<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 06:08:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7173" ref_strand="+" ref_description="SGN-M7173 C2_At2g05170 [cosii_markers]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgtcataattttatgcgagatgaatgactttaaagaaggattgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcaagagattgggtgatttgggtaaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggagaagactgctcaaaagaagtcaaagaaatcctgacatacattgagaggggtgatatcttgcctcccattgtggttcttcagacacttgctaaaaacccgtgcctctctctctcagttatcaaagattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38635" stop="39747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38935" g_stop="39447" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-M7173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38935" e_stop="39447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6485-2" ref_strand="+" ref_description="SGN-M6485-2 C2_At1g03150-2 [cosii_markers]">
      <seq>ggccgggtgtatgctattttgggccgtcactgctcacaaaggggcatcggtggtccattaactggttatcgcccttacagattaccagaagagttccgtagagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttattgaaaaaaaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80613" stop="84552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80913" g_stop="81122" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="302" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="435" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="505" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="566" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="84252" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="890" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="891" polyA_stop="906"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-M6485-2" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6485-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80913" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCA-TGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</genome_strand>
        <mrna_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCACTGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3104" ref_strand="+" ref_description="SGN-M3104 cLET-5-C8 [est_clones]">
      <seq>agattaccagaagagttccgtatagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80690" stop="82807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80990" g_stop="81122" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="224" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82507" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-M3104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80990" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTG</genome_strand>
        <mrna_strand>AGATTACCAGAAGAGTTCCGTATAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6485" ref_strand="+" ref_description="SGN-M6485 C2_At1g03150 [cosii_markers]">
      <seq>cgaagaaaagcgaagaagagagagagagagagaaaggggatgacgacgattcgtagattcagctgcaatgaccttctccgtttcgcttctgtcaatctggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaaggtggccggactatttccacgttgcagaagctcctggcagccacatcatgggatatattatgggaaaagtagaaggtcaaggtgaatcttggcatggtcacgtcactgcagtaactgtggctcctgaataccggaggcagcaatcagccaacaaattgatgaacctgctggcaagatgtcagtgataagattgataaggcttactttgtggacctgtctgtgacagcatcaaatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80711" stop="83955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81034" g_stop="81122" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="117" r_length="89" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.757" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="208" r_length="91" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="342" r_length="134" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83655" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="390" r_length="48" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-M6485" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81034" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGG-AAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACC</genome_strand>
        <mrna_strand>AGAGAAAGGGGATGACGACGATTCGTAGATTCAGCTGCAATGACCTTCTCCGTTTCGCTTCTGTCAATCTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGGTGGCCGGACTATTTCCACGTTGCAGAAGCTCCTGGCAGCCACATCATGGGATATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTAGAAGGTCAAGGTGAATCTTGGCATGGTCACGTCACTGCAGTAACTGTGGCTCCTGAATACCGGAGGCAGCAATCAGCCAACAAATTGATGAACCTGCTGGCAAGATGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGGCTTACTTTGTGGACCTGTCTGTGACAGCATCAAATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7033" ref_strand="+" ref_description="SGN-M7033 C2_At1g71990 [cosii_markers]">
      <seq>atctaaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcatttggcaagtgcctgaacaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaacaccaagacagaaagttatgtaacagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84497" stop="89130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84797" g_stop="85525" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87970" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="903" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88096" g_stop="88829" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1637" r_length="734" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1638" polyA_stop="1683"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-M7033" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1637</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84797" e_stop="85525"/>
          <exon e_start="87797" e_stop="87970"/>
          <exon e_start="88096" e_stop="88829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7033-2" ref_strand="+" ref_description="SGN-M7033-2 C2_At1g71990-2 [cosii_markers]">
      <seq>attattttgataacccccttcccctctctctccttgagtgaccaagggagggagagagagagagagaaaaaaagctgatttcttctgtgtgttcttgaagtgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctgttcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccgtttagtaacttgttgggtgcttttaagaaatgggattctcaagtgggttgtgctcagtttagggggaaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgaattgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttagataatttatactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacatctactcctcctgttgagagacgtcaaggtgatccattgcgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattgggtatcatggcaaagatgatgtccagtcaaactatgcgggcgcacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84626" stop="88228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84926" g_stop="85525" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87928" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="736" r_length="132" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-M7033-2" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7033-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84926" e_stop="85525"/>
          <exon e_start="87797" e_stop="87928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTGATAACCCC-TTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGA-A-A-AAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTT</genome_strand>
        <mrna_strand>ATTATTTTGATAACCCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAGAGAGAAAAAAAGCTGATTTCTTCTGTGTGTTCTTGAAGTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTGTTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCGTTTAGTAACTTGTTGGGTGCTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTCAGTTTAGGGGGAAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAATTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTAGATAATTTATACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACATCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCAAGGTGATCCATTGCGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGGTATCATGGCAAAGATGATGTCCAGTCAAACTATGCGGGCGCACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="38935" PGL_stop="39447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38935" e_stop="39447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38935" e_stop="39447" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38935" stop="39447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</gDNA_template>
            <first_frame> N  D  L  A  H  K  S  S  K  S  V  S  N  G  R  A  I  S  N  K  K  D  V  N  D  E  K  G  R  Q  E  R  R  R  K  G  L  T  L  L  K  S  A  W  P  S  E  L  E  Q  P  L  Y  D  V  D  L  V  I  I  L  C  E  M  N  D  F  K  E  G  L  L  F  L  Y  E  K  M  K  L  F  K  E  V  I  A  C  Y  M  Q  V  H  D  H  E  G  L  I  S  C  C  K  R  L  G  D  L  G  K  G  G  D  P  S  L  W  A  D  L  L  K  Y  F  G  E  L  G  E  D  C  S  K  E  V  K  E  I  L  T  Y  I  E  R  G  D  I  L  P  P  I  V  V  L  Q  T  L  A  K  N  P  C  L  S  L  S  V  I  K  D  Y  I </first_frame>
            <second_frame>  M  I  *  H  I  N  L  Q  N  Q  Y  L  M  G  G  L  Y  R  T  R  K  T  *  M  M  R  K  V  V  K  S  D  V  G  R  G  *  P  C  L  R  V  H  G  L  L  N  *  N  N  H  Y  M  T  L  I  L  S  *  F  Y  A  R  *  M  T  L  K  K  D  C  C  F  C  M  R  R  *  N  F  S  K  K  L  L  H  A  T  C  R  Y  M  I  M  K  V  *  F  H  A  A  R  D  W  V  I  W  V  R  G  V  T  L  L  F  G  Q  I  C  *  S  I  L  V  N  L  E  K  T  A  Q  K  K  S  K  K  S  *  H  T  L  R  G  V  I  S  C  L  P  L  W  F  F  R  H  L  L  K  T  R  A  S  L  S  Q  L  S  K  I  T   </second_frame>
            <third_frame>   *  S  S  T  *  I  F  K  I  S  I  *  W  E  G  Y  I  E  Q  E  R  R  K  *  *  E  R  S  S  R  A  T  S  E  G  A  D  L  A  *  E  C  M  A  F  *  T  R  T  T  T  I  *  R  *  S  C  H  N  F  M  R  D  E  *  L  *  R  R  I  V  V  S  V  *  E  D  E  T  F  Q  R  S  Y  C  M  L  H  A  G  T  *  S  *  R  F  D  F  M  L  Q  E  I  G  *  F  G  *  G  G  *  P  F  S  L  G  R  F  V  E  V  F  W  *  T  W  R  R  L  L  K  R  S  Q  R  N  P  D  I  H  *  E  G  *  Y  L  A  S  H  C  G  S  S  D  T  C  *  K  P  V  P  L  S  L  S  Y  Q  R  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38935" stop="39447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDLAHKSSKSVSNGRAISNKKDVNDEKGRQERRRKGLTLLKSAWPSELEQPLYDVDLVIILCEMNDFKEGLLFLYEKMKLFKEVIACYMQVHDHEGLISCCKRLGDLGKGGDPSLWADLLKYFGELGEDCSKEVKEILTYIERGDILPPIVVLQTLAKNPCLSLSVIKDYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="80913" PGL_stop="84252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80913" e_stop="81122"/>
            <exon e_start="81380" e_stop="81470"/>
            <exon e_start="82407" e_stop="82539"/>
            <exon e_start="83608" e_stop="83677"/>
            <exon e_start="83773" e_stop="83833"/>
            <exon e_start="83929" e_stop="84252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.757" e_score="0.990"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="80913" e_stop="81122" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81380" e_stop="81470" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82407" e_stop="82539" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.979">
            <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83608" e_stop="83677" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.947">
            <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83773" e_stop="83833" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83929" e_stop="84252" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80913" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6485-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80990" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81034" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGGGTGTATGCTATTTTGGGCCGTCATGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT : TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA : TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT : CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG : CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</gDNA_template>
            <first_frame> G  R  V  Y  A  I  L  G  R  H  A  H  K  G  A  S  V  V  H  *  L  V  I  A  L  T  D  Y  Q  K  S  S  V  E  R  E  R  D  E  E  E  R  E  S  M  T  T  I  R  R  F  S  C  N  D  L  L  R  F  A  S  V  N  L  D  H  L  T  E  T  :  F  N  M  S  F  Y  M  T  Y  M  A  R  W  P  D  Y  F  H  V  A  K  A  P  G  G  H  I  M  G  Y   : I  M  G  K  V  E  G  Q  G  E  S  W  H  G  H  V  T  A  V  T  V  A  P  E  Y  R  R  Q  Q  L  A  K  K  L  M  Y  L  L  E  E  V  S  D  K  I :   D  K  A  Y  F  V  D  L  F  V  R  A  S  N  T  P  A  I  K  M  Y  E  K  :  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M  F  K  N  Q  V  L  E  F  L  A  L  C  I  C  L  H  A  I  C  S  F  N  I  L  N  C  *  I  F  V  T  Y  *  </first_frame>
            <second_frame>  A  G  C  M  L  F  W  A  V  M  L  T  K  G  H  R  W  S  I  N  W  L  S  P  L  Q  I  T  R  R  V  P  *  R  E  K  E  T  K  K  R  E  K  A  *  R  R  F  V  D  S  A  A  M  T  C  F  A  S  R  Q  *  I  W  I  I  L  L  K  L :   S  T  C  H  F  I  *  L  T  W  Q  D  G  R  I  I  S  M  L  Q  K  L  P  A  A  T  S  W  D  T  :  L  W  E  K  L  K  G  K  V  N  L  G  M  V  T  L  L  Q  *  L  W  L  L  N  I  G  G  S  N  *  P  R  N  *  C  T  C  W  K  K  S  V  I  R   : S  I  R  L  T  L  W  T  C  L  *  E  H  Q  T  H  Q  L  *  R  C  T  R  S :   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L  C  L  R  T  K  C  *  N  F  W  P  C  V  F  A  C  M  P  Y  V  L  L  I  F  *  I  V  K  F  L  *  L  I  E </second_frame>
            <third_frame>   P  G  V  C  Y  F  G  P  S  C  S  Q  R  G  I  G  G  P  L  T  G  Y  R  P  Y  R  L  P  E  E  F  R  R  E  R  K  R  R  R  R  E  R  K  H  D  D  D  S  *  I  Q  L  Q  *  L  A  S  L  R  V  S  E  F  G  S  S  Y  *  N   : F  Q  H  V  I  L  Y  D  L  H  G  K  M  A  G  L  F  P  C  C  K  S  S  R  R  P  H  H  G  I  H :   Y  G  K  S  *  R  A  R  *  I  L  A  W  S  R  Y  C  S  N  C  G  S  *  I  S  E  A  A  I  S  Q  E  I  D  V  P  A  G  R  S  Q  *  *  D  :  R  *  G  L  L  C  G  L  V  C  E  S  I  K  H  T  S  Y  K  D  V  R  E   : A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  V  *  E  P  S  A  R  I  S  G  L  V  Y  L  L  A  C  H  M  F  F  *  Y  F  K  L  L  N  F  C  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80973" stop="81122"/>
                    <exon start="81380" stop="81470"/>
                    <exon start="82407" stop="82539"/>
                    <exon start="83608" stop="83677"/>
                    <exon start="83773" stop="83833"/>
                    <exon start="83929" stop="84020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVIALTDYQKSSVERERDEEERESMTTIRRFSCNDLLRFASVNLDHLTETFNMSFYMTYMARWPDYFHVAKAPGGHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMYLLEEVSDKIDKAYFVDLFVRASNTPAIKMYEKLDYVVYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTPDELEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="84797" PGL_stop="88829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84797" e_stop="85525"/>
            <exon e_start="87797" e_stop="87970"/>
            <exon e_start="88096" e_stop="88829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84797" e_stop="85525" e_length="729"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87797" e_stop="87970" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.946">
            <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="88096" e_stop="88829" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84797" stop="85525"/>
              <exon start="87797" stop="87970"/>
              <exon start="88096" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84926" stop="85525"/>
              <exon start="87797" stop="87928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7033-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG : AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT : GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</gDNA_template>
            <first_frame> I  *  T  V  C  L  Y  *  S  S  M  T  I  L  G  R  T  I  K  Q  F  Y  *  S  N  H  R  *  M  K  T  A  P  S  R  L  P  I  I  N  F  R  S  I  I  L  I  T  P  S  P  L  S  P  *  V  T  K  G  G  R  E  R  K  K  K  G  D  F  F  C  V  F  L  N  *  K  M  Q  L  K  S  V  N  T  F  A  I  T  I  M  L  G  F  T  L  I  I  L  F  F  S  G  F  L  D  F  P  L  H  T  S  S  S  I  P  S  T  K  N  Q  I  L  T  T  I  S  V  S  E  P  D  P  F  S  N  L  L  S  T  F  K  K  W  D  S  Q  V  G  C  A  K  F  R  G  E  H  K  G  L  L  G  N  G  L  L  L  D  S  S  S  G  S  L  Q  N  V  D  D  G  E  L  K  C  N  E  L  K  M  D  H  V  S  V  L  V  K  G  W  T  W  I  P  D  N  L  D  N  L  Y  S  C  R  C  G  L  S  C  L  W  T  K  S  S  V  V  A  D  K  P  D  A  L  L  F  E  T  A  T  P  P  V  E  :  R  R  R  G  D  P  L  R  V  Y  M  D  L  E  A  G  R  K  K  S  G  Y  E  D  I  F  I  G  Y  H  A  E  D  D  V  Q  S  T  Y  A  G  A  L  F  H  N  N  R  N  Y  H  L  S  P  Y  K  N  N  :  D  T  L  V  Y  W  S  S  S  R  C  L  P  Q  R  N  Q  L  A  K  R  L  L  S  L  L  P  S  H  S  F  G  K  C  L  N  N  V  G  G  L  D  K  A  L  S  F  Y  P  E  C  I  K  D  S  N  E  A  P  K  W  W  D  H  L  H  C  A  M  S  H  Y  K  F  V  L  A  I  E  N  T  K  T  E  S  Y  V  T  E  K  L  F  Y  A  L  D  S  G  A  V  P  I  Y  F  G  A  P  N  V  W  D  F  V  P  P  H  S  I  I  D  G  S  K  F  S  S  L  E  E  L  A  S  Y  V  K  A  I  A  N  N  P  V  A  Y  A  E  Y  H  A  W  R  R  C  G  V  L  G  N  Y  R  K  T  R  A  A  S  L  D  T  L  P  C  R  L  C  E  A  I  S  K  R  N  G  R  N  A  K  A  S  *  L  F  N  S  K  A  T  G  Y  *  A  L  N  C  V  L  R  S  T  S  V  V  S  K  Q  C  M  S  C  *  D  L  G  Y  S  G  L  *  R  S  Q  T  L  T  N  *  Y  Y  I  N  F  G  L  T   </first_frame>
            <second_frame>  S  K  Q  Y  A  Y  I  S  L  P  *  Q  Y  *  V  E  Q  S  N  N  F  T  N  L  T  T  G  R  *  K  L  P  L  Q  D  Y  Q  L  S  I  S  D  R  L  F  *  *  P  L  P  L  S  L  L  E  *  P  R  E  G  E  R  E  K  K  K  V  I  F  F  V  Y  S  *  T  E  K  C  N  *  N  L  S  T  H  L  Q  S  Q  S  C  W  V  L  H  L  S  F  Y  S  S  L  D  F  L  I  S  H  F  T  L  L  L  Q  S  H  Q  R  K  I  K  S  *  P  P  S  Q  F  P  S  P  T  L  L  V  T  C  *  A  L  L  R  N  G  I  L  K  W  V  V  L  S  L  G  G  N  I  K  G  Y  *  E  M  G  C  C  W  I  L  L  L  V  L  C  K  M  L  M  M  V  S  *  S  V  M  S  *  R  W  I  M  *  V  Y  *  L  K  G  G  L  G  F  L  I  I  W  I  I  C  T  L  V  G  V  G  L  A  V  C  G  L  N  L  R  L  L  L  I  N  L  M  L  C  C  L  R  Q  L  L  L  L  L  R :   D  V  E  V  I  H  Y  V  Y  T  W  I  L  K  L  V  E  R  N  Q  G  M  R  I  Y  L  L  A  I  M  Q  K  T  M  S  S  Q  P  M  R  A  H  F  F  I  T  I  G  I  I  T  F  L  L  I  R  T  M :   I  L  L  F  T  G  L  H  H  V  V  F  L  K  G  T  S  L  P  N  V  Y  S  A  C  Y  P  P  I  H  L  A  S  A  *  T  M  L  E  V  *  T  R  H  S  H  F  I  L  S  V  S  R  I  L  M  K  H  P  N  G  G  I  I  C  I  A  Q  C  H  I  T  S  L  S  L  R  L  R  T  P  R  Q  K  V  M  *  Q  R  S  Y  F  T  H  W  T  L  V  Q  S  P  F  I  L  V  P  R  M  S  G  T  L  Y  L  H  I  Q  *  L  M  E  A  S  L  A  L  W  R  N  W  P  R  T  L  R  P  L  L  I  I  Q  *  L  M  Q  S  T  M  L  G  E  D  V  A  C  W  V  T  I  E  K  H  G  Q  L  V  W  I  P  C  L  A  G  Y  V  K  P  S  V  K  E  M  E  E  M  Q  K  P  L  D  Y  S  T  A  K  L  Q  G  T  R  L  *  I  V  Y  L  D  Q  L  V  L  F  L  N  S  A  C  L  V  R  T  *  D  I  V  A  C  R  D  L  K  P  L  Q  I  N  T  T  *  I  L  V  *  Q  </second_frame>
            <third_frame>   L  N  S  M  L  I  L  V  F  H  D  N  I  R  S  N  N  Q  T  I  L  L  I  *  P  P  V  D  E  N  C  P  F  K  T  T  N  Y  Q  F  Q  I  D  Y  F  D  N  P  F  P  S  L  S  L  S  D  Q  G  R  E  R  E  K  K  K  R  *  F  F  L  C  I  L  E  L  K  N  A  I  E  I  C  Q  H  I  C  N  H  N  H  V  G  F  Y  T  Y  H  S  I  L  L  W  I  S  *  F  P  T  S  H  F  F  F  N  P  I  N  E  K  S  N  L  D  H  H  L  S  F  R  A  R  P  F  *  *  L  V  E  H  F  *  E  M  G  F  S  S  G  L  C  *  V  *  G  G  T  *  R  V  I  R  K  W  V  V  V  G  F  F  F  W  F  F  A  K  C  *  *  W  *  V  E  V  *  *  A  K  D  G  S  C  E  C  I  S  *  R  V  D  L  D  S  *  *  F  G  *  F  V  L  L  S  V  W  A  *  L  F  V  D  *  I  F  G  C  C  *  *  T  *  C  F  V  V  *  D  S  Y  S  S  C  *   : E  T  S  R  *  S  I  T  C  I  H  G  S  *  S  W  *  K  E  I  R  V  *  G  Y  I  Y  W  L  S  C  R  R  R  C  P  V  N  L  C  G  R  T  F  S  *  Q  S  E  L  S  P  F  S  L  *  E  Q   : *  Y  S  C  L  L  V  F  I  T  L  S  S  S  K  E  P  A  C  Q  T  S  T  Q  L  A  T  L  P  F  I  W  Q  V  P  E  Q  C  W  R  S  R  Q  G  T  L  I  L  S  *  V  Y  Q  G  F  *  *  S  T  Q  M  V  G  S  F  A  L  R  N  V  T  L  Q  V  C  P  C  D  *  E  H  Q  D  R  K  L  C  N  R  E  V  I  L  R  T  G  L  W  C  S  P  H  L  F  W  C  P  E  C  L  G  L  C  T  S  T  F  N  N  *  W  K  Q  V  *  L  F  G  G  I  G  L  V  R  *  G  H  C  *  *  S  S  S  L  C  R  V  P  C  L  E  K  M  W  R  A  G  *  L  *  K  N  T  G  S  *  S  G  Y  L  A  L  Q  V  M  *  S  H  Q  *  K  K  W  K  K  C  K  S  L  L  T  I  Q  Q  Q  S  Y  R  V  L  G  F  K  L  C  T  *  I  N  *  C  C  F  *  T  V  H  V  L  L  G  L  R  I  *  W  L  V  E  I  S  N  P  Y  K  L  I  L  H  K  F  W  S  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85025" stop="85525"/>
                    <exon start="87797" stop="87970"/>
                    <exon start="88096" stop="88665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMQLKSVNTFAITIMLGFTLIILFFSGFLDFPLHTSSSIPSTKNQILTTISVSEPDPFSNLLSTFKKWDSQVGCAKFRGEHKGLLGNGLLLDSSSGSLQNVDDGELKCNELKMDHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSSVVADKPDALLFETATPPVERRRGDPLRVYMDLEAGRKKSGYEDIFIGYHAEDDVQSTYAGALFHNNRNYHLSPYKNNDTLVYWSSSRCLPQRNQLAKRLLSLLPSHSFGKCLNNVGGLDKALSFYPECIKDSNEAPKWWDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALDSGAVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKAIANNPVAYAEYHAWRRCGVLGNYRKTRAASLDTLPCRLCEAISKRNGRNAKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 12416 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2069 bytes was the average size of a spliced alignment
$ 8104 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2701 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:08:31
-->
