K  A  L  E  N  M  F  K  C  S  I   : D  V  Y  S  E  T  D  G  Y  N  G  C  N  Y  I  P  T  Y  E </second_frame>
            <third_frame>   F  D  P  I  E  R  T  F  *  K  R  A  M  L  K  *  A  W  M  V  R  L  I  *  G  K  L  I  L  I  L  T  K  V  I  H  N  Y  S  R  L  *  R  T  C  S  S  A  L  L  :  M  Y  I  Q  K  Q  M  D  T  T  D  V  I  I  Y  Q  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41015"/>
                    <exon start="41092" stop="41147"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSYRKNILEASYVKVSMDGAAYLRKIDLNTYKSYPQLLKALENMFKCSIDVYSETDGYNGCNYIPTYE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="50445" PGL_stop="53146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50445" e_stop="50481"/>
            <exon e_start="50692" e_stop="50824"/>
            <exon e_start="52327" e_stop="52879"/>
            <exon e_start="53135" e_stop="53146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.486" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.444" e_score="1.000"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50445" e_stop="50481" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.486" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50692" e_stop="50824" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52327" e_stop="52879" e_length="553"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.444">
            <gDNA_intron_boundary i_start="52880" i_stop="53134" i_length="255"/>
          </intron>
          <exon e_serial="4" e_score="0.818">
            <gDNA_exon_boundary e_start="53135" e_stop="53146" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50445" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50458" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50461" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50461" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50462" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50470" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50473" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52879"/>
              <exon start="53135" stop="53146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50473" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52879"/>
              <exon start="53135" stop="53145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50474" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50698" stop="50824"/>
              <exon start="52327" stop="52783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50824"/>
              <exon start="52327" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50745" stop="50824"/>
              <exon start="52327" stop="52590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52327" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTGCGTCTCTGGGAAAATTTAGCAGAAAATCAG : TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG : ATCAAAGAAAAT</gDNA_template>
            <first_frame> F  I  A  S  L  G  K  F  S  R  K  S   : V  F  K  *  G  K  W  Q  E  K  E  G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K  *  R  E  S  L  P  G  T  C  N  W  P  F  V  E  M  R  N  L  T  P  L  S  K  V  L  L  L  V  V  V  S  S  L  T  F  T  S  P  S  *  T  K  P  P  R  S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  :  I  K  E  N </first_frame>
            <second_frame>  L  L  R  L  W  E  N  L  A  E  N  Q  :  F  S  N  K  E  N  G  R  K  R  R  E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *  S  E  E  N  H  S  Q  A  L  A  T  G  H  S  W  R  *  G  T  *  H  P  Y  Q  R  Y  Y  C  W  W  W  C  H  P  S  H  S  Q  V  P  H  K  Q  N  H  Q  G  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R :   S  K  K   </second_frame>
            <third_frame>   Y  C  V  S  G  K  I  *  Q  K  I  S :   F  Q  I  R  K  M  A  G  K  G  G  K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *   : D  Q  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50471" stop="50481"/>
                    <exon start="50692" stop="50824"/>
                    <exon start="52327" stop="52623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKISFQIRKMAGKGGKGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50723" e_stop="50824"/>
            <exon e_start="52327" e_stop="52479"/>
            <exon e_start="52620" e_stop="52935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50723" e_stop="50824" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52327" e_stop="52479" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52480" i_stop="52619" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52620" e_stop="52935" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50723" stop="50824"/>
              <exon start="52327" stop="52479"/>
              <exon start="52620" stop="52935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50724" stop="50824"/>
              <exon start="52327" stop="52479"/>
              <exon start="52620" stop="52935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50824"/>
              <exon start="52327" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA : GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</gDNA_template>
            <first_frame> G  K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  :  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R  S  S  V  L  L  S  R  N  *  E  C  D  V  G  *  S  L  S  </first_frame>
            <second_frame>  G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K :   *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *  G  H  L  Y  C  Y  Q  G  I  K  N  V  M  *  D  D  L  Y  L </second_frame>
            <third_frame>   E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *   : S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  V  I  C  I  V  I  K  E  L  R  M  *  C  R  M  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50723" stop="50824"/>
                    <exon start="52327" stop="52479"/>
                    <exon start="52620" stop="52655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKFSCVILDVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50725" stop="50824"/>
                    <exon start="52327" stop="52448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERASSGEDNSCSGCQQGERQEKTNFSFISCGFAVSSGKNSPSAQDQNLCPWQGWSNSSCLLCCNSGVPDCRGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="59950" PGL_stop="59286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59950" e_stop="59286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="59950" e_stop="59286" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59950" stop="59286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</gDNA_template>
            <first_frame> S  E  T  E  V  G  D  A  H  Q  I  S  A  Y  V  L  K  C  S  E  A  T  S  C  C  S  V  R  I  V  A  *  S  V  M  M  V  A  L  G  T  I  S  V  K  L  P  Y  L  S  R  F  V  C  N  V  N  E  D  R  I  S  E  K  *  W  S  S  H  E  T  F  F  A  F  R  I  T  A  S  R  P  L  Q  Y  *  F  *  A  A  A  F  P  C  *  W  N  H  S  Q  *  S  C  L  L  G  I  I  R  P  I  L  L  L  G  A  G  D  K  P  A  E  L  H  D  I  E  C  E  W  V  M  L  S  D  D  P  *  R  L  K  *  A  F  L  F  R  C  L  I  E  I  T  *  L  K  A  *  F  L  L  Q  V  C  H  F  S  Y  L  L  T  R  T  A  L  Q  D  T  A  H  A  K  K  Y  W  E  R  I  V  F  S  S  T  Y  V  S  F  P  L  Y  N  T  Y  L  S  P  V  K  S  E  V  Q  D  H  D  S  T  C  M  I  I   </first_frame>
            <second_frame>  R  K  L  R  L  G  M  R  T  R  F  L  L  M  S  *  N  V  R  R  P  H  H  V  V  V  Y  G  *  L  H  E  V  *  *  W  *  H  L  G  Q  Y  L  *  N  C  L  I  Y  L  G  L  S  V  M  *  M  K  I  E  L  V  R  N  S  G  Q  V  M  K  P  F  L  L  F  V  *  Q  L  V  A  L  F  N  I  D  F  R  L  Q  H  F  P  V  D  G  T  I  L  N  D  L  A  Y  L  E  L  Y  V  Q  F  C  C  W  E  L  E  T  N  Q  R  N  C  M  T  *  N  V  N  G  S  C  S  L  M  I  L  D  V  *  N  K  L  S  C  S  V  V  *  S  K  *  R  D  *  R  L  N  F  F  F  K  F  V  I  S  A  I  Y  *  L  G  L  H  C  R  I  L  H  M  R  R  S  I  G  K  E  L  S  S  P  L  L  M  F  L  S  L  Y  I  I  P  T  F  L  L  *  N  L  K  F  K  I  M  I  A  H  V  *  L  S  </second_frame>
            <third_frame>   G  N  *  G  W  G  C  A  P  D  F  C  L  C  L  E  M  F  G  G  H  I  M  L  *  C  T  D  S  C  M  K  C  D  D  G  S  T  W  D  N  I  C  E  T  A  L  S  I  *  V  C  L  *  C  K  *  R  *  N  *  *  E  I  V  V  K  S  *  N  L  F  C  F  S  Y  N  S  *  S  P  S  S  I  L  I  L  G  C  S  I  S  L  L  M  E  P  F  S  M  I  L  L  T  W  N  Y  T  S  N  F  V  A  G  S  W  R  Q  T  S  G  T  A  *  H  R  M  *  M  G  H  A  L  *  *  S  L  T  F  K  I  S  F  P  V  P  L  F  D  R  N  N  V  I  E  G  L  I  S  S  S  S  L  S  F  Q  L  F  I  D  *  D  C  I  A  G  Y  C  T  C  E  E  V  L  G  K  N  C  L  L  L  Y  L  C  F  F  P  F  I  *  Y  L  P  F  S  C  K  I  *  S  S  R  S  *  *  H  M  Y  D  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0217M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="60872" PGL_stop="60225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60872" e_stop="60225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="60872" e_stop="60225" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60872" stop="60225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60872" stop="60301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAACTTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCTCCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTGAATACAGCAGTGAATCCATTGCGTTTATTTCCCCTTGTTTGCTTATCCTATAGCATATCTTTTTTTGTTTTTCGCT</gDNA_template>
            <first_frame> N  N  F  I  S  *  L  G  Y  L  F  K  R  S  N  W  D  L  F  T  K  *  L  C  K  W  G  *  S  *  L  P  T  P  H  Y  T  Y  R  K  W  S  Y  T  R  Q  H  S  D  E  S  H  L  F  *  W  S  Q  *  Q  R  *  C  C  L  Q  P  P  Y  F  S  G  H  N  T  F  K  C  S  R  *  L  F  F  S  L  C  F  F  N  E  S  V  H  D  V  G  N  C  Y  *  L  K  T  F  Q  H  L  R  N  *  *  T  L  L  L  K  N  *  I  I  I  V  F  N  K  *  P  D  *  S  Q  T  L  C  F  N  L  *  V  C  S  F  *  A  P  K  *  F  L  H  C  I  I  R  *  H  Q  I  P  A  S  L  E  P  T  I  L  P  G  T  H  S  *  G  A  M  V  H  K  L  S  D  V  L  *  V  I  K  *  *  I  Q  Q  *  I  H  C  V  Y  F  P  L  F  A  Y  P  I  A  Y  L  F  L  F  F  A </first_frame>
            <second_frame>  T  T  S  S  A  N  L  D  I  Y  L  S  D  R  I  G  T  C  S  P  S  D  Y  A  S  G  A  D  L  S  F  P  P  H  I  T  P  T  G  S  G  P  I  Q  D  N  I  Q  M  N  P  T  F  S  S  G  L  N  D  R  G  D  V  V  Y  N  L  L  I  L  A  V  T  I  L  S  N  V  P  D  N  F  F  F  P  Y  A  S  L  M  S  L  C  M  M  *  G  T  V  I  D  *  K  L  F  N  I  *  E  I  S  E  H  C  F  S  K  I  K  *  S  L  F  S  I  S  N  Q  I  N  H  K  L  C  V  L  T  F  E  S  V  L  S  K  L  L  N  D  S  C  I  V  L  *  D  S  I  R  F  L  R  H  W  N  Q  P  S  S  L  G  H  I  H  K  V  P  W  F  I  N  *  V  M  Y  Y  K  *  L  N  S  E  Y  S  S  E  S  I  A  F  I  S  P  C  L  L  I  L  *  H  I  F  F  C  F  S   </second_frame>
            <third_frame>   Q  L  H  Q  L  T  W  I  S  I  *  A  I  E  L  G  L  V  H  Q  V  T  M  Q  V  G  L  I  L  A  S  H  P  T  L  H  L  Q  E  V  V  L  Y  K  T  T  F  R  *  I  P  P  F  L  V  V  S  M  T  E  V  M  L  F  T  T  S  L  F  *  R  S  Q  Y  F  Q  M  F  Q  I  T  F  F  F  L  M  L  L  *  *  V  C  A  *  C  R  E  L  L  L  T  K  N  F  S  T  S  K  K  L  V  N  I  A  S  Q  K  L  N  N  H  C  F  Q  *  V  T  R  L  I  T  N  F  V  F  *  P  L  S  L  F  F  L  S  S  *  M  I  L  A  L  Y  Y  K  I  A  S  D  S  C  V  T  G  T  N  H  P  P  W  D  T  F  I  R  C  H  G  S  *  I  E  *  C  I  I  S  D  *  I  V  N  T  A  V  N  P  L  R  L  F  P  L  V  C  L  S  Y  S  I  S  F  F  V  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60871" stop="60584"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSSANLDIYLSDRIGTCSPSDYASGADLSFPPHITPTGSGPIQDNIQMNPTFSSGLNDRGDVVYNLLILAVTILSNVPDNFFFPYASLMSLCMM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66954" PGL_stop="68393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66954" e_stop="67224"/>
            <exon e_start="67304" e_stop="67417"/>
            <exon e_start="67487" e_stop="67644"/>
            <exon e_start="67722" e_stop="68393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66954" e_stop="67224" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67304" e_stop="67417" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67487" e_stop="67644" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="67722" e_stop="68393" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66954" stop="67224"/>
              <exon start="67304" stop="67417"/>
              <exon start="67487" stop="67644"/>
              <exon start="67722" stop="68393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66969" stop="67224"/>
              <exon start="67304" stop="67417"/>
              <exon start="67487" stop="67644"/>
              <exon start="67722" stop="67802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66970" stop="67224"/>
              <exon start="67304" stop="67417"/>
              <exon start="67487" stop="67644"/>
              <exon start="67722" stop="67773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67175" stop="67224"/>
              <exon start="67304" stop="67417"/>
              <exon start="67487" stop="67644"/>
              <exon start="67722" stop="68020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA : CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG : GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG : TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</gDNA_template>
            <first_frame> Y  C  K  M  W  Q  Q  T  W  N  T  P  Y  R  K  D  D  V  E  G  G  A  R  P  L  Y  P  A  M  L  E  N  P  Q  L  R  W  G  F  I  R  K  V  Y  S  I  L  S  L  Q  L  L  I  T  I  A  V  G  A  V  V  V  T  V  H  P  I  A  H  F  F  V  S  T  G  A  G  L  A  L  Y  I  L  L  I  I  A  P  F  I   : T  L  S  P  L  Y  Y  Y  H  Q  K  H  P  V  N  F  L  L  L  G  L  F  T  V  T  L  A  F  A  V  G  L  T  C  A  F  T  S   : G  K  V  I  L  E  S  V  I  L  T  A  A  V  V  L  S  L  T  I  Y  T  F  W  A  A  R  R  G  H  D  F  N  F  L  G  P  F  L  F  G  A  L  M  V  L  M  L  F  A  F  I  Q  :  L  L  F  P  L  G  R  L  S  V  M  I  Y  G  C  L  A  S  I  L  F  C  A  Y  I  I  Y  D  T  D  S  L  I  K  R  Y  T  Y  D  E  Y  I  W  A  A  V  G  L  Y  L  D  V  I  N  L  F  L  S  I  L  T  I  F  R  A  A  E  *  F  P  *  Q  I  N  N  K  N  V  T  F  A  L  *  R  T  L  F  I  Y  C  I  N  Q  *  F  F  L  L  R  N  S  L  L  V  F  V  R  L  M  D  M  *  V  T  K  S  *  *  L  K  Y  Y  I  V  *  R  G  Y  I  C  K  T  F  A  L  W  G  K  V  E  I  Y  S  S  R  K  K  E  V  *  V  N  Q  P  Y  F  S  A  *  I  Q  I  W  L  L  F  W  Q  Q  F  Y  L  K  Q  N  S  Y  W  A  L  S  L  M  S  W  K  V  R  S  W  A  S  T  S  R  C  T  W  E  K  S  Q  S  L  W  V  Y  Y  S  S  T  S  Y  I  D  R  L  R  M  N  V  F  F  E </first_frame>
            <second_frame>  I  V  R  C  G  S  R  R  G  I  R  L  T  G  K  M  T  W  K  A  E  Q  G  R  C  I  R  R  C  W  R  I  H  N  S  V  G  V  L  F  G  K  F  T  Q  F  C  L  Y  S  C  L  *  Q  L  Q  W  A  L  L  L  L  R  F  T  Q  L  H  I  F  L  C  Q  L  G  L  D  *  L  S  I  F  F  L  S  S  L  P  S  S  :  H  *  A  R  C  I  T  I  T  R  N  I  R  *  I  S  C  F  L  G  C  L  Q  L  L  W  P  S  L  *  D  *  L  V  P  S  P  V  :  G  K  *  Y  W  S  P  S  Y  *  P  Q  Q  L  C  L  V  *  P  Y  T  H  F  G  Q  Q  G  E  A  T  I  L  I  S  L  D  H  S  Y  L  V  P  L  W  F  S  C  C  L  P  L  F  S :   Y  C  F  L  W  V  G  S  L  *  *  S  M  A  V  *  R  P  F  C  S  A  H  I  *  F  M  I  R  I  V  *  S  S  A  T  L  T  M  S  T  S  G  L  L  S  D  C  I  W  T  L  S  I  Y  S  Y  L  Y  *  L  F  L  E  L  L  N  S  F  L  D  K  *  I  T  K  M  L  H  L  L  Y  K  E  H  C  L  S  I  V  *  I  N  N  F  F  Y  Y  E  T  R  C  *  Y  L  *  G  *  W  I  C  E  *  P  K  V  D  S  *  N  I  I  L  Y  K  G  V  I  S  A  K  H  L  P  F  G  A  K  L  K  Y  I  V  A  A  K  K  K  F  E  *  I  S  P  T  F  R  P  K  S  K  F  G  C  C  F  G  N  N  F  T  *  S  K  T  H  I  G  L  C  H  S  C  L  G  K  S  D  L  G  L  Q  L  A  G  V  L  G  K  N  P  K  V  C  G  C  T  I  V  R  L  H  I  *  T  D  *  E  *  T  F  S  L   </second_frame>
            <third_frame>   L  *  D  V  A  A  D  V  E  Y  A  L  P  E  R  *  R  G  R  R  S  K  A  V  V  S  G  D  V  G  E  S  T  T  P  L  G  F  Y  S  E  S  L  L  N  F  V  S  T  V  A  Y  N  N  C  S  G  R  C  C  C  Y  G  S  P  N  C  T  F  F  C  V  N  W  G  W  I  S  S  L  Y  S  S  Y  H  R  S  L  H  H :   I  E  P  V  V  L  L  S  P  E  T  S  G  E  F  L  A  S  W  V  V  Y  S  Y  S  G  L  R  C  R  I  N  L  C  L  H  Q  W :   E  S  N  I  G  V  R  H  I  N  R  S  S  C  A  *  F  D  H  I  H  I  L  G  S  K  E  R  P  R  F  *  F  P  W  T  I  L  I  W  C  P  Y  G  S  H  V  V  C  L  Y  S   : V  T  V  S  S  G  *  A  L  C  D  D  L  W  L  F  S  V  H  F  V  L  R  I  Y  N  L  *  Y  G  *  F  N  Q  A  L  H  L  R  *  V  H  L  G  C  C  R  T  V  S  G  R  Y  Q  S  I  L  I  Y  I  D  Y  F  *  S  C  *  I  V  S  L  T  N  K  *  Q  K  C  Y  I  C  S  I  K  N  I  V  Y  L  L  Y  K  S  I  I  F  F  I  T  K  L  V  V  S  I  C  K  V  D  G  Y  V  S  D  Q  K  L  I  A  E  I  L  Y  C  I  K  G  L  Y  L  Q  N  I  C  P  L  G  Q  S  *  N  I  *  *  P  Q  K  R  S  L  S  E  S  A  L  L  F  G  L  N  P  N  L  V  A  V  L  A  T  I  L  L  E  A  K  L  I  L  G  F  V  T  H  V  L  E  S  Q  I  L  G  F  N  *  Q  V  Y  L  G  K  I  P  K  F  V  G  V  L  *  F  D  F  I  Y  R  Q  I  E  N  E  R  F  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66954" stop="67224"/>
                    <exon start="67304" stop="67417"/>
                    <exon start="67487" stop="67644"/>
                    <exon start="67722" stop="67925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCKMWQQTWNTPYRKDDVEGGARPLYPAMLENPQLRWGFIRKVYSILSLQLLITIAVGAVVVTVHPIAHFFVSTGAGLALYILLIIAPFITLSPLYYYHQKHPVNFLLLGLFTVTLAFAVGLTCAFTSGKVILESVILTAAVVLSLTIYTFWAARRGHDFNFLGPFLFGALMVLMLFAFIQLLFPLGRLSVMIYGCLASILFCAYIIYDTDSLIKRYTYDEYIWAAVGLYLDVINLFLSILTIFRAAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68199" stop="68393"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLLFWQQFYLKQNSYWALSLMSWKVRSWASTSRCTWEKSQSLWVYYSSTSYIDRLRMNVFFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67946" stop="68140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKCYICSIKNIVYLLYKSIIFFITKLVVSICKVDGYVSDQKLIAEILYCIKGLYLQNICPLGQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 248 chains have been computed
$ 
$ memory statistics:
$ 184920 bytes spliced alignments in total
$ 93 spliced alignments have been stored
$ 1988 bytes was the average size of a spliced alignment
$ 17760 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1776 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 320 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:24:06
-->
