<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:59:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0250I21-0rMr0/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0250I21-0rMr0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0250I21-0rMr0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7463" ref_strand="+" ref_description="SGN-M7463 C2_At2g39690 [cosii_markers]">
      <seq>gatgataacgaaagatttttgaggaatgcttatggtcttgaatatccagaacctaatgtcacattttcactatgtcgaggaagttggtcttcaccagcgctaaggatctatagaccagatgaagtcgcgaacgagcttgagagagcgaaaatggagtatttggaagcttcggtaggagtaacaagtaagaagaagataatggtgcccaagctaatgcaatggcacatgaaagactttgcggatgatatggagtctctaatagaatggatgtatagtcaattaccaagctcgtgctctttgaaaaagtcgatgatggattgtcttgatgcgggggaaaagaaatatttatcgctagctaagatgatagaggttcaaccttatgcttcagaatttcgatacttactcccactatgaacataacaattgtttgcgcgtagttgattgaactttaataatcttattattttatttgtttgtttttaaaggtctgaattgtaatcattcggacctaaaatcctcaaaaaggaaaatagaggtgttactttagatggctcaaaatttcgatacttgttcccccttacgagttatttatttgtttgccaattaattaatagttgttaaatataataattattaagcccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0250I21-0rMr0/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0250I21.2" temp_strand="-" temp_description="C06HBa0250I21.2  AC209512.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0250I21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6584" stop="4575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6284" g_stop="6186" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6185" i_stop="5421" i_length="765">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5420" g_stop="4876" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="644" r_length="545" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="691"/>
      <MATCH_line gen_id="C06HBa0250I21.2" gen_strand="-" ref_id="SGN-M7463" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0250I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6284" e_stop="6186"/>
          <exon e_start="5420" e_stop="4876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTCACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCGGTAAGTTCGTTACAATTTACGTGACACATTTTTTTCAGTCGGTTCCAAAAAAAAAGATATATTGTTATGTATAGTAATAACTTGATTTTAAGTTTTTTATTTTATTTTTGACGAAATGATTTATAATTACGTAAATATTTTGAAAAAAATGACAAAATGGTCCTTTAAATTTGAGGATGGGTTCAAAATAATCCCTTTTAAGTATGTGAAGAACAATTTTGGTCCTTAAATTTGTCAAAAGCTATAGTCTTGGTCAACCAATTCACAATTTATGTTCGTTAGGTTTGACGAAAATAGTTGTGAAAAAATGAACCATAAACGTCTAAAAGTCTAACTAAATCCTAAAATATTTAATCCACAAAATTAAATAAGACACTAAATTTTTTTTATCAGAAATTACACCTTAAATAGTTAAATCAGACTTTAGAAATAATTTTAAAATAGCAAAATTACAAAAATTGTACCTTTAAATGCAAGTTCCTTCTAATGCTTCTTTTTTTCATAGTTTTTTTAAAAATTTAATCGACGGAGTTCGTTAAATATTTGACGTAGACTAAAGTGTTAATTCTTGACAAACTTCAAGGACTAAAATTGTTCAATGAAACACTGAAGTATCTATTTTGAACCAACCCTTATACTTAAGTGACCGTTTTGTCATTTTTCAAAATATCAACCGTCTATCATAGTAGACAACAAGTCAATCTTAAACATCGTGTCCAGTTAAATACATTCAATATGAATGGAAGTTTGTAATTGTCAATGCAGCTAAGGATCTATAGACCAGATGAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTAACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCGGATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTGAAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAGATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGAACATAACAATTGTTTGCGCGTAGTTGATTGAACTTTAATAATCTTATTATTTTATTTGTTTGTTTTTAAAGGTCTGAATTGTAATCATTCGGACCTAAAATCCTCAAAAAGGAAAATAGAGGTGTTACTTTAGATGGCTCAAAATTTCGATACTTGTTCCCCCTTACGAGTTATTTATTTGTTTGCCAATTAATTAATAGTTGTTAAATATAATAATTATTAAGACCACA</genome_strand>
        <mrna_strand>GATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTCACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGATCTATAGACCAGATGAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTAACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCGGATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTGAAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAGATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGAACATAACAATTGTTTGCGCGTAGTTGATTGAACTTTAATAATCTTATTATTTTATTTGTTTGTTTTTAAAGGTCTGAATTGTAATCATTCGGACCTAAAATCCTCAAAAAGGAAAATAGAGGTGTTACTTTAGATGGCTCAAAATTTCGATACTTGTTCCCCCTTACGAGTTATTTATTTGTTTGCCAATTAATTAATAGTTGTTAAATATAATAATTATTAAGCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0250I21-0rMr0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2365" ref_strand="+" ref_description="SGN-M2365 T1921 [cos_markers]">
      <seq>atgataacgaaagatttttgaggaatgcttatggtcttgaatatccagaacctaatgtcacattttcactatgtcgaggaagttggtcttcaccagcgctaaggatctatagaccagatgaagtcgcgaacgagcttgagagagcgaaaatggagtatttggaagcttcggtaggagtaacaagtaagaagaagataatggtgcccaagctaatgcaatggcacatgaaagactttgcggatgatatggagtctctaatagaatggatgtatagtcaattaccaagctcgtgctctttgaaaaagtcgatgatggattgtcttgatgcgggggaaaagaaatatttatcgctagctaagatgatagaggttcaaccttatgcttcagaatttcgatacttactcccactatgaacataacaattgtttgcgcgtagttgattgaactttaataatcttattattttatttgtttgtttttaaaggtctgaattgtaatcattcggacctaaaatcctcaaaaaggaaaatagaggtgttactttagatggctcaaaatttcgatacttgttcccccttacgagttatttatttgtttgccaattaattaatagttgttaaatataataattattaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0250I21-0rMr0/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0250I21.2" temp_strand="-" temp_description="C06HBa0250I21.2  AC209512.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0250I21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6583" stop="4580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6283" g_stop="6186" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6185" i_stop="5421" i_length="765">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5420" g_stop="4880" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="639" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0250I21.2" gen_strand="-" ref_id="SGN-M2365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0250I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6283" e_stop="6186"/>
          <exon e_start="5420" e_stop="4880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTCACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCGGTAAGTTCGTTACAATTTACGTGACACATTTTTTTCAGTCGGTTCCAAAAAAAAAGATATATTGTTATGTATAGTAATAACTTGATTTTAAGTTTTTTATTTTATTTTTGACGAAATGATTTATAATTACGTAAATATTTTGAAAAAAATGACAAAATGGTCCTTTAAATTTGAGGATGGGTTCAAAATAATCCCTTTTAAGTATGTGAAGAACAATTTTGGTCCTTAAATTTGTCAAAAGCTATAGTCTTGGTCAACCAATTCACAATTTATGTTCGTTAGGTTTGACGAAAATAGTTGTGAAAAAATGAACCATAAACGTCTAAAAGTCTAACTAAATCCTAAAATATTTAATCCACAAAATTAAATAAGACACTAAATTTTTTTTATCAGAAATTACACCTTAAATAGTTAAATCAGACTTTAGAAATAATTTTAAAATAGCAAAATTACAAAAATTGTACCTTTAAATGCAAGTTCCTTCTAATGCTTCTTTTTTTCATAGTTTTTTTAAAAATTTAATCGACGGAGTTCGTTAAATATTTGACGTAGACTAAAGTGTTAATTCTTGACAAACTTCAAGGACTAAAATTGTTCAATGAAACACTGAAGTATCTATTTTGAACCAACCCTTATACTTAAGTGACCGTTTTGTCATTTTTCAAAATATCAACCGTCTATCATAGTAGACAACAAGTCAATCTTAAACATCGTGTCCAGTTAAATACATTCAATATGAATGGAAGTTTGTAATTGTCAATGCAGCTAAGGATCTATAGACCAGATGAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTAACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCGGATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTGAAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAGATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGAACATAACAATTGTTTGCGCGTAGTTGATTGAACTTTAATAATCTTATTATTTTATTTGTTTGTTTTTAAAGGTCTGAATTGTAATCATTCGGACCTAAAATCCTCAAAAAGGAAAATAGAGGTGTTACTTTAGATGGCTCAAAATTTCGATACTTGTTCCCCCTTACGAGTTATTTATTTGTTTGCCAATTAATTAATAGTTGTTAAATATAATAATTATTAAGAC</genome_strand>
        <mrna_strand>ATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTCACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGATCTATAGACCAGATGAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTAACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCGGATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTGAAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAGATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGAACATAACAATTGTTTGCGCGTAGTTGATTGAACTTTAATAATCTTATTATTTTATTTGTTTGTTTTTAAAGGTCTGAATTGTAATCATTCGGACCTAAAATCCTCAAAAAGGAAAATAGAGGTGTTACTTTAGATGGCTCAAAATTTCGATACTTGTTCCCCCTTACGAGTTATTTATTTGTTTGCCAATTAATTAATAGTTGTTAAATATAATAATTATTAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6284" PGL_stop="4876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6284" e_stop="6186"/>
            <exon e_start="5420" e_stop="4876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6284" e_stop="6186" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.996">
            <gDNA_intron_boundary i_start="6185" i_stop="5421" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5420" e_stop="4876" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6284" stop="6186"/>
              <exon start="5420" stop="4876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6283" stop="6186"/>
              <exon start="5420" stop="4880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTCACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCG : CTAAGGATCTATAGACCAGATGAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTAACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCGGATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTGAAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAGATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGAACATAACAATTGTTTGCGCGTAGTTGATTGAACTTTAATAATCTTATTATTTTATTTGTTTGTTTTTAAAGGTCTGAATTGTAATCATTCGGACCTAAAATCCTCAAAAAGGAAAATAGAGGTGTTACTTTAGATGGCTCAAAATTTCGATACTTGTTCCCCCTTACGAGTTATTTATTTGTTTGCCAATTAATTAATAGTTGTTAAATATAATAATTATTAAGACCACA</gDNA_template>
            <first_frame> D  D  N  E  R  F  L  R  N  A  Y  G  L  E  Y  P  E  P  N  V  T  F  S  L  C  R  G  S  W  S  S  P  A  :  L  R  I  Y  R  P  D  E  V  A  N  E  L  E  R  A  K  M  E  Y  L  E  A  S  V  G  V  T  S  K  K  K  I  M  V  P  K  L  M  Q  W  H  M  K  D  F  A  D  D  M  E  S  L  I  E  W  M  Y  S  Q  L  P  S  S  C  S  L  K  K  S  M  M  D  C  L  D  A  G  E  K  K  Y  L  S  L  A  K  M  I  E  V  Q  P  Y  A  S  E  F  R  Y  L  L  P  L  *  T  *  Q  L  F  A  R  S  *  L  N  F  N  N  L  I  I  L  F  V  C  F  *  R  S  E  L  *  S  F  G  P  K  I  L  K  K  E  N  R  G  V  T  L  D  G  S  K  F  R  Y  L  F  P  L  T  S  Y  L  F  V  C  Q  L  I  N  S  C  *  I  *  *  L  L  R  P   </first_frame>
            <second_frame>  M  I  T  K  D  F  *  G  M  L  M  V  L  N  I  Q  N  L  M  S  H  F  H  Y  V  E  E  V  G  L  H  Q  R :   *  G  S  I  D  Q  M  K  S  R  T  S  L  R  E  R  K  W  S  I  W  K  L  R  *  E  *  Q  V  R  R  R  *  W  C  P  S  *  C  N  G  T  *  K  T  L  R  M  I  W  S  L  *  *  N  G  C  I  V  N  Y  Q  A  R  A  L  *  K  S  R  *  W  I  V  L  M  R  G  K  R  N  I  Y  R  *  L  R  *  *  R  F  N  L  M  L  Q  N  F  D  T  Y  S  H  Y  E  H  N  N  C  L  R  V  V  D  *  T  L  I  I  L  L  F  Y  L  F  V  F  K  G  L  N  C  N  H  S  D  L  K  S  S  K  R  K  I  E  V  L  L  *  M  A  Q  N  F  D  T  C  S  P  L  R  V  I  Y  L  F  A  N  *  L  I  V  V  K  Y  N  N  Y  *  D  H  </second_frame>
            <third_frame>   *  *  R  K  I  F  E  E  C  L  W  S  *  I  S  R  T  *  C  H  I  F  T  M  S  R  K  L  V  F  T  S   : A  K  D  L  *  T  R  *  S  R  E  R  A  *  E  S  E  N  G  V  F  G  S  F  G  R  S  N  K  *  E  E  D  N  G  A  Q  A  N  A  M  A  H  E  R  L  C  G  *  Y  G  V  S  N  R  M  D  V  *  S  I  T  K  L  V  L  F  E  K  V  D  D  G  L  S  *  C  G  G  K  E  I  F  I  A  S  *  D  D  R  G  S  T  L  C  F  R  I  S  I  L  T  P  T  M  N  I  T  I  V  C  A  *  L  I  E  L  *  *  S  Y  Y  F  I  C  L  F  L  K  V  *  I  V  I  I  R  T  *  N  P  Q  K  G  K  *  R  C  Y  F  R  W  L  K  I  S  I  L  V  P  P  Y  E  L  F  I  C  L  P  I  N  *  *  L  L  N  I  I  I  I  K  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0250I21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6284" stop="6186"/>
                    <exon start="5420" stop="5106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDNERFLRNAYGLEYPEPNVTFSLCRGSWSSPALRIYRPDEVANELERAKMEYLEASVGVTSKKKIMVPKLMQWHMKDFADDMESLIEWMYSQLPSSCSLKKSMMDCLDAGEKKYLSLAKMIEVQPYASEFRYLLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 4048 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 5560 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5560 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:59:35
-->
