<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:24:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328714" ref_strand="+" ref_description="SGN-U328714        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G69523.1 | Symbol: None | UbiE/COQ5 methyltransferase family protein, low similarity to SP:Q05197 Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17) (Rhodopseudomonas sphaeroides) {Rhodobacter sphaeroides}; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family | chr1:26133214-26134912 FORWARD | Aliases: None (evalue: 7e-74, score=273) genbank/nr: gi|50912691|ref|XP_467753.1| UbiE/COQ5 methyltransferase-like [Oryza sativa (japonica cultivar-group)] >gi|46390636|dbj|BAD16119.1| UbiE/COQ5 methyltransferase-like [Oryza sativa (japonica cultivar-group)] (evalue: 3e-73, score=277)">
      <seq>ttgatacatacaactttgtatcccaagtttcactgtacccacaaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgctcgatccgttgcagcaggctgttgcagatggttgtcattttaccaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6786" stop="2283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6486" g_stop="6220" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5269" g_stop="5174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5173" i_stop="5074" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5073" g_stop="4855" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="582" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3854" g_stop="3758" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="679" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2826" g_stop="2764" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="742" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2665" g_stop="2583" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="825" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-U328714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6486" e_stop="6220"/>
          <exon e_start="5269" e_stop="5174"/>
          <exon e_start="5073" e_stop="4855"/>
          <exon e_start="3854" e_stop="3758"/>
          <exon e_start="2826" e_stop="2764"/>
          <exon e_start="2665" e_stop="2583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</genome_strand>
        <mrna_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313428" ref_strand="+" ref_description="SGN-U313428        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II reaction center W (PsbW) protein-related, similar to photosystem II reaction center W protein SP:Q41387 from (Spinacia oleracea) | chr2:13026105-13027271 REVERSE | Aliases: T6B20.8, T6B20_8(evalue: 3e-34, score=141) genbank/nr: gi|15224531|ref|NP_180615.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|30684638|ref|NP_850149.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|25354997|pir||A84710 photosystem II reaction center 6.1KD protein [imported] - Arabidopsis thaliana gi|1946362|gb|AAB63080.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|11762232|gb|AAG40394.1| At2g30570 [Arabidopsis thaliana] gi|14030715|gb|AAK53032.1| At2g30570/T6B20.8 [Arabidopsis thaliana] gi|21593002|gb|AAM64951.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|23506075|gb|AAN28897.1| At2g30570/T6B20.8 [Arabidopsis thaliana](evalue: 2e-32, score=141)">
      <seq>aaaaaacgaacaccaatggcttccagcatcactgcttgtaccaccacctctttagccgcccgtgaggccctcctacataaggcatcagctctatcccgcccttctgttcttgggttgccatcaatgaggaagaatgtgggaagggtgaagtgttcaatggaaagagaggattcaaaatcaggaatttgtggatcattagtggcagcaacactatcattcagcccaacagcaatggctttagtggatgaaagaatgagtacagaaggaactgggcttccatttgggctcagtaataatcttcttggttggatcctttttggagtctttggtttggtttggtctctttatactgtttacacttctagccttgatgaggatgaagattctgcaatgtccctttaatttcaacttcagattactatgtaaaatcatgaattctattctatcatttcctctctttaccttcttccatggctaattgtactatatacatacgaattactattactaattatcatttagtgcatgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30265" stop="31761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="30676" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31039" g_stop="31460" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="534" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="570"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U313428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="30676"/>
          <exon e_start="31039" e_stop="31460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTGGTACGTTCATTTTTATACAATCACGTATAAATTATCTAATATACGGTATAAAAAACAATCAATTTTCTTGAATTTGTTCTTGACCTAAGATATTTTAGTTAGACGTTTAATGAACTTATATGATCAGTGACTTAATTCACTCACGGAATTAATGTTTAGTTAAACCTAGGAAATCAAATTATTTAATACTATTCTTTTATAAAATTAAGAATTAGGAATACACATTGATTCCTTATATCTCTAGTTATACCGACTTATAGATGCACTTAGCTTTTATAAACGTTGGAATTCATGACACGAGTAATATGAAAATCGAAAATTATAGGAATTTCCTAAGATCGATATAATACTATCTTACACAGGGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</genome_strand>
        <mrna_strand>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342916" ref_strand="+" ref_description="SGN-U342916        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein (FBL17), contains similarity to F-box protein FBL2 GI:6010699 from (Rattus norvegicus) | chr3:20236764-20239899 REVERSE | Aliases: T5N23.10(evalue: 3e-33, score=139) genbank/nr: gi|42565930|ref|NP_567005.2| F-box family protein (FBL17) [Arabidopsis thaliana] >gi|18087570|gb|AAL58916.1| AT3g54650/T5N23_10 [Arabidopsis thaliana] >gi|22655356|gb|AAM98270.1| At3g54650/T5N23_10 [Arabidopsis thaliana] (evalue: 2e-31, score=139)">
      <seq>caaactacagaaaactcccgcgccattctcccaccttttatttttactcatctcttacctcaattttacctacacatttcactgtcgccgccggcaagcttccgattaacaatggcggatcctaaatttatatatataaagctctaaaaaattctgatcggaagaactcactgtacaattttttttggatccgccaattgacggcgaaatcgagatgcagggccgtcaaccccatccccacaccaccactcctatatccgaagttatccttccaaagcgtggcaagaagcggggtagctacagttgtggccgatgcggtgtacccaaaaaaggccatgtttgcaattttcctaagaaccttaatccgattgataatcccagtcccaatcccaattcgtcactcttagcttccccaccctctgttgttcgtcctcagccgccacctcccctgccgcaacgccatgtactcccacagctccggcgagcactttcatttgatgacgttgatgttaatgattcacctggatctgatgacgagggggatttctccgatctggataacgaatcggatcgagttgggtccggatcggggatagggacgttgccttcgagttgtttatgggaagtgtttaagagattaccgcctccggcgttgctttcatcggcgagggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32988" stop="34265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33288" g_stop="33965" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U342916" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33288" e_stop="33965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</genome_strand>
        <mrna_strand>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAA-TT-TATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341470" ref_strand="+" ref_description="SGN-U341470        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein (FBL17), contains similarity to F-box protein FBL2 GI:6010699 from (Rattus norvegicus) | chr3:20236764-20239899 REVERSE | Aliases: T5N23.10(evalue: 8e-75, score=276) genbank/nr: gi|42565930|ref|NP_567005.2| F-box family protein (FBL17) [Arabidopsis thaliana] >gi|18087570|gb|AAL58916.1| AT3g54650/T5N23_10 [Arabidopsis thaliana] >gi|22655356|gb|AAM98270.1| At3g54650/T5N23_10 [Arabidopsis thaliana] (evalue: 6e-73, score=276)">
      <seq>cgcctccggcgttgctttcatcggcgagggtttgtaaggggtggttggaaagttctagaaggatctggaagtctgctgtggagcttagacttagggttcccgtaaatgcccagattggacttgtcgggtcggtgttaaagaaatgtccagggcttgttaagctttctcttagaatggaaagtgacattgatgctaccatgttggcctgcattgctttttcctgtcctaaactggattcgatggagatacttatgtgtaatacctcagtcaatcggatcactggggatgaattgggtcgttttgttgctgagaaaagatctcttactaatctcaagatggaaggttgctctaatcttgggggtttcactctttgctcaaccagtctttcaactctttcgctttcagatctctattgtcatgctaagatggtcttcaactgccccaacttgaaggatgtttccctggatttttctcaccaagaaaatgacaccaccgatcttactctcatggtcgatggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33631" stop="35823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33931" g_stop="34111" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34112" i_stop="34360" i_length="249">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34361" g_stop="34462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34463" i_stop="35206" i_length="744">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35207" g_stop="35351" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="428" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35352" i_stop="35430" i_length="79">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35431" g_stop="35523" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="521" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U341470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33931" e_stop="34111"/>
          <exon e_start="34361" e_stop="34462"/>
          <exon e_start="35207" e_stop="35351"/>
          <exon e_start="35431" e_stop="35523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAGGTTAGTCCTATTCAGGAACTAAACATAAAGGACTAAACTTTTCTATCTAACAAGGAAACAAAAGAACATAAAAACGAAAAATTGTAACCTGATAATTTACAATGAGAATTACTTATCACCTCCAACTAAAATTATCCTTAAAAAATTGTAATAAGTATACGATGAGGAAAATGATTTAGTGTACTAAGCAGTGATAGAATGTTCAATTGAACGATTATTGCTGACAGTGTATATATATATATATTGCAGTGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGGGTATGCTATAGATATCTAACTTGCAGTATATGTATGTTATCTTAGGATTTTCTTATTGTTCTCTCTAGTTAGTTTTGCGAAGTTGTGTTATCTGCTATCCTCATATCACCCGCCACAAATCAGTATTGCATCATAAGTAGTAGTTTTTATGATTTACATGCCCTAGAGAAACTTACTGTTCAATCACACTCAGAATCTATGCTTTGCTGATATACCTAGATGGCAGATGCATATGTAAAACATCCATGATTTCTCTAGGTTTCTTTTTGCCATAAGTCTTGTAGCCAATGGAGCAACTCTAAGTTTGGGAGGGAGGAGGAGTCAGTAAGGTAAAAAACTTCATAAATCATAGTTGCAGGAATCGTGGGAATTAATGTAATGCAGTAAACCCCCACCCCCCAATAATCACTAATGTTTCTTTTTTGCTTGCCAAAGGAGAAATACGTCGAGTTCAATAACTCTGAGTTTGGAGGGAGAGGAGTATGTTTGTTTGGAGGAAGAGGAGTATGTTTGTTAAATCTTCGTCTGTAAATCATAGTTGCAGGAATCTTGGGAATTAATGTAATGCAGTTATTCTTCATACACATTTTTCTTTATTTGGCACCTGAATCAGAGGTGTTGGTAATTTCATGTAACTTTGTTAAAAGTCCCCTAACTGGTTTGCAGGTGTGGCCTATTCTAGTATTCTGTAATATAGGTTCACATGTTAGTTGCTGAAATGAATGCAATCTCTACATATTTCAGGGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATGGTATGTAGTGTATGATGTTCTGCTCCTTTTTTTCTGGGGTGCAAGCAAACTTATATCTGAAGTGTGTTTACCCCTGTAGGTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</genome_strand>
        <mrna_strand>CGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG.........................................................................................................................................................................................................................................................TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG...............................................................................GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328246" ref_strand="+" ref_description="SGN-U328246        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>catatagattcatctacttcctcaattgaaaaatctttctttttaattcattccactaaaaaattagaaaccatccaatggcaaacaactaaagatgcatgcaaccttctaacaggatgaaaatgcactcactctattcattttgatttccatctgaagaaaagaaaagttgacattcttttggtcaaaatatgaccataagtttcaaaatggcaagtttagtttattattgtaggggaatacagttggagcagtttctttagcttttcttcttacctatattgatattaccagaatttgttttataatttattctctaattatggctcacaataatacactaacaatgcgacaggcactggactagtttacaagcacagtacaacagcgcttcgaaatcctcttagtcttcttgtcatttggctgcaaaattagtaaaacatgtcggtctttgaatgtatgtatattagaattagagagagaactaatttcactttatgagtttattacctgtgggctgaataaatccggaaccttgatccttttagagccatcaggaagacgtttgcaatgagaatgatcttccacacccataaaatctgcgcataccttcatggaaccaaaaaaaaaaacaaattacttccggaaacagcctttctaccccacaaaggcagggatatgatctgcgtacatgttaccatacctagatcccacttgtgagatacactagcatgttgttagatacaaattacttgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38602" stop="37241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38302" g_stop="37541" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-U328246" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38302" e_stop="37541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</genome_strand>
        <mrna_strand>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACC-AAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGA-TACACTAGCATGTTGTTAGAT-ACAAATTACTTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339965" ref_strand="+" ref_description="SGN-U339965        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | auxin-responsive protein / indoleacetic acid-induced protein 2 (IAA2), identical to SP:P49678 Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2) {Arabidopsis thaliana} | chr3:8180775-8181793 REVERSE | Aliases: MXC7.6(evalue: 6e-22, score=99) genbank/nr: IAA2(evalue: 9e-34, score=144)">
      <seq>ggttcgatcctatcgaaagaacattttagaagcgagctatgttaaagtgagcatggatggtgcggcttatttaaggaaaattgatcttaatacttacaaaagttatccacaattactcaaggctttagagaacatgttcaagtgctctattgatgtatattcagaaacagatggatacaacggatgtaattatataccaacttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40564" stop="41447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40864" g_stop="41015" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41016" i_stop="41091" i_length="76">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41092" g_stop="41147" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="208" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U339965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40864" e_stop="41015"/>
          <exon e_start="41092" e_stop="41147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTGGTAAGTTTTAACATAACTATTAGTGGTCAATTCTTTTAATCAGAGTCTTATGATTTTTTATATATATAAAATTCAGATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</genome_strand>
        <mrna_strand>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG............................................................................ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315040" ref_strand="+" ref_description="SGN-U315040        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A.F/Z, identical to GI:2407800 | chr3:20207248-20208628 FORWARD | Aliases: T14E10.130(evalue: 8e-54, score=206) genbank/nr: gi|34902610|ref|NP_912651.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)] gi|22773254|gb|AAN06860.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)](evalue: 3e-52, score=207)">
      <seq>tgggaaaatttagcagaaaatcagttttcaaataaggaaaatggcaggaaaaggagggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtactattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaggagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50158" stop="53183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50458" g_stop="50481" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210">
            <donor d_prob="0.486" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50692" g_stop="50824" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="157" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52327" g_stop="52879" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="710" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52880" i_stop="53134" i_length="255">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53135" g_stop="53145" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="721" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U315040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50458" e_stop="50481"/>
          <exon e_start="50692" e_stop="50824"/>
          <exon e_start="52327" e_stop="52879"/>
          <exon e_start="53135" e_stop="53145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAAATTTAGCAGAAAATCAGGTGACGCTAATGGCCGATCTATGAATTTAAGTCATTCTGTATAGTCAGTCATAACTAGTTTTCTTTCGATTATGCGGAATGTGTAATCAGTATTTGGAAAGTTACTCAGGATATAGTTTGAGATTTTTGTAACCATGATGTTTAGAAGTTGAAAATTCATTTTTCATTGAAGACTAAATTGAGGATCTGGCTTTTTCTGTGTTGGTGTAGTTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTGTATTGGTTTTTGAAAGCTTTAGTTTCTAATCTTTGTAGTTGTGCAAAGAAAGAATCAGCTTTCGTTTCTTTTCTATAATCATAACTTTGGTATAAAAATCCTACTTACAACTTTCAAATAGCTTCATCAATATCAAGTTCTGATGATGTGTGGACCAATTGATAGCATGTCTGAGTTCTTCTTTGATATTTTGGATTAGATCAAAGAAAA</genome_strand>
        <mrna_strand>TGGGAAAATTTAGCAGAAAATCAG..................................................................................................................................................................................................................TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG...............................................................................................................................................................................................................................................................GTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315042" ref_strand="+" ref_description="SGN-U315042        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A.F/Z, identical to GI:2407800 | chr3:20207248-20208628 FORWARD | Aliases: T14E10.130(evalue: 3e-27, score=118) genbank/nr: gi|34902610|ref|NP_912651.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)] gi|22773254|gb|AAN06860.1| Putative histone H2A [Oryza sativa (japonica cultivar-group)](evalue: 3e-26, score=120)">
      <seq>ggaaagggctagtagcggggaagacaacagctgcagcggctgccaacaaggagaaagacaagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaagcaaggatcttaaagtgaaattctcttgtgttatcttagatgtatcttgactaatgacattgcctgtgcttatgttttttccgctttatctgggttagctaatgacagggcactgttggttgtgtttgattagaataattatctgatgtaatgaacttctgaacatattagtttgatgttttcatattgttggtatgtggcttgttgatgcatgtatgacactgtttatcttgacactcagtttccaatatagtgtctgccaaaagtgtttgaggtcatctgtattgttatcaaggaattaagaatgtgatgtaggatgatctttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50424" stop="53235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50724" g_stop="50824" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52479" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="254" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52480" i_stop="52619" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52620" g_stop="52935" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="570" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U315042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50724" e_stop="50824"/>
          <exon e_start="52327" e_stop="52479"/>
          <exon e_start="52620" e_stop="52935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</genome_strand>
        <mrna_strand>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA............................................................................................................................................GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334940" ref_strand="+" ref_description="SGN-U334940        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A.F/Z, identical to GI:2407800 | chr3:20207248-20208628 FORWARD | Aliases: T14E10.130(evalue: 3e-29, score=125) genbank/nr: gi|15232536|ref|NP_191019.1| histone H2A.F/Z [Arabidopsis thaliana] gi|11275239|pir||T47615 histone H2A.F/Z - Arabidopsis thaliana gi|2407800|emb|CAA73155.1| histone H2A.F/Z [Arabidopsis thaliana] gi|7258359|emb|CAB77576.1| histone H2A.F/Z [Arabidopsis thaliana] gi|21592838|gb|AAM64788.1| histone H2A.F/Z [Arabidopsis thaliana] gi|28950691|gb|AAO63269.1| At3g54560 [Arabidopsis thaliana](evalue: 3e-27, score=125)">
      <seq>gaaagggctagtagcggggaagattcagctgcagcgtttttcccaaggagaaagactagaaaaaaccaatttctcgttcatctcgtgcgggtttgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgagttagctggtaatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50425" stop="52766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50725" g_stop="50824" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52327" g_stop="52466" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="238" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U334940" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50725" e_stop="50824"/>
          <exon e_start="52327" e_stop="52466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAGGTAATACATAGTTTTGGTCAGATCTTGTTTGATTTTCATTAAAAATCTCAAGTGACAGTTTAAAGTAATTGATCTACCCAAAGTATGATGACACCATAGCATAGTCAATGTAGTCCCACAGTGAGGTGAAGCTAGGACAAAGTAATTTATCTAATAGACCATTGCCAAAACACCAAGCAAATTAAACTAGCACAAATTTGAGATTAACAAACTATACCGTTACTAACTACTATTTCTACCATTAGAAAGAGAGGAGATGAAGCTAACCCACATATAGTGGAACTACTAACCGTTTACTCTAATTCTTGTTCTATGTACCTTTCTATCTTGGTTTATATCTTTACTATATGCGGGACTTATGCTATATCTTGTCTAATCACTTATCCTTAGTTCTTCAGTCTACCTTTACCTCTCCCGATTGCCTTGTTTTGTATAATTTCATTTCTAATCACATCCATTTCATCATCGTCTTCTTTTCTACATTCCAACTCTTTGTCCTATACAACAATGTTGATTTAACCTCCACTCTGTACAAGTTACTCTGAAGTATTGGTGGTACATTCTTATCACACAATAATACCTTGTATGCAAGCCTCTATTACACCCAGATCACTCTAATATCATGTATGACATCATCATTACTATCTTTGTTTTCTTGTGTTATGGACCTAAGATACTTGAAGCTTGTTCTTATTGGTATGATTTGTGCATCAATCTTCACTTCCTCCTCCGTCTCATGGTGTTGTCATTGAATTTGCACTCCAAGTAATCTAAGGTCTGTTTATTGAATTCACACTCGTCTCCAAAAGTTCTAGTCTATCCATTGCACGTTTTATCAAACAATACCATGTTATCAACAAATTACACACACCACAACACCAATGCTATCAAAAGGAAGCAAAAAACACAAAAAAAGCTCTAAGGTCCATGGGCGCTTTAAGTGTGAGGTGCAAATAAACTATGAGCTTTAATGTAAAAAGCATAACCTCCATAAGCTAATTGAGAACAAAATATTTGTTCCTTCAACAGACTTTCTTTGATCTTTGCAAATATAATCCTCTTCAATGTTTTAATCAATAAGCTTATGGATGTAATTAACATAACAGTAGGTCTTCAATTCAGTTGGGGAATATATGAAGATCTGCATATTATGATCATAAACATGCCCTCAACAATGTATAATTGCAACAAAGTGAATTACCATAAAAAGCTGTCTCATTCCAAGCCATATACTATGATATAGGATGCAACTGGCGCTGGCTTTGCAGACACTTTGAAAATGCACACATAAAAAACAAACTATGATGCATCTTACTCTTTTGGGACCTTGAATTTTTTGGATTCATCAAATATTTTTAGAGGTGACATCATTTTTTGATCTATTAGCTGTAAAAAGTGCATAACATTTAAACTGTCTCTAGAATTTTTTATGGATTTTTCTTTACTCCAGAACCCTCCTACCATTCTGATATAATTGTTTTGACATATTTGGGGGATTTTAGTTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</genome_strand>
        <mrna_strand>GAAAGGGCTAGTAGCGGGGAAGA-TTCAGCTGCAGCGTTTTTC-CCAAGGAGAAAGACTAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342447" ref_strand="+" ref_description="SGN-U342447        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcggaaactgaggttggggatgcgcaccagatttctgcttatgtcttgaaatgttcggaggccacatcatgttgtagtgtacggatagttgcatgaagtgtgatgatggtagcacttgggacaatatctgtgaaactgccttatctatctaggtttgtctgtaatgtaaatgaagatagaattagtgagaaatagtggtcaagtcatgaaaccttttttgcttttcgtataacagctagtcgccctcttcaatattgattttaggctgcagcatttccctgttgatggaaccattctcaatgatcttgcttacttggaattatacgtccaattttgttgctgggagctggagacaaaccagcggaactgcatgacatagaatgtgaatgggtcatgctctctgatgatccttgacgtttaaaataagctttcctgttccgttgtttgatcgaaataacgtgattgaaggcttaatttcttcttcaagtttgtcatttcagctatttattgactaggactgcattgcaggatactgcacatgcgaagaagtattgggaaagaattgncttctcctctacttatgtttctttccctttatataatacctacctttctnctgtaaaatcttaagttcaagatcatgatagcacatgtatgattatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="-" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60250" stop="58986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59950" g_stop="59286" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="-" ref_id="SGN-U342447" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59950" e_stop="59286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</genome_strand>
        <mrna_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGNCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTNCTGTAAAATCTTAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327120" ref_strand="+" ref_description="SGN-U327120        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, low similarity to N-methyl-D-aspartate receptor-associated protein (Drosophila melanogaster) GI:567104; contains Pfam profile PF01027: Uncharacterized protein family UPF0005 | chr1:730148-731379 FORWARD | Aliases: F10O3.11, F10O3_11(evalue: 7e-98, score=354) genbank/nr: gi|61889383|emb|CAI53895.2| putative receptor associated protein [Capsicum chinense] (evalue: 2e-97, score=358)">
      <seq>gattgtaagatgtggcagcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatttattgtataaatcaataattttttttattacgaaactcgttgttagtatttgtaaggttgatggatatgtgagtgaccaaaagttgatagctgaaatattatattgtataaaggggttatatctgcaaaacatttgccctttggggcaaagttgaaatatatagtagccgcaaaaaagaagtttgagtgaatcagccctacttttcggcctaaatccaaatttggttgctgttttggcaacaattttacttgaagcaaaactcatattgggctttgtcacccatgccttggaaagtcagatcttgggcttcaactagcaggtgtacttgggaaaaatcccaaagtttgtgggtgtactatagttcgacttcatatatagacagattgagaatgaacgttttctttgaaaaaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0217M17-8Hj5U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0217M17.2" temp_strand="+" temp_description="C06HBa0217M17.2  AC216650.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0217M17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66655" stop="68694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66954" g_stop="67224" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67304" g_stop="67417" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="385" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67487" g_stop="67644" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="543" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67722" g_stop="68393" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="1215" r_length="672" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1241"/>
      <MATCH_line gen_id="C06HBa0217M17.2" gen_strand="+" ref_id="SGN-U327120" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0217M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66954" e_stop="67224"/>
          <exon e_start="67304" e_stop="67417"/>
          <exon e_start="67487" e_stop="67644"/>
          <exon e_start="67722" e_stop="68393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</genome_strand>
        <mrna_strand>GATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATTTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACCCATGCCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6486" PGL_stop="2583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6486" e_stop="6220"/>
            <exon e_start="5269" e_stop="5174"/>
            <exon e_start="5073" e_stop="4855"/>
            <exon e_start="3854" e_stop="3758"/>
            <exon e_start="2826" e_stop="2764"/>
            <exon e_start="2665" e_stop="2583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6486" e_stop="6220" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6219" i_stop="5270" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5269" e_stop="5174" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.091">
            <gDNA_intron_boundary i_start="5173" i_stop="5074" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5073" e_stop="4855" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4854" i_stop="3855" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3854" e_stop="3758" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="3757" i_stop="2827" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2826" e_stop="2764" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="2763" i_stop="2666" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2665" e_stop="2583" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6486" stop="6220"/>
              <exon start="5269" stop="5174"/>
              <exon start="5073" stop="4855"/>
              <exon start="3854" stop="3758"/>
              <exon start="2826" stop="2764"/>
              <exon start="2665" stop="2583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</gDNA_template>
            <first_frame> L  I  H  T  T  L  Y  P  K  F  H  C  T  H  K  V  N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  I  E  G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K </first_frame>
            <second_frame>  *  Y  I  Q  L  C  I  P  S  F  T  V  P  T  K  *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  K  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G   </second_frame>
            <third_frame>   D  T  Y  N  F  V  S  Q  V  S  L  Y  P  Q  S  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : D  *  R  L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6486" stop="6220"/>
                    <exon start="5269" stop="5174"/>
                    <exon start="5073" stop="4855"/>
                    <exon start="3854" stop="3758"/>
                    <exon start="2826" stop="2764"/>
                    <exon start="2665" stop="2583"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHTTLYPKFHCTHKVNSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEIEGYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="30565" PGL_stop="31460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30565" e_stop="30676"/>
            <exon e_start="31039" e_stop="31460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30565" e_stop="30676" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="30677" i_stop="31038" i_length="362"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31039" e_stop="31460" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="30676"/>
              <exon start="31039" stop="31460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACGAACACCAATGGCTTCCAGCATCACTGCTTGTACCACCACCTCTTTAGCCGCCCGTGAGGCCCTCCTACATAAGGCATCAGCTCTATCCCGCCCTTCTGTTCTTG : GGTTGCCATCAATGAGGAAGAATGTGGGAAGGGTGAAGTGTTCAATGGAAAGAGAGGATTCAAAATCAGGAATTTGTGGATCATTAGTGGCAGCAACACTATCATTCAGCCCAACAGCAATGGCTTTAGTGGATGAAAGAATGAGTACAGAAGGAACTGGGCTTCCATTTGGGCTCAGTAATAATCTTCTTGGTTGGATCCTTTTTGGAGTCTTTGGTTTGGTTTGGTCTCTTTATACTGTTTACACTTCTAGCCTTGATGAGGATGAAGATTCTGCAATGTCCCTTTAATTTCAACTTCAGATTACTATGTAAAATCATGAATTCTATTCTATCATTTCCTCTCTTTACCTTCTTCCATGGCTAATTGTACTATATACATACGAATTACTATTACTAATTATCATTTAGTGCATGTTAAAA</gDNA_template>
            <first_frame> K  K  R  T  P  M  A  S  S  I  T  A  C  T  T  T  S  L  A  A  R  E  A  L  L  H  K  A  S  A  L  S  R  P  S  V  L   : G  L  P  S  M  R  K  N  V  G  R  V  K  C  S  M  E  R  E  D  S  K  S  G  I  C  G  S  L  V  A  A  T  L  S  F  S  P  T  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  F  G  V  F  G  L  V  W  S  L  Y  T  V  Y  T  S  S  L  D  E  D  E  D  S  A  M  S  L  *  F  Q  L  Q  I  T  M  *  N  H  E  F  Y  S  I  I  S  S  L  Y  L  L  P  W  L  I  V  L  Y  T  Y  E  L  L  L  L  I  I  I  *  C  M  L  K </first_frame>
            <second_frame>  K  N  E  H  Q  W  L  P  A  S  L  L  V  P  P  P  L  *  P  P  V  R  P  S  Y  I  R  H  Q  L  Y  P  A  L  L  F  L  :  G  C  H  Q  *  G  R  M  W  E  G  *  S  V  Q  W  K  E  R  I  Q  N  Q  E  F  V  D  H  *  W  Q  Q  H  Y  H  S  A  Q  Q  Q  W  L  *  W  M  K  E  *  V  Q  K  E  L  G  F  H  L  G  S  V  I  I  F  L  V  G  S  F  L  E  S  L  V  W  F  G  L  F  I  L  F  T  L  L  A  L  M  R  M  K  I  L  Q  C  P  F  N  F  N  F  R  L  L  C  K  I  M  N  S  I  L  S  F  P  L  F  T  F  F  H  G  *  L  Y  Y  I  H  T  N  Y  Y  Y  *  L  S  F  S  A  C  *   </second_frame>
            <third_frame>   K  T  N  T  N  G  F  Q  H  H  C  L  Y  H  H  L  F  S  R  P  *  G  P  P  T  *  G  I  S  S  I  P  P  F  C  S  W :   V  A  I  N  E  E  E  C  G  K  G  E  V  F  N  G  K  R  G  F  K  I  R  N  L  W  I  I  S  G  S  N  T  I  I  Q  P  N  S  N  G  F  S  G  *  K  N  E  Y  R  R  N  W  A  S  I  W  A  Q  *  *  S  S  W  L  D  P  F  W  S  L  W  F  G  L  V  S  L  Y  C  L  H  F  *  P  *  *  G  *  R  F  C  N  V  P  L  I  S  T  S  D  Y  Y  V  K  S  *  I  L  F  Y  H  F  L  S  L  P  S  S  M  A  N  C  T  I  Y  I  R  I  T  I  T  N  Y  H  L  V  H  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30565" stop="30676"/>
                    <exon start="31039" stop="31328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRTPMASSITACTTTSLAAREALLHKASALSRPSVLGLPSMRKNVGRVKCSMEREDSKSGICGSLVAATLSFSPTAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLVWSLYTVYTSSLDEDEDSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33288" PGL_stop="35523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33288" e_stop="34111"/>
            <exon e_start="34361" e_stop="34462"/>
            <exon e_start="35207" e_stop="35351"/>
            <exon e_start="35431" e_stop="35523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.966" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33288" e_stop="34111" e_length="824"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.982">
            <gDNA_intron_boundary i_start="34112" i_stop="34360" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34361" e_stop="34462" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.900">
            <gDNA_intron_boundary i_start="34463" i_stop="35206" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35207" e_stop="35351" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.929">
            <gDNA_intron_boundary i_start="35352" i_stop="35430" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35431" e_stop="35523" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33288" stop="33965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33931" stop="34111"/>
              <exon start="34361" stop="34462"/>
              <exon start="35207" stop="35351"/>
              <exon start="35431" stop="35523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACTACAGAAAACTCCCGCGCCATTCTCCCACCTTTTATTTTTACTCATCTCTTACCTCAATTTTACCTACACATTTCACTGTCGCCGCCGGCAAGCTTCCGATTAACAATGGCGGATCCTAAATTTATATATATATAAAGCTCTAAAAAATTCTGATCGGAAGAACTCACTGTACAATTTTTTTTGGATCCGCCAATTGACGGCGAAATCGAGATGCAGGGCCGTCAACCCCATCCCCACACCACCACTCCTATATCCGAAGTTATCCTTCCAAAGCGTGGCAAGAAGCGGGGTAGCTACAGTTGTGGCCGATGCGGTGTACCCAAAAAAGGCCATGTTTGCAATTTTCCTAAGAACCTTAATCCGATTGATAATCCCAGTCCCAATCCCAATTCGTCACTCTTAGCTTCCCCACCCTCTGTTGTTCGTCCTCAGCCGCCACCTCCCCTGCCGCAACGCCATGTACTCCCACAGCTCCGGCGAGCACTTTCATTTGATGACGTTGATGTTAATGATTCACCTGGATCTGATGACGAGGGGGATTTCTCCGATCTGGATAACGAATCGGATCGAGTTGGGTCCGGATCGGGGATAGGGACGTTGCCTTCGAGTTGTTTATGGGAAGTGTTTAAGAGATTACCGCCTCCGGCGTTGCTTTCATCGGCGAGGGTTTGTAAGGGGTGGTTGGAAAGTTCTAGAAGGATCTGGAAGTCTGCTGTGGAGCTTAGACTTAGGGTTCCCGTAAATGCCCAGATTGGACTTGTCGGGTCGGTGTTAAAGAAATGTCCAGGGCTTGTTAAGCTTTCTCTTAGAATGGAAAG : TGACATTGATGCTACCATGTTGGCCTGCATTGCTTTTTCCTGTCCTAAACTGGATTCGATGGAGATACTTATGTGTAATACCTCAGTCAATCGGATCACTGG : GGATGAATTGGGTCGTTTTGTTGCTGAGAAAAGATCTCTTACTAATCTCAAGATGGAAGGTTGCTCTAATCTTGGGGGTTTCACTCTTTGCTCAACCAGTCTTTCAACTCTTTCGCTTTCAGATCTCTATTGTCATGCTAAGATG : GTCTTCAACTGCCCCAACTTGAAGGATGTTTCCCTGGATTTTTCTCACCAAGAAAATGACACCACCGATCTTACTCTCATGGTCGATGGTCTT</gDNA_template>
            <first_frame> Q  T  T  E  N  S  R  A  I  L  P  P  F  I  F  T  H  L  L  P  Q  F  Y  L  H  I  S  L  S  P  P  A  S  F  R  L  T  M  A  D  P  K  F  I  Y  I  *  S  S  K  K  F  *  S  E  E  L  T  V  Q  F  F  L  D  P  P  I  D  G  E  I  E  M  Q  G  R  Q  P  H  P  H  T  T  T  P  I  S  E  V  I  L  P  K  R  G  K  K  R  G  S  Y  S  C  G  R  C  G  V  P  K  K  G  H  V  C  N  F  P  K  N  L  N  P  I  D  N  P  S  P  N  P  N  S  S  L  L  A  S  P  P  S  V  V  R  P  Q  P  P  P  P  L  P  Q  R  H  V  L  P  Q  L  R  R  A  L  S  F  D  D  V  D  V  N  D  S  P  G  S  D  D  E  G  D  F  S  D  L  D  N  E  S  D  R  V  G  S  G  S  G  I  G  T  L  P  S  S  C  L  W  E  V  F  K  R  L  P  P  P  A  L  L  S  S  A  R  V  C  K  G  W  L  E  S  S  R  R  I  W  K  S  A  V  E  L  R  L  R  V  P  V  N  A  Q  I  G  L  V  G  S  V  L  K  K  C  P  G  L  V  K  L  S  L  R  M  E  S :   D  I  D  A  T  M  L  A  C  I  A  F  S  C  P  K  L  D  S  M  E  I  L  M  C  N  T  S  V  N  R  I  T  G :   D  E  L  G  R  F  V  A  E  K  R  S  L  T  N  L  K  M  E  G  C  S  N  L  G  G  F  T  L  C  S  T  S  L  S  T  L  S  L  S  D  L  Y  C  H  A  K  M  :  V  F  N  C  P  N  L  K  D  V  S  L  D  F  S  H  Q  E  N  D  T  T  D  L  T  L  M  V  D  G  L </first_frame>
            <second_frame>  K  L  Q  K  T  P  A  P  F  S  H  L  L  F  L  L  I  S  Y  L  N  F  T  Y  T  F  H  C  R  R  R  Q  A  S  D  *  Q  W  R  I  L  N  L  Y  I  Y  K  A  L  K  N  S  D  R  K  N  S  L  Y  N  F  F  W  I  R  Q  L  T  A  K  S  R  C  R  A  V  N  P  I  P  T  P  P  L  L  Y  P  K  L  S  F  Q  S  V  A  R  S  G  V  A  T  V  V  A  D  A  V  Y  P  K  K  A  M  F  A  I  F  L  R  T  L  I  R  L  I  I  P  V  P  I  P  I  R  H  S  *  L  P  H  P  L  L  F  V  L  S  R  H  L  P  C  R  N  A  M  Y  S  H  S  S  G  E  H  F  H  L  M  T  L  M  L  M  I  H  L  D  L  M  T  R  G  I  S  P  I  W  I  T  N  R  I  E  L  G  P  D  R  G  *  G  R  C  L  R  V  V  Y  G  K  C  L  R  D  Y  R  L  R  R  C  F  H  R  R  G  F  V  R  G  G  W  K  V  L  E  G  S  G  S  L  L  W  S  L  D  L  G  F  P  *  M  P  R  L  D  L  S  G  R  C  *  R  N  V  Q  G  L  L  S  F  L  L  E  W  K   : V  T  L  M  L  P  C  W  P  A  L  L  F  P  V  L  N  W  I  R  W  R  Y  L  C  V  I  P  Q  S  I  G  S  L   : G  M  N  W  V  V  L  L  L  R  K  D  L  L  L  I  S  R  W  K  V  A  L  I  L  G  V  S  L  F  A  Q  P  V  F  Q  L  F  R  F  Q  I  S  I  V  M  L  R  W :   S  S  T  A  P  T  *  R  M  F  P  W  I  F  L  T  K  K  M  T  P  P  I  L  L  S  W  S  M  V   </second_frame>
            <third_frame>   N  Y  R  K  L  P  R  H  S  P  T  F  Y  F  Y  S  S  L  T  S  I  L  P  T  H  F  T  V  A  A  G  K  L  P  I  N  N  G  G  S  *  I  Y  I  Y  I  K  L  *  K  I  L  I  G  R  T  H  C  T  I  F  F  G  S  A  N  *  R  R  N  R  D  A  G  P  S  T  P  S  P  H  H  H  S  Y  I  R  S  Y  P  S  K  A  W  Q  E  A  G  *  L  Q  L  W  P  M  R  C  T  Q  K  R  P  C  L  Q  F  S  *  E  P  *  S  D  *  *  S  Q  S  Q  S  Q  F  V  T  L  S  F  P  T  L  C  C  S  S  S  A  A  T  S  P  A  A  T  P  C  T  P  T  A  P  A  S  T  F  I  *  *  R  *  C  *  *  F  T  W  I  *  *  R  G  G  F  L  R  S  G  *  R  I  G  S  S  W  V  R  I  G  D  R  D  V  A  F  E  L  F  M  G  S  V  *  E  I  T  A  S  G  V  A  F  I  G  E  G  L  *  G  V  V  G  K  F  *  K  D  L  E  V  C  C  G  A  *  T  *  G  S  R  K  C  P  D  W  T  C  R  V  G  V  K  E  M  S  R  A  C  *  A  F  S  *  N  G  K  :  *  H  *  C  Y  H  V  G  L  H  C  F  F  L  S  *  T  G  F  D  G  D  T  Y  V  *  Y  L  S  Q  S  D  H  W  :  G  *  I  G  S  F  C  C  *  E  K  I  S  Y  *  S  Q  D  G  R  L  L  *  S  W  G  F  H  S  L  L  N  Q  S  F  N  S  F  A  F  R  S  L  L  S  C  *  D   : G  L  Q  L  P  Q  L  E  G  C  F  P  G  F  F  S  P  R  K  *  H  H  R  S  Y  S  H  G  R  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33447" stop="34111"/>
                    <exon start="34361" stop="34462"/>
                    <exon start="35207" stop="35351"/>
                    <exon start="35431" stop="35523"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEELTVQFFLDPPIDGEIEMQGRQPHPHTTTPISEVILPKRGKKRGSYSCGRCGVPKKGHVCNFPKNLNPIDNPSPNPNSSLLASPPSVVRPQPPPPLPQRHVLPQLRRALSFDDVDVNDSPGSDDEGDFSDLDNESDRVGSGSGIGTLPSSCLWEVFKRLPPPALLSSARVCKGWLESSRRIWKSAVELRLRVPVNAQIGLVGSVLKKCPGLVKLSLRMESDIDATMLACIAFSCPKLDSMEILMCNTSVNRITGDELGRFVAEKRSLTNLKMEGCSNLGGFTLCSTSLSTLSLSDLYCHAKMVFNCPNLKDVSLDFSHQENDTTDLTLMVDGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38302" PGL_stop="37541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38302" e_stop="37541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="38302" e_stop="37541" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38302" stop="37541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATAGATTCATCTACTTCCTCAATTGAAAAATCTTTCTTTTTAATTCATTCCACTAAAAAATTAGAAACCATCCAATGGCAAACAACTAAAGATGCATGCAACCTTCTAACAGGATGAAAATGCACTCACTCTATTCATTTTGATTTCCATCTGAAGAAAAGAAAAGTTGACATTCTTTTGGTCAAAATATGACCATAAGTTTCAAAATGGCAAGTTTAGTTTATTATTGTAGGGGAATACAGTTGGAGCAGTTTCTTTAGCTTTTCTTCTTACCTATATTGATATTACCAGAATTTGTTTTATAATTTATTCTCTAATTATGGCTCACAATAATACACTAACAATGCGACAGGCACTGGACTAGTTTACAAGCACAGTACAACAGCGCTTCGAAATCCTCTTAGTCTTCTTGTCATTTGGCTGCAAAATTAGTAAAACATGTCGGTCTTTGAATGTATGTATATTAGAATTAGAGAGAGAACTAATTTCACTTTATGAGTTTATTACCTGTGGGCTGAATAAATCCGGAACCTTGATCCTTTTAGAGCCATCAGGAAGACGTTTGCAATGAGAATGATCTTCCACACCCATAAAATCTGCGCATACCTTCATGGAACCAAAAAAAAAAAACAAATTACTTCCGGAAACAGCCTTTCTACCCCACAAAGGCAGGGATATGATCTGCGTACATGTTACCATACCTAGATCCCACTTGTGAGATTACACTAGCATGTTGTTAGATAACAAATTACTTGTTCC</gDNA_template>
            <first_frame> H  I  D  S  S  T  S  S  I  E  K  S  F  F  L  I  H  S  T  K  K  L  E  T  I  Q  W  Q  T  T  K  D  A  C  N  L  L  T  G  *  K  C  T  H  S  I  H  F  D  F  H  L  K  K  R  K  V  D  I  L  L  V  K  I  *  P  *  V  S  K  W  Q  V  *  F  I  I  V  G  E  Y  S  W  S  S  F  F  S  F  S  S  Y  L  Y  *  Y  Y  Q  N  L  F  Y  N  L  F  S  N  Y  G  S  Q  *  Y  T  N  N  A  T  G  T  G  L  V  Y  K  H  S  T  T  A  L  R  N  P  L  S  L  L  V  I  W  L  Q  N  *  *  N  M  S  V  F  E  C  M  Y  I  R  I  R  E  R  T  N  F  T  L  *  V  Y  Y  L  W  A  E  *  I  R  N  L  D  P  F  R  A  I  R  K  T  F  A  M  R  M  I  F  H  T  H  K  I  C  A  Y  L  H  G  T  K  K  K  K  Q  I  T  S  G  N  S  L  S  T  P  Q  R  Q  G  Y  D  L  R  T  C  Y  H  T  *  I  P  L  V  R  L  H  *  H  V  V  R  *  Q  I  T  C  S </first_frame>
            <second_frame>  I  *  I  H  L  L  P  Q  L  K  N  L  S  F  *  F  I  P  L  K  N  *  K  P  S  N  G  K  Q  L  K  M  H  A  T  F  *  Q  D  E  N  A  L  T  L  F  I  L  I  S  I  *  R  K  E  K  L  T  F  F  W  S  K  Y  D  H  K  F  Q  N  G  K  F  S  L  L  L  *  G  N  T  V  G  A  V  S  L  A  F  L  L  T  Y  I  D  I  T  R  I  C  F  I  I  Y  S  L  I  M  A  H  N  N  T  L  T  M  R  Q  A  L  D  *  F  T  S  T  V  Q  Q  R  F  E  I  L  L  V  F  L  S  F  G  C  K  I  S  K  T  C  R  S  L  N  V  C  I  L  E  L  E  R  E  L  I  S  L  Y  E  F  I  T  C  G  L  N  K  S  G  T  L  I  L  L  E  P  S  G  R  R  L  Q  *  E  *  S  S  T  P  I  K  S  A  H  T  F  M  E  P  K  K  K  N  K  L  L  P  E  T  A  F  L  P  H  K  G  R  D  M  I  C  V  H  V  T  I  P  R  S  H  L  *  D  Y  T  S  M  L  L  D  N  K  L  L  V   </second_frame>
            <third_frame>   Y  R  F  I  Y  F  L  N  *  K  I  F  L  F  N  S  F  H  *  K  I  R  N  H  P  M  A  N  N  *  R  C  M  Q  P  S  N  R  M  K  M  H  S  L  Y  S  F  *  F  P  S  E  E  K  K  S  *  H  S  F  G  Q  N  M  T  I  S  F  K  M  A  S  L  V  Y  Y  C  R  G  I  Q  L  E  Q  F  L  *  L  F  F  L  P  I  L  I  L  P  E  F  V  L  *  F  I  L  *  L  W  L  T  I  I  H  *  Q  C  D  R  H  W  T  S  L  Q  A  Q  Y  N  S  A  S  K  S  S  *  S  S  C  H  L  A  A  K  L  V  K  H  V  G  L  *  M  Y  V  Y  *  N  *  R  E  N  *  F  H  F  M  S  L  L  P  V  G  *  I  N  P  E  P  *  S  F  *  S  H  Q  E  D  V  C  N  E  N  D  L  P  H  P  *  N  L  R  I  P  S  W  N  Q  K  K  K  T  N  Y  F  R  K  Q  P  F  Y  P  T  K  A  G  I  *  S  A  Y  M  L  P  Y  L  D  P  T  C  E  I  T  L  A  C  C  *  I  T  N  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37935" stop="37729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSTVQQRFEILLVFLSFGCKISKTCRSLNVCILELERELISLYEFITCGLNKSGTLILLEPSGRRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40864" PGL_stop="41147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40864" e_stop="41015"/>
            <exon e_start="41092" e_stop="41147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.871" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40864" e_stop="41015" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.871">
            <gDNA_intron_boundary i_start="41016" i_stop="41091" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41092" e_stop="41147" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40864" stop="41015"/>
              <exon start="41092" stop="41147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCGATCCTATCGAAAGAACATTTTAGAAGCGAGCTATGTTAAAGTGAGCATGGATGGTGCGGCTTATTTAAGGAAAATTGATCTTAATACTTACAAAAGTTATCCACAATTACTCAAGGCTTTAGAGAACATGTTCAAGTGCTCTATTG : ATGTATATTCAGAAACAGATGGATACAACGGATGTAATTATATACCAACTTACGAA</gDNA_template>
            <first_frame> G  S  I  L  S  K  E  H  F  R  S  E  L  C  *  S  E  H  G  W  C  G  L  F  K  E  N  *  S  *  Y  L  Q  K  L  S  T  I  T  Q  G  F  R  E  H  V  Q  V  L  Y  * :   C  I  F  R  N  R  W  I  Q  R  M  *  L  Y  T  N  L  R  </first_frame>
            <second_frame>  V  R  S  Y  R  K  N  I  L  E  A  S  Y  V  K  V  S  M  D  G  A  A  Y  L  R  K  I  D  L  N  T  Y  K  S  Y  P  Q  L  L  K  A  L  E  N  M  F  K  C  S  I   : D  V  Y  S  E  T  D  G  Y  N  G  C  N  Y  I  P  T  Y  E </second_frame>
            <third_frame>   F  D  P  I  E  R  T  F  *  K  R  A  M  L  K  *  A  W  M  V  R  L  I  *  G  K  L  I  L  I  L  T  K  V  I  H  N  Y  S  R  L  *  R  T  C  S  S  A  L  L  :  M  Y  I  Q  K  Q  M  D  T  T  D  V  I  I  Y  Q  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41015"/>
                    <exon start="41092" stop="41147"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSYRKNILEASYVKVSMDGAAYLRKIDLNTYKSYPQLLKALENMFKCSIDVYSETDGYNGCNYIPTYE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50458" PGL_stop="53145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50458" e_stop="50481"/>
            <exon e_start="50692" e_stop="50824"/>
            <exon e_start="52327" e_stop="52879"/>
            <exon e_start="53135" e_stop="53145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.486" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.444" e_score="1.000"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50458" e_stop="50481" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.486" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50482" i_stop="50691" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50692" e_stop="50824" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52327" e_stop="52879" e_length="553"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.444">
            <gDNA_intron_boundary i_start="52880" i_stop="53134" i_length="255"/>
          </intron>
          <exon e_serial="4" e_score="0.818">
            <gDNA_exon_boundary e_start="53135" e_stop="53145" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50458" stop="50481"/>
              <exon start="50692" stop="50824"/>
              <exon start="52327" stop="52879"/>
              <exon start="53135" stop="53145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50824"/>
              <exon start="52327" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGAAAATTTAGCAGAAAATCAG : TTTTCAAATAAGGAAAATGGCAGGAAAAGGAGGGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAG : ATCAAAGAAAA</gDNA_template>
            <first_frame> W  E  N  L  A  E  N  Q  :  F  S  N  K  E  N  G  R  K  R  R  E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *  S  E  E  N  H  S  Q  A  L  A  T  G  H  S  W  R  *  G  T  *  H  P  Y  Q  R  Y  Y  C  W  W  W  C  H  P  S  H  S  Q  V  P  H  K  Q  N  H  Q  G  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R :   S  K  K  </first_frame>
            <second_frame>  G  K  I  *  Q  K  I  S :   F  Q  I  R  K  M  A  G  K  G  G  K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *   : D  Q  R  K </second_frame>
            <third_frame>   G  K  F  S  R  K  S   : V  F  K  *  G  K  W  Q  E  K  E  G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K  *  R  E  S  L  P  G  T  C  N  W  P  F  V  E  M  R  N  L  T  P  L  S  K  V  L  L  L  V  V  V  S  S  L  T  F  T  S  P  S  *  T  K  P  P  R  S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  :  I  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50471" stop="50481"/>
                    <exon start="50692" stop="50824"/>
                    <exon start="52327" stop="52623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKISFQIRKMAGKGGKGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50724" e_stop="50824"/>
            <exon e_start="52327" e_stop="52479"/>
            <exon e_start="52620" e_stop="52935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50724" e_stop="50824" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="50825" i_stop="52326" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52327" e_stop="52479" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52480" i_stop="52619" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52620" e_stop="52935" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50724" stop="50824"/>
              <exon start="52327" stop="52479"/>
              <exon start="52620" stop="52935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50824"/>
              <exon start="52327" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAGGGCTAGTAGCGGGGAAGACAACAGCTGCAGCGGCTGCCAACAAGGAGAAAGACAAGAAAAAACCAATTTCTCGTTCATCTCGTGCGGGTTTGCAG : TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAA : GTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTTGGTATGTGGCTTGTTGATGCATGTATGACACTGTTTATCTTGACACTCAGTTTCCAATATAGTGTCTGCCAAAAGTGTTTGAGGTCATCTGTATTGTTATCAAGGAATTAAGAATGTGATGTAGGATGATCTTTATCTG</gDNA_template>
            <first_frame> G  K  G  *  *  R  G  R  Q  Q  L  Q  R  L  P  T  R  R  K  T  R  K  N  Q  F  L  V  H  L  V  R  V  C  S :   F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K :   *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L  L  V  C  G  L  L  M  H  V  *  H  C  L  S  *  H  S  V  S  N  I  V  S  A  K  S  V  *  G  H  L  Y  C  Y  Q  G  I  K  N  V  M  *  D  D  L  Y  L </first_frame>
            <second_frame>  E  R  A  S  S  G  E  D  N  S  C  S  G  C  Q  Q  G  E  R  Q  E  K  T  N  F  S  F  I  S  C  G  F  A   : V  S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *   : S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  W  Y  V  A  C  *  C  M  Y  D  T  V  Y  L  D  T  Q  F  P  I  *  C  L  P  K  V  F  E  V  I  C  I  V  I  K  E  L  R  M  *  C  R  M  I  F  I   </second_frame>
            <third_frame>   K  G  L  V  A  G  K  T  T  A  A  A  A  A  N  K  E  K  D  K  K  K  P  I  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  :  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V  G  M  W  L  V  D  A  C  M  T  L  F  I  L  T  L  S  F  Q  Y  S  V  C  Q  K  C  L  R  S  S  V  L  L  S  R  N  *  E  C  D  V  G  *  S  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50726" stop="50824"/>
                    <exon start="52327" stop="52479"/>
                    <exon start="52620" stop="52655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGLVAGKTTAAAAANKEKDKKKPISRSSRAGLQFPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKFSCVILDVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50725" stop="50824"/>
                    <exon start="52327" stop="52448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERASSGEDNSCSGCQQGERQEKTNFSFISCGFAVSSGKNSPSAQDQNLCPWQGWSNSSCLLCCNSGVPDCRGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="59950" PGL_stop="59286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59950" e_stop="59286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="59950" e_stop="59286" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59950" stop="59286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</gDNA_template>
            <first_frame> S  E  T  E  V  G  D  A  H  Q  I  S  A  Y  V  L  K  C  S  E  A  T  S  C  C  S  V  R  I  V  A  *  S  V  M  M  V  A  L  G  T  I  S  V  K  L  P  Y  L  S  R  F  V  C  N  V  N  E  D  R  I  S  E  K  *  W  S  S  H  E  T  F  F  A  F  R  I  T  A  S  R  P  L  Q  Y  *  F  *  A  A  A  F  P  C  *  W  N  H  S  Q  *  S  C  L  L  G  I  I  R  P  I  L  L  L  G  A  G  D  K  P  A  E  L  H  D  I  E  C  E  W  V  M  L  S  D  D  P  *  R  L  K  *  A  F  L  F  R  C  L  I  E  I  T  *  L  K  A  *  F  L  L  Q  V  C  H  F  S  Y  L  L  T  R  T  A  L  Q  D  T  A  H  A  K  K  Y  W  E  R  I  V  F  S  S  T  Y  V  S  F  P  L  Y  N  T  Y  L  S  P  V  K  S  E  V  Q  D  H  D  S  T  C  M  I  I   </first_frame>
            <second_frame>  R  K  L  R  L  G  M  R  T  R  F  L  L  M  S  *  N  V  R  R  P  H  H  V  V  V  Y  G  *  L  H  E  V  *  *  W  *  H  L  G  Q  Y  L  *  N  C  L  I  Y  L  G  L  S  V  M  *  M  K  I  E  L  V  R  N  S  G  Q  V  M  K  P  F  L  L  F  V  *  Q  L  V  A  L  F  N  I  D  F  R  L  Q  H  F  P  V  D  G  T  I  L  N  D  L  A  Y  L  E  L  Y  V  Q  F  C  C  W  E  L  E  T  N  Q  R  N  C  M  T  *  N  V  N  G  S  C  S  L  M  I  L  D  V  *  N  K  L  S  C  S  V  V  *  S  K  *  R  D  *  R  L  N  F  F  F  K  F  V  I  S  A  I  Y  *  L  G  L  H  C  R  I  L  H  M  R  R  S  I  G  K  E  L  S  S  P  L  L  M  F  L  S  L  Y  I  I  P  T  F  L  L  *  N  L  K  F  K  I  M  I  A  H  V  *  L  S  </second_frame>
            <third_frame>   G  N  *  G  W  G  C  A  P  D  F  C  L  C  L  E  M  F  G  G  H  I  M  L  *  C  T  D  S  C  M  K  C  D  D  G  S  T  W  D  N  I  C  E  T  A  L  S  I  *  V  C  L  *  C  K  *  R  *  N  *  *  E  I  V  V  K  S  *  N  L  F  C  F  S  Y  N  S  *  S  P  S  S  I  L  I  L  G  C  S  I  S  L  L  M  E  P  F  S  M  I  L  L  T  W  N  Y  T  S  N  F  V  A  G  S  W  R  Q  T  S  G  T  A  *  H  R  M  *  M  G  H  A  L  *  *  S  L  T  F  K  I  S  F  P  V  P  L  F  D  R  N  N  V  I  E  G  L  I  S  S  S  S  L  S  F  Q  L  F  I  D  *  D  C  I  A  G  Y  C  T  C  E  E  V  L  G  K  N  C  L  L  L  Y  L  C  F  F  P  F  I  *  Y  L  P  F  S  C  K  I  *  S  S  R  S  *  *  H  M  Y  D  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0217M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66954" PGL_stop="68393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66954" e_stop="67224"/>
            <exon e_start="67304" e_stop="67417"/>
            <exon e_start="67487" e_stop="67644"/>
            <exon e_start="67722" e_stop="68393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="66954" e_stop="67224" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67225" i_stop="67303" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67304" e_stop="67417" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="67418" i_stop="67486" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67487" e_stop="67644" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67645" i_stop="67721" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="67722" e_stop="68393" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66954" stop="67224"/>
              <exon start="67304" stop="67417"/>
              <exon start="67487" stop="67644"/>
              <exon start="67722" stop="68393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA : CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG : GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG : TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</gDNA_template>
            <first_frame> Y  C  K  M  W  Q  Q  T  W  N  T  P  Y  R  K  D  D  V  E  G  G  A  R  P  L  Y  P  A  M  L  E  N  P  Q  L  R  W  G  F  I  R  K  V  Y  S  I  L  S  L  Q  L  L  I  T  I  A  V  G  A  V  V  V  T  V  H  P  I  A  H  F  F  V  S  T  G  A  G  L  A  L  Y  I  L  L  I  I  A  P  F  I   : T  L  S  P  L  Y  Y  Y  H  Q  K  H  P  V  N  F  L  L  L  G  L  F  T  V  T  L  A  F  A  V  G  L  T  C  A  F  T  S   : G  K  V  I  L  E  S  V  I  L  T  A  A  V  V  L  S  L  T  I  Y  T  F  W  A  A  R  R  G  H  D  F  N  F  L  G  P  F  L  F  G  A  L  M  V  L  M  L  F  A  F  I  Q  :  L  L  F  P  L  G  R  L  S  V  M  I  Y  G  C  L  A  S  I  L  F  C  A  Y  I  I  Y  D  T  D  S  L  I  K  R  Y  T  Y  D  E  Y  I  W  A  A  V  G  L  Y  L  D  V  I  N  L  F  L  S  I  L  T  I  F  R  A  A  E  *  F  P  *  Q  I  N  N  K  N  V  T  F  A  L  *  R  T  L  F  I  Y  C  I  N  Q  *  F  F  L  L  R  N  S  L  L  V  F  V  R  L  M  D  M  *  V  T  K  S  *  *  L  K  Y  Y  I  V  *  R  G  Y  I  C  K  T  F  A  L  W  G  K  V  E  I  Y  S  S  R  K  K  E  V  *  V  N  Q  P  Y  F  S  A  *  I  Q  I  W  L  L  F  W  Q  Q  F  Y  L  K  Q  N  S  Y  W  A  L  S  L  M  S  W  K  V  R  S  W  A  S  T  S  R  C  T  W  E  K  S  Q  S  L  W  V  Y  Y  S  S  T  S  Y  I  D  R  L  R  M  N  V  F  F  E </first_frame>
            <second_frame>  I  V  R  C  G  S  R  R  G  I  R  L  T  G  K  M  T  W  K  A  E  Q  G  R  C  I  R  R  C  W  R  I  H  N  S  V  G  V  L  F  G  K  F  T  Q  F  C  L  Y  S  C  L  *  Q  L  Q  W  A  L  L  L  L  R  F  T  Q  L  H  I  F  L  C  Q  L  G  L  D  *  L  S  I  F  F  L  S  S  L  P  S  S  :  H  *  A  R  C  I  T  I  T  R  N  I  R  *  I  S  C  F  L  G  C  L  Q  L  L  W  P  S  L  *  D  *  L  V  P  S  P  V  :  G  K  *  Y  W  S  P  S  Y  *  P  Q  Q  L  C  L  V  *  P  Y  T  H  F  G  Q  Q  G  E  A  T  I  L  I  S  L  D  H  S  Y  L  V  P  L  W  F  S  C  C  L  P  L  F  S :   Y  C  F  L  W  V  G  S  L  *  *  S  M  A  V  *  R  P  F  C  S  A  H  I  *  F  M  I  R  I  V  *  S  S  A  T  L  T  M  S  T  S  G  L  L  S  D  C  I  W  T  L  S  I  Y  S  Y  L  Y  *  L  F  L  E  L  L  N  S  F  L  D  K  *  I  T  K  M  L  H  L  L  Y  K  E  H  C  L  S  I  V  *  I  N  N  F  F  Y  Y  E  T  R  C  *  Y  L  *  G  *  W  I  C  E  *  P  K  V  D  S  *  N  I  I  L  Y  K  G  V  I  S  A  K  H  L  P  F  G  A  K  L  K  Y  I  V  A  A  K  K  K  F  E  *  I  S  P  T  F  R  P  K  S  K  F  G  C  C  F  G  N  N  F  T  *  S  K  T  H  I  G  L  C  H  S  C  L  G  K  S  D  L  G  L  Q  L  A  G  V  L  G  K  N  P  K  V  C  G  C  T  I  V  R  L  H  I  *  T  D  *  E  *  T  F  S  L   </second_frame>
            <third_frame>   L  *  D  V  A  A  D  V  E  Y  A  L  P  E  R  *  R  G  R  R  S  K  A  V  V  S  G  D  V  G  E  S  T  T  P  L  G  F  Y  S  E  S  L  L  N  F  V  S  T  V  A  Y  N  N  C  S  G  R  C  C  C  Y  G  S  P  N  C  T  F  F  C  V  N  W  G  W  I  S  S  L  Y  S  S  Y  H  R  S  L  H  H :   I  E  P  V  V  L  L  S  P  E  T  S  G  E  F  L  A  S  W  V  V  Y  S  Y  S  G  L  R  C  R  I  N  L  C  L  H  Q  W :   E  S  N  I  G  V  R  H  I  N  R  S  S  C  A  *  F  D  H  I  H  I  L  G  S  K  E  R  P  R  F  *  F  P  W  T  I  L  I  W  C  P  Y  G  S  H  V  V  C  L  Y  S   : V  T  V  S  S  G  *  A  L  C  D  D  L  W  L  F  S  V  H  F  V  L  R  I  Y  N  L  *  Y  G  *  F  N  Q  A  L  H  L  R  *  V  H  L  G  C  C  R  T  V  S  G  R  Y  Q  S  I  L  I  Y  I  D  Y  F  *  S  C  *  I  V  S  L  T  N  K  *  Q  K  C  Y  I  C  S  I  K  N  I  V  Y  L  L  Y  K  S  I  I  F  F  I  T  K  L  V  V  S  I  C  K  V  D  G  Y  V  S  D  Q  K  L  I  A  E  I  L  Y  C  I  K  G  L  Y  L  Q  N  I  C  P  L  G  Q  S  *  N  I  *  *  P  Q  K  R  S  L  S  E  S  A  L  L  F  G  L  N  P  N  L  V  A  V  L  A  T  I  L  L  E  A  K  L  I  L  G  F  V  T  H  V  L  E  S  Q  I  L  G  F  N  *  Q  V  Y  L  G  K  I  P  K  F  V  G  V  L  *  F  D  F  I  Y  R  Q  I  E  N  E  R  F  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66954" stop="67224"/>
                    <exon start="67304" stop="67417"/>
                    <exon start="67487" stop="67644"/>
                    <exon start="67722" stop="67925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCKMWQQTWNTPYRKDDVEGGARPLYPAMLENPQLRWGFIRKVYSILSLQLLITIAVGAVVVTVHPIAHFFVSTGAGLALYILLIIAPFITLSPLYYYHQKHPVNFLLLGLFTVTLAFAVGLTCAFTSGKVILESVILTAAVVLSLTIYTFWAARRGHDFNFLGPFLFGALMVLMLFAFIQLLFPLGRLSVMIYGCLASILFCAYIIYDTDSLIKRYTYDEYIWAAVGLYLDVINLFLSILTIFRAAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68199" stop="68393"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLLFWQQFYLKQNSYWALSLMSWKVRSWASTSRCTWEKSQSLWVYYSSTSYIDRLRMNVFFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0217M17.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67946" stop="68140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKCYICSIKNIVYLLYKSIIFFITKLVVSICKVDGYVSDQKLIAEILYCIKGLYLQNICPLGQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 22824 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2074 bytes was the average size of a spliced alignment
$ 14424 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1803 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:24:28
-->
